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2024-05-07 13:40:13

Gene list

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COG category: Replication, recombination and repair
Organism: Novosphingobium aromaticivorans DSM 12444, DSM 12444

Number of genes found: 154

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Novosphingobium aromaticivorans DSM 12444, DSM 12444
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Saro_1755 NUDIX hydrolasechromosome CDS1849895 486 - 0.639918
NA Saro_2064 phage integrasechromosome CDS2204037 894 + 0.725951
NA Saro_0068 DNA ligase (ATP)chromosome CDS69911 1596 + 0.671679
NA Saro_0641 DNA primasechromosome CDS679419 1719 + 0.657359
NA Saro_2912 NUDIX hydrolasechromosome CDS3130142 450 + 0.655556
NA Saro_2661 Recombinational DNA repair protein (RecF pathway)-likechromosome CDS2899056 609 + 0.701149
NA Saro_1982 transcription-repair coupling factorchromosome CDS2099682 3495 + 0.655222
NA Saro_2039 Uracil-DNA glycosylase superfamilychromosome CDS2175675 1431 - 0.646401
NA Saro_2201 SMF proteinchromosome CDS2341420 1038 + 0.657033
NA Saro_2274 single-stranded-DNA-specific exonuclease RecJchromosome CDS2413476 1722 + 0.709059
NA Saro_1460 transposasechromosome CDS1502832 501 + 0.606786
NA Saro_0906 Holliday junction resolvase YqgFchromosome CDS960808 468 - 0.681624
NA Saro_2516 hypothetical proteinchromosome CDS2720987 468 - 0.67094
NA Saro_1997 UvrD/REP helicasechromosome CDS2126345 3486 - 0.674699
NA Saro_0255 phage integrasechromosome CDS268306 1293 + 0.577726
NA Saro_1458 IstB-like ATP-binding proteinchromosome CDS1501401 858 + 0.645688
NA Saro_2807 Excinuclease ABC, C subunit-likechromosome CDS3031475 357 - 0.593838
NA Saro_1355 ATP-dependent helicase HrpBchromosome CDS1400714 2454 + 0.707416
NA Saro_1311 DNA repair protein RadCchromosome CDS1356054 738 - 0.659892
NA Saro_1116 HhH-GPDchromosome CDS1162772 618 + 0.66343
NA Saro_1060 excinuclease ABC, C subunitchromosome CDS1102691 1977 + 0.661609
NA Saro_0423 Holliday junction DNA helicase RuvBchromosome CDS459887 1029 + 0.669582
NA Saro_0901 ATPasechromosome CDS958095 615 + 0.666667
NA Saro_1296 conserved hypothetical protein 95chromosome CDS1341179 543 - 0.718232
NA Saro_2209 conserved hypothetical genomic island proteinchromosome CDS2352836 939 - 0.620873
NA Saro_2759 transposase orfA IS5 family elementchromosome CDS2979874 348 - 0.62931
NA Saro_1153 DNA replication and repair protein RecFchromosome CDS1201482 1074 - 0.703911
NA Saro_2700 Phage-related protein predicted endonuclease-likechromosome CDS2937379 912 - 0.618421
NA Saro_0957 Excinuclease ABC, C subunit-likechromosome CDS1004992 357 + 0.591036
NA Saro_1773 Radical SAMchromosome CDS1870043 1137 - 0.630607
NA Saro_2172 helicase-likechromosome CDS2310734 2769 - 0.603467
NA Saro_0156 exodeoxyribonuclease IIIchromosome CDS154525 780 + 0.626923
NA Saro_1509 hypothetical proteinchromosome CDS1553048 390 - 0.579487
NA Saro_1840 DNA methylase N-4/N-6chromosome CDS1939534 1143 + 0.630796
