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2024-04-28 15:22:10

Gene list

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COG category: Replication, recombination and repair
Organism: Rhodospirillum rubrum ATCC 11170, ATCC 11170

Number of genes found: 147

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Rhodospirillum rubrum ATCC 11170, ATCC 11170
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Rru_A1553 Histone-like DNA-binding proteinchromosome CDS1833133 276 + 0.637681
NA Rru_A3692 Protein of unknown function UPF0102chromosome CDS4238066 378 - 0.714286
NA Rru_A0455 NUDIX hydrolasechromosome CDS536043 516 + 0.699612
NA Rru_A0653 conserved hypothetical proteinchromosome CDS773723 579 + 0.721934
NA Rru_A2131 hypothetical proteinchromosome CDS2475492 252 - 0.559524
NA Rru_A3471 RecR proteinchromosome CDS3995618 594 - 0.691919
NA Rru_A1741 Phage integrasechromosome CDS2032027 837 + 0.618877
NA Rru_A1745 Single-strand binding proteinchromosome CDS2037494 558 - 0.684588
NA Rru_A0074 Helicase-likechromosome CDS85794 3201 + 0.690097
NA Rru_A1517 transposase of ISBst12-like elementchromosome CDS1790378 717 + 0.65272
NA Rru_A1848 Gram negative topoisomerase IV, subunit Achromosome CDS2146560 2232 - 0.661738
NA Rru_A3036 Helicase c2chromosome CDS3494534 2784 + 0.722701
NA Rru_A0834 Protein of unknown function DUF196chromosome CDS988890 288 + 0.631944
NA Rru_A3473 DNA-directed DNA polymerasechromosome CDS3996560 1980 - 0.705051
NA Rru_A1126 ISBm1, transposase orfAchromosome CDS1327572 429 + 0.617716
NA Rru_A0676 Transposase IS116/IS110/IS902chromosome CDS799105 1032 + 0.618217
NA Rru_A3696 Exodeoxyribonuclease III xthchromosome CDS4242744 750 - 0.668
NA Rru_A0410 DnaB helicasechromosome CDS487197 1524 - 0.658136
NA Rru_A0003 RecF proteinchromosome CDS3170 1128 + 0.748227
NA Rru_A2819 RecA DNA recombination proteinchromosome CDS3252155 1101 - 0.635786
NA Rru_A1744 DNA gyrase, subunit Achromosome CDS2034357 2832 - 0.650424
NA Rru_A2189 TRm3 transposasechromosome CDS2543364 171 - 0.619883
NA Rru_A3611 DNA polymerase III, epsilon subunitchromosome CDS4150517 693 - 0.652237
NA Rru_A3442 Transposase IS116/IS110/IS902chromosome CDS3963697 1032 - 0.620155
NA Rru_A1516 Transposase and inactivated derivatives-likechromosome CDS1789649 468 - 0.626068
NA Rru_A3054 Ribonuclease Hchromosome CDS3517282 501 + 0.658683
NA Rru_A1849 Recombination protein O, RecOchromosome CDS2148828 759 - 0.724638
NA Rru_A3557 conserved hypothetical proteinchromosome CDS4096655 906 + 0.705298
NA Rru_A3310 ISMca6, transposase, OrfBchromosome CDS3815179 459 - 0.62963
NA Rru_A2187 Serine/Threonine protein kinasechromosome CDS2541462 1338 - 0.443199
NA Rru_A3194 SMF proteinchromosome CDS3682974 1125 + 0.707556
NA Rru_A3514 DNA polymerase Achromosome CDS4045237 2775 + 0.665586
NA Rru_A0241 DNA methylase N-4/N-6chromosome CDS295221 2820 - 0.560284
