Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View as list

# Rhodospirillum rubrum ATCC 11170, ATCC 11170

>Rru_A1553 Histone-like DNA-binding protein
MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTF
AVTKRAATEGRNPRTGETIAIPASKQPKFKPGKGLKDAVNA
>Rru_A2566 hypothetical protein
MAIKNPKVFFLGELKPPPKPGTEKENVRPQKIIPVATQEMIAPLDLTGRL
FTLDALHCQKTFEIARQAGNHLLVQAKINQFPPV
>Rru_A3442 Transposase IS116/IS110/IS902
MDYYAGIDVSLELSSVCIVNQDGKIFREVKVASDPEALIGLFGGLGVTLS
RIGLEAGPLSQWLHAGLTAGGYDVVLLETRHVKAGLSAMTVKTDRKDARG
IAHLLRMGWFRPVHCKTNSAQEIRVLLVGRKLLQSKMGDLEQGIRGLLRG
FGLKVGVISKGRFAARIRELVAGQAMLETVAEPMLRARDALRAEFTLLHR
QILAIVRRDDLCRRLMTVPGVGPLVALTFKSGIDDPSRFTSSKTVGAHFG
LTPKKYQSGETDITGGITRTGDAMVRMALYEAAQVLLTRSQRFSSLKRWA
LEVAKRRGMKRAKVALARKLATVLHRMWIDGSDFRWGKEITSA
>Rru_A0002 DNA-directed DNA polymerase
MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMD
LEIVETVTATTLAPGATTAPAHTLYDIVRKLPDGSQVELSYDGNDGQLVL
KAGRSRFSLSCLPVEDFPALSAGEFSHSFSLPATDLRGLIDRTRFAISTE
ETRYYLNGIYLHATESAGVPVLRAVATDGHRLARAEIPLPAGAAGMPGVI
VPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLTSKLIDGTFPDY
ERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLSA
SSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEGGSVRLTFADAA
SPTVIRDVADASAVYVLMPMRV
>Rru_A2186 putative transposase
MASIFGAICPEQGKGAGLVLPFCNTETRALHLIEISLAIAPDAKTVVLMD
QAGWHTTDKLDVPANISIIALPAKCPELNPVENIWQFMRDN
>Rru_A3035 nuclease (SNase-like)
MKSFVALALGFAVLHAPLARAECYQWPLREHQGRVVYDGDTLYTTLPGAP
AELAAISVRIRGIDTAEIRAKCDEERYQATAARDYLEHLLSQGQPEFCEV
AWDKYGGRVDATVRVGGKDIATEMVRAGFARSYSGGARASWCG
>Rru_A1220 Phage integrase
MDRPDLPADPAPHPDEAGVVPGLFLPCASDLRPSLVAWLGWLQGERRASR
HTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAARLTQGL
SRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESE
ALDALSVASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGE
VMRITGKGRKERLVPLLPVVVEALADYLAACPFAGGPDDPLFLGSRGKRL
NPGVVQRQMRRLRGFLGLPETATPHALRHSFATHLLAQGGDLRTIQELLG
HASLSTTQRYTKVDAGTLVGLHGATHPRAR
>Rru_A2131 hypothetical protein
MVTKTQLQPRVTTMTYEMMALRTMLEKGADADVLRDMIGFAVHRLMELEV
QAHTGAALGERSPDRVAHHNELQANSEKVENFN
>Rru_A1087 Crossover junction endodeoxyribonuclease RuvC
MRLLGLDPGLRITGWGVIEVTGNRIGHVADGVVRSDDRLSLAARLAQLHG
GIVAVLKAYEPVEAAVEETFVNRNPASTLKLGQARGAVMLAPALAGLVVA
EYQPSVVKKAVVGTGGAAKDQVGMMIRTLLPGATLETADAADALAIAICH
AHYRAGALSLALARAGGGR
>Rru_A1745 Single-strand binding protein
MAGSVNKVILIGNLGKDPETRTFQNGGKVTNLRIATSETWKDRQSGERRE
RTEWHQVAVFGPLADIAERYLRKGSKVYLCGSLQTRKWQDQQGQDRYTTE
IVLQGPGAEMTMLDGKPGAGDDYQGGAGAGGGYGQGGGGYGAGAGAAAGG
GYGGGAAGGGRQGWDTAPASGPAGGPVDMDDDIPF
>Rru_A1519 hypothetical protein
MPPTNNVSEREIRPSVVFRKVTNGFRSDWGAQIHAGYRSVTGTARLKGQT
AFAAVRALVDGQFAIA
>Rru_A3738 Phage integrase
MTTAESGDTAPSSRGPSLAVQAEAFLEMMLAERGAARRTVEAYGRDLRDY
AAFLREKGLDGLTVSRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFL
VSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAGEGARGLRA
RVLLELLYSTGLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPA
RAALRDWLIARPTTLPASGAARRRADRFLFPSSAAEGHLTRDGFAKMLGE
LALRAGIDPARVSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIY
THVLDDRLTTLVRTAHPLARLKGEGNNK
>Rru_A1127 ISBm1, transposase orfB
MEAEALIENLGEGDILLADKGYDSNAIRALAAEKKAWANIPPRSNRKGSF
AFSSWVYRQCTLVERFFNRIKQFRGIATRYDKDPLNFLAAVKLVALRIWC
QP
>Rru_A1730 nuclease
MAAWRLGGRTLGLLGGVILLASLPATARADVIGEACVIDAGHLTIGGKRA
YGRCQGGTAITLAAIDAPSSAQTCTTPAGKPWDCGRWAAYVLVELSKNKK
VICQGTEKDDKGGLVALCYAGGRQINRTLVELGWALPATTDPSFAAAVAK
ARSAAVGLWQGTFDPPAEWRARHKP
>Rru_A2660 AAA ATPase, central region
MTKGLFDEAAPRPLADRLRPRQLAEVVGQDHLVGPDGPLGRMTAAHRLAS
VVLWGPPGCGKTTIARLLADSTDLHFEPLSAVFAGVADLRKIFTAARERR
TVGRGTLLFIDEIHRFNRAQQDGFLPYVEDGTVVLVGATTENPSFELNAA
LLSRCQVLVLRRLDDAALETLIARAEAECGRSLPLSAEGRETLRALADGD
GRYLLNLAEELIALPAEPLLDAAGLARVVQRRAPQYDKDREGHYNLISAL
HKALRGSDTDAALYWMGRMLAGGEDPLYLLRRLTRFAVEDIGLADPDALR
HAVAAWDTYERLGSPEGELALANLVIYLGTAPKSNAAYKAYGAAMRAAKQ
TGSLMPPLHILNAPTKMMKELGYSQGYAYDHDAPDGFSGQNYFPDGMARQ
RFYNPPERGFEREVRKRLAWWDKLRRERRAAEPGDDDQS
>Rru_A2189 TRm3 transposase
MRCSTRSWQRPLDSVYRLVFFDAIRVKIRNEGMVRNKAIHIPLGVHADGA
KDVLGL
>Rru_A3349 transcription activator, effector binding
MPALDVRPLPAMIFASLRHIGPYGEAGETFRKITDWAVSEGVMTPETQIL
GLSYDDPKTTPAEILRYDACVTLKTPVALPPGMQLMALPACSWVMMTHKG
PYETMGETFTKLYAALAEHPTLVPIATGAIEIYVNDPATTAPADLITELG
VAVLEGADGF
>Rru_A3310 ISMca6, transposase, OrfB
MSSAETTDRGRHGRQEHRWVEVFDVSGRLGPTWDGLIAAVARVTRLTWHK
DTKSGLWHKTQETALYACQINLPAAVAGTAIRQHWGVEKRSHYVRDVTFF
EDQSRIRTKPGHFARLRSFALNILRANGTNNISRELFINALNPNHALGHR
VT
>Rru_A3146 hypothetical protein
MIRTLLVAAIALSVAGCSTYQREKADLTMGGGQSYRQQQAQERLDEARAK
NTSMREEEEMARTELADVQAKLKEVQRDAAAQQKTLLAARKSSKITAARH
DQLSRKLDDTTSDYYATALELQSAEAAGSTATSAKKKRELAELEKELKKI
DAEISILAK
>Rru_A3471 RecR protein
MSAGEIDRLIGLLARLPGLGPRSARRAALHLLKRRESLMDPLMEALGAVA
ASVRLCPVCGTLDTRAPCSICADPRRDGTLICVVRDVADLWALERGGVFS
GRYHVLGGLLSAIDGVGPEDLGLDRLAARVAEGPVVEVILALPATVEGQT
TAHVIADLIEPKGITVSGLAQGVPVGGELDYLDDGTLTAALRARRPV
>Rru_A2718 DEAD/DEAH box helicase
MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTG
KTASFTLPMIDILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK
LSMALLIGGESMNEQQKVLDRGVDVLIATPGRLIDLFERGSILLRDVKVL
VIDEADRMLDMGFIPDVERIVALLPKIRQTLFFSATMDKEIRRLADAFLM
NPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRETVTNAFIFCN
RKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSD
VAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPED
AKYLRAIENLLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRP
ERGARRSGRGSADAERPRPLAPERAANDQAPVERPAVEKTLAEQPVAERP
PVERGQAERTAERPSSDRTNERASSDRSSERASSERNGDDRGRGGRGRDD
RSAARGRRPRRWEDDPQSEVMEMRIGDDVIGFGGFTPAFLLVPSVPFSDP
DELDREALAEEALADAGLLVEAEEPENDSDFVPAPGLAAREIETAPKAPV
AAEKPEREKAEREKPKRKRGGRRTKGATDGADTAPTAETLAATTEGTDAL
AATSEGTDALAATTEGTDAVAEPLSDDAAPMVAEAPGAEPVVEAPTVAEA
APEKPKRKRAAPRKKAEAAETVTNEAAASPEAEAPAEKPKRKRAAPRKKA
EAVGAEGDETVAVVAEKPKRKRAAPRKKAEAAQADAEAEVAAPTEPRED
>Rru_A0169 Protein of unknown function DUF48
MADPAFVPLRPIAIKDRSSIVFLQRGQLDVVDGAFVLIDQEGVRVQIPVG
GLACLMLEPGTRITHAAIVLCARVGCLVIWVGERGTRLYAAGQPGGARAD
RLLFQARNALDETARLNVVREMYRRRFDDDPPARRSVDQLRGMEGVRVRE
IYRLLAKKYAVDWNARRYDHNDWDGADIPNRCLSAATACLYGLCEAAILA
AGYAPAIGFLHRGKPQSFVYDVADLYKVETVVPTAFSIAAKIAAGKGDDS
PPERQVRIACRDQFRKSGLLEKIIPDIEEILRAGGLEPPLDAPEAVDPVI
PPEEPSGDDGHRG
>Rru_A2163 conserved hypothetical protein RP631
MSAGVQLPLDLPWRPALGREHFLVAACNASAVALVEAWPHWPAPAACIHG
PTGAGKTHLAQVFATRAAAVVLDPAVILGTDPLTLFEGGRAAVIEDADRA
GLPEATLFHLLNAARQRGGSLLLTALSPPARWGVHLADLRSRLAALPAEG
LCEPDDELMAAVLLKLFSDRGLDVAPGAIGYLLPRMERSFAAARDLVVHA
DALALREGRAVTVPLLRQLLATPDRADR
>Rru_A3202 DNA topoisomerase
MHVVVVESPAKAKTINKYLGKDYVVLASYGHIRDLPPKDGSVRPDEGFAM
DWEIDAKSEKHVKDITQALKSADGLLLATDPDREGEAISWHVRDVLEKRK
ALVGKQVQRITFNAITRSAVEEALRNPRDLDTPLVEAYLARRALDYLVGF
TLSPVLWRKLPGSRSAGRVQSVALRLICEREQEVERFVSREYWTVDAILA
SPQGQIFRARLSQLDGQKLDKFGLPDETTALAALERIKAATLRVESVERK
QARRNPAAPFTTSTIQQEASRKLYFSARQTMQVAQKLYEGVDLGGETVGL
ITYMRTDGVSIAPEAVFATRDLIGAEFGAAYLPEQPRVYKTKAKNAQEAH
EAIRPTDVARTPQSVAPYLTAEQRKLYELVWKRTVASQMASAILDQVAVD
IADPEAKVVLHATGSVIQFDGFLKVYREDFDDRPESSPDGAGEDENRLLP
PLREGDGVKREDVKADQHFTQPPPRYTEASLVKRMEELGIGRPSTYASIL
SVLQDREYVRLDARRFIPEDRGRLVTAFLENFFSRYVQYSFTADLENQLD
EISDGKLGWKTVLERFWMDFKAAIEGTATLRVSEVLDALDKELGPHLFPQ
AEDGHDPRVCPVCSAGRLGLRIGKFGAFVGCSNYPDCKFTRPLVTKEGEG
GDGAALAEDGTKPLGKDPVSGEDVTLRKGPYGLYVQKGEAAPVEKGKKAV
KPPRVSIPKDMDAATIDLDIALKLLSLPRPVGDHPETGTMISAGIGRFGP
YIKHGDIYKSLPKDDDVLTIGLNRAVSLLAEAGKGGRARQPARSLGDHPA
DTKPVTIHDGRFGPYVQHGGVRATIPRTADPATYTLAEAVELIAAKAAKD
GDGKKAPAKKAATKAPVKKAAAEKKAPAKTATKKAAPKKAADSAEDAPAK
APRKSKAKPASADPD
>Rru_A1962 hypothetical protein
MIEPLLPNKPRGGPRIDDRRVLNGILWRFRTGSPWAEIPERYGPPTTCYL
ADKGYDSNAIRALAAEKQFRGIATRYDKDPLNVLAAIKLVAPRIWCQP
>Rru_A3434 UvrD/REP helicase
MTRPPSEPAPLLAEADPLDPAKPQRRAADPLASAWVAASAGTGKTKVLTD
RVLRLLLAGTPPQRLLCLTFTKAAAAEMANRVSAVLAGWATLPEEALRGR
LASLLGSLPEGEEAIEALSGRARRLFAQVLDCPGGLRIQTIHGFCQTLLR
RFPLEAGVAPHFEVLDDREAQALHQSARDAVLRAARQAEDGEGGDPALAA
ALAVVTGHLSESRFDEVMAALGGQRGRLLAALDHFGGAEALGKAIRDSLG
LAADDTPETVLADGCAEGAFDGPSLRAAAAALIAGGKTDQERGLRIAAFV
SETDPAIREGLFWTYIGAFLTKTDEKPVKTLCTKPVEKAHPGTLESLEAE
QQRIWTLRERLRAATTAQASEALLTLVGAMLKDYQRRKRALGRMDYEDLI
LAARRLLAGDGAAAWVLFKLDGGLDHLLVDEAQDTSPDQWAIASALAGEF
FTDSARWDGTRPRTVFAVGDRKQSIYGFQGADPKAFEDMRRHFHDAVSDI
GGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDDADSGVAEDIT
HHAFRKDAGGLVELWPAMEPAPRVVGDPWKPPVERIGLESARARLAKRVA
QRIKTMTSGGELLESQGRPIRPGDILVLVRRRGGFEEELVSALKSAKVEV
AGVDRMTLTDQLAVMDLIALGKALLLPEDDLTLASVLKGPLIGLDEDALF
TLARDRGRDERLWDRLRPHAGAENAYGKAMEIIEPLRDRAGRLAPHEFYA
HVLDGPLNGRRLLLGRLGPEAEDPIDEFLALTLAHERVGPPALQGFLSWL
EKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPVVFLPDTLAKPTGNDLL
LWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREYRRLLYVAMT
RAADRLYICGWETLKRPAEDCWYALIHDALAASAQTVEVPLLDATGALKD
