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2024-05-01 06:04:19

Gene list

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COG category: Replication, recombination and repair
Organism: Synechococcus sp. JA-3-3Ab, JA-3-3Ab

Number of genes found: 229

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Synechococcus sp. JA-3-3Ab, JA-3-3Ab
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CYA_1860 conserved hypothetical proteinchromosome CDS1865040 804 - 0.645522
NA CYA_0721 exonuclease, SbcC familychromosome CDS723925 3291 + 0.64175
NA CYA_0846 base excision DNA repair protein, HhH-GPD familychromosome CDS855551 669 - 0.630792
NA CYA_2722 ISSoc4, transposase orfAchromosome CDS2740043 405 + 0.464198
NA CYA_0877 CRISPR-associated RAMP protein, SSO1426 familychromosome CDS881677 843 - 0.635824
NA CYA_1236 conserved hypothetical proteinchromosome CDS1247523 417 + 0.642686
NA CYA_2581 ISSoc3, orfB transposasechromosome CDS2604688 1272 + 0.586478
NA CYA_0156 ISSoc3, orfA transposasechromosome CDS152388 474 - 0.521097
NA CYA_2724 ISSoc3, orfA transposase, interruption-Cchromosome CDS2741015 315 + 0.526984
NA CYA_0126 putative nuclease SbcCD, D subunitchromosome CDS117811 1305 + 0.613027
NA CYA_0158 ISSoc3, orfB transposasechromosome CDS152817 1272 + 0.585692
NA CYA_1958 ISSoc3, orfA transposasechromosome CDS1968830 477 - 0.513627
NA CYA_2424 ISSoc2, transposasechromosome CDS2433346 1281 - 0.555035
NA CYA_1374 ISSoc2, resolvasechromosome CDS1384977 618 + 0.529126
NA CYA_2002 ISSoc2, resolvasechromosome CDS2018988 618 - 0.535599
NA CYA_2425 ISSoc2, resolvasechromosome CDS2434481 594 - 0.518519
NA CYA_1360 ISSoc4, transposase orfBchromosome CDS1368175 567 + 0.45679
NA CYA_0436 ISSoc6, orfB transposasechromosome CDS455921 1251 - 0.476419
NA CYA_1293 putative type III restriction-modification system, Res subunitchromosome CDS1301518 2814 + 0.598081
NA CYA_0956 D12 class N6 adenine-specific DNA methyltransferasechromosome CDS969244 951 - 0.471083
NA CYA_1291 ISSoc4, transposase orfAchromosome CDS1300763 399 - 0.461153
NA CYA_0373 serine/threonine protein kinasechromosome CDS388505 1953 - 0.626216
NA CYA_2439 ISSoc2, resolvasechromosome CDS2450193 594 + 0.515152
NA CYA_0053 ISSoc4, transposase orfABchromosome CDS51700 948 - 0.456751
NA CYA_2638 ISSoc3, orfA transposase, interruption-Nchromosome CDS2653525 231 + 0.497835
NA CYA_2158 ISSoc1, transposasechromosome CDS2170715 1194 + 0.552764
NA CYA_1439 ISSoc2, resolvasechromosome CDS1446256 594 - 0.530303
NA CYA_1642 putative transposase, truncationchromosome CDS1642886 243 - 0.559671
NA CYA_1956 ISSoc5, transposasechromosome CDS1966855 1227 + 0.560717
NA CYA_2649 putative methyltransferasechromosome CDS2665895 552 - 0.664855
NA CYA_0777 ISSoc5, transposasechromosome CDS782541 1230 - 0.554472
NA CYA_0038 ISSoc4, transposase orfBchromosome CDS34937 552 + 0.46558
NA CYA_1375 ISSoc2, transposasechromosome CDS1385449 1281 + 0.556596
NA CYA_2637 ISSoc4, transposase orfBchromosome CDS2653693 567 - 0.455026
