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2024-05-08 05:23:33

Gene list

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COG category: Replication, recombination and repair
Organism: Rhodopseudomonas palustris HaA2, HaA2

Number of genes found: 140

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Rhodopseudomonas palustris HaA2, HaA2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPB_2491 conserved hypothetical proteinchromosome CDS2848993 678 + 0.671091
NA RPB_3323 DNA mismatch endonuclease vsrchromosome CDS3802018 423 - 0.567376
NA RPB_2701 UvrD/REP helicasechromosome CDS3086282 2061 + 0.678797
NA RPB_2008 DNA ligase, NAD-dependentchromosome CDS2283424 2145 + 0.671329
NA RPB_1172 conserved hypothetical proteinchromosome CDS1346293 564 + 0.684397
NA RPB_1859 exodeoxyribonuclease VII, large subunitchromosome CDS2123791 1617 - 0.703772
NA RPB_1281 deoxyribonucleasechromosome CDS1465530 1110 + 0.665766
NA RPB_0668 DNA polymerase III, subunits gamma and tauchromosome CDS751755 1884 - 0.68949
NA RPB_0364 conserved hypothetical proteinchromosome CDS406149 366 - 0.666667
NA RPB_4107 hypothetical proteinchromosome CDS4677176 804 - 0.640547
NA RPB_2007 DNA repair protein RecNchromosome CDS2281414 1686 + 0.710558
NA RPB_2193 DNA-cytosine methyltransferasechromosome CDS2486279 1077 + 0.539461
NA RPB_0505 ATP-dependent helicase HrpBchromosome CDS565325 2613 + 0.718714
NA RPB_0439 endonuclease IIIchromosome CDS482003 765 + 0.658824
NA RPB_4236 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS4811952 543 - 0.697974
NA RPB_3717 conserved hypothetical proteinchromosome CDS4255713 258 - 0.51938
NA RPB_1901 Excinuclease ABC, C subunit-likechromosome CDS2175881 282 - 0.677305
NA RPB_2421 DNA processing protein DprA, putativechromosome CDS2775650 1137 - 0.720317
NA RPB_2410 DNA-directed DNA polymerasechromosome CDS2763188 1290 - 0.692248
NA RPB_2978 DNA topoisomerase IV, B subunitchromosome CDS3389820 2055 + 0.663747
NA RPB_4132 DNA primasechromosome CDS4705991 2052 - 0.68616
NA RPB_2605 Uracil-DNA glycosylase superfamilychromosome CDS2989033 603 - 0.674959
NA RPB_0387 DNA polymerase III, delta subunitchromosome CDS429782 1029 + 0.701652
NA RPB_4176 DNA mismatch repair protein MutLchromosome CDS4747341 1794 - 0.698439
NA RPB_0379 exodeoxyribonuclease IIIchromosome CDS420707 813 + 0.649446
NA RPB_1116 DNA-3-methyladenine glycosylase Ichromosome CDS1285342 654 - 0.663609
NA RPB_2713 single-strand binding proteinchromosome CDS3097524 504 - 0.652778
NA RPB_1917 ErfK/YbiS/YcfS/YnhGchromosome CDS2190834 1221 + 0.68878
NA RPB_2429 Holliday junction resolvase YqgFchromosome CDS2786266 483 - 0.6853
NA RPB_2889 DNA-3-methyladenine glycosylasechromosome CDS3289286 606 + 0.706271
NA RPB_1059 NUDIX hydrolasechromosome CDS1214362 588 + 0.712585
NA RPB_4271 Holliday junction DNA helicase RuvAchromosome CDS4855064 669 - 0.686099
NA RPB_1342 Ribonuclease Hchromosome CDS1528662 486 + 0.648148
NA RPB_2985 DEAD/DEAH box helicasechromosome CDS3399339 1551 + 0.703417
NA RPB_2534 hypothetical proteinchromosome CDS2899276 1692 - 0.59279
NA RPB_1876 ATP dependent DNA ligase, centralchromosome CDS2138794 2745 + 0.666302
NA RPB_0638 integration host factor, beta subunitchromosome CDS722757 306 - 0.640523
NA RPB_0921 hypothetical proteinchromosome CDS1064859 615 + 0.57561
NA RPB_0666 recombination protein RecRchromosome CDS750696 606 - 0.686469
NA RPB_1471 Phasin 2 proteinchromosome CDS1660620 432 + 0.627315
NA RPB_2716 conserved hypothetical proteinchromosome CDS3102645 1248 - 0.525641
NA RPB_1438 Endonuclease/exonuclease/phosphatasechromosome CDS1626988 1125 - 0.615111