TEVLRLTCPQEGSPSPSDSAAPADEEGEAPAAWAALPPPLEPTPSRPLAP
SHVGDEGAARSPLDGRGDPRRFLRGRLIHKLLQLLPELPDEDRGPAARRW
LSRPAWALEAEEIGALSAEVLAVLDDPAFRAVFAPGSRAEVPLVGLVGNH
VVSGQVDRLAVTDDEVLIVDYKTNRPPPRAVDLVDIAYIRQMAAYRALLA
QVFPSRVARCVLLWTDGPFAMEIPAERLAEEARKLGW
>Rru_A2365 ATP-dependent helicase HrpB
MDPSRLLRTERERKAVMPPFSPGPLPIDPVLPALLEALASHGRAVLIAPP
GAGKTTRVPPALLGALWLGGQKVVMLEPRRLATRAAARRMAFEAGEAVGQ
RFGFRVRGESRSGPLTRVEVMTEGILTRRIQDDPELAGVGCVILDEFHER
GLQGDLAFALLREIQGALRPDLRLLVMSATLDGAAIAALMDDAPVIESHG
RAFPVTITHGERPAARDLGPAMARTILRALEDEPGSVLAFLPGEREIAAV
AGALARALPADTVLRPLYGALPPAEQDAAISPCPPGQRKVVLATDIAETS
LTIEGVRIVVDSGLRRSPRFDPQTGLSRLDTVRISQAGAEQRRGRAGRLE
PGVCLRLWPEAEHRALPAQETPEILAADLAPLALELARWGARDAAALCWP
TPPPPGPLAQARDLLTSLGALEPAGGLSAHGAAMAALPLHPRLAHMVLAA
KADGADDGALACLLAALLAERDILRPGPGAARDRDLTTRLEILIGQGRRA
PAGQILRQPTLGAVRDEAARLRQLAGIAASASPEPARCGRVLARAYPDRI
AQARPGQPGRFLLSSGRGALIDVGDPLAAAAFLAVAEVDGAGSEARVFLA
APLDRADLEELFDEALRPCETVTWDPRAEAVVARVERRLGALVFESRDLP
DRADPARTTPAVCAGIRRLGLGCLPWTRETDRLRARVAFLHRVHSADDWP
DLSDDALLASLADWLGPWLDGITRRSAFARIDLMAALKALIGWRRLADLD
RLAPAQMDVPSGVKVALDYEVPDGPVLAARVQQLFGLTRTPAVLDGGHPV
LVHLLSPAGRPLQVTRDLAGFWKGSYAEVRKDMRGRYPKHPWPEDPTGAE
ATNRVKPRGQ
>Rru_A1128 Integrase, catalytic region
MSRPVYASPSFSLLFNRLGQQAPRALAQDLGQRIVKLIRLTQARHGAIFL
YGVSLLLGGAGRLVTRLDTPPSSDRHHPVSPIAPYEIGYVHIDSCELCHA
DGKLVMFLAIDRVSKFTYVDFHDCAGKMEGAAFLRNVVEAFPYQIHIVLT
DNGMAFADLPKNRNGPSRRFFGPHIFDRVCIEHGIEHRLTKPYHPWTNGQ
AERMNRTIKDATIKAYHYDDLESLKAHVLAFVTAYNFAKHLKALRWRTPY
QAICDARTKDPSIFKIDPHHLTQGPHTLSS
>Rru_A3757 Excisionase/Xis, DNA-binding
MLSKPLLTVHEAAQLLKVKEATIRQWIRDQQMRAIKFGREWRIAEADLER
FVNDHANR
>Rru_A2488 Putative RNA methylase
MTPCGTASTSPEKSAAILAGPPSPGVEGTRSDLARARVVARAWAETLTPA
RRADQALLFTTAAMAALRKGIGVEAVARPGFARPRGRLDHAGARVAQAIG
EDAALLPLAEALHLITGLYPALLPARERGALGAFYTPIALVERLLDRATE
EGADWAGLRLLDPAAGGGAFLLGAVARIRAALAGCEPAFILGRIGARVLG
LEVDARAAALAQAALDILLADLAQAAGRPPPVVLRVADTLEIPADPSFDL
VVGNPPYGRVGLTPAQRARFGRGLYGHANLYGVFTDIALRWTAPGGLIAY
LTPTSFLAGRYYGALRGLLAAEAPPLSIDFVHARQGVFEDVLQETLLALY
RRGGQAGRVRIHYLTLDGEGRARIAHNGTIGLPADAGAPWLAPRDPGQGH
LVARVEAMGHRLAEWGYGVSTGPLVWNRYKGQLRDRPTGKRVHPLIWAEA
VTADGRFVFRAAKRNHAPYFKLQAGDDALLVGEPCVLVQRTTAKEQHRRL
IAAELPAAFVAGHGGVVVENHLNMVRAKGTPRVAPAVVAALLNSAVVDQV
FRCMSGSVAVSAFELEALPLPAAGDLGPLTALVAAGAPRDDIEAECARLY
GKGL
>Rru_A3629 DNA polymerase III, delta subunit
MKLTGQAIDGFLRKPDPKIRCVLVYGPDEGLVRERLEQLARTVVADPKDP
FRITDLSGDDLRADPARLADEAAALAFGGGRRLVRLRQMTDQHAPRLKAF
VEAPVGEALVLVQGGDLTARSALRKLFEGASAAAALPCYADEGRSLETLV
RATLAEARLAAAPEVIDYLVANLGGDRGVSRSELAKLVTYCGKATSVSLD
DALACVGDSAQIGLDMLTNAVAEGDSATALRALDRLGQEGMATVALLRGL
TRHFTRLHLVAGLIAGGTSVDQALAALKPPVMFKLAPRFRSQVQRWSAER
LAQALDLLLDAEIDAKSSGLPERALVERLLLRLARGAKTASR
>Rru_A1610 conserved hypothetical protein
MAKSPAAGQGRGVGDIDPIRLAHLNAGGGATTTLTESLAVDFAAVMRATL
PDLGEAAAVLDGAATLGITKRMALAAGLILERLGPGAVERLAESPSDTLR
GWACFVIGQGAYDSLAQRLRAIRPFADDGHFGVREWSWLALRPHIAADPQ
AAIAALVPWTAEPSDNVRRFACEATRPRGVWCAHIAALKKAPEQGLPILE
PLRADAARYVQDSVGNWLNDAGKDQPAWLRALCDRWRAESPEASTLRICA
RASRSLDQTA
>Rru_A2883 DNA primase
MALPNAFLDELRARLTLSSVVGRRVKLARKGREFLGLCPFHNEKSPSFTV
NDEKGFFHCFGCGAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRETA
EDRDRSRQAASHREIMEMACAFYQKALRLPEGRGAMEYLRGRGLDDATLA
RFRLGFSPQGGALKAALAREGVDEQAMVDLGLILRSDDGRPAFDYFRGRV
MFPIGDPAGRVVAFGARILGEGQPKYLNSPDTPLFHKGHSLYNLGPAREA
ARQSGAIIVAEGYMDVIALARAGLGWAVAPLGTALTEAQMEALWRTIPEP
VLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPDDLLREGG
PVALRQVLDVAVPFSEMAWRELSEGQALTTPEQRAALEAAIDAFVAKIAD
RSLQGHYRQALRDRFWTVLRGDSARSRAERARKDPRKERKDGGRWRPGDR
PPAPGLPVAAPADPARLRERLLLAAVLNHPEVFDHVGERLGAMILGEGAL
DSLRQDVVMILGGGKSLDMNGLWSQLSARGYAADVAALTRPELLIHGKFA
RPGADPGLVKAGWDHTYDLHQRGALQADCQRANERLGEHMTQEALEHFLA
FKQQDKWADEPVLDGPVPEG
>Rru_A3435 conserved hypothetical protein
MRPDAVQTIPAGLPFLDTLAAGIVDRLGDRTADPLAATRVTVLLPTRRAC
RALREAFLRIEGGKAALLPRILPLGDLEEDESAGAGLADGALRPTLDFAP
PIAPLERQVLLARLILARDSAKATAGGDSAMTPAQALRLAQDLAGLLDLA
QTEHIDLSTVAALVPQTSPLAEHWQLTLDFLALLTSVWPGLLAAHHALDP
ADHRNKVLDAQAAAWAAHPPAGPVIAAGSTGSVPATAALLATIAHLPQGL
VVLPGLDIGLDDESWEALEDSHPQAGMKRLLDTLGLSRQAVRFFSETPPR
GAIAAPPARALLVREALRPAATTDRWRRLRESGPSGGEAFARALDGVTLV
RAAGPREEAAAIAVMMRGALETPGRTAALITPDRALARRVAAALGRWGLR
VDDSAGRPLSQTPVGAFLRLAAQAVADGLGPVALLSLLQHPLAAGGEDPV
VFRARLRLLDREVLRGPRPDPGVAGLAQAIKAADDPDMERHLGGWLERLE
ALAGPFCTLMDSDEPVDVAALIDAHMRFCEGLAEAREGGVEKPGATRLWA
GDDGEAAALLGADLTEAAPSLGAIAPRHYPALLDALMDGRAVRPKRDLHS
RLFLWGPLEARLQRADLLILGGLNEGGWPAAVDTGPWMSRPMLDQIGLPQ
PERRIGLAAHDVSQALCAPEVAITRALRVEGTPTVPSRWLTRLDAVIGAT
GLDKEWAKARQRGDRLLALARSLEQPQGERKPCPAPEPRPPLADRPRRLS
VTRIETWMRDPYALYAQFILGLSELDPLEADPGVSDYGTLVHGALEDFVG
LYPKDLPGDPEAEIIRLGTLRFAPHMTRPGVRAFWWPRFLRIAHWIAERE
IERRPEILEVFAERRAEMTLTGPAGPFILTAKADRIDLRRDGTLAVIDYK
TGMLPSKKEVESGLSPQLPLEALLASRGCFPGIAGKPVSDLGFWKLRGDR
LGGEIRQAADDPEGVAEAAHKGLSDLITAFDNPDTPYFARPHPDHAPRFN
PYQHLARVKEWAEKGDAE
>Rru_A0003 RecF protein
MVERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRG
LRRAALADPCRRVGGDAATAGPPWAVAAHLRLPAGPGTLGRGVDVGTGLE
RATAGERRLVRIDGATAGQAALGDLFSVLWLTPEMDGLFRGGASERRRFL
DRLVNGLDPDHAGRTAAYAQAQRERARLLREGRASRGWLDGLEDVMARHG
VAIVAARRDLVDRLGAAVRAATGPFPGARIDLVSEVDGWLAAGPALAAED
RLRAALAMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKAVLIAL
ILAQARVQEAARAVAPLLLLDEGVAHLDAPRRAALGEALSGQGLQAWVSG
TEAQAFDSWAKNAQFLRIAEGAVLD
>Rru_A3473 DNA-directed DNA polymerase
MRPVDPAPGMSDQVTPDSEAPSSEKPAGSKATPASAPYRVLARKYRPASF
DALIGQEALVRTLTNAIDSGRLAQAWMLTGVRGVGKTTTARLIARALNCV
GADGKGGVTITPCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREILDG
VRYRPAVARTKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIR
KVPVTVLSRCQRFDLRRVSAAELSGHFLRIAGLEGAEIAPSALTLIARAA
DGSVRDGLSLLDQAIAHGGGTVSEAQVAEMLGLADRARIFDLLDALLAGR
IAESLDLLDRQYALGADPLVIVQDLLDLVHWMTRVKVVPVSAEDAAVPEA
ERTRGRAMAERLSMAVLNRCWQILLKGLGEARGAPVPLQAVEMVLIRLAY
ASDLPTPEEALKMIAGGAQPAAPRPPAPHSPAGPPPAAPPPPSPPSRADE
PPRPSRPSQSNAGGGALAVAPVEVAPDPPPPPPPPPAPPAADPAGAFDPV
PRSFALLVDLFRRKREAVVTGHLYRDVELVGYDPEAGLLEIHPLPAAPAK
LAGQITRLLGEWTGRRWMVTLTDRPGQPTLHDATQADIHAHPLVKAVLDR
FPGAVIGTIREHPGAVAAEADSPDLLGDPGEAYGAPGFDTPAGADPDDLF
DPFIGDDET
>Rru_A1089 Holliday junction DNA helicase RuvB
MAGHEEEDERLISGRRREGEVDAALRPQSLADFVGQRQTRENLGVFVQAA
RARGEAMDHVLFHGPPGLGKTTLAQIVARELGVGFRGTSGPMIVKAGDLA
AILTNLEPRDVLFIDEIHRLNPAIEEVLYPAMEDFQLDLIIGEGPAARSV
RIDLPPFTLVGATTRSGLLTTPLRDRFGIPLRLDFYETDELVQIVTRGSR
LLGMALTDEGAREVARRSRGTPRVAGRLLRRVRDFAAVAGRSPVDAFIAD
AALNRLEVDGRGLDAMDRRYLSRMADHYGGGPVGVDTLAAALAEERDTVE
DVIEPYLIQQGFIKRTPRGRMLTAIAWTHLGLTPPAETPPVQPDLWSDAP
>Rru_A1849 Recombination protein O, RecO
MIEWSDRGIVLAARPHGEDGVIVSLLSAGHGRHSGIVRGGRGKRLRAALQ
PGSLVQATWKARLEDHLGSLVVELLAGVAGGLLDDRDRLAALAAACALAE
TVLPERAPQADVYDATLALLDALAEGGEGTPLVWAGAFVRWEIGLLAALG
FGLDLSCCAVSGECGDLAYVSPRSGRAVGREAGAPWQARLLALPAFLLSP
AEVPANAQAVGDGLRLSGYFLEGHVLAPQGRGLPASRQRFVERLRRWSAA
DR
>Rru_A0674 Phage integrase
MSVPPEASTPSPESAPAPIPPPAVPQPIQQSQPILPPQRIATVQEVFDRY
LSKFDRRPRTEQAWRRHMEMFLELSGLTWVAHIHTVNDAHVEDFILALRK
LPARRQGANFRTLTLAQMIDKFGASADVPKLDQRSINVKIDALRAVFYYA
QRHKYRLDNPFVGKVSKRATKRVKPKPRLPFDADELASIFGNEMFQMPPH
QWEGKHWLTVIALYAGARMEEIGQLRVIDYRMRDGITYFAITAMESDDRD
DSPKKSLKTVGSEREIPVHPVLIQLGLTRHVQRMKAIGESRMFPDIRANG
EEITTAYSKWFGRFLTKLGITSPQKVFHSFRHTFKDACRNCGVPREVAEV
LMGHAGRTVGDSYGTGYSLAVLAFEVRKISFGTRFE
>Rru_A1700 TatD-related deoxyribonuclease
MIVDSHCHLDFPDFAPDIDAVVERARTAGVGTMLTICTHVSRFPGVLAMA
ERFPDVWCTVGIHPHEAANEAEVDAETLVRLTENPRVVGLGETGLDYFYD
NSPREAQRRSFRAHLAAGRLSGLPVVIHTRDADADTAAILREEREKGPFK
ALLHCFSSGKDLADLAVEMGLYVSMSGILTFPKAEDVRTAIADVPLDRLL
VETDAPFLAPTPKRGKRNEPALVVHTAAKLAEVKGVAVEALWAATTDNFF
TLFDKCARPTGSAPQTDGTV
>Rru_A3036 Helicase c2
MSLPPPPLPPAPPARPLPAPPPVPALVTGARGGVMLSPDGEIETLVPGAA
AAERLRLACPMVCHLPAAAQRLQATWFPGYDLLDLHAFVRPARFCAPTPR
GLARALGLPLPTSPEDEARTLVHAAMVLLDDLSRLPDKAKREAHAIALVM
ARGGWPWGRGVLALLDPGDGGGAAGAPRALAVWKDLPEVSEHAPEPPPGN
IPVEPAEARAKLAALLGQGAEARPQQADYASALCVAFQPRATPDWPTLVL
AEAGTGVGKTLGYIAPASLWAERNEGTVWISTYTRNLQRQLDGELDRLYP
DPAEKMRKVVIRKGRENYLCLLNYEEAVGRLGATPQEAVALGLMARWIKA
TRDGDMVGGDFPGWMVDILGRERSLALADRRGECVFSSCDHYDRCFIERA
VRRARRARLVVANHALVLIQAALGGIDDDSRPTRYILDEGHHVFDAADSA
FSAHLSGFEGAELRRWLLGAEEGHRSRARGLRRRVDGLYDQAGPLAADLE
EALDGARALPGPGWAQRLAGGTGRGAIERFLATARTQVLARAPASESAHG
LETDLRPPLPELLDDARAVVAALTDLVVPLKAFVRALVKRLDEEADELDT
PTRARIESVARSIERRALGPAQVWRDMAASIAEDPPADFVDWLELERSEG
REVDIGMHRHWIDPTRPFAATLAARAHGLVVTSATLRDGSGDGEADWLSA
EARAGAPHLGTPAIRASVPSPFDYPATTRVLVITDVKRDDLDQVSAAYRE
LFRAAGGGGLGLFTAIGRLRAVHARIAPALDALGLPLLAQHVDAMDISTL
IEIFRAEEDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRPDILHKARR
KAMGGSLYDDRIARLRLKQAFGRLVRRAGDRGVFVMLDSRLPSRLGGAFP
EGVVIERVGLASAVAIVAQSVGSPRGR
>Rru_A3644 Uracil-DNA glycosylase superfamily
MTPPDAEAEAALAAVVARAEACTLCAAHLPLGPRPVFRVSVTARLLIVGQ
APGTRVHATGIPWNDASGDRLRAWMGVDRETFYDARRIAVVPTGLCYPGR
LAKGGDAPPRPDCAPLWQPAFRAVLPGIALTLLVGGYAQGFYLGRRDSMT