NA Rru_A3530 DNA-directed DNA polymerasechromosome CDS4061767 1266 + 0.692733
NA Rru_A2021 Endonuclease/exonuclease/phosphatasechromosome CDS2333738 741 - 0.605938
NA Rru_A3251 A/G-specific adenine glycosylase MutYchromosome CDS3746569 1080 + 0.699074
NA Rru_A2365 ATP-dependent helicase HrpBchromosome CDS2754881 2583 + 0.730159
NA Rru_A0939 DNA ligase (NAD+)chromosome CDS1118665 2097 - 0.669528
NA Rru_A2660 AAA ATPase, central regionchromosome CDS3088974 1320 - 0.672727
NA Rru_A2186 putative transposasechromosome CDS2541070 276 + 0.594203
NA Rru_A1582 DNA polymerase III, alpha subunitchromosome CDS1861842 3513 + 0.642471
NA Rru_A3799 DNA-formamidopyrimidine glycosylasechromosome CDS4349659 846 + 0.665485
NA Rru_A2718 DEAD/DEAH box helicasechromosome CDS3141659 2400 + 0.67875
NA Rru_A0289 NUDIX hydrolasechromosome CDS354692 1149 - 0.719756
NA Rru_A3757 Excisionase/Xis, DNA-bindingchromosome CDS4309293 177 + 0.587571
NA Rru_A1752 Excinuclease ABC, A subunitchromosome CDS2044331 2853 + 0.643533
NA Rru_A3541 MutS 1 proteinchromosome CDS4073757 2790 - 0.7
NA Rru_A0347 Protein of unknown function DUF48chromosome CDS419071 882 + 0.650794
NA Rru_A1573 Methyladenine glycosylasechromosome CDS1854518 534 + 0.655431
NA Rru_A0674 Phage integrasechromosome CDS795904 1161 + 0.59087
NA Rru_A3358 Methylated-DNA--(protein)-cysteineS-methyltransf erasechromosome CDS3871151 609 + 0.683087
NA Rru_A0292 Integration host factor, beta subunitchromosome CDS357574 303 - 0.60396
NA Rru_A0825 putative transposasechromosome CDS980281 297 + 0.59596
NA Rru_A2800 hypothetical proteinchromosome CDS3233551 453 + 0.686534
NA Rru_A2903 Deoxyribodipyrimidine photolyasechromosome CDS3345275 1437 + 0.691023
NA Rru_A2617 Exonuclease VII, small subunitchromosome CDS3045636 369 + 0.661247
NA Rru_A1668 Integration host factor, alpha subunitchromosome CDS1958809 318 + 0.597484
NA Rru_A0833 Protein of unknown function DUF48chromosome CDS987840 1035 + 0.626087
NA Rru_A1726 Transcription-repair coupling factorchromosome CDS2018784 3534 - 0.666384
NA Rru_A1700 TatD-related deoxyribonucleasechromosome CDS1989989 813 - 0.660517
NA Rru_A1087 Crossover junction endodeoxyribonuclease RuvCchromosome CDS1277461 510 + 0.692157
NA Rru_A0818 hypothetical proteinchromosome CDS973938 336 - 0.58631
NA Rru_A2946 DNA mismatch repair proteinchromosome CDS3394939 1890 - 0.711111
NA Rru_A1728 ATP-dependent DNA helicase RecGchromosome CDS2022753 2112 + 0.701231
NA Rru_A0153 Endonuclease III/Nthchromosome CDS177869 714 - 0.669468
NA Rru_A0214 MutT/nudix family proteinchromosome CDS266139 879 + 0.650739
NA Rru_A1536 UvrD/REP helicasechromosome CDS1809079 2307 + 0.674902
NA Rru_A1915 DEAD/DEAH box helicasechromosome CDS2219219 1182 + 0.65736
NA Rru_A2488 Putative RNA methylasechromosome CDS2892239 1815 - 0.715151
NA Rru_A0178 CRISPR-associated protein Cas2, putativechromosome CDS211268 309 - 0.588997