NA Saro_1429 DNA polymerase III, beta subunitchromosome CDS1470682 1128 + 0.62766
NA Saro_3023 hypothetical proteinchromosome CDS3234452 381 + 0.543307
NA Saro_1452 DNA methylase N-4/N-6chromosome CDS1497036 1308 + 0.668196
NA Saro_1780 hypothetical proteinchromosome CDS1877572 777 - 0.67825
NA Saro_2584 DEAD/DEAH box helicase-likechromosome CDS2789231 1773 + 0.717992
NA Saro_2793 DNA topoisomerase IV, A subunitchromosome CDS3015091 2286 - 0.653543
NA Saro_1801 DNA processing protein DprA, putativechromosome CDS1898325 1128 + 0.684397
NA Saro_0237 DEAD/DEAH box helicase-likechromosome CDS244870 1497 - 0.698731
NA Saro_0660 hypothetical proteinchromosome CDS694266 2973 + 0.622267
NA Saro_2780 excinuclease ABC, B subunitchromosome CDS2999521 2244 + 0.652406
NA Saro_2362 Helicase c2chromosome CDS2509800 2724 + 0.681351
NA Saro_0506 transposase, IS4chromosome CDS548866 390 - 0.623077
NA Saro_2692 phage integrasechromosome CDS2932972 1215 - 0.62963
NA Saro_2699 rect proteinchromosome CDS2936495 885 - 0.646328
NA Saro_0353 helicase-likechromosome CDS385089 2802 + 0.643469
NA Saro_2199 SMF proteinchromosome CDS2339884 888 + 0.647523
NA Saro_2182 hypothetical proteinchromosome CDS2323464 786 - 0.627226
NA Saro_1935 phage integrasechromosome CDS2049480 2133 + 0.628692
NA Saro_2758 transposase, IS4chromosome CDS2979464 390 - 0.623077
NA Saro_0596 formamidopyrimidine-DNA glycosylasechromosome CDS641330 813 + 0.675277
NA Saro_0006 endonuclease IIIchromosome CDS5121 696 + 0.632184
NA Saro_2971 protein serine/threonine phosphataseschromosome CDS3191032 1692 + 0.687352
NA Saro_2715 Terminase small subunitchromosome CDS2947428 549 + 0.612022
NA Saro_2708 hypothetical proteinchromosome CDS2942874 234 + 0.598291
NA Saro_1293 UvrD/REP helicasechromosome CDS1336587 2298 - 0.658834
NA Saro_1528 transposase, IS4chromosome CDS1571775 390 - 0.623077
NA Saro_1529 transposase orfA IS5 family elementchromosome CDS1572185 348 - 0.62931
NA Saro_0893 Excinuclease ABC, C subunit-likechromosome CDS949958 300 - 0.633333
NA Saro_2190 single-strand binding proteinchromosome CDS2330329 390 - 0.610256
NA Saro_1292 DEAD/DEAH box helicase-likechromosome CDS1335055 1395 + 0.660932
NA Saro_1918 DNA gyrase, A subunitchromosome CDS2029039 2727 - 0.651999
NA Saro_1803 DNA topoisomerasechromosome CDS1899884 2580 + 0.65
NA Saro_1759 Deoxyribodipyrimidine photolyasechromosome CDS1854600 1365 + 0.654945
NA Saro_2895 recombination protein RecRchromosome CDS3114802 597 + 0.681742
NA Saro_2358 hypothetical proteinchromosome CDS2505304 396 + 0.669192
NA Saro_0892 DNA polymerase III chi subunit, HolCchromosome CDS949333 432 + 0.710648
NA Saro_1934 phage integrasechromosome CDS2048323 1167 + 0.617823
NA Saro_0121 helicase-likechromosome CDS123162 2568 + 0.65771
NA Saro_1192 excinuclease ABC, A subunitchromosome CDS1235856 2913 + 0.66392
NA Saro_0421 crossover junction endodeoxyribonuclease RuvCchromosome CDS458696 477 + 0.656184