ERVHRFDQGDPAFFPLPHPSWRNTAWINRHPWFEAEVLPALRERVAALL
>Rru_A3194 SMF protein
MAPAARPLTASEKLDRLRLLRTENVGPITWRRLMARYGSAASALDALPDL
ARRGGGAKPLRICPLAAAKREMDTLAGLDATMVFLDEADYPPALAAIEDA
PPMFCLRGALGLLGKPMVAIVGARNASANGQRLAERLAADLGRSGLVVVS
GMARGVDSAAHVGALESGTLAVVAGGVDVVYPPENDGLYRRLITEGAVIS
ETAPGEQPQARHFPRRNRIVSGLSLGVIVVEGAPRSGSLITARLAADQGR
EVMAVPGSPLDSRAQGPNGLIKNGAALIEDAADVLRILSPLIARPMAEDK
PQNYASAPPSPIADSTIDAARPRVIEALGMSPVGVDEVIRLCTLPPAVVA
VVLLELELAGRLDRLVGNRVCLIA
>Rru_A2617 Exonuclease VII, small subunit
MRGAVAPRPACRYNPAPLQQPKAVMSDDIKHGVSRGPSGSGADENGIDIA
SLSFEQALTELESIVRKLEQGTIELDQAVGAYERGVALKRHCEAKLAEAR
MKVERISLGPDGSVGTAPFDAT
>Rru_A2819 RecA DNA recombination protein
MSQSVLRLVDKDTMDKQKALEAAVGQIERAFGKGSIMKLGQRGSVVDIES
ISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLALHVVAEAQKKGGQ
CAFVDAEHAFDPLYARKLGVSLDDLLVSQPDTGEQALEIADTLVRSGAID
VLVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLTGTVSRSNTLI
IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDKEEVVG
NQTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGA
WFSYNSTRIGQGRENAKQFLRDNPAMAEEIENAVRANAGLIAEEMIGGPG
GEDDDAGGAAGVGDEA
>Rru_A3357 Transcriptional Regulator, AraC family
MTQHDPNPPSDPSLCHRAVAARDKRFDGRFFTCVRTTGIFCRPICPARTP
AMENCLFVATAAQALAAGFRPCLRCRPEAAPGLGGWLGTAASVNRALALI
GEGALDEGSVAALAERLGLGERHLRRLFLHHLGISPGAVAQAQRLLFAKT
LISDTALPMTEIALAAGYGSLRRFNHALRTAYGCPPTALRRAKGAAIVGE
GGPVLRLAARQPFDWPGLLAFFRQRAVPGLERVEGDTYVRAIAIGAARGV
VTIRGSAEGLVVTPSLDRPEGLAALVARLRRVFDLDADIGAIGAHLGADP
LLAPLVAARPGLRVPGAWDGFELAVRAILGQQVSVAAATTLAGRLVGAFG
EPLTNAPPAGPSRLFPTAARLAEADLGGLGLTTARAKAISGLARAVVETP
GLLDPGPDLDSAVARLCRLPGIGPWTAQYIALRALGEADALPVGDIGVLR
ALAEDGVRPTPAALLARAEDWRPWRSYAVLHLWSMP
>Rru_A0393 NUDIX hydrolase
MVDDDDDGCRQADRRVPLGLPILLVTAAALIDPDGRVLLAQRPPGKSLAG
LWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFH
LLMPLYACRSWRGRATAREGQTLAWVRAERLREYPMPPADLPLIPILQDW
L
>Rru_A0241 DNA methylase N-4/N-6
MAKEIGVETLTHKDAKRVNIPTAELQSVMQEEVKSPIRVAYDRRNRDLDP
QLVWRGKDERDWSELIVQAPPLYIQEKIHPKVLIDDLKRESRARAKEMVG
ATVDLFADFNGLPDKEAATEFYQHHANWTNRMILGDSLSVMASLAEREGL
RGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNKDHITREPEQVRAFRD
TWRDGIHTYLSYLRDRLTVARDLLTDSGSIFVQIGDENVHRVRMLMDEVF
GDENFISQISTKTSGGSTGEYISNVVDFILWYSKSRSYIKFRKLNKSKEI
GEAGSEKYTRIRFDNLHSRALTPEERLSTSSVPCDGRVYRQDNMTSQSVG
RDKGEGAASWFPVIISGSEIKPSLRVRWKTNQTGMDRLLKAERLELTGNS
ISYVRFIDDFSGIPLSNSWDDIGGIQSRLDPKVYVVQTPTTVIQRCILMA
SDPGDLVLDPTCGSGSTAFVAEQWGRRWITIDTSRVSLALARARIMGARY
PYYLLADSRDGQVKEGQVTRTLPKDTPTHGDIRQGFVYERVPHVMLSNIA
SNSEIDVIWDKAQETLEPLRTQLNAALDKTWHDWEIPREADKGWSAAAKA
LHAQWWDARIRRQKEIDASIAAKAEFEYLYDKPYEDKAKVRVAGPFTVES
LSPHRVLAVDQNDELVDLLQAAEGKGASKSLDASDFAQMVLDNLKSAGVQ
QAHKEDRIAFTALTGWPGKFICAKGVFREGDKDRSAGIVIGPEFGTVSRL
DLVTAAREAGDAGFDVLIACAFNFDAHSAEFDKLGAIRILKARMNPDLHM
GGDLKSTGAGNLFVVFGEPDIDIIITADDKVRVKIKGVDIFHPSTGEIES
GGPDTIAVWFIDTDYNEESFFVRHAYFLGADDPYKALKTTLKAEIDREAW
DSLNRDISRPFDKPKSGRIAVKVINHLGDEVMKVFSVDV
>Rru_A1153 Protein of unknown function DUF196
MVWWDDPDDAFCEDPFDPEGDYGALQVGKQPMNRYVICYDIVDDKRRLKV
AKCLDSYGSRVQFSVFEVLVSKPLMTRMVRELGALINAKTDRISIYPQCA
TCDARRTDLGATVEKPVHEPWIIV
>Rru_A0451 conserved hypothetical protein
MLDFGYAVLRAVVGRCLHGAGLHRSLGLHHDNAENDGNLADDLLEPFRPA
VDRLVLRIVAEAAPMDQQARRRLAEVADWPVAMGGEWVRLRTAVARVALS
LRTVVEGGPARLEG
>Rru_A2220 Excinuclease ABC, C subunit
MTDLPVDEPDRDDGADQPDAGADPATPRGVEAIRAALRTMPSSPGVYRMI
DGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEVLTTHTE
AEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLR
KGGEYFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKR
CAAPCVDRVAEADYKALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYE
QAAIFRDRIKALTNVQSHQDINLPTLGEADVIACHQAGGQTCVQVFFFRG
GRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGFPPPREILLLTDIPHHD
LVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREALGRRLAESSAQR
TLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAYR
KFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGG
LGQLNAVREALAEIGVEDVPLVGVAKGPDRDAGRERFFVPGRPPFMLRHN
DPVLYFIQRLRDEAHRFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALL
HHFGSAKAVSQAGLTDLEAVEGISAALAKKLYDHFHSEG
>Rru_A3054 Ribonuclease H
MSAAAGDEIKRVRVDMFTDGACSGNPGPGGWGTILRWGDTEKELWGGETP
TTNNRMELMAVIRGLEALRRPVTVTIHTDSRYVHDGITGWIHGWKRNGWK
TAAKKPVKNEDLWRRLDAALGTHDISWQWVRGHSGHVENERADELARRGT
SEARQGKVDGQSSTIL
>Rru_A1280 HPr kinase
MNEMPVQPTPAPPVDAPSPDGDRDLFGWRVRADLPLPELPVWAGDGRAPD
ILIRVAAVSPLDDGAQVFSPRIRFIEATLCFDVPDVARYRVDGGHLVTIE
AARGIAADAPEIRLFFFGTVLAVLCFRRGLIPLHASAVALDGRALLLSGE
SGTGKSTLAAALLARGYPLLSDDLCALDVSCPDKPMILPCTAHLKLWGDA
AARLGIATDGMTPVRRHLDKFRIPVRSASDAPLGPGTIIRLKRVTRAEQV
GTRPLLGAEALCYDLIHRFRLGIALGYQSTMLTALAPLVRSAPIIQLNRR
DDLGALPDLADHVIRLARDERRD
>Rru_A1271 Metallophosphoesterase
MRILHAADIHLDSPLSGLIARAGGQVGDLTTATRRAFTAMIDYALEAGVD
LVLIAGDLYDGDWRDFSTGLFFLSQMARLERQGIRVAVVQGNHDAENRMT
RSLRWPPTVKVFRSDRAETWIPEGLEVAIHGRSFPRRDVTEDLSAGYPPP
VAGLFNIGLLHTAADGRLGHTPYAPCDVPTLVGKGYDYWALGHVHGRAIL
HERPWVVFPGNLQARHVNEPGAKGATLLTIDGGEVTALEALAFDVLRWVR
LEVDLGGCASPQQAYGRIETALAEALTQAEGRALAVRLTLSGATAVHDLL
AGDPERTTAECLALTERAGGEVWLEKVAVATTPPRQDGAPAADELFAVIA
RILETPEERAVLRADLEQALTRVPPTIRQAAGLTPLDEQALAGLLAAAEA
TLRRRLLDSPE
>Rru_A0676 Transposase IS116/IS110/IS902
MDYYAGIDVSLELSSVCIVNQDGKIFREVKVASDPEALIGLFGGLGVALS
RIGLEAGPLSQWLHAGLTAGGYDVVLLETRHVKAGLSAMTVKTDRKDARG
IAHLLRMGWFRPVHCKTNSAQEIRVLLVGRKLLQSKMGDLEQGIRGLLRG
FGLKVGVISKGRFAARIRELVAGQAMLETVAEPMLRARDALRAEFTLLHR
QILAIVRKDDLCRRLMTVPGVGPLVALTFKSGIDDPSRFTSSKTVGAHFG
LTPKKYQSGETDITGGITRTGDAMVRMALYEAAQVLLTRSQRFSSLKRWA
LEVAKRRGMKRAKVALARKLATVLHRMWIDGSDFRWGKEITSA
>Rru_A1848 Gram negative topoisomerase IV, subunit A
MSKGPVPEPLEIRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHR
RLLYAMRMLKLDPGSGFKKCARVVGDVIGKYHPHGDAAVYEAMVRLAQEF
AVRYPLVEGQGNFGNIDGDNAAAMRYTEARLTAVASALMEGLDDDAVDFR
PTYDGEDHEPVVMPAAFPNLLANGSSGIAVGMATNIPPHNVGELCEALLH
LIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRTGRGAMRLRAR
WEKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADVRDES
ADDLRLVLEPRNRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVL
GLKEALVAFLDHRLVVLGRRSRHRLGKIEHRLEVLAGTLIAYLNLDEVIR
IIREEDEPKPALMAAFGLSDVQTEAILNMRLRSLRRLEEMEIRREHDALS
AEKAGLEALLADEGLCWKVIAKQIRETRKTFGGDTALGRRRTELGSAPTA
VIVPIEALVEREPITVLLSERGWLRAVKGHQEPGEENKFKEGDALLLALH
AQTTDKLLILDSTGRFFTLPADKLARGRGFGEPVRLMLDLPNDADIVSLL
VHDPARRLILAASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREV
RGDHVAVIGQNRKLLVFPLTQVPVLARGKGVILQRYKDGGIADIKTFAIA
DGLTWKSGERTRTESDLTAWLGDRAGLGRLPPQGFPRTNSFGP
>Rru_A0872 hypothetical protein
MSRLVAFSTIAFLLLGGDLVEGQESQVKTTPSPTPGPAPALGGGGAFPVE
NGLIVLRANRLSKRGEAASPPPLGPLDPPPTRNASLSRRRAGDGLERASP
TLSLAQPDQVIIRTIDPTGPLLPGGRGALQLWWEDSDPASENRARAAYGL
SRGKVGAKDPDEGEETFFLDDWGLGRPATRVTISKTRSGRPCVTLGVPHP
MDKACGRP
>Rru_A0347 Protein of unknown function DUF48
MLSGRLGLEKARIPHADRHGLVWLDRGRLEVEDGCLRFVTAGGGELAAGD
YQIPHQAVSIILLGPGSSVTHDALRLLARHGCALAAIGQGAVRFYTAPPL
MPDSSALARAQVTLWADPKTRMEVARAMYAMRFGEIVRTRDIEVLRGQEG
ARIKRSYQLAAERYGIPWRGRSYDRADPEAGDEANQAINHAATAMTAAAS
VAVAAVGAIPQLGFVHEDSGQSFVLDIADLYRHDITLDIAFGAVKEAEKS
GDPLERLTRQRAAKLFRQRGVIPSMIDRIKTLLGLGAETEEIA
>Rru_A1573 Methyladenine glycosylase
MSGYCDAAPGHPLHGPYHDTEYGFPQTDERVLFERLALEIFQAGLSWELI
LRRRPGINDAFDGFEVDRVAAYDEADIARLLADARIIRNRLKVVALIANA
RQIQALRASHGGFAAWLAAQPPQDLSQWVKLFRKTFRFTGPEVVNEFLMS
LGILEGAHRPDCPVALHLAEMRRSATV
>Rru_A0352 RepA
MEHPLFALKAGDSRVRTYERNGFTVTVKPGHDGCATIHDKDLWIYCVSQM
VEARNAGQEVFRVVRFKAYDFLRATNRDTSGRAYIRMGEMLARLTGTRIE
TNIETAGKRERGFFGLVDSAKVVEHDRRNRMVAVEVTLPYWLYRSVEAMH
VLALSRDYFRLRKPLERRIYELARKHCGTQPSWLISLAVLHKKSGSASPL
RNFREDVRALVQSGHLPDYLMSYDPARDMVTFYAFGPTGRVAEAKDMLAG
RPHAPLVAHEKAHARKAGKRPRSANR
>Rru_A2200 DNA polymerase III chi subunit, HolC
MSRFDFYHLQRSTLEDALPRLLARVRKGDQRAVVMAGSPERVDGLNSLLW
TFDAGSWLPHGTARDGDGADQPVWLTIDEENPNGAEVLVLTDGVWPSDPA
RFARILLLFDGGDDSAVARARGHWKAMRENGHELHYWQQDERGGWEEKAR
AAADPGPSKS
>Rru_A0831 CRISPR-associated protein TM1801
MSALTQRHDFVVLFDVTNGNPNGDPDAGNTPRLDPETNHGLVSDVCLKRK
IRNYVELAKGEDSGFHIYVQEGAILNDQHRKAYVALRPDKEKAAKEAKLN
PQNDDEAKALRAFMCANFFDVRTFGAVMSTGINCGQVRGPVQFSFARSIE
PIVPLEISITRMAATNEKEKTAQREGQEGDERTENRTMGRKHIIPYGLYR
AHGFISAKLAERTGFDEGDLDLLLEAVEQMFEHDRSAARGEMAVRKLIVF
RHANALGNAPAHSLFDRVTVGRVIDGEVRAVDDPAIDNRPPARSFGDYRV
TIGREGLPEGVEIIERL
>Rru_A3557 conserved hypothetical protein
MILSASYRCDIPAFFGPWFLARLAEGEVVVPNPYGGRPSRVSLRPGDVDG
FVFWTRNARPFLPALERVAALGIPFVIHYTMTGLPAVLDGATPPPAQALA
VMAQIRRRYGAKALVWRYDPIVFSSLTEAAHHRATFAALAQAVARDGLAD
EVVMSVLQPYRKAVRRLDRLTDLSWRDPAEEEKRALLTELAAIARDLRLR
PSLCAQPALLGPGLAEAACVDGARLSAVAGRAIATKPRPHRACCGCVQSR
DIGGYDSCAHGCVYCYAVGSQERARRAVASHAPFPSPPPDPFDDPKRPPG
R
>Rru_A3209 Ribonuclease H
MPDLSLERACGGRVAGVDEVGRGPLAGPVVAAAVVIDAGRADPALLARLD
DSKKLSAALRQRLATALLADPGVEVGLGEASVAEIDRINILQATFLAMGR
ALAKLAPPVDLALVDGNRLPPLPCPGQAVVRGDGLSLSIAAASIVAKVHR