NA Rru_A3738 Phage integrasechromosome CDS4287772 987 - 0.721378
NA Rru_A2343 Protein of unknown function DUF83chromosome CDS2716563 1002 + 0.653693
NA Rru_A0208 SNF2 helicase-related proteinchromosome CDS258034 3630 + 0.706061
NA Rru_A3621 Methylated-DNA-(protein)-cysteineS-methyltransfe rasechromosome CDS4160269 498 - 0.722892
NA Rru_A1702 DNA-directed DNA polymerasechromosome CDS1992525 1125 - 0.715556
NA Rru_A0832 Protein of unknown function DUF83chromosome CDS987157 687 + 0.659389
NA Rru_A0451 conserved hypothetical proteinchromosome CDS529180 345 + 0.666667
NA Rru_A2521 DNA helicase, putativechromosome CDS2932302 5094 + 0.664115
NA Rru_A0354 Phage integrasechromosome CDS427472 1209 - 0.607113
NA Rru_A3312 Resolvase-likechromosome CDS3816901 720 - 0.573611
NA Rru_A1280 HPr kinasechromosome CDS1508300 972 - 0.638889
NA Rru_A0242 Type III restriction enzyme, res subunitchromosome CDS298055 3045 - 0.584893
NA Rru_A0872 hypothetical proteinchromosome CDS1042948 627 - 0.69697
NA Rru_A0179 Protein of unknown function DUF83chromosome CDS211593 1743 - 0.646586
NA Rru_A2163 conserved hypothetical protein RP631chromosome CDS2512365 687 - 0.714702
NA Rru_A3435 conserved hypothetical proteinchromosome CDS3955832 3057 - 0.713772
NA Rru_A1962 hypothetical proteinchromosome CDS2269776 297 + 0.626263
NA Rru_A0450 Uncharacterized protein predicted to be involved in DNA repair-likechromosome CDS528562 522 + 0.666667
NA Rru_A0732 DNA repair protein RadCchromosome CDS859390 732 - 0.677596
NA Rru_A0185 hypothetical proteinchromosome CDS222076 1959 - 0.643696
NA Rru_A1610 conserved hypothetical proteinchromosome CDS1904172 783 + 0.689655
NA Rru_A1133 Excinuclease ABC, B subunitchromosome CDS1335113 2202 - 0.653043
NA Rru_A0169 Protein of unknown function DUF48chromosome CDS200286 942 - 0.64862
NA Rru_A1128 Integrase, catalytic regionchromosome CDS1329614 843 + 0.586002
NA Rru_A3202 DNA topoisomerasechromosome CDS3689610 2748 + 0.656477
NA Rru_A0004 DNA gyrase, B subunitchromosome CDS4362 2409 + 0.649647
NA Rru_A2904 transposasechromosome CDS3348294 408 - 0.647059
NA Rru_A0089 ATP-dependent DNA helicase RecQchromosome CDS102652 1890 + 0.686243
NA Rru_A2408 RecJ exonucleasechromosome CDS2806942 1821 - 0.691927
NA Rru_A2200 DNA polymerase III chi subunit, HolCchromosome CDS2554709 483 - 0.658385
NA Rru_A2710 Gram negative topoisomerase IV, subunit Bchromosome CDS3131976 1998 + 0.661662
NA Rru_A3209 Ribonuclease Hchromosome CDS3699820 657 + 0.719939
NA Rru_A1860 Uracil-DNA glycosylase superfamilychromosome CDS2158112 645 + 0.697674
NA Rru_A1149 Protein of unknown function DUF324chromosome CDS1357777 1344 - 0.654018
NA Rru_A1525 Nucleoside diphosphate pyrophosphatasechromosome CDS1795332 633 - 0.680885
NA Rru_A3434 UvrD/REP helicasechromosome CDS3952272 3564 - 0.703143
NA Rru_A0159 Exodeoxyribonuclease VIIchromosome CDS185135 1614 - 0.71995
NA Rru_A3035 nuclease (SNase-like)chromosome CDS3494054 432 + 0.659722