NA Saro_0171 exodeoxyribonuclease VII, large subunitchromosome CDS171381 1362 - 0.701909
NA Saro_0165 histone-like DNA-binding proteinchromosome CDS163591 282 + 0.634752
NA Saro_0264 conserved hypothetical proteinchromosome CDS281100 2070 + 0.601932
NA Saro_0960 HhH-GPDchromosome CDS1006872 1080 + 0.694444
NA Saro_0381 putative ArdC antirestriction proteinchromosome CDS418306 939 - 0.682641
NA Saro_2656 DNA-directed DNA polymerasechromosome CDS2893230 1137 - 0.666667
NA Saro_2038 hypothetical proteinchromosome CDS2173084 2595 + 0.663198
NA Saro_0306 phage integrasechromosome CDS331516 1254 + 0.616427
NA Saro_0001 chromosomal replication initiator protein DnaAchromosome CDS24 1497 + 0.659319
NA Saro_2396 transcriptional regulator, AraC familychromosome CDS2563138 1032 - 0.698643
NA Saro_1506 transposasechromosome CDS1551018 717 + 0.606695
NA Saro_0876 NUDIX hydrolasechromosome CDS931664 543 - 0.651934
NA Saro_2365 integration host factor, alpha subunitchromosome CDS2513528 297 - 0.606061
NA Saro_3010 hypothetical proteinchromosome CDS3226660 687 - 0.614265
NA Saro_3256 uracil-DNA glycosylasechromosome CDS3476471 681 + 0.722467
NA Saro_2234 DNA primasechromosome CDS2375707 1866 + 0.668274
NA Saro_2706 hypothetical proteinchromosome CDS2941904 678 + 0.651917
NA Saro_2848 single-strand binding proteinchromosome CDS3074150 552 - 0.675725
NA Saro_0639 DNA polymerase III, beta subunitchromosome CDS677953 1248 + 0.651442
NA Saro_2655 NUDIX hydrolasechromosome CDS2892766 486 + 0.654321
NA Saro_2083 protein of unknown function UPF0102chromosome CDS2220539 315 - 0.72381
NA Saro_3217 DNA polymerase III, delta subunitchromosome CDS3434161 1023 + 0.657869
NA Saro_1275 recA proteinchromosome CDS1314279 1071 + 0.636788
NA Saro_1123 hypothetical proteinchromosome CDS1167283 738 + 0.688347
NA Saro_3310 DNA gyrase, B subunitchromosome CDS3529785 2508 + 0.651914
NA Saro_1695 ATP dependent DNA ligasechromosome CDS1779469 2532 + 0.663507
NA Saro_1362 histone-like DNA-binding proteinchromosome CDS1410990 273 + 0.637363
NA Saro_1940 DNA-directed DNA polymerasechromosome CDS2055596 957 - 0.664577
NA Saro_2196 RNA-directed DNA polymerasechromosome CDS2334380 1902 - 0.58938
NA Saro_2254 exodeoxyribonuclease VII, small subunitchromosome CDS2393557 252 - 0.642857
NA Saro_1902 phage integrasechromosome CDS2015288 882 + 0.664399
NA Saro_0557 nuclease (SNase-like)chromosome CDS606585 432 + 0.680556
NA Saro_2712 conserved hypothetical proteinchromosome CDS2945335 1260 + 0.643651
NA Saro_0422 Holliday junction DNA helicase RuvAchromosome CDS459269 615 + 0.678049
NA Saro_1538 DNA polymerase III, alpha subunitchromosome CDS1584662 3237 + 0.634538
NA Saro_1979 DEAD/DEAH box helicase-likechromosome CDS2096600 2058 - 0.651604
NA Saro_3190 exodeoxyribonuclease IIIchromosome CDS3409927 792 + 0.645202
NA Saro_2393 primosomal protein N'chromosome CDS2558451 2202 + 0.699364
NA Saro_1162 hypothetical proteinchromosome CDS1206395 255 + 0.658824
NA Saro_3200 ATP-dependent DNA helicase RecQchromosome CDS3416729 1803 - 0.690516