DAAMATLAQALPGYGWERNAGYGTAEHLAALDRLGATPHHRASFAPVREA
LARSALPGHKCVTALTFS
>Rru_A0732 DNA repair protein RadC
MTPASGETPPNKAVVAPEKAPLPHYSGHRARLRDRFLANPDGLPDYELLE
LLLFQANPRGDVKPLAKALLATFGSFARVISASPEALRRVDGVGDAAVAA
LKTAEASAHRLLKGEVMNQPVLGAWDRVLDYCHATMDHRPIEQFRVLFLD
NRNRLIADELQQTGTINHTPVYPREVARRALELHAAAIIMVHNHPSGDPA
PSAADQDMTLQVRDALRAVGVGLHDHIVVARGGHVSFRSQGLF
>Rru_A3251 A/G-specific adenine glycosylase MutY
MTAPTPDSLPPASVLGERLLDWYRRNARTLPWRAPFGERTDPYRVWLSEV
MLQQTTVPAVIPYFQAFLARWPTVTDLAAAPLDEVLTAWAGLGYYARARN
LHKCAQTIATWRDGTFPATEDELHTLPGIGTYTAAAIAAIAFGQPAVVMD
GNIERVMARLFAETEPLPQGKKALYARAAQLTPTAHPGEHAQALMDLGAT
LCTPRKPACGLCPWRDPCLGRRLGLAETLPAKAPKKLKPTRCGIAFWVTR
PDGTVLLRRRPESGLLGGMIEVPSTPWREDPWTLAEARAEAPLPAEWVPL
AGRVRHTFTHFHLDLDVVAGRVGARANARGLWVPFDQFDRHALPAVMLKV
VRLALARTH
>Rru_A2903 Deoxyribodipyrimidine photolyase
MTIPVLVWFRDDLRLADNPALCAALDSGAPVIPFYLLDDSTSDGHRPLGG
ATRWWLGRSLTSLAESIAQRGGRLVLRRGEALSAVPELAAETDAAALFAN
RLYGMDSLRDDDLFMVLRVAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFT
PFWKTLSATLDPGLPLAAPDSFPPVDDPPPASDSLADWSLEPTTPDWAGG
LRDTWQPGEAGAQARLEAFFNGPVADYASGRDRPDKPLTSKLSPHLRFGE
ISPRQVWTAARHHPPGGGMDAFLRELGWREFCHHLLFQAPTMAEEPLKAE
FLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRVRMIA
ASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFR
IFNPVTQGERFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVT
LGKTYPPPLIDHAHARVRALEALAVVNR
>Rru_A0940 DNA repair protein RecN
MLSALSIRDVVLIERLDLAFGPGLGVFTGETGAGKSILLDSLSLALGARA
DSALVRKGAPQLSVSAEFTLAADHPARALLGAADLGVDGSEPVVVRRVVT
ADGRSRAYVNDQPTSVGLLRQLGQSMVEIHGQFESHGLLDPASHRGVLDG
FAGADSGQPAGLLPAVEAAHATWKAAVTARRRAEADLARARAEEDLLRHT
GTELEALAARPGEEEALAEERALLMNGEKLAEGLNGALGALSQPLPVETA
LRHAMRALERVAPMAGHRLDGVIEGLERASVEAAEAQAQLQAVIGALDMD
PRRLETVEERLFALRGLARKHGLTVDGLPALLEDIRRQIATLEGDEDLLG
GLRKAEENARATYVEAARALSRVRRQAAGALDRAVAAELPPLKLERARFV
TTLEDLPEDQWGAAGLDRVAFLVATNPGGDPGPIHKIASGGELARFMLAL
KVILAAGGDVPTLIFDEVDAGIGGATAAAVGERLARLGQAVQVLVVTHSP
QVAAMGQRHYRVLKSDDGKGGFGTGVDALSPAERIEEVARMLAGAHITDQ
ARAAARSLLSGPGTRAAKAPPSAPRSS
>Rru_A1702 DNA-directed DNA polymerase
MASASEDEAAGDPGPRLTADLLGHEAAEREILETCASGRAAHAWLISGPR
GIGKATLAFRFARFALAGGLEGGEGGLFGALAPASLAMDPAHPVFRRVAA
GSHGDLRVIERGLAEGTGGRRRGEIVIGDVRDLGGFMRMTPSEGGWRVVI
VDGAEDMNRNAANALLKGLEEPPGRALLLLVSHNPARLLPTIRSRCRRLA
LRPLEPAVLATLIERSLPELAETERPGLIGLAEGSIGRAMDLAAMGGLAL
CREMIGLLATAPAFDVARLHGFADQAARDDRAFTATAGLFPWWLARMIRR
GAVAGSAGTAEEMWTIPGESAASGRLLAAATLDRWVEVWEKVTTLFARAE
AVHLDRKQTVLAAFHAVALVAGRS
>Rru_A0178 CRISPR-associated protein Cas2, putative
MGTRRSNAEHAYVVAYDIADPKRWRQVFKTMKGYGQWVQLSVFQCRLDGG
RRIAMASILESLIDRETDHVLMLDLGPAEDVDLAVESLGKAFETLERQAM
II
>Rru_A0653 conserved hypothetical protein
MRIVGGRLKGKVLTAPVGPAVRPTGDRTREALFNVLVHRFQGRDGFSLEG
AIVLDAFAGTGALGLEALSRGAARVAFLEQAPASLALIRANIAACRAEAV
CKVVRGDACHPARASEAATLALLDPPYGKGLALPAVIALAAAGWLAPSAL
VCVETEAKGTPAPLWPEAFEVADERTHGKARMTILRHLAPAQ
>Rru_A2521 DNA helicase, putative
MDALAKTKKDLGNLLRYTEELLSFNDKVVFDLTREKYPRFPEHVVVGLEG
VDIAVDAETWVRARRLRETPPPPCDAMFDGWVDVASHPSPNTPPKLVAER
MLTLPIEEISDLAEAGLLPDLEDVMVPVKADTALPERMDVILRTANMVDF
RRLWQDYIDGPWTAWAQVERPRRQAIDFYNKIYAIHLSLLSMGDDTPIEL
VFGAGMARWATKTERVSAPLIEQLVETELEEDGTLLIRPRRTLPHLALRP
FHALEIEGCKAIERDIGAQFDALVDDPDRGFTPFDTSSFESVLRVCAARL
SATGIYHPDTLGDPGDRTLPAVDGFLRITDTWVLYVRPRGEDIRKDDISR
LIKKLDAVTDESDLPRPARGFVEAPSDTLPFAGEDSLIDLSGADFDLPDR
ALSRSLAPGAGEAFQGVRPAEEIHFFPLPYNDDQQEIIRRLQDDDTVGVL
VQGPPGTGKTHTIANIICHYLATKRRVLVTAKTPEALTALQEKIPEGIRD
LAIAVIHNDREGARQLENAVRILADEAKSINPRIVNEEIREKQARIASLR
ETIATVDRQLLAFANHNLAPMAYGDDTALPMEVAKAVVEESPRHLWFEDR
LTTQARHQPRFSEADIAEIRALRHRHAGDLAYPHEALPKPADLPELARVL
AAHRGLARINEIEAYANAGEIPALSLDNAIGLDGAQTLAEWLQDLGETLN
DLESEGWLFDVYHGLLGLRRMDERALASLKVVLSNWIALCERGRGFALKG
VILEGGAEDPAFDKALEDLAAGRNPFGVFSLFKGGLKSRIEAVRLEGHPP
ATREDWATIQAYRVWRQQLGLFLGRWNAIAQALDLPPLPAEGRGAESAVL
RLGGLVERVWRLHEEVEPCRDALRLLFPYDLDIDEALYHGRTARLAEALA
VNLEKADLADAETVKAEGLAIAQDLPLPFHAALRAICHSLGLTDIPQTAI
AEAWRSILSEAVRLEAIADDIARLDALVGKVSASGAPLWAAKLRTEPPRG
GDDPWTPDDWRKSWDWARAKGHLRSLGDRETVRALSEDRARAEAEQRKLF
AELVRLRTFLGLKLGMSNKVEAALAKFGAAIARLGKGTGKSAGRQRRIIR
EAAMETAQAVPCWILPEWRVAEQLPPDLAAFDLVIIDEASQSDITALPAI
LRGKKVLIVGDDKQVSPTIIGLNDRKIIQLRTTFLSGLPFADQMDPATSL
YELGGMVFPGKAVMLREHFRCVEPIIRFSSGFYPTPLIPLRLPKASERLD
PPLIDIYVPHGRKTGEINRAESDVIVDEITKLTQDPAFQRRSIGVISLIG
SAQARLIYERLVRDLGTEVIEKHRILCGSSATFQGQERDIMFLSMVACPE
TAIMQAERKWEQRFNVATSRARDRLVLVRSVAASHLKPGDLKARLIEHFR
NPMAAGKVIEPTEVLDLCDSGFERDFGRCLLDLGYRLKPQVPVGGYRIDF
VVEGADDRRLAIELDGDKYHGPDRWAHDLRRQKALERLGWIFWRCWGSSW
ISDRQGCLDDLKATMTRLGIEPLGMAGAGDVHTLHIEVARPAIASEPPPA
DLVEAPPTPTEAPLPTPGIGLDLGDGAVLAEGEEIFCFLHKKDAGTRPAN
GVAVARGGALHMNDAPLTPQRRGAWLQAALVVVQKAANDLNPTTGEPRVL
NAWAHWFVRREATLVAIADIRKGVKSRAKRAKAGEEAAEPMLEGIDG
>Rru_A0001 chromosomal replication initiator protein, DnaA
MYESSGVAVNPQNGSLAGADGCDLSASWDRVRGFLKREFGDSAYRTWVVP
MTLVAAVEGEVRLAVPTRFMRDWVMNHYGDRIRSLWAAEDSSIRYVDFIV
ESAPAPAPPARAGQDADRAEGASDPAAGQRPAEAGAPRPAARASRTMVRV
AAEGGAEGADSAPAPLDDGISAPLDPRFTFDNFVVGKPNEFAYAAAKRVA
DSTGVAFNPLFLYGGVGLGKTHLMHAIARGIREASPHRRVIYLSAEQFMH
RFIRALRQQDTMSFKEQFRSVEVLMVDDIQFISGKDSTQEEFFHTFNALV
DQGSQIVLSADKSPTDLENIGARLRSRMACGLVADLHPTTYELRLGILES
KAEHMGVSVPEKVLEFIAHKIASNGREVEGALIRLIAHAQLVGRDLTLET
AQDVLHDLLRTYDKRVTVDEIQKKVAEHFKIRLADMHSARRARAVARPRQ
VAMYLCKQLTSRSLPEIGKSFGGRDHTTVMHAVRKVEELILADGTFAEDV
ELLRRMLEA
>Rru_A0292 Integration host factor, beta subunit
MTKSELIARIAERNPHLYQRDVERIVSTIFDEIADALARGDRVELRGFGA
FSVKRRDARMGRNPRTGETVDVDAKVAPYFKTGKQLRELLNGGESESDDD
>Rru_A0455 NUDIX hydrolase
MISQPAGPAASRIGPAIRSRFIAVYPFARIDGEPRMLMLHRARGVFQGHW
YMVTGTIEPGERAWRAAERELAEETGLIARALYSADFTDSFYNPADECIE
LVPAFLAVVDDDPPITLNHEADAFQWCDRAGVLALMPFAGHRRALADLWP
TALDTPPAPWLRLLPKPAPGL
>Rru_A1741 Phage integrase
MGAIGAQRVQKLYDGMRVKTPAKANAVITMLRILLTHAVREQMVATNVAK
NPGLISLPFSGKLWPVDAVSLFVEVADRMGWHSVGTAVAINHWIGQRQGD
ILAMKRGAYRDGVFYVTQNKTSARVAVPHSPWVQRRVDAELDRQKARKIG
STTTATLLLCDSTNQPWREDHFRHVFAEIRSKAADLWHTFFLDDGSSVAM
LDLQFMHLRHTAVTELAIAGCTVLQIAGITGHTPKSVTTIINRYLVASSD
LAAAAAHKRLAMGNDIAALATLETFQRL
>Rru_A2904 transposase
MLEKGVDADVLRDMIGFAAHRLMELEVQARTGAALGERSPDRLAQRNGYR
DRDWETRAGTVELRIPKVRKGSYFPGFLEPRRMAEKALTAVIQEAYIQGI
STRSVDDLVQAMGMSGVSKSQVSRDCQEFRVRAGG
>Rru_A0832 Protein of unknown function DUF83
MAEGDQPKDEAGWQGEPIPLSALQHAVYCLRQAALIHLERLWEENRFTAE
GHVLHITADKMGGRKIRGTRRVMALPLAAKSLGIAGVGDLVEFRGEADGT
ETPYPVEYKRGKAKLHPADEVQLCAQGLCLEEMTGQAVPEGALYYGETKR
RVVVPFDPPLRDLTVRTIEELRGVFTTLKTPPALFRADRCRGCSLIDLCR
PKATAKPARSWRQRTLASLLSDEEGTGA
>Rru_A0818 hypothetical protein
MWFSDSCKAPWLWGPTMASRSMLDHFSALKDPRQSWRVVYPLPEIPLLVL
CATLSGMEDFVEIRLWGDLRLEFLRRFLPYERGLPAHDTLKGLSGISCTG
ERLNLTPPRLE
>Rru_A1515 Transposase, IS4
MILAAHIQPADVQDRDGALPVLKEVRRLFPFIERVFADGGYQGASTAAAV
RELGMWHLEIVKRSDTTKGFEVLPKRWIVERTFGWLGRCRRLAKDFENLS
RMALAFLRLAMIRLMLRRIARLRKS
>Rru_A1752 Excinuclease ABC, A subunit
MSTQEIRVRGAREHNLRNVDVTLPRDKLVVITGLSGSGKSSLAFDTIYAE
GQRRYVESLSAYARQFLEMMQKSDVDSIEGLSPAISIEQKTTSRNPRSTV
GTVTEIHDYMRLLWARIGVPHSPATGLPIESQTVSQMVDRTLALPEGTRL
YLLAPVARGRKGEFKKELAELQKKGFSRVKVDGTIYEIPEVPALNKKIKH
DIEVVVDRLVVRADIASRLADSFETALELSDGLVFAEDAVSGERHTFSAR
FACPVSGFTIDEIEPRLFSFNNPFGACPTCDGLGVTLYFDPELVVPDPSR
TLNRGAVAPWSGQTPPSPYYAQALASIAAHFGADMDTPWKDLPEEMRRII
LEGSGKEIIPLSFDDGTRSYRTQKPFEGVIPNIARRWRETESNWIRDELS
RYQGSAPCPACGGYRLKPQALAVKINGRHIGEASEVSIAEARAWFAGLEA
KLSPKHREIADRILREINERLGFLGNVGLDYLSLSRNSGTLSGGESQRIR
LASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLITLKRLRDIGNTVIVVEH
DEDAIRNADYLVDMGPGAGVHGGTIVAQGTPEQVMANPASLTGQYLTGKR
SVPVPTVRRQGNGKVLTLRGARANNLQNVDVSIPLGTFTCITGVSGGGKS
TLVLETLYKALARQLHGARDLPGEHDAIEGAEQIDKIVDIDQSPIGRTPR
SNPATYTGAFTPIRDWFSGLPEAKARGYKPGRFSFNVKGGRCEACQGDGL
IKIEMHFLPDVYVTCDVCKGKRYNRETLDVTFKGKSIADVLDMTIEEAGD
FFKAVPAVRDKMEMLQQVGLDYIRLGQQATTLSGGEAQRVKLAKELSRRA
TGRTLYILDEPTTGLHFEDVRKLMEVLQALVDTGNTVVVIEHNLEVIKTA
DHIIDMGPEGGSGGGRVVAQGTPEEVAANPASHTGSYLKPYLSALARRSA
>Rru_A2946 DNA mismatch repair protein
MTIRLLPPVLVNRIAAGEVVERPASAVKELVENAIDAGASRIDITMTDGG
RARILVVDDGRGMDPGELSLAVERHATSKLPGDDLLDIHTLGFRGEALPS
IGSVARLTLTSRAAGAGDAWALTVEGGAKGEPEPASHPQGTRVEVRDLFY
ATPARLKFLKAPRTEQMHAVDVVHRLAMAHPAVGFTLSDGTRQQIRLSGA
QGELFEARLTRLGAILGREFSDNAIAIEAEREGIRLTGHAALPTYNKATS
AGQYLFVNGRPVRDKLLHGAVRGAYQDVLAHDRNAVLALYLDLPPEMVDV
NVHPAKAEVRFRDPGLVRGLIIGALRHALAAAGHRASSTVSLAALGALRP
AQGSGAPALPWGAGGYGGGASHPGLEERRSAYAAQAPAGTPDPWAGRGMG
AGGGSGQAAMAWLAGAPPAAPRLAGEPEAPPTGAEDFPLGAARGQIHDTY
IIAQTRDGVVIVDQHAAHERLVMERMKAALAERGEVARQILLLPEVVELD
EPGAVRVATAAAELAKLGLVVEGFGPGAVVVREVPALLGDTDVKGLVADL
AEGLAEWGTAQALEDRLGDVVATMACHGSVRAGRRLRIEEMNALLRDMER
TPRAGQCNHGRPTYVELRLGDIERLFGRR
>Rru_A0153 Endonuclease III/Nth
MSRPASPRQDRPSSTPPVTPAAPVPLAPADVERFFATLAALSPEPKGELE
YLNPFTLLVAVVLSAQATDKGVNRATGPLFQVADTPAKMVALGEEALRGY
IRTIGLFNTKARNVIALSQALIDEHGGEVPCDRAALETLPGVGRKTANVV
LNIAFGQPTMAVDTHIFRVANRTGLAPGKTPLAVEIGLEAVIPEGYRLHA