NA CYA_2012 putative transposase, truncationchromosome CDS2027934 543 + 0.530387
NA CYA_0008 type II DNA topoisomerase, A subunitchromosome CDS7057 2550 - 0.648235
NA CYA_1137 ISSoc3, orfA transposasechromosome CDS1161246 477 + 0.519916
NA CYA_2262 protein kinasechromosome CDS2269929 2166 - 0.609418
NA CYA_0620 ISSoc1, transposasechromosome CDS629981 1194 - 0.558626
NA CYA_2582 MutS2 family proteinchromosome CDS2606279 2400 + 0.654167
NA CYA_2415 ISSoc3, orfA transposasechromosome CDS2426212 477 - 0.51782
NA CYA_2001 ISSoc2, transposasechromosome CDS2017853 1281 - 0.555035
NA CYA_1772 ISSoc2, resolvasechromosome CDS1778902 594 + 0.516835
NA CYA_1661 ISSoc4, transposase orfAchromosome CDS1663936 399 + 0.461153
NA CYA_0091 ISSoc1, transposasechromosome CDS88306 1182 - 0.591371
NA CYA_1311 ISSoc4, transposase orfABchromosome CDS1321050 933 + 0.458735
NA CYA_2684 ISSoc2, resolvasechromosome CDS2698806 618 + 0.538835
NA CYA_0727 ISSoc2, resolvasechromosome CDS732514 594 - 0.521886
NA CYA_1937 ISSoc2, resolvasechromosome CDS1948622 618 + 0.532362
NA CYA_2685 ISSoc2, transposasechromosome CDS2699278 1281 + 0.552693
NA CYA_1940 thermonucleasechromosome CDS1951110 525 - 0.611429
NA CYA_1977 ISSoc7, transposasechromosome CDS1995330 1230 + 0.548781
NA CYA_2639 ISSoc4, transposase orfAchromosome CDS2654241 399 - 0.463659
NA CYA_2253 uracil-DNA glycosylase, family 4chromosome CDS2262759 621 + 0.624799
NA CYA_2876 putative single-strand binding proteinchromosome CDS2893038 399 + 0.62406
NA CYA_0687 ISSoc1, transposasechromosome CDS693323 1212 + 0.559406
NA CYA_0322 putative helicasechromosome CDS338498 2895 - 0.633851
NA CYA_0437 ISSoc6, orfA transposasechromosome CDS457222 405 + 0.454321
NA CYA_2146 serine/threonine protein kinasechromosome CDS2158113 1932 + 0.645963
NA CYA_1472 ISSoc2, resolvasechromosome CDS1479754 618 - 0.533981
NA CYA_2628 putative ATP-dependent DNA helicase RecQchromosome CDS2645144 1416 + 0.663136
NA CYA_2343 ISSoc1, transposase, truncationchromosome CDS2350437 426 - 0.619718
NA CYA_2271 conserved hypothetical proteinchromosome CDS2279868 633 - 0.63981
NA CYA_2005 staphylococcal nuclease domain proteinchromosome CDS2022286 978 + 0.605317
NA CYA_1959 ISSoc3, orfB transposasechromosome CDS1969262 1272 + 0.583333
NA CYA_2580 ISSoc3, orfA transposasechromosome CDS2604256 477 - 0.515723
NA CYA_1502 hypothetical proteinchromosome CDS1510605 348 - 0.531609
NA CYA_2221 ISSoc3, orfA transposasechromosome CDS2237234 477 + 0.515723
NA CYA_1890 ISSoc2, transposasechromosome CDS1897469 1281 - 0.558938
NA CYA_2250 ISSoc2, resolvasechromosome CDS2259862 618 - 0.535599
NA CYA_2034 putative transposasechromosome CDS2051443 1281 - 0.52381
NA CYA_2418 hypothetical proteinchromosome CDS2429181 648 - 0.58642
NA CYA_0549 ISSoc3, orfA transposasechromosome CDS563304 477 - 0.519916
NA CYA_1263 hypothetical proteinchromosome CDS1279028 507 + 0.595661
NA CYA_2636 ISSoc3, orfB transposasechromosome CDS2652298 1272 - 0.584119
