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2024-05-03 16:57:24

Gene list

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COG category: Replication, recombination and repair
Organism: Bacteriophage Sal3

Number of genes found: 133

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bacteriophage Sal3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LSL_0432 Adenine-specific methyltransferasechromosome CDS470841 1041 + 0.28146
NA LSL_0794 Phage tail tape mesure proteinchromosome CDS813863 3825 + 0.349542
NA LSL_0733 Transposase ISLasa9a, IS200-IS605 familychromosome CDS780847 1278 + 0.311424
NA LSL_0414 Transposase ISLasa4f, ISL3 familychromosome CDS458249 1290 - 0.305426
NA LSL_0964 Phosphohydrolase, MutT/nudix family proteinchromosome CDS984492 567 + 0.328042
NA LSL_0407 Transposase ISLasa4e, ISL3 familychromosome CDS453375 1290 - 0.305426
NA LSL_1485 Conserved hypothetical proteinchromosome CDS1541992 825 - 0.332121
NA LSL_1386 Transposase ISLasa4r, ISL3 familychromosome CDS1458780 1290 - 0.305426
NA LSL_1391 Hypothetical proteinchromosome CDS1464041 1146 - 0.27836
NA LSL_0885 DNA-binding protein HUchromosome CDS909069 276 - 0.398551
NA LSL_0948 Integrase/recombinase, XerC/CodV familychromosome CDS974435 897 - 0.351171
NA LSL_0228 Ribonuclease M5chromosome CDS282928 558 + 0.33871
NA LSL_0547 Hypothetical proteinchromosome CDS588945 2130 + 0.280751
NA LSL_0732 Transposase ISLasa8a, IS200-IS605 familychromosome CDS780316 432 - 0.3125
NA LSL_0049 Transposase ISLasa1a, IS1223 familychromosome CDS56327 519 + 0.342967
NA LSL_0934 Integrase/recombinase, XerD/RipX familychromosome CDS964160 894 - 0.334452
NA LSL_0609 Transposase ISLasa4j, ISL3 familychromosome CDS649111 1290 - 0.305426
NA LSL_1075 Septation ring formation regulatorchromosome CDS1099402 1713 - 0.310566
NA LSL_1471 Transposase ISLasa4s, ISL3 familychromosome CDS1531201 1290 - 0.305426
NA LSL_0093 Uracil DNA glycosylase superfamily proteinchromosome CDS113377 597 + 0.329983
NA LSL_1381 Transposase ISLasa4q, ISL3 familychromosome CDS1454149 1290 + 0.305426
NA LSL_1207 ComF operon protein 1chromosome CDS1239115 1338 - 0.301196
NA LSL_0613b Primosomal protein n-primchromosome CDS653814 2379 + 0.313157
NA LSL_0050 Transposase ISLasa3a, IS200 familychromosome CDS57833 468 - 0.288462
NA LSL_1398 Ribonuclease M5chromosome CDS1469230 570 - 0.454386
NA LSL_1565 Conserved hypothetical proteinchromosome CDS1647690 2040 - 0.27451
NA LSL_0498 Transposase ISLasa4i, ISL3 familychromosome CDS547229 1290 - 0.306202
NA LSL_0752 Phage helicasechromosome CDS788674 1224 + 0.293301
NA LSL_1607 ATP-dependent nuclease subunit Achromosome CDS1687868 3747 - 0.32506
NA LSL_1564 DNA helicasechromosome CDS1646014 1692 - 0.276005
NA LSL_0510 Conserved hypothetical proteinchromosome CDS556783 288 + 0.260417
NA LSL_0660 Methyltransferasechromosome CDS707435 561 + 0.319073
NA LSL_1301 Transposase ISLasa4n, ISL3 familychromosome CDS1347518 1290 - 0.305426
NA LSL_1624 Transposase ISLasa4u, ISL3 familychromosome CDS1708665 1290 - 0.305426
NA LSL_0332 Conserved hypothetical proteinchromosome CDS361325 2001 + 0.312844
NA LSL_1109 Endonuclease involved in recombinationchromosome CDS1136102 432 - 0.328704
NA LSL_1082 DNA-3-methyladenine glycosylasechromosome CDS1105749 552 - 0.298913
NA LSL_0758 Phage DNA polymerasechromosome CDS793126 1698 + 0.312721
NA LSL_0546 Transposase ISLasa5a, IS3 familychromosome CDS587362 1380 + 0.405797
NA LSL_1079 ATPase, AAA familychromosome CDS1103221 1272 + 0.352987
NA LSL_1015 Transposase ISLasa4l, ISL3 familychromosome CDS1033581 1290 + 0.305426
NA LSL_0844 Hypothetical secreted proteinchromosome CDS861496 1290 + 0.318605