HHWLILHGRYVCKARKPECPLCPVRDCCGFPDKTLAL
>Rru_A0266 Phage SPO1 DNA polymerase-related protein
MSTDALPPPPARQAGPLSAPGSFLGQGGEEGHGFDLAGLLGWYLEAGVDL
AVGDSPLDRYALSERAPVPRVAPPAARPPTPAASRPTGRTPGGPRIEDGG
PNDEPPTQAESQRAASFLAAQAGSLEDLRTALDSFRSCALRRTATQTVFA
DGCPQSGMMIIGEAPGADEDRLGRPFVGVSGKLLDAMLGSIGLDRADSCY
ITNVVPWRPPGNRKPTADEVALCLPFLERHIALVRPRLILAVGGLAAQAL
FGRSEGITRLRGHWHDYEGPGLDRSVPVLATFHPAYLLRTPAQKRLAWRD
LLALRQRLDSLPSLS
>Rru_A0185 hypothetical protein
MIAAQAPIRHHRLTIDLTVQAPVLVHATGMGRPGLDSPTLRNARKQIILP
GTLVHGRVRTALTELGELAGVSPDDCKAWFGAEGQNRHQRAKAVVFDDFI
CTTAPNETERSAGTDEIVRIRLDQESGAVQRGMLQVIEAPFPVGQQVTFE
GHVRVAVGDDELSRVCKAIRLALAWNTQVGALRTLGFGRVLSVSVGDRPA
DEPPAPDLSDLDLRPRVASDADPEAVTMVLRFHQPLCVPARTLSNNLFVS
DTILSGATLKGAIAAQWSAALGTPSSHIDQEDYDSTRPHLSAAFARLRVG
SFLPVALARPEGWSADRMRRPVALPLTLGAAGDDTIRDLRTCEPDTVFQI
SKTGETFFSAPRFAPDWKDDDVAAADRARGWHEPDKDLRVRTSIDHERRR
SEDSKLFAYETVLTDKHQWIGEIGLNDASPGETERVLAELKDLLGETGLW
WVGKTKAGATVTWCDGQILEDHLSHGPVTGNSVAWRLVLQTPALMLGPDL
SEDTDAEALFKATATYWSEASEGAVRLTRHWSRQHLWGGAYAAHSYQANH
PYRPFLLTDPGAVFCLEAADGQDSRAREYLTKWRRQGLPLTRSLADHYGL
GADPAEWWQGTPFVPENGYGVIHLDPALPKTMPLAQAREGVVEISMTMET
QP
>Rru_A1516 Transposase and inactivated derivatives-like
MWTKENRRVYERHGLRYPSDLTDEEWALVEPLIPPAKRGGRWRTVNIREV
LNGVFYVLMTGCQWRALPKDLPPKSTVHEYLGLWEWDSTLARIHHALFVE
VRELVGKEASPTAAIIDSQSVKGAEKGGRGSTRLAMTQVRKSKVRSGTSS
STGSP
>Rru_A0450 Uncharacterized protein predicted to be involved in DNA repair-like
MAVIEIATRGTLVSVCDRVLSIGDTLIPADEIDLLIAQVPAVTLTGDALA
LLGREGIEVIVCDERRRPLATLTPICGRAVVSARLLRGQAAMTPRRRGAL
WRQIVRAKVMEQARVLEEIGGPAERLRRLAATIDIDDPANIEAQAARAYW
PVLLERRAEKWVPLFRAIAALTY
>Rru_A3541 MutS 1 protein
MLFFADRSPFVRPLSGYAPVTPAAPRSTGSAAAPPPSPAVLDDRSGTEGD
VTPMMAQYLAVKAAHPDCLLFYRMGDFYEMFFEDAVKAAETLDIALTKRG
RHAGADIPMCGVPIHSHEGYLSRLIRAGIKVAICEQMEDPAEARRQRGYK
AVVRRDVIRVVTAGTLTEDELLDARAHNYLAAVVRLRDAVGMAWVDVSTG
DLVAQPLAEADIGPALARLAPGEVLMPEKLAGDPALREILAPLAGRISPL
PASRFDSENARKRVEGLFGVKALDGFGGFGRAEVAAIGALIDYVELTQVG
RLPRLSPPRRLSLGAILEIDGATRRNLELTETLGGGRKGSLLARIDCTVT
GAGARLLAERLAAPLTDPAQIGARLDGVGFLVSAERVRGDLRDTLRGCPD
IARALSRLSLGRGGPRDLAAIGEALSRIPALRVLVVGAGLGEPPTELTAA
LIDLGSHEGLVDLLGRALDADLPLLARDGGFIRPGYDAGLDELRALRDEG
RRLIAGLQARYASETAIPALKIKHNNVLGYFIEVAAGRADKLMAAGGPFL
HRQTLASQVRFTTVELSELEDKIRGAADKALALEQALFATLCAEVLGCAA
DIARAANGLACLDVAAALADLAARERYARPVVDNSTAFRIHKGRHPVVEA
ALADQAGPAFVANDCDLAPDQRLWLLTGPNMAGKSTFLRQNALIAVLAQM
GSFVPAESAEIGVIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQATE
RSLVILDEIGRGTATYDGLSIAWATVESLHDATRCRALFATHYHELTALA
SRLDRLSCHTLRIKEWKDQVVFLHEVGPGAADRSYGIHVAKLAGLPAAVI
ARAEQVLAILEKGDASSAATRLADDLPLFAAARPRAGLPTPPPGPHPLAE
ALNAINPDEMTPREALDALYRLKAVMKRE
>Rru_A1222 Primosomal protein n
MAGLPALPPGSRELFPEDAHAEPVVAVLLPLPLAGAYDYKVPAGMARPAV
GTLVRVPLGRREEIGVVWGAGAGETPPERLKPLIGFPECPPLPAPLRAFI
DWVAAYTVQPPGAVLRMALSVPAALEAPPPALGWRRPSAGQRAAGQRAEG
QGPLPGGARLSPGRQRVLAVLDDHPGLPFAGADLAREAAVGPAVVAAMAK
AGLLEAVTRSNEWSPQAPDADRPGPLLSADQQAAADGLRTALDQGFSGLL
LEGVTGSGKTEVYFEAIAETLRRGRQALVLLPEIALAAQWPRRFADRFGA
APVQWHSQMGAAARRRAWRAVALGRAPVVVGARSALFLPYPDLGLIIVDE
EHDSAFKQEEGVPYNARDMAVVRARLGGFPAVLASATPSLETIENARQGR
YRHLVLPRRHGGAEMPEITLLDLRRAPPQKWLPTDFAGPGGSEGLAAPGG
ANDEAEEQKAPPPSPTASPSPTASPSPMARPARLGWLSPPLITAVEETLA
AGEQVLLFLNRRGYAPLTLCRSCGHRLKCPRCTAWLVEHRRDGRLRCHHC
GYQQPIPETCPACGVADSLAPCGPGVERLAEEAAHRFPKARMDVAASDTV
TGPKEAAALATRIANHDIDLIIGTQIMAKGHHFPLITLVGVVDGDLGLTG
GDLRASERTHQLLHQVAGRAGRAERPGRVLIQTVDPGHPVMEALASGDPA
LFLEVEAAERQALAMPPFGRLVALVISGEDSARVQAVAAALGRAAPMGPG
LDVLGPVPAPLAMLRGRHRHRLLLKAARGVKVQPVVRHWLSLVSIPPGVK
VQVDVDPISFL
>Rru_A2187 Serine/Threonine protein kinase
MMKKADAKGGNGDIYYLGDGKTVKKVLRNTSTEDRRPRFIKEIDVLRKLE
GEGFSNIVKVIDYDIINDNNPWYTMKRYRGDSNIIIDLTRGNACKAAKLL
LPVAETLMRLSERDPPIFHRDLKPENLLVGGSDDDPRLLIADFGCAYFAS
EDDRLTPEFRAVGAANYRAPEYHHGRVEEVTEKGDIFSLGKILWFFINGI
KDDIFPYTLWFPDLYNLSARFQGVAGIAKANLLIAAATHHDAAHRLLYID
FIAQLRSLAEMDIAEENDDDLNVRALMFDEQMRLNTERREKIVTDLLLLF
MSDLSRAIGSLPQFSETTRMREVRGFEINNIVKGVVRQSSNQPVWNYEGQ
SLKIETIIRPYEEWYAVGPLIQPRTEEPFIVFKICAYNQKRHKNNYDIIY
IIDKENGISQIVDNTQIFHDEKNLYSIFEKAVRFVTALPIRIDYE
>Rru_A0354 Phage integrase
MLTDTKLRNLKPRDKLYKVNDRDGLYVAVTVSGSISFRYNYAIHGRQETI
TFGRYGVGGITLAEARERLGEAKKMIAAGKSPAKEKARDKARVKDAETFG
AWAEKWLRGYQMAESTRDMRRSIYFRELKSKFGNQKLVEITHEDLRALTD
AIVERGAPATAVHVREVVFQVYRWAIERGQKVENPAELVRPTTIARFEPR
DRALTPDEIGLMYQYVERVGTAPSFRAAAKLLLLTMVRKSELTKATWSEV
NFSEALWTIPKERMKRRNPHLVFLSRQALDIFIALKTFAGGSDYVLPSRY
DSDAPMSSATLNQVLTLTYKLAQKEGKPLAKFGPHDLRRTASTLLHEAGY
NTDWIEKCLAHEQRGVRAVYNKAEYRDQRVEMMQDWADMIDEWTQKCRAV
SV
>Rru_A2021 Endonuclease/exonuclease/phosphatase
MRKIGEKTPPLIRVVCWNILHGGGRRVDAILTRIVRHRPDVLILTEFRND
ASGQRLRAGLRDIGLWYEHFVPTHKTSNGVLIAARDYVDAVQPLDTTVRK
PHLLLEGLVAGLSVIGVYMPMGEAKTPYWEAVVAAARRREASPTLVIGDF
NTGKHFIDEKGTSLVSAPFMNRMEEAGFVDLWRARNPEGREFTWFSHKGN
GFRLDHAFASPSLAARVTDVFYSHAERLDRISDHSALILDIQAWTE
>Rru_A0410 DnaB helicase
MTGHFLAAQNDPSAGPAAEATRLPPANIEAEQALLGAILTNNRVLEKVGD
FLRPAHFSHPAHGAIYEACVTLTERGHLANPVTLAPYLDHRTELEEVGGA
RYLAQLVNAVVTIINAEDYGTLVHDLFLRRELIALGSDLVNDAFEADLDS
SAVDQIEGAERKLFDLATTGQTEGGLKSFKDSLIGAIDMAEKAHKREGQL
AGVPSLLVDLDKKLGGLHDSDLLILAGRPSMGKTALATTIAFNAATFFRQ
EAQAGEPSKAVAFFSLEMSAEQLATRILSERAEVSSHRLRTGELANEDFD
RVLQVATQLHSIPLFIDDTPALSVGAMRTRCRRLARSHGGGGNGLGLIVV
DYLQLLQGGKGERSENRVQEVSAITRGLKALAKELNVPVMALSQLSRQVE
SRDDKRPQLSDLRESGSIEQDADVVMFVFREQYYLERAEPLRKPDETDDR
YQERHLSWIKRCEDAYNKAEVIIAKQRHGPIGSVSLFFDGNYTRFGNLQG
GEPPPDL
>Rru_A2278 Transposase IS66
MKLLLRYLLSNAEKDALLTEQAALIERMAARIAELEASVGKPKKTSSNSH
IPPSKDGPGRENRKPQPPRKQRPSRPGVSRPLTETPDKTERRMADICLHC
GKTTPEAGQRCRHRYDHIDLPPIRPVVTRVELFGGRCGCGKRYRAEAPAG
MEPGTPFGPGIRSLLLYLHHSHPVGFERLSRMLQELFGLAISEGAIANAF
RRSQAGLDQARAAIKAKLLTARIIASDETTTRVDGVTQWQWVFISDQAVL
HEIAPRRAKSVAETVLNGHRPEIWVSDRYAGQQDLARVHQVCLAHVLRDV
QYAIDSGDTVVAPKIRDHLRWAIRVGKRRSDLKNSTLAAYAAKAERRLDA
LVGHPTAHPAGRLLQRQIKAWRAKFFVFLTDRGVPPTNNVSEREIRPSVV
FRKVTNGFRSDWGAQIHAGYRSVTGTARLKGQTAFAAVRALVDGQFAIA
>Rru_A0179 Protein of unknown function DUF83
MAPSDTPPSAEDLPSQGELALFAPPATAEDALVPASMVNAWIYCPRLAVL
EWGRGEKARSVDLIAGLRAHQATESGPTPALPDPMVLREDQSLKTRRLSL
SSERLGLTAELDLLDVEEGMVIPVEIKVGKRPSVDEGAYLPERAQVCAQA
LLLREAGYTCLEGALWFAESRERVTVDLTEALVTATLVATSDLRLTVASG
RLPPPLDHSAKCPRCSLLPICLPDEIAWFRKGSIARTPPPPASPALPLYG
QTPGARIGKKDYTLVIQVEGEADRSLALDEISEVVLAGPVSLTTPAIHEL
LRREIPVAWMSSGFWFLGSTGGQGPRSAAVRTAQYALAGDERRRQAFARD
LVSAKIRNGRTLLRRNWRGAEAERQIALDRLARLAERATTAETTACLLGI
EGEAAAVYFRAFPQLFTQAVTTLPAFAFERRNRRPPADPVNACLSLCYAV
LTRTLSSALSIAGLDPWKGFYHTERPGRPALALDLIESFRPVLADSTVLM
VLNNGEIGTNDFLYAGGGCALKPNARRGLIAAYERRLDQETTHPVFGYQL
SMRRLIQVQARLLARFVSGDIPRYPHYCPR
>Rru_A3514 DNA polymerase A
MTEPKHLYLVDGSGYIFRAYHSLPPMTRTDGTPVNAVYGFTAMLMKLLAD
MDADHLAVIFDKARVSFRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAF
NVPCIERDGFEADDLIATYAKRARAEGAIVTVVSSDKDLMQLVGEGVALF
DPMKNRAIGPAEVFEKFGVAPDKVIDVQALAGDAVDNVPGVPGIGVKTAA
QLIGEYGDLETLLARAAEIKQPKRRQSLLDHAEAARISLQLVRLRDDVEV
SETLADFATAEPDAEVLAGFLAENGFRSLLARVTAVAHAKAGTTPQPAAA
PADDDYVLVNTLAELGVWIAKARAAGLVAIDTETDSLKARRATLVGVSLA
ITPGRACYIPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLRDP
GVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELA
GLHLGRRTITFEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLRLYLLL
RDRLLKEHMVRVHETLDRPMVRILTDMEAAGVRVDALRLKALSGDFAKRM
GDLEDQIHALAGHAFNVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQ
VLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGL
TVTATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIEL
RLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAIN
FGIIYGISAHGLAQQLGVGRPEAAAFITAYFARFPEIRSYMETVKEEART
VGWVATPFGRRIPIPGIQDKNPAARAFAERQAINAPIQGGAADIIKRAMI
ALPPALEQAGLATRMLLQVHDELIFEAPEAEAETAAALVKRVMETAVTLT
DDQGERTVPLEVDTGIAASWAEAH
>Rru_A2800 hypothetical protein
MQMDGSSMIFPSSEALPQSPLPARPKEPHSPERELEQLRWARSRPVCPHC
GFRHAYRLEGSQRVRFKCARCRKQYSARRGTVMERSNVPTAGWLTALRLF
ISAPGAGLPARIERATGVSYKTAWSMVQRMRAAPEDPLILGLRQTTPPPG
>Rru_A1133 Excinuclease ABC, B subunit
MTDGAPPWSSPGGRLILRAMTMLLPLFERPPAGPRAEFRLASDYQPAGDQ
PQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLILAPNK
TLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINE
QIDRMRHAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTL
PRADLLKALVELQFTRNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLW
GDEIESVREFDPLTGEITASLDEVTVYPASHHVTPRPALSQAVRTIKAEL
KETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHCKSIENYSRHLTGRR
PGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAEFGFR
LPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTG
LVDPVCIIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLT
EQGVRVRYMHSDIETLERIEIIRDLRLGAFDVLVGINLLREGLDIPECAL
VAILDADKEGFLRSRTSLIQTIGRAARNVGGRVILYADKMTDSLTFAIEE
TSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYEKDYVTVTTGVSGDNQ
LVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDEIRRLEALDLGLPGDA
GATGLAEAAIPLRAAVAKGRGAAAKGRGRKGKR
>Rru_A3799 DNA-formamidopyrimidine glycosylase
MPELPEVETVRLGLTPALVGERLSRVAARRPALRLPIPVDLVQRLTGKVV
GSLDRRAKYLLLRMIDGPVALIHLGMSGSMTVGPLAGHAEPGPHDHILFE
TEAGLRVTFRDPRRFGLITLAEPETLDDHPLLAKLGPEPLSEAFDAEVLV
RRLNGRQAPIKAALLDQGVVAGLGNIYVSEALFRAGISPLRPAASVTGAW
AEALVAAIRAVLGEAIAAGGSSLRDHRQTDGALGYFQHRFAVYDRVGQPC
PGCDCDVARTGGIERMVQSGRSTFFCGRRQR
>Rru_A0633 Exonuclease
MLSRLRRALARRRLKDPAYDFLFHPAPEGEVVSVDCETTGLDRHNDDIIT
LAAVRVRGNRVLTSQKLDLVVKPSRPIRRDAVCIHHLREQDVERGLAPRE
AVARFLRFAGSRPLIGYYLEFDVALIDRLVRPWLGIGLPNPRIEVSEMFY
DWRTRGREELYTGTVDLRFATILEALDIPPLHNHDAFEDAVMTSLAYLKL
RARAGRQSR
>Rru_A3312 Resolvase-like
MVFSQMRQRVEAMKGVGASVQAIAYLRTSSAANVGGDSDQRQRQAIHAYA
QGNGLEVVKEFYDAAVSGADAIDQREGFTDLLGWAATSEVKTIIVENASR
FARDLIVQETGYALLTAQGFTLIAADDPDAFTADTPTARMVRQILGAVSE
FEKANLVAKLKGARDRASISAGKRVEGRKGYDDTNPKLVQDAKRLARKSP
KTGKSRSLRQIAEELTVLGHTTATGKAFSASQVQRLLAY
>Rru_A2710 Gram negative topoisomerase IV, subunit B
MSDLFQDAAAAQPADAYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHL
VAEILDNAMDEAVAGYAQVIDIDLAVDGSVCVRDNGRGIPIDPHPRFPDK
SALEVILTTLHSGGKFGGDAYKVSGGLHGVGISVVNALSDSLRVEVARDR
TLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRARFKPALL
HRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHA
LANRPLVGGRTFAGTANLPDDMGTVEWALCWPEDDEPFFNSYVNTIPTPE
GGTHEAGLRNALTRGLRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLR
DPQFQGQTKEKLASQEATRLVEQALRDPFDHWLTGAPDSANLLLTHALER
ADERLRRRQAKETSRKTATKKLRLPGKLSDCTRSTRQGTELFLVEGDSAG
GSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLAEALGCGTR
GAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLA
MPPLYRLTQGGTSVYARDDAHKDQLMKTVFKTKGKVEISRFKGLGEMPPA
QLRETTMAYATRQLLRVTVPGGKTEEDREDARETAKLVEELMGRKPELRF
RFIQENARFAENLDI
>Rru_A1525 Nucleoside diphosphate pyrophosphatase
MRPTKVSVIERTAAFRGYFHVDRVRLRHELYSGATGPEIVREVFERGHAA
AVLLYDADADVVVLIEQFRPGPWAAGEEPWMLEIVAGIIDAGETVEAVAR
RECQEECGLIPDELVPITRVFVSPGVMTETVALYCGRVDSRAAGGVHGLA
EEGEDIRVVPMAAEAFIDLAQSGALTNATAALAGYWFALNRASLRARWRT
GDVSPGSSAA
>Rru_A1726 Transcription-repair coupling factor
MKNLLESLAVGRRIEAAGLPEGFDALVLGELAARPGVPAVLHVARDDVRL
ARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSEE
PTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGKLLDHLA
RHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFD
PVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYE
AISAGLPFMGMEHWLPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQ
IFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCA
GRPGAAFSAYAAPDVATEKGVVGDFLGRPGHEFADIRARAGGNVFDALRD
HAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAETWAEALERA
KKATVVLTLILDRGFETPDLAVISEADVLGDRLSRPVRKKKLGDKFIPDI
SALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVE
NIEVLSRYGSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAAR
QLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRL
ICGDVGFGKTEVALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAG
LPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGTHALLAKTVRFRDLGL
LIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTGVREMSI
IATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKV
MERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGL
DIPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKT
AAKRLDVMQTLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELY
QQLLEEAVAAAREGPGVEEASGAWSPQIQLGTPILIPDSYVKDLGLRLGL
YRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTIKVLCRRANAE
KVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWE
VARERIQGLGKLMRTLADIADEERPGR
>Rru_A3530 DNA-directed DNA polymerase
MTGLCRDCLCEVLTPSGCCPGCGSARVVRHPGLALLDIAHIDCDAFYASV
EKRDNPSLRDRPLIVGHPGGRGVATTACYIARRFGARSAMPMFKCLELCP
EAVVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFA
RPPAVSLATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQGFTVIDE
AEAPALLAPMPVKRLHGVGAATERRLAELGLHTIGDLQGRPEADLLARFG
KIGRALHAHAWGRGGRTISPDRETKSISAETTFERDLSRLPDLARALGPL
SERVARALTRNALAGATVVLKLKTHDFRILTRHARLGDPTARAEVIAGAA
RRLLERETDGRRFRLIGVGMADLRPGSEADPPDLFARSPPTARDAPAGKE
TGDGGSESPQRTASTASTSGM
>Rru_A1107 hypothetical protein
MAQEPEVAATASGGGEPPVLRDRYEIDPAKPLPGLDMPNAHAFRVTDKRN
GQRALYALVCDGPLPPRTSAMRTLRGVSAPGLVPLVEWGVVDWPPIDGRC
VAVVYERPLGGRLMKSEDEVFQPVPDQSFAKIIWRPLIAGLTELQGRSIA
HRAIRPTNLYWMDREQTRIALGDCTTSPPAYDQPVGCETIESGMASREGR
GGGYYPDDMYALGATLVIASVGNDPLAGVAPEAIVSAKIANGSYSTVVGD
ERVPLGVIELVRGLLVDDQEQRWSLETIELWTNGRRMNPMQTRQEKRAQR
PFVFRGAEYYTRRALAHALSQDWETGVQPIMEGKVETWLRRGLELGDLAD
SVGNVVRAANVTAKDVGPVRDMAVAAVLTLMDPRAPIRYGKVRVHMEAFG
TAMACTLAMRGDIRPYIDLIQRDITKTWIAAQEAFSSDFGRFDAEFKDLR
TYLVQTSKGGGIERCLYEMNESLPCRSALLRNQCVLEIGDLLPALEWVAA
KADQKQSPADRHVVAFVAARYPKDTMGQIHALNDEDPRKAALGVLSLLAV
LQWKLGPESLPGLAAWLGSQMAPAINSYHSRERRKRIEKELPKVVRKGSL
PDLYFLLDDSKERQLDLDGFLAARQQYAQAAQQVAALESGNYRVSETSER
LGQQTAASVSVAIAIVTIVFVSISRLI
>Rru_A1126 ISBm1, transposase orfA
MTRRRYELTEYEWSVIQPLLPNKQRGVPRVDDRRVLNGILWRFRTGSPWA
EVPERYGPPTTCYNRFVRWRKAGVWDRLSEEVSKTYDGDIVMIDSTCVRV
HQHGATGKKGILRMAAWDVPVAASSAKSTRSSMRKAAPSPCG
>Rru_A3485 hypothetical protein
MKTVADIHADILKRHAKSPSRFGYFFLQWIKFMDHNDRLYAARGEAGENY
LQYRLGLNHVDESAAIFETLLSFWKEREQEDRIFSYLTHEDTDGNGIWHY
LADTLREHEGTSTLRMARTLLAMDIDFSKRNRSGQSPLNKMLVPLPRWQS
INALIQTKHLSIENIEAAIAERAKDEDQRNALMSMIFSSDIEQNQAMLSQ
HVLRQALQPQADVTLRAATCRLFFDYVDTKTGGTAFFKLVTIANHAMFDD
LMRLLMRNTSETVVAMGVPDIATRKAYAQAYLARKLLRREHSGGGVLFSA
LKAGKHTHLRKITSLLRNDDLVIRTTVRGELVRKDLPVDKNSPAPTNPLL
SLLLQRDKEGNTVMHRAVLTGDLQALKGFFSGLTPNDTYAIIRLIPNIWG
LTLATACRPELVQAALAQAVKSGKLPMDRAKALFSAYPKDTRDIVHFIEE
TVNEIESLAKAVGRKEPLPPTFRLETLRANK
>Rru_A1668 Integration host factor, alpha subunit
MSGKTITRAQLSEAVYQEVGLSRNESADLLEMVLNEMSEALVEGDTVKIS
SFGSFSVREKGERVGRNPKTGEEVPILPRRVLVFRPSQLLKARINDGAVG
SQING
>Rru_A1582 DNA polymerase III, alpha subunit
MPDPSPASSALAGGSPANGFVHLRVHTALSMSEGAIQVKALVKLCAKMGM
PAVAITDSGNLFGALELSVTACDMGVQPIIGCQIAVRNEEVRERGFGAGR
DLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEGDGSEAPQVRLADIEAL
NDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVYVEIQRHG
MADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTV
IGDETRRRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRK
PILPHSPAVKGRTEAEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKP
YRERLAYELDVIIKMGFPGYFLIVADFIQWAKDADIPVGPGRGSGAGSCV
AWALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQR
EYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKICKMVPNNPAAP
VTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVIG
DRPLDNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHA
VRHIAKRGITVDLLDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNM
KPDTLEDIVAIVALYRPGPMDNIPSYIKRKKGEEEVVYLHDSLEPILKET
YGILIYQEQVMQAAQIMAGYSLGGADLLRRAMGKKIKAEMDTQRALFVEG
AGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVAYQTAYLKANYPV
EFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVEDGAV
RYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLEN
LIKAGALDSLDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATS
EPPMKFRACAAWTITETLAHERDAMGFYLSAHPLDIYGDSLERLDVVPIE
MLPGHLRGGGSGAVKLAVTPGARKERIGKSGSRYAFVELSDATGSCETMV
FSEVLGASRELLDSGRPLLVRADARLEGEEVRLLAQAIELLDDAVARAAR
RIKVSFSDSGPIPRLAEIIRADGPGNRNILLVADLGDREVEFRLDGGFAL
RSETLAALRNVPGVGEVREV
>Rru_A3178 Holliday junction resolvase YqgF
MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRR
KFTLDVQELFALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLAL
RDLPVLLWDERLSTAAVNRFLVGEADMTRARRAEVVDRAAAAYILQGALD
ALDRQRPEQAF
>Rru_A0939 DNA ligase (NAD+)
MIPVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRN
NEIEAAFPELVRGDSPSAHVGAAPAEGFAKVTHALPMLSLGNVFSDDEAR
EFDQRIRRFLSLDGETTISYVAEPKIDGLSFSARYENGVYRRAATRGDGT
TGEDITANLATLTDLPQRLTGDGPVPEVLEVRGEVFMTKADFRALNQRQI
DAGAKPFANPRNAAAGSLRQLDPEITRSRSLSLFAYASGEVKGLEVESHH
AFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDGVVYK
VDRVDWQKRLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPV
AILEPVTVGGVVVGRATLHNEDEIARKDVRIGDMVTIQRAGDVIPQVVEV
LLDQRPADSAPFVFPETCPVCGSHAVRQEGEVARRCAGGLICSAQAVERL
KHFVSRDAFDIEGLGGKHIETFHNEGLITQPADIFALEAKDNEPGALQHL
RSREGWGPKSAENLFKAITARKTIPLDRFIYALGIRQVGQATARLLAGHY
ASFAAWRKAMDEAQTEGSEAFADLQNIESIGPSVARDLVAFFGEEHNRAA
LDALIDAGVEVLDFARPQAAGDSPLAGKTVVFTGTLDTMSRGEAKARALA
LGAKVTGSVSAKTDYVVVGADAGSKEKKARELGLTVLSEAEFRAMSGG
>Rru_A0089 ATP-dependent DNA helicase RecQ
MVPDVSPLPSPGSPLPSPGSPCADAVSADPARVLLADIWGFKDFRPGQEA
IIRAVLGGEDVLAVMPTGSGKSLCYQLPALMRQGVTLVVSPLIALMRDQV
AQLDALGVAAGALNSSIDMDGYRRVMDGLRGGRLKLLYVAPERLARPDTL
SLLRDSGVTALAIDEAHCVSQWGHDFRPDYLCLGKVREDLGGVQTVAFTA
TADAATRDDIAGRLFPAPPRLFIGGFDRPNLRLAMRPKGDTRRRMFEFVA
AHTGESGVIYCGSRARTEELAEGLRGAGHRALPYHAGLDKPVRDANQDAF
LAEDGLVMVATVAFGMGIDKPDVRFVCHADMPRSIEAYYQEIGRAGRDGL
AADTLTFYGLDDVRLHRMRIEESQAGDEQKRVEIQRLNALLALCEAPRCR
RQTLLGYFGERTEPCGNCDLCINGVESFDGTIEAQKAMSAMLRTGQRFAT