NA CYA_0680 conserved hypothetical protein TIGR00252chromosome CDS687319 402 + 0.594527
NA CYA_1359 ISSoc5, transposase, truncationchromosome CDS1368726 570 - 0.538597
NA CYA_2573 ISSoc2, transposasechromosome CDS2598896 1281 + 0.559719
NA CYA_2845 ISSoc4, transposase orfAchromosome CDS2862567 399 + 0.463659
NA CYA_0981 ISSoc1, transposasechromosome CDS994257 1212 - 0.55033
NA CYA_2249 ISSoc2, transposasechromosome CDS2258727 1281 - 0.557377
NA CYA_0042 WD domain, G-beta repeat proteinchromosome CDS39584 2109 + 0.63964
NA CYA_1662 ISSoc4, transposase orfBchromosome CDS1664316 567 + 0.45679
NA CYA_1913 ISSoc3, orfA transposasechromosome CDS1922540 477 - 0.515723
NA CYA_2616 putative DNA mismatch repair protein MutLchromosome CDS2632185 1752 + 0.645548
NA CYA_0068 ISSoc3, orfA transposasechromosome CDS65283 477 + 0.51782
NA CYA_2756 protein kinasechromosome CDS2778001 1584 + 0.63005
NA CYA_1279 ISSoc4, transposase orfABchromosome CDS1290363 948 - 0.456751
NA CYA_1179 conserved hypothetical proteinchromosome CDS1193692 1953 + 0.637993
NA CYA_0701 hypothetical proteinchromosome CDS707669 507 + 0.579882
NA CYA_2163 hydrolase, NUDIX familychromosome CDS2175829 480 - 0.620833
NA CYA_0012 hypothetical proteinchromosome CDS13486 735 - 0.45034
NA CYA_0301 DNA-3-methyladenine glycosylasechromosome CDS306404 588 + 0.647959
NA CYA_1289 ISSoc4, transposase orfBchromosome CDS1300215 567 - 0.45679
NA CYA_1060 putative methylated-DNA-[protein]-cysteine S-methyltransferasechromosome CDS1077377 333 - 0.612613
NA CYA_2440 ISSoc2, transposasechromosome CDS2450641 1281 + 0.557377
NA CYA_0707 conserved hypothetical protein TIGR00250chromosome CDS715289 480 - 0.660417
NA CYA_1938 ISSoc2, transposasechromosome CDS1949094 1281 + 0.556596
NA CYA_0708 conserved hypothetical protein TIGR00252chromosome CDS714927 396 + 0.583333
NA CYA_0452 conserved hypothetical proteinchromosome CDS470548 411 - 0.562044
NA CYA_2695 ISSoc2, transposasechromosome CDS2710018 1266 + 0.560032
NA CYA_1585 ISSoc1, transposasechromosome CDS1594890 1218 + 0.564039
NA CYA_0726 ISSoc2, transposasechromosome CDS731379 1281 - 0.555035
NA CYA_0345 ISSoc2, transposasechromosome CDS362789 1281 - 0.556596
NA CYA_2063 ISSoc3, orfB transposasechromosome CDS2083980 1272 - 0.584119
NA CYA_0596 ISSoc2, transposasechromosome CDS607044 1218 + 0.552545
NA CYA_2587 ISSoc3, orfA transposasechromosome CDS2610755 477 + 0.515723
NA CYA_2392 ISSoc2, resolvasechromosome CDS2402868 594 + 0.518519
NA CYA_0346 ISSoc2, resolvasechromosome CDS363924 618 - 0.532362
NA CYA_0999 ISSoc4, transposase orfAchromosome CDS1013063 399 - 0.468672
NA CYA_0690 ISSoc1, transposasechromosome CDS698056 1149 - 0.562228
NA CYA_0853 site-specific recombinase, phage integrase familychromosome CDS862122 930 + 0.64086
NA CYA_0881 CRISPR-associated RAMP proteinchromosome CDS884334 714 - 0.672269
NA CYA_2653 ATP-dependent helicase, DEAD/DEAH box familychromosome CDS2668683 2412 - 0.608209
