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2024-04-27 14:54:47

Gene list

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COG category: Replication, recombination and repair
Organism: Synechococcus sp. JA-2-3Ba(2-13), JA-2-3Ba(2-13)

Number of genes found: 219

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Synechococcus sp. JA-2-3Ba(2-13), JA-2-3Ba(2-13)
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CYB_0087 ISSoc1, transposasechromosome CDS102812 1218 + 0.541051
NA CYB_0466 protein kinasechromosome CDS471169 2241 + 0.59884
NA CYB_1663 single-strand binding family proteinchromosome CDS1743355 399 - 0.58396
NA CYB_0598 ISSoc1, transposasechromosome CDS605551 1194 + 0.569514
NA CYB_0247 ISSoc9, transposasechromosome CDS260889 1362 - 0.62188
NA CYB_2085 ISSoc13, transposase orfAchromosome CDS2181775 378 + 0.44709
NA CYB_2735 ISSoc1, transposasechromosome CDS2830276 1290 - 0.548837
NA CYB_0529 ISSoc10, orfA transposasechromosome CDS544295 441 - 0.480726
NA CYB_1759 ISSoc1, transposasechromosome CDS1842323 1227 - 0.545232
NA CYB_0644 conserved hypothetical proteinchromosome CDS654687 366 + 0.554645
NA CYB_2701 ISSoc8, transposasechromosome CDS2789872 1155 - 0.559307
NA CYB_0052 ISSoc13, transposase orfBchromosome CDS65862 408 - 0.433824
NA CYB_0197 ISSoc13, transposase orfAchromosome CDS210425 378 + 0.449735
NA CYB_2250 ISSoc13, transposase orfAchromosome CDS2354073 378 - 0.44709
NA CYB_2521 ISSoc1, transposasechromosome CDS2619922 1194 + 0.579565
NA CYB_2515 serine/threonine protein kinasechromosome CDS2609449 1644 - 0.611922
NA CYB_1392 site-specific recombinase, phage integrase familychromosome CDS1464369 993 + 0.620342
NA CYB_2086 ISSoc13, transposase orfBchromosome CDS2182110 408 + 0.428922
NA CYB_1105 putative transposase, truncationchromosome CDS1139571 240 - 0.475
NA CYB_2646 conserved hypothetical proteinchromosome CDS2733293 1536 - 0.610677
NA CYB_2416 putative helicasechromosome CDS2511618 2409 - 0.589871
NA CYB_0594 CRISPR-associated RAMP protein, SSO1426 familychromosome CDS599722 723 - 0.658368
NA CYB_2925 ISSoc9, transposasechromosome CDS3023197 1338 - 0.617339
NA CYB_2790 conserved hypothetical proteinchromosome CDS2888078 492 - 0.583333
NA CYB_2313 ISSoc11, transposase orfAchromosome CDS2424098 774 - 0.537468
NA CYB_0273 putative methylated-DNA-[protein]-cysteine S-methyltransferasechromosome CDS287862 354 + 0.607345
NA CYB_1284 nuclease, putativechromosome CDS1338555 978 - 0.587935
NA CYB_0837 CRISPR-associated RAMP proteinchromosome CDS869033 1824 - 0.529605
NA CYB_1515 tetratricopeptide repeat/protein kinase domain proteinchromosome CDS1588914 3813 - 0.623918
NA CYB_1750 conserved hypothetical protein TIGR00250chromosome CDS1833258 513 - 0.62768
NA CYB_1530 exonuclease family proteinchromosome CDS1606419 2352 + 0.549745