EHLINILVGTQTDAITQYGHDKLPTFGVGKDHTRNVWRSIFRQISAGGLI
SLDIANHGRWLMTEAGRAVLRGQAGVALRSDVLEAAGRGERKDKERRASA
PAVQLEADDRALFDALRAKRQELARAENVPAYVVFADRTLIELATKRPPS
LDAMREIHGIGQSKLARYGAAFLEVITAG
>Rru_A0214 MutT/nudix family protein
MSFLKHVQDCNTHDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTR
DAVLLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPT
LMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLD
NMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAG
IKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFN
VNLTVIDFAIRHGLIDPDNEPDYQEILAGLRGRPRERAASPA
>Rru_A1230 NUDIX hydrolase
MTPQPPLSAAGLPYRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDA
GEDPETAAWREMEEEIGTRNALLLGETAGWLGYDLPEELRGRLWGGRFQG
QRQKWFAFRFTGQDADINLATAHPEFDAWRWVDVDTLVALIVPFKRPVYE
QVVAELAGFAVPQPA
>Rru_A1784 exodeoxyribonuclease III xth
MVSIATFNVNSVKARLPNLLDWLGTRSPDVALLQEIKCLDEAFPRAEIEA
LGYRLAVHGQKAYNGVAILSRLPLSEVTARLPGLDGAPAEDDDQARYLEA
VVDGRFRVCCLYLPNGNPVEEDRKFGYKLAWMDRLIVRATHLMRDFPDTP
VILGGDFNVCPDDLDVYDPAGWANDALCRPETRQRFRALVFLGYTDALRA
LNPGAPLFTFWDYQAGAWQKDHGLRIDHLLLNPAAADRLSAAGVDRATRG
HAKSSDHAPSWVTLEL
>Rru_A0367 NUDIX hydrolase
MENGEGTADRGAGLSRSAAQGPDRPWSSGLLDRALLRRKLAAGKGLGKRS
DWAVSGDLGGTAPSGFQRPPEGCRPAAVLVPLVDHPGAPSLLLTRRTAHL
ANHAGQIAFPGGRSEPEDASAEATALREATEEIGLPASLVDILGRLDDYV
TVTGFRVTPIVGVVSPPFRLIPDPFEVEDAFEVPLAFVLDGANHRRETRQ
VKGERRAFYAMPYREHYIWGATAAMLMNLHAVLGRTEGEGEVG
>Rru_A3692 Protein of unknown function UPF0102
MRRSRRQGERRGRWAESLCVWWLRLHGWRILARRFRSGRGTGAGEVDIIA
RRGRLVAFIEVKARAEAARALEAITPRQRIRITRGAEAFLGRFPLPEKGQ
ARFDVMVIAPWAWPRHLKDAWRLGL
>Rru_A1154 Protein of unknown function DUF48
MVGSGGTGAPPPRSSPMTTLYVTQPGSVVRSEGGSLTVWVETEADDPGPN
DSPVRRKRLASVEPHRLESLVLLGFTTITANAMRLCMANKIAVSLLDGGG
GLAARVVPPEARSADLRLHQYALHLDPPERLIRARAVVTAKLRNAAAVLR
GIRSNQASSAALASAITQTEASAEAAAAAVSAESLLGIEGNGAHQYFAGL
RTAFVGGIPFLGRAQRPPPDPANSLLSFGYVLLGNRLTGLLEARGVDPCL
GFFHDLRPGRPSLALDLLEELRHPVVDRLALRICNLRKIQPQHFEPDAER
PGGVKLTVDGRKIFLEEWEGHLARPLREPGVAAEHRLDVHRLLQRQVDRL
VSDLRGGEPYRPFRFGTSRPG
>Rru_A3358 Methylated-DNA--(protein)-cysteineS-methyltransf erase
MTPLFIDRPDSPLGRLLVVADDQSLRGVDFADNEARLMRLLEVGDGAALI
PKDDPLGASSALAAYFAGDLTALDALPVHYGGTPFQNRVWKALRTIAFGQ
TLSYAALAERIGAPGACRAVGRANGLNPLSLVLPCHRVIGGSGALTGYAG
GLARKAWLLRHEGLAIEGFRLAPAPRLSDVENCRPPIPGAGRPTPAPFRR
HP
>Rru_A1517 transposase of ISBst12-like element
MKLPIRYLLSDAEKDALLTEQAALIERMAARIAELEASVGKPKKTSSNSH
IPPSKDGPGRENRKPQLPRKQRPSRPGVSRPLTETPDKTERRMADICPHC
GTATPEAGQRCRHRYDHIDLPPIRPVVTRVELFGGRCGCGKRYRAEAPAG
MEPGTPFGPGIRSLLLYLHHSHHVGFERLSRMLQELFGLAISEGAIANAF
RQSQAGLDQARAAIKAKLLTARIIASDETTTRVDGVTQ
>Rru_A0159 Exodeoxyribonuclease VII
MIDTPNAPVHNLPELSVSELSGALKRTIEEAFSRVRVRGEISQPKVAGSG
HCYLRLKDDQAVIDAIIWRGTMAKLALRPEEGLEVIAIGRLTTYPGRSSY
QIVIESLELAGEGALLKMLEERRRRLAAEGLFDAGRKRRPPFLPSVIGVI
TSPTGAVIRDILHRLADRFPRPVLVWPVAVQGEGAAAQIAAAITGFNALP
AGGPVPRPDVLIVARGGGSLEDLMAFNDEAVVRAASASAIPLISAVGHET
DTTLIDHAADLRAPTPTGAAEMAVPVRLDLLAQVRERGGRLDGATLRLIE
ERRLRIEGLGRGLPDLARLIGTFAQRLDDRAERLEAALPRLLDRRADGVF
HTAARLRGPGEMIARKADALERAGRGLETGLARGLREAASRLDQRADRLR
PGQIARLVAEGSRALTTLAGRLDDLGRQTLVRRQDTLEGLGARLDNMSYR
KVLERGYAVVRDATGAIVPAARGLTKGDGVVLDFRDGRVAATIGEADPEA
IPGQPAPETPPTAAGRSPARRPRSAGEGRQGDLLKDL
>Rru_A0208 SNF2 helicase-related protein
MPGFLTADLIRARLAPKDFQRGEEYLKDGRVLKAEWVADDEISGQVAGSA
GRRYVQTITLENGLGGLSIVGYCSCPVGFACKHVAAVLLTLAREAEPVVP
AWDGSFGARPAQAAVSEPTLDPALAEWIAAVAGFEEVGDPEAYPPAIRHR
LIYVVGPQGEGGVPQNGEGRSESRGGGRVSAEIEVTLWSIAVLKDGQMSS
VERRILSADALVRSPARPAYLRPSDLALVPRLAALRAPGGGNALLLPQIS
GSELFAAMVASGRCRWGGPDGPTLYPGAARRAKLVWRSDGEGWQRPAIEP
EAMAPEAADPETAQPDIGQPYIAQPAIPEIGALDGEAVEAPTRTDPDDAS
PAPEDGESGQSPEAEAWDLRALPIEPPAYVDPRSGETGPLDLGLDPRLAA
RLLSAPPIPPTSVDAVRSRLGALLPAAVPVLPAPIDAQPLSVAPQPILRL
LALRAVPRMRGAEMPGETTQALVARPCFAYDSVILPADSSEPAPLRMVGA
SLMRIERDFAAEGTALRQLDRIGPLRVAEALGRVRVEGGISADRLIAPPF
LPRGEERERAVDFLRDGVPDLEEAGWRIEIDPDFPVRPVVADSQDWWGGL
NAVGGLEGTVGGWLSVGLGVTIDGERVDLLPALLTLLGEGEDLVEREEDE
LLYLPLGDGRVLPVAVRRLRPIFHALHAVAVPDERAGPGVRLSGRDLGPL
ALLEEAGKPLGVVWEGAEGARDIARRLAVVGLREAVAPPKGLVGSLRAYQ
NEGLDWLQFLRANNLGGILADDMGLGKTLQTLAHILVEKESGRLNDPVLI
VAPTSVLGAWRREAAQFAPGLRLVVLHGPERAAGFSQMADQDVVVTSYAL
VRHDLEVLKAQPWHMLVLDEAQTIRNPQTVQYKAVAALKARHRLFLTGTP
LENHLGDLWALMDLLMPGLLGDGATFRRVFRGPIEKRGDGPRRRALAVRV
RPFILRRTKDEVATDLPAKTEMIDMVELEGGQRDLYEAVRLAAHKAIREV
LAEKGLARGRIHILAALTRLRQVCCDPRLVKGGPRKPPPSAKLDRLEEML
RDLVDEGRRTLVFSAFPSMLALVEERLAAASIPWVSLTGETRDRDTPVTR
FQSGAVPVFLISLKAGGTGLTLTAADTVIHYDPWWNPAVEAQATDRAHRI
GQDKPVFVHKLVAAGTVEERILALQDRKRGLLDGLFDGEAGPSSLLSEEV
IEEILRPLG
>Rru_A1536 UvrD/REP helicase
MDDPFELDEPSPPAPRFQGAEPPWLAGLNPEQRAAVTTTDGPVLVLSGAG
TGKTRVLTARLAQILATRPVRPWQVLAVTFTNRAAREMRERAGAMIGPMA
EQVWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQILEAEGI
DTKKWTPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQ
RLAVVNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQ
YLWLRLLARGHGNICCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRL
ERNYRSTPTILAAASGLIRHNKGRLGKDLRAGEGDEAGDAVIVRGLWDGE
EEARRVVDDIETRQRAGDRLNGMAVLVRAGFQTRAFEERLILAGVPYRVV
GGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDASLQTLM
RASRMASISLMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAP
DELCGTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALKEFESLGAFLE
HVSLVMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALD
ENGAEALEEERRLAYVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDE
LPPEVVERDSASGVYGSGAQGYADAPGGWGRLGGPGSWGGGWGNAAPARV
PAAGDTPWQTRDRSGDDQPSLRPGDRVFHDKFGGGTVLAADQGRLEIDFD
KAGIKKVMGGFVRKAEGT
>Rru_A1088 DNA recombination protein RuvA
MIAKLKGLVDSVAEDHAVIDVGGVGYLVFCPARVLTRLPSPGQAVALVVE
TQVREDHISLFGFLETAERDWFRLLSTVQGVGSKVALSVLSVLSAGQISQ
AIAAGDKAALGRAPGVGPKLAARIASELKDKAVALGGMPAPPPRGAGTDA
AGEGPPGGPTGDVLGDAVSALVNLGYGRSEAVGAASRAAGLGATTVQGVI
GLALRDLGRGGA
>Rru_A0242 Type III restriction enzyme, res subunit
MSEAFFDRPILNSPYEYPSQHWELDAEGQPTNKIIGSRRRSDLITPVPKP
KKRKKPKTPKEQSGFVFDSGDGLSTAEQEYNPTPIINEIRQHVGSWRSLP
NPSDWLVTPETARLLQHWRHHTFHGVRPFFCQVEAVETAIWLTEVAPKLG
KKGERFWDHIKGANEQANPELLRLALKLATGAGKTTVMAMLIAWQTVNAV
RHPNSKTFSRGFLLVAPGITIRDRLRVLLPNDPESYYRNRELVPADMLAD
TERAKIVITNYHAFKLRERLEISKVGRALLRGRGPELNTLETEGQMIQRV
MPDLMGLKNIVVLNDEAHHCYREKPQNDDLDDLKGEDKEEAKKNNEAARM
WISGLEMVKRTLGLRAIFDLSATPFFLRGSGYAEGTLFPWTVSDFSLMDA
IECGIVKLPRVPVAQNAPGDTLVFRNLWDHIGKKMPKAGRSGGKFLDPLS
LPAELQTALYALYGHYEKTYDLWQQERVEVPPVFIVVCNNTSTSKLVYDF
ISGFYRPGGQEGASFLENGRLALFRNYDDHGNHLPTPRTLLIDSEQLESG
DALDKEFRASAADEIERFRRDIRQRTGDIKRAENITDQDLLREVMNTVGK
KGKLGEQVRCVVSVSMLTEGWDTNTVTHVLGVRAFGTQLLCEQVIGRALR
RQNYELNEETGLFNVEYADVLGVPFDFNAKPVVAPPVKPRETVRVQAVRP
DRDALEITFPRVEGYRVELPDERLVATFTQDSVLDLTPDLVGPSITTNQG
IIGQDVDLTIGHLNNMRQSTILFHLTKHLLYSKFRDPGDEPKLHLFGELK
RITRQWLDDGYLRCSGGTFPAQLVYQGIADMAAERIKAAITLSLVGYHPV
KAILDAYNPTGTTATVNFTTSKPLRWKTDAGRCPINWIVCDSDWEAEFCR
VAERHPLVRAYVKNHGLGFEVPYLFGSIPRRYLPDFIVQVNDGRTDPLNL
IVEIKGFRGEDAKDKANTMHAYWVPGVNNLGKFGRWAFAEFTAVYEIEAK
FNELIASVVADQAA
>Rru_A2408 RecJ exonuclease
MTDILTPAAPPALPTRDAAFLGVERSRGGRRWVLRPGDERQALAISQRLG
VPEVVGRVLTGRGVQVEEADGFLTPTLRALLPDPGHLLDMDKAVARLSKA
VRDKETIAIFGDYDVDGATSTALMHRFFRSLGARVLIHIPDRVLEGYGPN
APALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHHEARTEL
PAAVAVVNPKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRP
PPDLMALLDLVALGTVCDMVPLIGVNRALVQQGLKVIAKRTNPGIAALAE
VSGVRDRVDAFHLGFMLGPRVNAGGRVGQAGMGAALLSSEDPLECLDFAR
QLDAFNGARKEIEAAVLHQAIEQVEAAPANDLPLVFASGTDWHPGVVGIV
ASRLKERYGLPACAVALDGGLAKGSGRSVGGVDLGRVVIAAREAGVLEAG
GGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLDLDGVLDVRG
ANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPS
GGSLKAMAFKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVD
DVAPCS
>Rru_A3621 Methylated-DNA-(protein)-cysteineS-methyltransfe rase
MPRITLASPVGPLWLEERHDALVALGWGEDETIPPPGAGALAATPLLAEA
ALQLAAYFAGARQGFDLPLAPGGTDHQARVWAALREIPFGRTESYGALAA
RVGSSARSVGTACGRNPLPILIPCHRVLAAAGAAGGYSGRGGLETKRRLL
ALEGVPLPGETLSLF
>Rru_A0074 Helicase-like
MTDPGTPTRITAVLGPTNTGKTHLAMERMLGHASGMIGFPLRLLARENYD
KAVRRVGASRVALVTGEEKILPPRPSYFICTVESMPIDRRVDFLAIDEIQ
LCGDPERGHLFTERLLNARGREETMFLGAETMAPLIRKLVPGCQFDTRPR
FSQLTYNGHRKLTRLPPRSAVVAFSADDVYAIAELVRRQRGGAAVVMGAL
SPRTRNAQVALYQSGEVDYLVATDAIGMGLNMDVDHVAFAALSKFDGQGQ
RGLSAQEVAQIAGRAGRHMNDGTFGVTGDAGPIAEDTVARVETHAFAPLR
QIFWRNPRLDFRSVEALLKSLGAAPPDEGLMRPRRAEDQQALEILAQDPE
IAQAAVGPQKVGLLWDVCRIPDFRKLRAETHVRLLGQIFRHLTAGNRRLP
DDFVAGHAKRMDRNDGDIHALVDRIAGIRVWTYVSHQGDWLGDPGYWQEA
TRAIEDRLSDALHEKLTQRFVDRRTATLMRRLGERAMLDADVAATDGRVN
VEGHDVGRLEGLTFHAEATGGREGDKAVLNAAQKALRREIGERVQRLAAD
DDPVFSLDPAGQLLWRGAPVARLEKGPEVLRPLVTLPAESLLDAAQAEAV
KTRLEAWVKHHLGTRLKPLFALDLAPLKGAARGLAFQLAENLGTLSRSAA
NEHVDGQVRALSEADRKALARAGVRLGVECLFMPDLLKPDPQRLLAVLWR
IDAGRHGGDVPADGRVSFPVDKRVPHAFYHAIGYRVVGDTAVRVDMIERF
AADVRRLVRDALPAKGKPADVSATPAEAAPETAADSAGAGGDAATPTPVV
DATTPTSVVDATTPTSVVDAAPETPGNAPIDTPAVAVAAVEGPSTEASAE