NA CYA_2135 hydrolase, NUDIX familychromosome CDS2148726 576 - 0.602431
NA CYA_2046 conserved hypothetical proteinchromosome CDS2065899 294 - 0.527211
NA CYA_2064 ISSoc3, orfA transposasechromosome CDS2085207 477 + 0.513627
NA CYA_2389 putative single-strand binding proteinchromosome CDS2399908 357 - 0.605042
NA CYA_0933 hypothetical proteinchromosome CDS943317 1074 + 0.539106
NA CYA_1127 ISSoc4, transposase orfBchromosome CDS1152934 567 + 0.455026
NA CYA_0876 CRISPR-associated RAMP proteinchromosome CDS880648 975 - 0.613333
NA CYA_2355 ISSoc3, orfA transposasechromosome CDS2362620 477 + 0.51782
NA CYA_0887 ISSoc1, transposasechromosome CDS893440 1194 + 0.567002
NA CYA_2846 ISSoc4, transposase orfBchromosome CDS2863004 510 + 0.452941
NA CYA_2640 ISSoc3, orfA transposase, interruption-Cchromosome CDS2654705 315 + 0.51746
NA CYA_0998 ISSoc4, transposase orfBchromosome CDS1012515 567 - 0.455026
NA CYA_0349 UvrD/REP helicase domain proteinchromosome CDS366346 2121 + 0.639321
NA CYA_0395 ISSoc2, transposasechromosome CDS410293 1281 - 0.556596
NA CYA_1891 ISSoc2, resolvasechromosome CDS1898604 594 - 0.521886
NA CYA_0412 putative uracil-DNA glycosylase, family 4chromosome CDS433786 519 + 0.649326
NA CYA_1136 ISSoc3, orfB transposasechromosome CDS1160019 1272 - 0.582547
NA CYA_0737 ISSoc8, transposase, interruption-Nchromosome CDS743274 717 + 0.552301
NA CYA_0704 ISSoc1, transposasechromosome CDS712445 1194 - 0.553601
NA CYA_2709 ISSoc4, transposase orfAchromosome CDS2728530 399 + 0.463659
NA CYA_1181 ISSoc7, transposasechromosome CDS1196824 1206 + 0.548093
NA CYA_2519 RecF/RecN/SMC N terminal domain proteinchromosome CDS2531669 3597 - 0.549903
NA CYA_1128 ISSoc3, orfA transposasechromosome CDS1153631 477 - 0.524109
NA CYA_2721 ISSoc3, orfA transposase, interruption-Nchromosome CDS2739836 174 + 0.477012
NA CYA_2520 Ser/Thr protein phosphatase family proteinchromosome CDS2535268 1269 - 0.610717
NA CYA_2859 serine/threonine protein kinasechromosome CDS2874783 1593 - 0.632141
NA CYA_2393 ISSoc2, transposasechromosome CDS2403316 1281 + 0.559719
NA CYA_1145 conserved hypothetical proteinchromosome CDS1169041 1539 + 0.637427
NA CYA_0808 ISSoc2, resolvasechromosome CDS819298 594 - 0.523569
NA CYA_0739 ISSoc8, transposase, interruption-Cchromosome CDS744741 363 + 0.550964
NA CYA_0595 ISSoc2, resolvasechromosome CDS606572 618 + 0.532362
NA CYA_1886 hypothetical proteinchromosome CDS1891482 4089 - 0.526779
NA CYA_1572 conserved hypothetical proteinchromosome CDS1583158 339 + 0.572271
NA CYA_1471 ISSoc2, transposasechromosome CDS1478619 1281 - 0.557377
NA CYA_0397 ISSoc2, resolvasechromosome CDS411428 594 - 0.521886
NA CYA_1126 ISSoc4, transposase orfAchromosome CDS1152554 399 + 0.468672
NA CYA_1440 ISSoc14, transposase, truncationchromosome CDS1446917 459 - 0.540305
NA CYA_2694 ISSoc2, resolvasechromosome CDS2709546 618 + 0.535599
NA CYA_0807 ISSoc2, transposasechromosome CDS818226 1218 - 0.555008
NA CYA_0226 ISSoc7, transposasechromosome CDS229317 1206 - 0.548093