NA CYB_1755 ISSoc13, transposase orfBchromosome CDS1839105 408 - 0.436274
NA CYB_0590 CRISPR-associated RAMP protein, SSO1426 familychromosome CDS596531 852 - 0.60446
NA CYB_1297 ISSoc1, transposasechromosome CDS1358130 1218 - 0.549261
NA CYB_2475 ISSoc13, transposase orfBchromosome CDS2571341 408 + 0.433824
NA CYB_1970 RecF/RecN/SMC N terminal domain proteinchromosome CDS2066705 3618 - 0.52764
NA CYB_0472 ISSoc1, transposasechromosome CDS481589 1212 + 0.568482
NA CYB_1151 ISSoc1, transposasechromosome CDS1190676 1194 + 0.548576
NA CYB_2484 ISSoc11, transposase orfAchromosome CDS2581306 774 + 0.527132
NA CYB_2276 putative DNA mismatch repair protein MutLchromosome CDS2381533 1749 + 0.630074
NA CYB_0530 ISSoc10, orfB transposasechromosome CDS544793 1245 + 0.534137
NA CYB_1450 ISSoc1, transposasechromosome CDS1521393 1218 - 0.54844
NA CYB_0026 ISSoc2, transposasechromosome CDS32083 1233 + 0.548256
NA CYB_2592 ISSoc13, transposase orfAchromosome CDS2692553 378 - 0.44709
NA CYB_0053 ISSoc13, transposase orfAchromosome CDS66227 378 - 0.44709
NA CYB_2223 ISSoc11, transposase orfA, truncationchromosome CDS2327106 390 + 0.551282
NA CYB_2464 hydrolase, TatD familychromosome CDS2561278 780 + 0.615385
NA CYB_1872 ISSoc1, transposasechromosome CDS1954839 1218 - 0.559113
NA CYB_0019 ISSoc2, resolvasechromosome CDS22429 594 - 0.525253
NA CYB_1701 putative helicasechromosome CDS1784956 2895 - 0.626252
NA CYB_1302 leucine rich repeat proteinchromosome CDS1364733 855 - 0.610526
NA CYB_0203 ISSoc13, transposase orfBchromosome CDS214454 408 - 0.428922
NA CYB_0949 serine/threonine protein kinasechromosome CDS984929 1890 + 0.622751
NA CYB_0522 serine/threonine protein kinasechromosome CDS536868 1899 - 0.622433
NA CYB_2575 serine/threonine protein kinasechromosome CDS2678480 1353 + 0.597931
NA CYB_1195 ISSoc8, transposasechromosome CDS1235563 1155 + 0.561039
NA CYB_2373 MutS2 family proteinchromosome CDS2478040 2418 - 0.634409
NA CYB_0641 ISSoc13, transposase orfBchromosome CDS651867 408 + 0.433824
NA CYB_2474 ISSoc13, transposase orfAchromosome CDS2571006 378 + 0.44709
NA CYB_0198 ISSoc13, transposase orfBchromosome CDS210760 408 + 0.428922
NA CYB_0563 hypothetical proteinchromosome CDS572901 318 + 0.512579
NA CYB_1591 ISSoc14, transposasechromosome CDS1662796 1107 + 0.553749
NA CYB_0075 ISSoc11, transposase orfBchromosome CDS87267 264 + 0.568182
NA CYB_0548 ISSoc8, transposasechromosome CDS559713 1155 + 0.560173
NA CYB_0979 ISSoc1, transposasechromosome CDS1015075 1194 + 0.546901
NA CYB_1201 ISSoc1, transposasechromosome CDS1244786 1236 + 0.564725
NA CYB_2224 ISSoc11, transposase orfBchromosome CDS2327701 264 + 0.556818
NA CYB_1826 ISSoc1, transposasechromosome CDS1917271 1194 + 0.552764
NA CYB_0536 hydrolase, NUDIX familychromosome CDS551297 549 + 0.535519
NA CYB_1756 ISSoc13, transposase orfAchromosome CDS1839470 378 - 0.44709