NA LSL_1184 Transposase ISLasa4m, ISL3 familychromosome CDS1220929 1290 + 0.305426
NA LSL_0767 Hypothetical protein, phage associatedchromosome CDS799558 654 + 0.327217
NA LSL_0030 DNA-damage-inducible protein Jchromosome CDS35796 297 + 0.296296
NA LSL_0922 Phosphohydrolase, MutT/nudix family proteinchromosome CDS951623 615 - 0.364228
NA LSL_0586 Transposase ISLasa7, IS3 familychromosome CDS629972 669 - 0.330344
NA LSL_1363 Conserved hypothetical proteinchromosome CDS1428614 2274 - 0.244063
NA LSL_1497 Hypothetical proteinchromosome CDS1553245 474 - 0.274262
NA LSL_0719 DNA processing proteinchromosome CDS763957 861 + 0.31475
NA LSL_1563 Transposase ISLasa4t, ISL3 familychromosome CDS1644609 1290 - 0.305426
NA LSL_0312 Transposase ISLasa4c, ISL3 familychromosome CDS340699 1290 - 0.305426
NA LSL_0585 Transposase ISLasa6a, IS3 familychromosome CDS629058 798 - 0.329574
NA LSL_1342 Transposase ISLasa4p, ISL3 familychromosome CDS1394078 1290 + 0.305426
NA LSL_0839 Conserved hypothetical proteinchromosome CDS857052 1131 + 0.342175
ada LSL_0559 O6-methylguanine-DNA methyltransferasechromosome CDS599192 462 + 0.272727
comEA LSL_0678 ComE operon protein 1chromosome CDS726811 690 + 0.308696
dinG LSL_0686 ATP-dependent helicase, DinG familychromosome CDS735672 2790 + 0.287097
dinP LSL_1162 DNA polymerase IVchromosome CDS1195752 1074 - 0.301676
dnaA LSL_0001 Chromosomal replication initiation proteinchromosome CDS1 1365 + 0.350916
dnaB LSL_1726 Replicative DNA helicasechromosome CDS1807560 1392 - 0.361351
dnaB LSL_0492 Chromosome replication initiation / membrane attachment proteinchromosome CDS541166 1347 + 0.273942
dnaE LSL_0567 DNA polymerase III alpha subunitchromosome CDS606391 4335 + 0.336102
dnaE LSL_0865 DNA polymerase III alpha subunitchromosome CDS885267 3294 + 0.314208
dnaG LSL_0910 DNA primasechromosome CDS933886 1854 - 0.320928
dnaI LSL_0493 Primosomal proteinchromosome CDS542522 930 + 0.297849
dnaN LSL_0002 DNA polymerase III, beta chainchromosome CDS1532 1140 + 0.320175
dnaQ LSL_1149 DNA-directed DNA polymerase III, epsilon chainchromosome CDS1182884 534 + 0.297753
dnaX LSL_1228 DNA polymerase III subunit gamma/tauchromosome CDS1260545 1740 - 0.328736
gyrA LSL_0872 Topoisomerase IV subunit Achromosome CDS895404 2427 + 0.323445
gyrA LSL_0006 DNA gyrase subunit Achromosome CDS6446 2553 + 0.360752
gyrB LSL_0005 DNA gyrase subunit Bchromosome CDS4451 1959 + 0.354262
gyrB LSL_0871 Topoisomerase IV subunit Bchromosome CDS893358 2022 + 0.350643
holA LSL_0681 DNA polymerase III, delta subunitchromosome CDS730304 1023 + 0.28348
holB LSL_1223 DNA polymerase III, delta' subunitchromosome CDS1257561 993 - 0.289023
hsdM LSL_0919 Type I restriction-modification system methylation subunitchromosome CDS946586 1590 - 0.306918
hsdR LSL_0920 Type I restriction-modification system restriction subunitchromosome CDS948193 3015 - 0.322056
hsdS LSL_0916 Type I restriction-modification system specificity subunitchromosome CDS943300 1119 + 0.30563
hsdS LSL_0918 Type I restriction-modification system specificity subunitchromosome CDS945432 1155 - 0.300433
hsdS LSL_0915 Type I restriction-modification system specificity subunitchromosome CDS941848 1206 + 0.293532
lig LSL_1348 NAD-dependent DNA ligasechromosome CDS1401048 2019 - 0.350173
mcrA LSL_0279 Phage endonucleasechromosome CDS308058 531 + 0.357815
mfd LSL_1360 Transcription-repair coupling factorchromosome CDS1422969 3525 - 0.32539
mutL LSL_1127 DNA mismatch repair proteinchromosome CDS1155177 1980 - 0.331313
mutS LSL_1128 DNA mismatch repair proteinchromosome CDS1157166 2631 - 0.325352