NA CYA_0037 ISSoc4, transposase orfAchromosome CDS34557 399 + 0.466165
NA CYA_2069 conserved hypothetical proteinchromosome CDS2088582 366 + 0.560109
NA CYA_2381 site-specific recombinase, resolvase familychromosome CDS2389808 1287 + 0.639472
NA CYA_0874 putative CRISPR-associated RAMP proteinchromosome CDS879144 1053 - 0.613485
NA CYA_1645 ISSoc2, resolvasechromosome CDS1644320 618 + 0.529126
NA CYA_1438 ISSoc2, transposasechromosome CDS1445169 1233 - 0.555556
NA CYA_0767 ISSoc1, transposasechromosome CDS774780 1194 - 0.553601
NA CYA_1646 ISSoc2, transposasechromosome CDS1644792 1281 + 0.555816
NA CYA_2780 hydrolase, TatD familychromosome CDS2799667 786 - 0.64631
NA CYA_1882 serine/threonine protein kinasechromosome CDS1888007 1674 + 0.644564
NA CYA_2010 ISSoc4, transposase orfAchromosome CDS2026943 405 + 0.464198
NA CYA_2572 ISSoc2, resolvasechromosome CDS2598424 618 + 0.522654
NA CYA_1358 ISSoc4, transposase orfAchromosome CDS1367795 399 + 0.463659
NA CYA_1773 ISSoc2, transposasechromosome CDS1779350 1281 + 0.557377
NA CYA_2081 ISSoc4, transposase orfBchromosome CDS2101216 552 - 0.45471
NA CYA_0209 serine/threonine protein kinasechromosome CDS216419 1845 - 0.660705
NA CYA_2710 ISSoc4, transposase orfBchromosome CDS2728910 567 + 0.453263
NA CYA_1801 conserved hypothetical proteinchromosome CDS1802690 1125 + 0.432
NA CYA_1604 ISSoc4, transposase orfABchromosome CDS1612112 948 + 0.456751
NA CYA_2333 protein kinase domain/TPR repeat proteinchromosome CDS2337765 2859 - 0.637636
NA CYA_2082 ISSoc4, transposase orfAchromosome CDS2101749 399 - 0.466165
cas1-1 CYA_0729 CRISPR-associated protein Cas1chromosome CDS734001 948 - 0.50211
cas2-1 CYA_0135 CRISPR-associated protein Cas2chromosome CDS130865 315 - 0.590476
cas2-3 CYA_0885 CRISPR-associated protein Cas2chromosome CDS892609 279 - 0.591398
cas2-4 CYA_2539 CRISPR-associated protein Cas2chromosome CDS2559707 279 - 0.562724
cmr4 CYA_2545 CRISPR-associated RAMP protein, Cmr4 familychromosome CDS2564341 771 - 0.553826
cmr6 CYA_2542 CRISPR-associated RAMP protein, Cmr6 familychromosome CDS2561306 1959 - 0.557938
dnaA CYA_0001 chromosomal replication initiator protein DnaAchromosome CDS71 1404 + 0.571937
dnaB CYA_1550 replicative DNA helicasechromosome CDS1559184 1776 - 0.603041
dnaE CYA_0057 DNA polymerase III, alpha subunitchromosome CDS53979 3486 + 0.546758
dnaG CYA_2329 DNA primasechromosome CDS2332788 1896 - 0.616561
dnaN CYA_1647 DNA polymerase III, beta subunitchromosome CDS1646277 1365 - 0.621245
dnaX CYA_0563 DNA polymerase III, subunits gamma and tauchromosome CDS575990 2079 - 0.63925
dprA CYA_2512 DNA protecting protein DprAchromosome CDS2522681 1146 + 0.659686
gyrA CYA_1415 DNA gyrase, A subunitchromosome CDS1422999 2541 + 0.634789
gyrB CYA_1523 DNA gyrase, B subunitchromosome CDS1535547 1929 - 0.612234
holA CYA_1511 DNA polymerase III, delta subunitchromosome CDS1519335 978 + 0.5818
holB CYA_1270 DNA polymerase III, delta' subunitchromosome CDS1285137 1014 - 0.648915