NA CYB_1688 ISSoc1, transposasechromosome CDS1763451 1173 + 0.554135
NA CYB_2835 ISSoc1, transposasechromosome CDS2933474 1236 + 0.575243
NA CYB_2067 ISSoc13, transposase orfAchromosome CDS2165301 378 + 0.44709
NA CYB_2407 ISSoc13, transposase orfAchromosome CDS2505501 378 + 0.44709
NA CYB_0081 ISSoc8, transposasechromosome CDS95176 1155 + 0.555844
NA CYB_2410 ISSoc1, transposasechromosome CDS2506709 1149 + 0.549173
NA CYB_1091 ISSoc11, transposase orfAchromosome CDS1126685 774 - 0.542636
NA CYB_0025 ISSoc2, resolvasechromosome CDS31635 594 + 0.521886
NA CYB_1090 ISSoc11, transposase orfBchromosome CDS1126243 237 - 0.561181
NA CYB_0258 ISSoc8, transposasechromosome CDS269597 1155 + 0.566234
NA CYB_2454 ISSoc1, transposasechromosome CDS2553364 1194 - 0.569514
NA CYB_1724 conserved hypothetical proteinchromosome CDS1804652 2799 + 0.518757
NA CYB_1276 ISSoc13, transposase orfAchromosome CDS1332516 378 - 0.449735
NA CYB_1672 ISSoc13, transposase orfBchromosome CDS1750146 408 - 0.436274
NA CYB_2638 ISSoc13, transposase orfAchromosome CDS2728451 378 + 0.449735
NA CYB_1566 ISSoc13, transposase orfBchromosome CDS1639016 408 - 0.431373
NA CYB_0041 ISSoc1, transposasechromosome CDS52431 1218 - 0.551724
NA CYB_1722 ISSoc1, transposasechromosome CDS1803090 1194 - 0.546901
NA CYB_2404 uracil-DNA glycosylase, family 4chromosome CDS2502643 621 - 0.597423
NA CYB_0518 ISSoc9, transposasechromosome CDS532982 1179 - 0.608991
NA CYB_1733 putative methyltransferasechromosome CDS1814789 552 + 0.625
NA CYB_0634 hypothetical proteinchromosome CDS645805 192 - 0.578125
NA CYB_0007 hypothetical proteinchromosome CDS6533 588 + 0.598639
NA CYB_1023 ISSoc1, transposasechromosome CDS1064976 1194 - 0.544389
NA CYB_1140 transposase, truncationchromosome CDS1176691 708 - 0.531073
NA CYB_1227 ISSoc1, transposasechromosome CDS1267757 1236 + 0.579288
NA CYB_2174 ISSoc7, transposasechromosome CDS2277227 1206 - 0.572968
NA CYB_2662 ISSoc13, transposase orfAchromosome CDS2750457 378 + 0.44709
NA CYB_1522 serine/threonine protein kinasechromosome CDS1601051 1662 + 0.605295
NA CYB_2910 ISSoc1, transposasechromosome CDS3008653 1218 + 0.545977
NA CYB_2100 helicase, UvrD/REP familychromosome CDS2194342 2160 - 0.617593
NA CYB_1763 conserved hypothetical proteinchromosome CDS1847265 465 - 0.597849
NA CYB_2312 ISSoc11, transposase orfBchromosome CDS2423643 264 - 0.560606
NA CYB_1971 Ser/Thr protein phosphatase family proteinchromosome CDS2070304 1293 - 0.592421
NA CYB_0329 ISSoc1, transposasechromosome CDS345731 1194 - 0.551926
NA CYB_2249 ISSoc13, transposase orfBchromosome CDS2353708 408 - 0.431373
NA CYB_0814 ISSoc9, transposasechromosome CDS842718 1227 - 0.618582
NA CYB_1275 ISSoc13, transposase orfBchromosome CDS1332151 408 - 0.428922
NA CYB_1194 WD-repeat/protein kinase domain proteinchromosome CDS1233137 2280 - 0.630263