NA RPB_0437 transcriptional regulator, AraC familychromosome CDS480510 897 - 0.701226
NA RPB_0472 DNA-cytosine methyltransferasechromosome CDS519700 1173 - 0.657289
NA RPB_0004 DNA replication and repair protein RecFchromosome CDS4098 1137 + 0.71504
NA RPB_1080 Radical SAMchromosome CDS1239310 1161 + 0.657192
NA RPB_3478 ISSpo8, transposasechromosome CDS3983587 945 - 0.578836
NA RPB_1081 Ribonuclease Hchromosome CDS1240599 855 + 0.707602
NA RPB_2852 DEAD/DEAH box helicasechromosome CDS3249096 2187 + 0.6877
NA RPB_2898 exodeoxyribonuclease IIIchromosome CDS3299593 855 - 0.677193
NA RPB_2876 DNA gyrase, A subunitchromosome CDS3272113 2778 - 0.646508
NA RPB_2482 DNA polymerase III chi subunit, HolCchromosome CDS2841053 453 + 0.646799
NA RPB_0005 DNA gyrase, B subunitchromosome CDS5462 2442 + 0.660115
NA RPB_0398 DNA polymerase III, epsilon subunitchromosome CDS442905 696 + 0.662356
NA RPB_0628 conserved hypothetical proteinchromosome CDS709131 3147 + 0.703845
NA RPB_3046 Phage integrasechromosome CDS3470661 1647 + 0.563449
NA RPB_0800 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS897297 579 - 0.708117
NA RPB_0420 Protein of unknown function UPF0102chromosome CDS463349 387 - 0.687339
NA RPB_4201 RelB antitoxinchromosome CDS4773965 366 + 0.614754
NA RPB_4628 SNase-like nucleasechromosome CDS5229937 729 + 0.672154
NA RPB_3319 SNase-like nucleasechromosome CDS3797782 477 + 0.649895
NA RPB_4146 excinuclease ABC, B subunitchromosome CDS4721591 3054 + 0.672888
NA RPB_4269 Holliday junction DNA helicase RuvBchromosome CDS4853385 1047 - 0.69341
NA RPB_2154 Transposase IS116/IS110/IS902chromosome CDS2443985 981 - 0.658512
NA RPB_0533 Tyrosine recombinase XerDchromosome CDS599413 1044 - 0.706897
NA RPB_0923 Resolvase-likechromosome CDS1066658 705 - 0.64539
NA RPB_0619 formamidopyrimidine-DNA glycosylasechromosome CDS698153 882 - 0.683673
NA RPB_0001 chromosomal replication initiator protein DnaAchromosome CDS676 1419 + 0.668076
NA RPB_4459 exodeoxyribonuclease VII, small subunitchromosome CDS5048004 252 + 0.678571
NA RPB_3332 NUDIX hydrolasechromosome CDS3812813 717 - 0.670851
NA RPB_0841 Transposase IS116/IS110/IS902chromosome CDS956435 981 - 0.658512
NA RPB_0263 NUDIX hydrolasechromosome CDS296719 495 + 0.660606
NA RPB_0813 HhH-GPDchromosome CDS930040 723 - 0.701245
NA RPB_0848 DNA polymerase Ichromosome CDS965253 3099 - 0.665053
NA RPB_0179 DEAD/DEAH box helicasechromosome CDS193912 2040 - 0.693627
NA RPB_0029 NUDIX hydrolasechromosome CDS27426 414 - 0.661836
NA RPB_0190 hypothetical proteinchromosome CDS210211 1677 + 0.626118
NA RPB_2364 Deoxyribodipyrimidine photolyasechromosome CDS2718807 1464 - 0.697404
NA RPB_0700 DNA repair protein RadCchromosome CDS786248 753 + 0.669323
NA RPB_1636 conserved hypothetical proteinchromosome CDS1844892 339 + 0.59292
NA RPB_0002 DNA polymerase III, beta subunitchromosome CDS2356 1119 + 0.661305
NA RPB_0271 Phage integrasechromosome CDS306126 1056 + 0.695076
NA RPB_3563 DNA polymerase III, alpha subunitchromosome CDS4080171 3498 - 0.668954
NA RPB_0049 conserved hypothetical proteinchromosome CDS50507 924 + 0.658009
NA RPB_1775 Nucleoside diphosphate pyrophosphatasechromosome CDS2036487 639 + 0.719875
NA RPB_1177 excinuclease ABC, C subunitchromosome CDS1349728 2088 - 0.679119
NA RPB_2962 single-stranded-DNA-specific exonuclease RecJchromosome CDS3372757 1842 - 0.698154
NA RPB_2758 exodeoxyribonuclease IIIchromosome CDS3145271 831 + 0.624549
NA RPB_3860 serine/threonine protein kinasechromosome CDS4414760 1461 - 0.678987
NA RPB_4639 conserved hypothetical proteinchromosome CDS5244587 438 + 0.655251