PTEAPEAAAEAAPEAAVEADRAGEGGEEATAAAGPTGRPAKPEPPQAREG
EVHLPPDMLPPLGIGAEEGVGVLTALGYGVRLEAGALFLRPRRRKVSHGH
GHAHGAGQAPGRSQGGRGRGPAAARPAGEAASAGDPAQERKARPHTAGDR
PPRDGEGRDKASREPRRGSGKGGGYKGDGKGGGGASTTAYSSGPRPARSE
INPDSPFAKLRELMGR
>Rru_A1728 ATP-dependent DNA helicase RecG
MRPSLLDPLFRPLTSLKGAGKTMAPLIARLIGGDKVVDLLWHLPSGLVDR
RFSPLIAEAPDGVVVTLTVVVEAHQEPPPRSPSPYRVVCRDASGFVTLVF
FHGRARYLNDLLPVGETRVISGKVERFGGAPQIVHPTHVVPLAEAEAVCR
VEPVYPLSGGVAGKVLARLIAQALDDIPDPAAWPDEWIDAPLKAREGWPG
WIDALRAVHAPEEAEDLRPDHPARRRLAYDELLATQLALLLVRRAARTVR
GRPIVGTGALRAKVLAALPFALTGAQSRSLAEIDGDMASPARMLRLLQGD
VGSGKTVVALLTMLTAVEAGAQAALMAPTEILARQHIETLAPLCASAGVR
LGLLTGRDKGRARAALLEALAAGEIDILVGTHALFQDDVVFAALAVVVVD
EQHRFGVHQRLALSDKGRAVDVLVMTATPIPRTLTLTHYGDMDISRLDEK
PPGRLPADTRVLPIDRLDDVIAAVARAIDGGAKVYWVCPLIEDSETGDMA
AAVDRQALLADRLGPRLGPRVGLVHGRMKPGEKDAVMEAFSGNGLDLLVA
TTVIEVGVNVPSATVMVIEHAERFGLAQLHQLRGRIGRGGGRSTCLLLYA
PPLGETARARLETMRRTDDGFEIAEEDLRLRGAGEVLGTRQSGLPVFRLI
DPLLAEDLLAIARKQAEVIVETDPDLAGPHGAALRVLLYLFERDAAVRTL
RSG
>Rru_A1860 Uracil-DNA glycosylase superfamily
MTACNPQAPGVDCPRCPRLVAYRLALRRDFPDWANAPVPSFGPLGARLLV
VGLAPGVRGANRTGRPFTGDYAGDLLYATLIDLGLMTGVFDRRADDGLTP
IDVRITNAVRCVPPENKPTGPEQVACRPFLAAEIAAMPALRGILALGRVA
HEAILRTLGQPLKAHPFAHGALHPMPGGLLLGESYHCSRYNQNTGRLTNP
MFREAVTRLVEAIS
>Rru_A2190 TRm3 transposase
MSRRKEPAIPNALLDQLLAGGDASAAFEQGGLLDALKKALTERTLNAEMD
HPLAGGNGAGNTRNGYGRKTVMTDTGSLAIDVPRDRQSSFDP
>Rru_A1915 DEAD/DEAH box helicase
MTEFASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGT
GKTASFVLPLLQRLTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGR
TLSAIRCGVVVGGVDILRQTRMVQRGLEILVATPGRLQDLMNRKAVDLRA
IEVLVLDEADRMLDMGFAPAVKKIAAVLPRKRQTVMFSATLPNEVTGLVA
SLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDLLGDARKVERA
IVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRA
LVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSL
CAPQEMPYLKAIEKVIKSRIDVDSTHAFHTPSMARAHGSHGHR
>Rru_A0833 Protein of unknown function DUF48
MKKLLNTVYVTTEGTGLRKDGENLVAELDGVQKGRVPLHMVGSVVVFGGT
YVSPGLMGACAAHGITIVLLDRVGRFQARVEGPVAGNVLLRRAQYKASEA
PEDIVKSLILGKVSNQRAVLLRALRDHGADFPAAEALAVKDAIDRMAHIL
RKVGASAEDADHLRGAEGEAASLYFGVFGQLIRSPDGDFAFRGRSRRPPL
DPTNALLSFLYTLLTHDCRSACESVGLDPAVGFLHRDRPGRPSLALDLME
ELRPVLVDRLALSLINRRQLRATDFQRLDGGAVLLTDEARKTVLSAWQER
KKQERRHPFLEESAPLGLVPYLQAQMLARHLRGDLDAYPPWFWK
>Rru_A1744 DNA gyrase, subunit A
MSTNTPKPIDLDISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVH
RRILYSMKESGYEFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQN
FAMRLPLIDGQGNFGSMDGDRAAAMRYTEARMAKAAHSLLDDIDKETVDF
QPNYDETTREPIVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACC
AMIDNPAVTAEELLELVPGPDFPTGGTILGRSGVRAAHLTGRGSVIMRGR
THFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDES
DRRGVRVVIEVKRDAMAEVVLNQLFRYTPLQTSFGVNMLALNGGKPELLA
LRPIIEAFITFREEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKL
IREAPDPQAAREGLMARDWPAMDVEPLIKLIDEPGRMVIDGVYRLSEIQA
RAILDLRLHRLTGLERDKLHGELIEIGQQIEEYLHILRSRARLFEIMRAE
LVEMKEAYATPRRTTLEENEFEHDIEDLIQREEMVVTVTNTGYIKRVPLT
TYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYKMKVY
RLPLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATET
GNVRRNRLSDFTNVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGK
AIRFAVGDVRVFAGRTSTGVRGIRLAEDDRVNRLSILGHVEASAETRAAY
LKQASALRRASGETEGEDDSTLDAEPGVLSAEEFEDLRQREEFLLTVTSR
GFGKRTSAYEYRVTGRGGQGIANIEMSERNGTVVAAFPIANEDQVMMITD
GGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPEMNGNGDDG
EGDDETPDESLAEDANGGRDESGEASGLPPAGQSPERNGDDAD
>Rru_A1386 DEAD/DEAH box helicase
MDFFPAGHPLTQALIERNYTEPTAVQTAVLEPGAQGRDLLVSAQTGSGKT
VAYGLAIASTLLGDEAVLEPATEPLALIVAPTRELALQVHRELAWLYGHA
GAKVVSCVGGMDPRAETRRLGEGCHIVVGTPGRLRDHLERGNLAVGRLKA
VVLDEADEMLDLGFREDLEFLLEATPQERRTLLFSATLPKAIVTLAKRYQ
REAWRIAVAAGKQGHADIEYRAISVAPNEVEHAVVNLLRYVESPATLVFC
NTRESVRHLQAILLERGFAAVALSGELGQGERNQALQALRDGRARVCVAT
DVAARGIDLPNIGLVIHAELPQNAQTLQHRSGRTGRAGRKGISVLLVLFS
RKRRAEQLLETAGVRAQWGGAPSADDIRALDQERLLQSPLVSEDLTEDDL
AMAKALLAVRSPEEIAAALVRMYRAQLPAAEDVFAAGTAEPSPEPRARRP
ASRDRDRDGEREPMTEPRPGRNSGLSGPSVCFRLNVGRQKNADPRWLVPM
ICRLGKITKQEIGAISIFERDTKIEIAAAFAERFIAAVGQVERGDIRIDP
WVETSRSKPVDALEVATAGDEAAAAAPRASAPRAPRASEPRVTKPYEPRA
PRSTEPRAPRAARSADRPTEARAPRTAEPRPPRASDRASEPRAAKAPRRT
EKPAVGKAMVKTWGKPKPGSRPKTKQK
>Rru_A3611 DNA polymerase III, epsilon subunit
MREIVLDTETTGLDPATGDRLVEIGCIELINHMPSGNDLHLYVNPERDMP
PEAFRVHGLSEAFLADKPLFAEVVDEFLAFIGEDRLIIHNAAFDMKFLNA
ELARLKRPPLPMSRALDTLRMAQARFPGAQASLDALCRRFGVDTSSRTKH
GALIDCVLLAEVYLELIGGREPGLALSADKRRDGAAVQVARPFRAPRPHA
ASPEELAAHEEFLKKVKDPIWRRDAPNPPS
>Rru_A1149 Protein of unknown function DUF324
MSRLRFDIEGKVTALSPLHVGTGDFTTIEGLSGKAGANAAPQVARIARDA
MARPMIPSTALKGVLLTLARSLVDVSDETLEALFGTIKAETGADDEPSGR
MGAVTVFSAYRVSEAVDVSCYPYGRDGCFVAARTSIDGASGVAANAKLFH
QEMVAPGTTFGFRCRIEARGAAVASAKGHLEALLPILSALTDENGVPVGK
GQADGFGRLRLDGKSLKISQWSLDGEGRYKDKPHPVALKAAKRRKVDGRW
RLGLTCEGPFAVLDGSYQSNKGKRDKSDKEPNARAQSAGKNLPLILGSSL
SGALRSRAVWLENLRRHRAGAPLLDLADNETPHAVNRLFGRTDFRGLLAI
EALTVTKATEKPFTSVKIDRFSGAPIDNALVTTQAFIGVRAVVTLALEAR
GEARATEADRMLLATLIDDLRDNGLMLGHGTNKGFGWFDVTTEEING
>Rru_A3696 Exodeoxyribonuclease III xth
MARLVESRAIDVLCLQEIKARPDHVPTAALAEMGLVHQALHTMPGYNGVG
IFSRLPLEDSTPFDWCDRVDCRHLRTRVAGFTLHCLYIPAGGDIPDPEEN
PRFRHKLAFFDALTDWFDRTLDPDMPAMVVGDFNVAPLETDVWDHRKMRG
VVSHTPVEVAKLGALQASGPWIDAMRRFVPPEEKLFTWWSYRAKDWRLTN
RGRRLDHIWVTPALVDRLRGLEVMDDTRDWTPPSDHVPVIVHIDPPTKG
>Rru_A0825 putative transposase
MDEVFPTTRHQRCWLHKTGNVLNKAAKSVQPSMKKDLAEIWMSPDRAAAE
KAADVFAAKYGAKYPKAVECLEKGPEAPTGFLRLPSRTLGAFAHDQSH
>Rru_A3210 DNA methylase N-4/N-6
MTDPLRTNRIYQGDSIEVMRSLPSASIDMIFADPPYNMMLGGELLRPDNS
RVDGVDDEWDRFESQRAYAEFTRSWLREARRLLKDNGTIWVIGSYHNIYR
VGAELQDLGFWTLNDVVWRKANPMPNFKGTRFTNAHETLLWCAKSAEARY
TFNYEAMKSLNEGLQMRSDWTLPLCNGKERLKAEDGKKVHPTQKPESLLY
RVILSSTHPGDIILDPFFGTGTTGAVAKLLGRQWIGLERDEAYIAAARQR
IAQVEPIKDLRLLITPSKKSEPRIPFGTVVERGLLAPGSLLCDSQRRWTA
KVRADGTLVATSSHGDHRGSIHQVGAAVQGAPACNGWTFWHIDRPGGAVP
IDVLRQQVRAELEACAL
>Rru_A3316 Phage integrase
MCYTGDMEDVKHPRLTRRGRIYWFRAKVPADLRSHYAPKTEIIYSLKTSD
PREALVRVRIASVKADQEFEVARRIPKEEVRTSLSDDEAERLVAIYYQVR
LEEDEEIRIGGKQEADLYLGVKAQLEALGIGHANYTNEEAVAEYGLSQRE
YQKNQETLEFMEPLYREALSTGNTEIIHDELDDILEANSIKLDRTSSQYR
KLAFSILKATVKVLDVEKRRNSGEPIDTPPEPPPLFKPAVTAVPANSLRL
SEVFERWKVERKPAKRSLMEWDTAIRRFTALYGDKPVESITKAEVVEFKD
SLLQQGKAAATVLKQVGAIKSTLQYAVDNGKLSVNPATGVKVAGKRASEV
RRLPYDAEDLKAIFSSPVFTCGDRPLAGSGEASFWLPLLALFTGARLNEI
GQILVSDVRELDGIHYLDLNTEGEGKSLKNEGSRRKVPLHPEIIRLGFLD
YVRKQGESLGSDSRVFDKLEPNSNGVLTANFSKWWGRYARENGIAKGQKV
FHSFRHSFKDACRESSLPQDIHDALTGHSPNNVGGRYGQGFTVRRLGEEM
AKLSYPGLDLSGLMKP
>Rru_A0834 Protein of unknown function DUF196
MILVTYDVNTVEPGGRRRLRQVAKACQDYGQRVQNSVFEVEVDPARWVAL
KARLEAIIDPALDSLRYYDLGANWQRRVDHVGAKPAVDLHGPLIL
>Rru_A0289 NUDIX hydrolase
MAQTGISDIVYTGARHDRVSTGTLDDKALEALGWRPEARWLVFWRGRIAF
PATGPTPDPTREPEPLSPLLLDGPTVRGLIAGRTTIPPTPADTPPALAEL
VAAGGDGLADLTLAPPAPPPVTGPSHPTLHLGLLDGAALQVIDLSALPER
PPTDAGEAGESDLAPDLRLADGSAPVFRELRGVALAVEDAMAGAMAHAQA
LLNWHASHPLCPRCGAVTRIAAGGRHRHCANPACGADHFPRTDPVVIMLV
EDPEGERCLLARQSRFPAGMYSALAGFVEPGETLEAAVAREVREEAGLDV
GDIRYVASQPWPWPSNLMIGFIARARATALSLDDNELEDARWFTRAEVAA
MGEVGDEGEGFRIPRRDAIARHLVEGWRDRRF
>Rru_A0004 DNA gyrase, B subunit
MTQQAYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAID
EALAGYCDHSEVILNGDGSVTVCDNGRGIPVDIHREEGVSAAEVIMTQLH
AGGKFDQNSYKVSGGLHGVGVSVVNALSDWLDLRIWRDGKEHYVRFEHGE
VVAPLKVVGDCGDRTGTEITFLASPAIFAITTYDYATLEHRLRELAFLNS
GVRLLLTDKRGTEPRTTKFHYDGGIEEFVRYLDKSKTVLHSPPVTAIGER
DGMIVELSLEWTDSYHETVLCFTNNIPQRDGGTHMAGFRGGLTRTLNSYA
QDSGLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRP
VVEAVVVERLGQWLEEHPQEARKIIGKVVEAAAAREAARRARELTRRKGA
LDMASLPGKLADCQNRDPAQSELFIVEGDSAGGSAKQGRDRGYQAILPLR
GKILNVERARFDKMLSSAEIGTLIAALGTGIGKDDFDVGKARYHKIIIMT
DADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIAQPPLYRAKRGNSEQYLK
DDRELEDYLLDTGLDETVYTTAAGVQMAGPDLRALVERARLARNAIAAMG
RKVPWVLLEQAAVAGAFHTEIVNDDARASAAAADVARRIDALESPLERGW
TGTLAAGGGMVFQRTLRGVTETHVIDPQVIHSTEARRLDSMAAALREFYE
QPGRLRIKDGDQIIPGPMTLINAVMAAGRKGIAIQRYKGLGEMNPEQLWE
TTLDPNVRRLLQVKVNQVSDAEDVFSTLMGDIVEPRRDFIQDNALNVQNL
DV
>Rru_A0817 Transposase, mutator type
MDYPLAGENGAGNTRNGYGRKTVMTDTGSLAIDVPRDRQSSFDPQMIAKD
QRRFPGFDEKIVSMYARGMSTREITGHLQELYGIDVSPDLISTVTDAVLD
EIAAWQQRPLDPVYPLVFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKD
VLGLWLEQNEGATFWLRVMIEALNAKLRRAVRVRGHFPSDEAATKLLCLI
LNRSEKEWKTPPREGSMAKAQFAVIFGDRFIRAVGA
>Rru_A2343 Protein of unknown function DUF83
MAPSDTPPSAEDLPSQGELALFAPPATAEDALVPASMVNAWIYCPRLAVL
EWGRGEKARSVDLIAGLRAHQATESGPTPALPDPMVLREDQSLKTRKLSL
SSERLGLTAELDLLDVEEGVVIPVEIKVGKRPSVDEGAYLPERAQVCAQA
LLLREAGYTCLEGALWFAESRERVTVDLTEALVTATLVATSDLRLTVASG
RLPPPLDHSAKCPRCSLLPICLPDEIAWFRKGSIARTPPPPASPALPLYG
QTPGARIGKKDRGGSVCLDRMAAWLSSRPVPCYAAIGMLNTASGASHPSV
ARHADGGASARSFRLPTAFRRPVRRSLPCYAAR