NA CYB_2747 hydrolase, NUDIX familychromosome CDS2842241 498 + 0.604418
NA CYB_2408 ISSoc13, transposase orfBchromosome CDS2505836 408 + 0.431373
NA CYB_2485 ISSoc11, transposase orfBchromosome CDS2582271 264 + 0.560606
NA CYB_0204 ISSoc13, transposase orfAchromosome CDS214819 378 - 0.44709
NA CYB_2817 DNA-3-methyladenine glycosylasechromosome CDS2920310 579 - 0.642487
NA CYB_0587 conserved hypothetical proteinchromosome CDS593853 1080 - 0.607407
NA CYB_2263 ISSoc9, transposasechromosome CDS2368188 1275 - 0.631373
NA CYB_1099 putative DNA polymerase III, delta' subunitchromosome CDS1134770 1032 - 0.638566
NA CYB_0233 ISSoc1, transposasechromosome CDS241643 1194 + 0.568677
NA CYB_2663 ISSoc13, transposase orfBchromosome CDS2750792 408 + 0.428922
NA CYB_1210 ISSoc2, transposase, truncationchromosome CDS1256771 624 - 0.540064
NA CYB_2696 ISSoc12, transposasechromosome CDS2783382 1263 - 0.508314
NA CYB_1742 ISSoc8, transposasechromosome CDS1824952 1155 - 0.557576
NA CYB_0589 CRISPR-associated RAMP proteinchromosome CDS595384 981 - 0.604485
NA CYB_0074 ISSoc11, transposase orfAchromosome CDS86288 774 + 0.5323
NA CYB_1673 ISSoc13, transposase orfAchromosome CDS1750511 378 - 0.449735
NA CYB_1107 exonuclease SbcCchromosome CDS1142684 3318 + 0.615431
NA CYB_2714 ISSoc9, transposasechromosome CDS2804326 1770 + 0.641808
NA CYB_1727 helicase, Snf2 familychromosome CDS1808499 2712 + 0.531342
NA CYB_2591 ISSoc13, transposase orfBchromosome CDS2692188 408 - 0.431373
NA CYB_0637 protein kinasechromosome CDS648160 1605 + 0.611215
NA CYB_2068 ISSoc13, transposase orfBchromosome CDS2165636 408 + 0.431373
NA CYB_2557 ISSoc1, transposasechromosome CDS2661653 1218 - 0.568965
NA CYB_1092 ISSoc13, transposase orfAchromosome CDS1127859 378 + 0.44709
NA CYB_1973 conserved hypothetical proteinchromosome CDS2072926 492 + 0.563008
NA CYB_2119 conserved hypothetical protein TIGR00252chromosome CDS2213302 402 + 0.594527
NA CYB_2657 ISSoc8, transposasechromosome CDS2745262 1155 - 0.553247
NA CYB_1093 ISSoc13, transposase orfBchromosome CDS1128194 408 + 0.431373
NA CYB_2639 ISSoc13, transposase orfBchromosome CDS2728786 408 + 0.428922
NA CYB_1017 site-specific recombinase, resolvase familychromosome CDS1056240 1287 - 0.631702
NA CYB_2468 ISSoc1, transposasechromosome CDS2565690 1194 + 0.561977
NA CYB_2707 ISSoc1, transposasechromosome CDS2796783 1218 + 0.553366
NA CYB_2440 putative uracil-DNA glycosylase, family 4chromosome CDS2541683 723 + 0.634855
NA CYB_2147 ISSoc1, transposasechromosome CDS2247372 1194 + 0.551926
NA CYB_0353 ISSoc9, transposasechromosome CDS369859 1362 + 0.620411
NA CYB_2117 ISSoc1, transposasechromosome CDS2210859 1194 - 0.552764
NA CYB_0117 putative single-strand binding proteinchromosome CDS131259 357 + 0.591036
NA CYB_0008 type II DNA topoisomerase, A subunitchromosome CDS7143 2460 - 0.628455