NA RPB_2715 excinuclease ABC, A subunitchromosome CDS3099548 3036 + 0.656126
NA RPB_3125 Phage integrasechromosome CDS3558855 1095 - 0.586301
NA RPB_2023 UvrD/REP helicasechromosome CDS2299877 2538 - 0.663121
NA RPB_0088 SNase-like nucleasechromosome CDS94073 579 + 0.70639
NA RPB_0926 Phage integrasechromosome CDS1068814 1353 - 0.584627
NA RPB_0548 helicasechromosome CDS615831 3438 + 0.698662
NA RPB_1630 conserved hypothetical proteinchromosome CDS1836666 207 - 0.647343
NA RPB_1793 DEAD/DEAH box helicasechromosome CDS2052451 1476 - 0.689024
NA RPB_4617 ATP dependent DNA ligasechromosome CDS5217870 1869 + 0.682183
NA RPB_0528 DNA mismatch repair protein MutSchromosome CDS589261 2736 + 0.696637
NA RPB_4195 NUDIX hydrolasechromosome CDS4767943 489 - 0.668712
NA RPB_1073 DNA methylase N-4/N-6chromosome CDS1232526 1134 - 0.650794
NA RPB_3325 DNA-cytosine methyltransferasechromosome CDS3803548 1317 - 0.564161
NA RPB_0471 putative patch repair proteinchromosome CDS519284 420 - 0.647619
NA RPB_3741 recA proteinchromosome CDS4281654 1095 - 0.644749
NA RPB_0670 NUDIX hydrolasechromosome CDS754531 933 + 0.663451
NA RPB_2354 NUDIX hydrolasechromosome CDS2704536 795 + 0.659119
NA RPB_1032 SNase-like nucleasechromosome CDS1184980 741 + 0.677463
NA RPB_2416 NUDIX hydrolasechromosome CDS2768633 759 - 0.689065
NA RPB_0260 NUDIX hydrolasechromosome CDS293834 504 + 0.642857
NA RPB_2682 TatD-related deoxyribonucleasechromosome CDS3064497 798 + 0.669173
NA RPB_0629 UvrD/REP helicasechromosome CDS712274 3486 + 0.689902
NA RPB_2419 DNA topoisomerasechromosome CDS2772217 2736 - 0.661184
NA RPB_2850 transcription-repair coupling factorchromosome CDS3245221 3516 - 0.665813
NA RPB_2615 DNA repair protein RecOchromosome CDS2998028 750 + 0.681333
NA RPB_1701 2OG-Fe(II) oxygenasechromosome CDS1935485 672 + 0.677083
NA RPB_1083 phage SPO1 DNA polymerase-related proteinchromosome CDS1243046 834 - 0.701439
NA RPB_2651 integration host factor, alpha subunitchromosome CDS3030365 372 + 0.607527
NA RPB_1194 NUDIX hydrolasechromosome CDS1370308 666 + 0.63964
NA RPB_4651 hypothetical proteinchromosome CDS5260921 513 - 0.631579
NA RPB_3306 Phage integrasechromosome CDS3780879 1353 + 0.5898
NA RPB_4339 NUDIX hydrolasechromosome CDS4924655 627 - 0.701754
NA RPB_2324 AAA_5 ATPasechromosome CDS2673054 1335 + 0.689139
NA RPB_4701 ATP-dependent DNA helicase, RecQchromosome CDS5321057 1857 + 0.680129
NA RPB_2601 DNA polymerase III, alpha subunitchromosome CDS2983527 3456 + 0.671875
NA RPB_2458 replicative DNA helicasechromosome CDS2814512 1497 - 0.641283
NA RPB_1070 A/G-specific adenine glycosylasechromosome CDS1229206 1074 + 0.716946
NA RPB_2620 DNA topoisomerase IV, A subunitchromosome CDS3001661 2262 + 0.64412
NA RPB_4524 Phage integrasechromosome CDS5112589 933 + 0.66881
NA RPB_2570 Histone-like DNA-binding proteinchromosome CDS2953002 312 - 0.653846
NA RPB_0270 primosomal protein N'chromosome CDS303801 2208 - 0.689312
NA RPB_3246 conserved hypothetical proteinchromosome CDS3708940 279 + 0.562724
NA RPB_3564 conserved hypothetical proteinchromosome CDS4083820 1467 - 0.73756
NA RPB_4272 crossover junction endodeoxyribonuclease RuvCchromosome CDS4855962 597 - 0.681742
NA RPB_1952 Protein of unknown function DUF1568chromosome CDS2217955 537 + 0.631285
NA RPB_1323 conserved hypothetical proteinchromosome CDS1510030 846 - 0.680851
NA RPB_3531 conserved hypothetical proteinchromosome CDS4041591 408 + 0.639706
NA RPB_2680 DNA polymerase III, delta prime subunitchromosome CDS3061833 1041 + 0.706052
NA RPB_2538 hypothetical proteinchromosome CDS2904510 2289 - 0.671472
NA RPB_4258 Excinuclease ABC, C subunit-likechromosome CDS4844127 303 + 0.656766