mutS LSL_1105 DNA mismatch repair proteinchromosome CDS1132574 2361 - 0.335451
mutT LSL_1014 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS1032867 423 - 0.333333
nei LSL_0489 Formamidopyrimidine-DNA glycosylasechromosome CDS539236 831 + 0.318893
nth LSL_0691 Endonuclease IIIchromosome CDS742431 642 + 0.34891
nudF LSL_0857 ADP-ribose pyrophosphatasechromosome CDS877943 537 + 0.346369
pcrA LSL_1349 ATP-dependent DNA helicasechromosome CDS1403083 2235 - 0.33557
polA LSL_0488 DNA polymerase Ichromosome CDS536545 2679 + 0.298992
radC LSL_1070 DNA repair proteinchromosome CDS1091792 678 - 0.29941
recA LSL_1130 Recombinase Achromosome CDS1161704 1146 - 0.369983
recD LSL_0728 Exodeoxyribonuclease V alpha chainchromosome CDS774802 2475 + 0.326061
recF LSL_0004 DNA replication and repair proteinchromosome CDS3309 1140 + 0.335088
recG LSL_0622 ATP-dependent DNA helicasechromosome CDS665280 2031 + 0.328902
recJ LSL_1091 Single-stranded-DNA-specific exonucleasechromosome CDS1118673 2334 - 0.338475
recN LSL_0539 DNA repair proteinchromosome CDS581287 1668 + 0.311751
recO LSL_0894 DNA repair proteinchromosome CDS917395 783 - 0.292465
recQ LSL_0902 ATP-dependent DNA helicasechromosome CDS923432 1446 - 0.286999
recR LSL_1226 Recombination proteinchromosome CDS1259587 600 - 0.328333
rep LSL_0216 ATP-dependent DNA helicasechromosome CDS268239 2268 - 0.313492
rep LSL_1377 ATP-dependent DNA helicasechromosome CDS1447108 2292 - 0.316754
rnhA LSL_0415 Ribonuclease HIchromosome CDS459722 660 + 0.325758
rnhB LSL_0718 Ribonuclease HIIchromosome CDS763125 768 + 0.325521
ruvA LSL_1126 Holliday junction DNA helicasechromosome CDS1154555 606 - 0.306931
ruvB LSL_1125 Holliday junction DNA helicasechromosome CDS1153506 1011 - 0.352127
sbcC LSL_1369 Exonucleasechromosome CDS1435837 3102 - 0.28401
sbcD LSL_1370 Exonucleasechromosome CDS1438935 1116 - 0.312724
srmB LSL_0349 Superfamily II DNA and RNA helicasechromosome CDS379190 2367 - 0.312632
srmB LSL_1112 ATP-dependent RNA helicasechromosome CDS1139922 1323 - 0.343915
srmB LSL_1286 ATP-dependent RNA helicasechromosome CDS1326739 1281 - 0.330211
srmB LSL_0356 ATP-dependent RNA helicasechromosome CDS389363 1479 + 0.354293
ssb LSL_0008 Single-strand DNA binding proteinchromosome CDS9548 552 + 0.382246
ssl LSL_1453 DNA/RNA helicase, DEAD/DEAH box familychromosome CDS1511924 2856 - 0.32388
ssl LSL_1013 DNA/RNA helicase, DEAD/DEAH box familychromosome CDS1029920 2961 - 0.30564
tatD LSL_0227 DNase, TatD familychromosome CDS282147 771 + 0.326848
topA LSL_0720 DNA topoisomerase Ichromosome CDS765005 2112 + 0.348011
topB LSL_1306 DNA topoisomerase IIIchromosome CDS1352826 2076 - 0.32659
ung LSL_1152 Uracil-DNA glycosylasechromosome CDS1184956 699 - 0.359084
uvrA LSL_1174 Excinuclease ABC subunit Achromosome CDS1208147 2835 - 0.336508
uvrB LSL_1175 Excinuclease ABC subunit Bchromosome CDS1211000 2001 - 0.329835
uvrC LSL_1098 Excinuclease ABC subunit Cchromosome CDS1127001 1773 - 0.318669
xerC LSL_1189 Phage integrasechromosome CDS1228181 1146 - 0.331588
xerC LSL_0917 DNA integration/recombination/inversion proteinchromosome CDS944461 918 - 0.303922
xerC LSL_0236 Phage integrasechromosome CDS289941 1146 - 0.304538
xerC LSL_1648 Phage integrasechromosome CDS1734886 1146 - 0.337696
xerC LSL_0765 Phage integrasechromosome CDS798199 948 + 0.312236
xerC LSL_0729 Phage integrasechromosome CDS777765 1122 - 0.300357
xseA LSL_0534 Exodeoxyribonuclease VII large subunitchromosome CDS577519 1341 + 0.298285
xseB LSL_0535 Exodeoxyribonuclease VII small subunitchromosome CDS578859 228 + 0.29386
xthA LSL_1490 Exodeoxyribonuclease IIIchromosome CDS1545303 828 + 0.358696