NA CYB_1864 serine/threonine protein kinasechromosome CDS1945812 1971 + 0.605277
NA CYB_0259 hypothetical proteinchromosome CDS270933 4101 + 0.547184
NA CYB_2026 ISSoc1, transposasechromosome CDS2128027 1194 - 0.541039
NA CYB_0620 ISSoc1, transposasechromosome CDS629485 1218 + 0.568965
NA CYB_0630 ISSoc1, transposasechromosome CDS638633 1218 + 0.558292
NA CYB_0313 conserved hypothetical proteinchromosome CDS328628 828 - 0.600242
NA CYB_2538 ISSoc1, transposasechromosome CDS2644165 1194 - 0.551089
NA CYB_2151 base excision DNA repair protein, HhH-GPD familychromosome CDS2252545 639 - 0.629108
NA CYB_1347 conserved domain proteinchromosome CDS1415906 1656 - 0.580314
NA CYB_1322 ISSoc1, transposasechromosome CDS1384266 1194 - 0.562814
NA CYB_2126 ISSoc1, transposasechromosome CDS2219259 1212 + 0.559406
NA CYB_0018 ISSoc2, transposasechromosome CDS21294 1281 - 0.540203
NA CYB_1259 ISSoc1, transposasechromosome CDS1316313 1236 - 0.571197
NA CYB_1042 ISSoc1, transposasechromosome CDS1083185 1242 + 0.555556
NA CYB_2899 hypothetical proteinchromosome CDS2998621 507 - 0.575937
NA CYB_1053 putative transposasechromosome CDS1092095 1257 - 0.571997
NA CYB_2071 ISSoc1, transposasechromosome CDS2168361 1155 - 0.560173
NA CYB_2715 D12 class N6 adenine-specific DNA methyltransferasechromosome CDS2806460 981 - 0.588175
NA CYB_1567 ISSoc13, transposase orfAchromosome CDS1639381 378 - 0.444444
NA CYB_0564 helicase, UvrD/REP familychromosome CDS573326 1533 + 0.586432
apcA CYB_1438 allophycocyanin, alpha subunitchromosome CDS1508399 486 + 0.584362
cas1 CYB_0835 CRISPR-associated protein Cas1chromosome CDS867715 990 - 0.510101
cas2 CYB_0834 CRISPR-associated protein Cas2chromosome CDS867437 279 - 0.555556
cmr4 CYB_0840 CRISPR-associated RAMP protein, Cmr4 familychromosome CDS871945 771 - 0.536965
dnaA CYB_0001 chromosomal replication initiator protein DnaAchromosome CDS64 1404 + 0.566239
dnaB CYB_1081 replicative DNA helicasechromosome CDS1116586 1776 + 0.588964
dnaE CYB_1183 DNA polymerase III, alpha subunitchromosome CDS1218522 3498 - 0.525729
dnaG CYB_1520 DNA primasechromosome CDS1596008 1941 + 0.582689
dnaN CYB_1539 DNA polymerase III, beta subunitchromosome CDS1615213 1320 - 0.612121
dnaX CYB_1304 DNA polymerase III, subunits gamma and tauchromosome CDS1366407 2340 - 0.622222
dprA CYB_0678 DNA protecting protein DprAchromosome CDS693812 1158 - 0.639033
gvpV CYB_2445 gas vesicle protein Vchromosome CDS2546377 294 + 0.612245
gyrA CYB_1609 DNA gyrase, A subunitchromosome CDS1679987 2529 - 0.625939
gyrB CYB_0322 DNA gyrase, B subunitchromosome CDS337816 1929 - 0.574391
holA CYB_2699 DNA polymerase III, delta subunitchromosome CDS2788734 993 - 0.572004
hup-1 CYB_0804 DNA-binding protein HUchromosome CDS830329 588 - 0.598639
hup-2 CYB_0896 DNA-binding protein HUchromosome CDS929515 306 + 0.542484