NA Saro_1485 transposasechromosome CDS1526794 717 + 0.592748
NA Saro_1998 helicasechromosome CDS2129827 2982 - 0.702213
NA Saro_2518 NUDIX hydrolasechromosome CDS2721893 786 - 0.657761
NA Saro_1736 DNA repair protein RecNchromosome CDS1830078 1665 + 0.708108
NA Saro_0364 putative replication protein Achromosome CDS399438 879 - 0.658703
NA Saro_2547 AAA ATPase, central regionchromosome CDS2750630 1359 + 0.67844
NA Saro_1172 Uracil-DNA glycosylase superfamilychromosome CDS1212585 507 + 0.672584
NA Saro_0526 Recombinasechromosome CDS568674 1575 + 0.580317
NA Saro_1495 transposasechromosome CDS1538674 717 + 0.592748
NA Saro_1938 TatD-related deoxyribonucleasechromosome CDS2053220 780 - 0.610256
NA Saro_1907 NUDIX hydrolasechromosome CDS2019395 450 + 0.597778
NA Saro_2173 putative predicted DNA methylase containing a Zn-ribbonchromosome CDS2313519 2940 - 0.593878
NA Saro_1770 DNA polymerase III, alpha subunitchromosome CDS1864289 3648 + 0.652686
NA Saro_0278 DNA polymerase Ichromosome CDS296295 2838 - 0.674066
NA Saro_1022 NUDIX hydrolasechromosome CDS1061135 615 - 0.666667
NA Saro_1738 DNA ligase, NAD-dependentchromosome CDS1832438 2166 + 0.659741
NA Saro_1481 transposasechromosome CDS1523603 717 + 0.594142
NA Saro_2594 conserved hypothetical proteinchromosome CDS2802353 1053 - 0.681861
NA Saro_0617 phage integrasechromosome CDS665462 1152 - 0.640625
NA Saro_2183 TrwC proteinchromosome CDS2324303 1629 - 0.654389
NA Saro_1537 conserved hypothetical proteinchromosome CDS1583247 1419 + 0.647639
NA Saro_1839 Ribonuclease Hchromosome CDS1938693 591 + 0.683587
NA Saro_1459 putative IS6 family transposasechromosome CDS1502365 489 + 0.603272
NA Saro_0113 DNA polymerase III, epsilon subunitchromosome CDS115877 693 - 0.640693
NA Saro_3293 DNA mismatch repair protein MutSchromosome CDS3512607 2577 + 0.69383
NA Saro_0962 NUDIX hydrolasechromosome CDS1009251 882 + 0.688209
NA Saro_2127 DNA mismatch repair protein MutLchromosome CDS2264590 1812 - 0.684327
NA Saro_1449 Resolvase-likechromosome CDS1494442 1569 - 0.674952
NA Saro_1085 ribonuclease Hchromosome CDS1128544 432 - 0.662037
NA Saro_1357 DNA polymerase III, subunits gamma and tauchromosome CDS1403928 1722 + 0.656794
NA Saro_2086 DNA topoisomerase IV, B subunitchromosome CDS2223045 2001 + 0.66017
NA Saro_1217 histone-like DNA-binding proteinchromosome CDS1266836 276 - 0.648551
NA Saro_2211 phage integrasechromosome CDS2354601 1272 - 0.575472
NA Saro_3008 endodeoxyribonuclease RusAchromosome CDS3225798 408 - 0.615196
NA Saro_1456 hypothetical proteinchromosome CDS1499809 246 + 0.565041
NA Saro_0507 transposase orfA IS5 family elementchromosome CDS549276 348 - 0.62931
NA Saro_0814 Excinuclease ABC, C subunit-likechromosome CDS866733 336 - 0.633929
NA Saro_0142 replicative DNA helicasechromosome CDS143844 1515 - 0.652145
NA Saro_1457 Integrasechromosome CDS1500172 1233 + 0.647202
NA Saro_2736 hypothetical proteinchromosome CDS2960755 2271 + 0.652576