hup-1 CYA_0305 DNA-binding protein HUchromosome CDS312014 327 - 0.636086
hup-2 CYA_0940 DNA-binding protein HUchromosome CDS951098 318 + 0.566038
ligA CYA_0803 DNA ligase, NAD-dependentchromosome CDS814452 2022 - 0.653314
mfd CYA_1763 transcription-repair coupling factorchromosome CDS1767740 3471 - 0.60242
mutM CYA_0203 formamidopyrimidine-DNA glycosylasechromosome CDS208311 852 - 0.658451
mutS CYA_2035 DNA mismatch repair protein MutSchromosome CDS2052972 2649 + 0.652322
mutY CYA_0809 A/G-specific adenine glycosylasechromosome CDS820043 1077 - 0.620241
nrdJ CYA_2169 ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatiningchromosome CDS2181900 3468 - 0.623702
nth CYA_0912 endonuclease IIIchromosome CDS921363 696 - 0.642241
pcrA CYA_1321 ATP-dependent DNA helicase PcrAchromosome CDS1336315 2331 - 0.565423
phrB-1 CYA_0303 deoxyribodipyrimidine photolyasechromosome CDS310546 1467 - 0.658487
phrB-2 CYA_0780 deoxyribodipyrimidine photolyasechromosome CDS784262 1440 + 0.65
polA CYA_0531 DNA polymerase Ichromosome CDS546670 2787 + 0.564047
priA CYA_1466 primosomal protein N'chromosome CDS1472452 2394 + 0.665831
radC CYA_1690 DNA repair protein RadCchromosome CDS1689739 732 + 0.646175
rbcX CYA_1195 chaperon-like protein RbcXchromosome CDS1208699 408 + 0.602941
recA CYA_1092 recA proteinchromosome CDS1113642 1077 + 0.589601
recF CYA_2022 DNA replication and repair protein RecFchromosome CDS2039458 1143 - 0.656168
recG CYA_2013 ATP-dependent DNA helicase RecGchromosome CDS2028491 2322 - 0.647287
recJ-1 CYA_1120 single-stranded-DNA-specific exonuclease RecJchromosome CDS1146623 2229 - 0.645581
recJ-2 CYA_2826 single-stranded-DNA-specific exonuclease RecJchromosome CDS2843803 2457 + 0.64998
recN CYA_2624 DNA repair protein RecNchromosome CDS2641479 1707 - 0.636204
recO CYA_1394 DNA repair protein RecOchromosome CDS1400048 906 - 0.631347
recR CYA_1368 recombination protein RecRchromosome CDS1379706 600 - 0.628333
rnhA CYA_0798 ribonuclease Hchromosome CDS808142 501 - 0.61477
rnhB CYA_0822 ribonuclease HIIchromosome CDS836795 666 + 0.674174
ruvA CYA_0490 Holliday junction DNA helicase RuvAchromosome CDS507552 615 + 0.634146
ruvB-1 CYA_1812 Holliday junction DNA helicase RuvBchromosome CDS1815754 1137 + 0.604222
ruvB-2 CYA_1850 Holliday junction DNA helicase RuvBchromosome CDS1851392 1113 + 0.629829
ruvC CYA_1905 crossover junction endodeoxyribonuclease RuvCchromosome CDS1915477 582 + 0.647766
topA CYA_0561 DNA topoisomerase Ichromosome CDS572482 2661 - 0.627208
uvrA CYA_0784 excinuclease ABC, A subunitchromosome CDS790054 2901 + 0.632541
uvrB CYA_2564 excinuclease ABC, B subunitchromosome CDS2587475 2088 - 0.555077
uvrC CYA_0207 excinuclease ABC, C subunitchromosome CDS211884 1866 - 0.581994
xseA CYA_1976 exodeoxyribonuclease VII, large subunitchromosome CDS1994055 1236 - 0.673948
xseB CYA_1975 exodeoxyribonuclease VII, small subunitchromosome CDS1993838 237 - 0.586498
xth CYA_0466 exodeoxyribonuclease IIIchromosome CDS480687 786 + 0.610687