ligA CYB_1335 DNA ligase, NAD-dependentchromosome CDS1397455 2061 + 0.629791
mfd CYB_1207 transcription-repair coupling factorchromosome CDS1250050 3477 - 0.598217
mutM CYB_1244 formamidopyrimidine-DNA glycosylasechromosome CDS1292499 840 - 0.607143
mutS CYB_2731 DNA mismatch repair protein MutSchromosome CDS2823703 2655 + 0.631262
mutY CYB_0752 A/G-specific adenine glycosylasechromosome CDS775405 1077 + 0.583101
nrdJ CYB_0734 ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein containingchromosome CDS755731 3414 + 0.607206
nth CYB_0991 endonuclease IIIchromosome CDS1026867 705 + 0.607092
nucH CYB_0109 thermonucleasechromosome CDS124060 534 - 0.578652
pcrA CYB_1368 ATP-dependent DNA helicase PcrAchromosome CDS1437380 2364 - 0.52665
phrB-1 CYB_0202 deoxyribodipyrimidine photolyasechromosome CDS212976 1464 + 0.618852
phrB-2 CYB_0803 deoxyribodipyrimidine photolyasechromosome CDS828856 1461 - 0.609856
polA CYB_0126 DNA polymerase Ichromosome CDS137266 2796 - 0.533619
priA CYB_2227 primosomal protein N'chromosome CDS2331655 2406 + 0.657523
radC CYB_1994 DNA repair protein RadCchromosome CDS2099888 720 - 0.618056
recA CYB_1961 recA proteinchromosome CDS2056922 1077 + 0.562674
recF CYB_2719 DNA replication and repair protein RecFchromosome CDS2811529 1143 - 0.635171
recG CYB_2808 ATP-dependent DNA helicase RecGchromosome CDS2908804 2514 - 0.622514
recJ-1 CYB_0828 single-stranded-DNA-specific exonuclease RecJchromosome CDS858587 2673 + 0.628133
recJ-2 CYB_1106 single-stranded-DNA-specific exonuclease RecJchromosome CDS1140273 2277 + 0.63285
recN CYB_0776 DNA repair protein RecNchromosome CDS797824 1707 - 0.605155
recO CYB_2559 DNA repair protein RecOchromosome CDS2663676 858 + 0.607226
recQ CYB_0669 ATP-dependent DNA helicase RecQchromosome CDS683073 1416 - 0.631356
recR CYB_2895 recombination protein RecRchromosome CDS2993670 600 + 0.615
rnhA CYB_1340 ribonuclease Hchromosome CDS1405600 510 + 0.619608
rnhB CYB_1824 ribonuclease HIIchromosome CDS1916462 642 + 0.627726
ruvA CYB_0546 Holliday junction DNA helicase RuvAchromosome CDS558347 615 + 0.627642
ruvC CYB_0493 crossover junction endodeoxyribonuclease RuvCchromosome CDS506211 507 + 0.587771
sbcD CYB_2775 nuclease SbcCD, D subunitchromosome CDS2869975 1305 + 0.591571
topA CYB_2358 DNA topoisomerase Ichromosome CDS2463813 2802 + 0.612063
uvrA CYB_1196 excinuclease ABC, A subunitchromosome CDS1236891 2904 - 0.610882
uvrB CYB_0807 excinuclease ABC, B subunitchromosome CDS833613 2088 + 0.535441
uvrC CYB_1251 excinuclease ABC, C subunitchromosome CDS1300591 1872 - 0.551282
xseA CYB_0088 exodeoxyribonuclease VII, large subunitchromosome CDS104064 1230 + 0.617073
xseB CYB_0089 exodeoxyribonuclease VII, small subunitchromosome CDS105274 237 + 0.552743
xth CYB_0231 exodeoxyribonuclease IIIchromosome CDS240593 786 + 0.562341