NA Rru_A0831 CRISPR-associated protein TM1801chromosome CDS986183 954 + 0.610063
NA Rru_A2566 hypothetical proteinchromosome CDS2986366 255 - 0.545098
NA Rru_A1088 DNA recombination protein RuvAchromosome CDS1277967 639 + 0.716745
NA Rru_A1784 exodeoxyribonuclease III xthchromosome CDS2075264 801 + 0.637953
NA Rru_A1222 Primosomal protein nchromosome CDS1441961 2436 + 0.711412
NA Rru_A0633 Exonucleasechromosome CDS753514 630 - 0.668254
NA Rru_A0001 chromosomal replication initiator protein, DnaAchromosome CDS228 1530 + 0.655556
NA Rru_A3178 Holliday junction resolvase YqgFchromosome CDS3670243 486 + 0.6893
NA Rru_A0352 RepAchromosome CDS425278 831 - 0.610108
NA Rru_A1271 Metallophosphoesterasechromosome CDS1494186 1236 - 0.694984
NA Rru_A1519 hypothetical proteinchromosome CDS1791529 201 + 0.656716
NA Rru_A1220 Phage integrasechromosome CDS1439943 993 - 0.70292
NA Rru_A1515 Transposase, IS4chromosome CDS1789275 378 - 0.640212
NA Rru_A0817 Transposase, mutator typechromosome CDS973250 711 + 0.631505
NA Rru_A1730 nucleasechromosome CDS2025767 528 + 0.681818
NA Rru_A2190 TRm3 transposasechromosome CDS2543686 279 - 0.637993
NA Rru_A0002 DNA-directed DNA polymerasechromosome CDS1992 1119 + 0.646113
NA Rru_A1127 ISBm1, transposase orfBchromosome CDS1328024 309 + 0.585761
NA Rru_A3316 Phage integrasechromosome CDS3824154 1701 - 0.513228
NA Rru_A0367 NUDIX hydrolasechromosome CDS441764 732 - 0.688525
NA Rru_A1386 DEAD/DEAH box helicasechromosome CDS1636167 2034 + 0.702065
NA Rru_A1230 NUDIX hydrolasechromosome CDS1452170 498 - 0.684739
NA Rru_A0266 Phage SPO1 DNA polymerase-related proteinchromosome CDS330933 948 + 0.707806
NA Rru_A3357 Transcriptional Regulator, AraC familychromosome CDS3869691 1461 + 0.744695
NA Rru_A3146 hypothetical proteinchromosome CDS3630975 480 - 0.63125
NA Rru_A2278 Transposase IS66chromosome CDS2637634 1350 + 0.64963
NA Rru_A3349 transcription activator, effector bindingchromosome CDS3863698 483 + 0.639752
NA Rru_A3644 Uracil-DNA glycosylase superfamilychromosome CDS4184903 600 - 0.736667
NA Rru_A1153 Protein of unknown function DUF196chromosome CDS1364648 375 - 0.576
NA Rru_A0393 NUDIX hydrolasechromosome CDS469268 456 - 0.701754
NA Rru_A3629 DNA polymerase III, delta subunitchromosome CDS4169445 1029 - 0.705539
NA Rru_A0940 DNA repair protein RecNchromosome CDS1120804 1734 - 0.7203
NA Rru_A1107 hypothetical proteinchromosome CDS1300534 2034 + 0.654376
NA Rru_A2220 Excinuclease ABC, C subunitchromosome CDS2578520 1920 + 0.659375
NA Rru_A3210 DNA methylase N-4/N-6chromosome CDS3700630 1104 + 0.641304
NA Rru_A2883 DNA primasechromosome CDS3324658 1863 - 0.685454
NA Rru_A1089 Holliday junction DNA helicase RuvBchromosome CDS1278609 1053 + 0.683761
NA Rru_A3485 hypothetical proteinchromosome CDS4010182 1446 - 0.616874
NA Rru_A1154 Protein of unknown function DUF48chromosome CDS1365051 1116 - 0.675627