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2024-04-29 08:28:38

Gene list

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COG category: Replication, recombination and repair
Organism: Salinibacter ruber DSM 13855, DSM 13855; M31

Number of genes found: 161

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salinibacter ruber DSM 13855, DSM 13855; M31
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SRU_0715 exonuclease, putativechromosome CDS923873 711 + 0.690577
NA SRU_2484 ISSru3, transposase insAchromosome CDS3087233 279 - 0.541219
NA SRU_0718 probable ATP-dependent DNA helicasechromosome CDS927059 2568 + 0.701713
NA SRU_1506 tyrosine recombinase xerCchromosome CDS1875379 936 + 0.647436
NA SRU_0059 hypothetical proteinchromosome CDS56738 480 + 0.702083
NA SRU_0196 IS605 family transposasechromosome CDS271623 1215 - 0.555556
NA SRU_0988 ATPase, AAA family proteinchromosome CDS1261639 1371 + 0.671043
NA SRU_0188 IS110 family transposasechromosome CDS257015 1011 + 0.58457
NA SRU_2330 deoxyribodipyrimidine photolyase, putativechromosome CDS2904291 1614 - 0.694548
NA SRU_2179 6-O-methylguanine DNA methyltransferase, DNA binding domain subfamilychromosome CDS2700112 333 - 0.705706
NA SRU_1441 exonuclease familychromosome CDS1792197 1617 + 0.689549
NA SRU_0713 ISSru3, transposase insBchromosome CDS922494 477 + 0.595388
NA SRU_2141 ISSru2, transposase insAchromosome CDS2647549 279 + 0.541219
NA SRU_0247 hypothetical proteinchromosome CDS328638 630 + 0.674603
NA SRU_2183 putative 6-O-methylguanine DNA methyltransferase family proteinchromosome CDS2708826 387 - 0.70801
NA SRU_0887 integron integrase subfamilychromosome CDS1134702 957 + 0.661442
NA SRU_1397 ISSru3, transposase insAchromosome CDS1749328 279 + 0.541219
NA SRU_0046 ATP-dependent RNA helicasechromosome CDS41983 1437 + 0.658316
NA SRU_2483 ISSru3, transposase insBchromosome CDS3086793 477 - 0.595388
NA SRU_0652 MutS2 family proteinchromosome CDS849703 2460 + 0.714228
NA SRU_0026 putative replicative DNA helicase, intein-containingchromosome CDS23412 2553 - 0.655699
NA SRU_1575 hypothetical proteinchromosome CDS1957677 582 + 0.678694
NA SRU_2078 conserved hypothetical protein TIGR00095chromosome CDS2572552 615 - 0.671545
NA SRU_0732 ISSru3, transposase insAchromosome CDS945504 279 - 0.541219
NA SRU_p0002 umuC proteinpSR35 CDS1500 1299 + 0.638953
NA SRU_0305 protein umuCchromosome CDS407473 1281 + 0.713505
NA SRU_0027 uracil-DNA glycosylase, family 4chromosome CDS26151 864 - 0.655093
NA SRU_1806 probable ATP-dependent DNA helicasechromosome CDS2232914 3345 - 0.71151
NA SRU_1105 transposase, degeneratechromosome CDS1392772 582 + 0.613402
NA SRU_2442 hypothetical proteinchromosome CDS3050958 1944 - 0.683128
NA SRU_2115 hydrolase, NUDIX family proteinchromosome CDS2615393 630 - 0.680952
NA SRU_1673 ATP-dependent DNA helicase, RecQ familychromosome CDS2075466 1950 - 0.706154
NA SRU_1220 Protein of unknown function (DUF1232) familychromosome CDS1536925 678 + 0.640118
NA SRU_1484 type II DNA topoisomerase, B subunitchromosome CDS1850303 1932 + 0.648551
NA SRU_2557 DNA polymerase III, subunits gamma and tau, putativechromosome CDS3178539 2187 - 0.704618
NA SRU_0626 Phage integrase, N-terminal SAM-like domain proteinchromosome CDS824475 2064 - 0.48062
NA SRU_1974 hydrolase, NUDIX family proteinchromosome CDS2441539 696 + 0.699713
NA SRU_2007 Ser/Thr protein phosphatase family proteinchromosome CDS2482774 1308 - 0.730122
NA SRU_2013 ISSru2, transposase insAchromosome CDS2491836 279 + 0.541219
NA SRU_1995 putative DNA polymerase IIchromosome CDS2464166 3489 + 0.6274
NA SRU_0803 site-specific recombinase, phage integrase familychromosome CDS1022104 894 - 0.655481
NA SRU_0200 IS605 family transposasechromosome CDS274634 1260 + 0.557143
NA SRU_0595 Phage integrase family proteinchromosome CDS782822 1404 + 0.626068
NA SRU_2395 IS605 family transposasechromosome CDS2985809 1278 + 0.56964
NA SRU_2552 hypothetical proteinchromosome CDS3166684 363 + 0.716253
NA SRU_1377 DNA-binding protein HUchromosome CDS1728439 303 + 0.636964
NA SRU_0609 IS5 family transposasechromosome CDS800022 768 - 0.580729
NA SRU_0071 integrase/recombinasechromosome CDS77736 1356 - 0.629056
NA SRU_0351 putative DNA helicasechromosome CDS472071 2124 - 0.70951
NA SRU_0712 ISSru3, transposase insAchromosome CDS922252 279 + 0.541219
NA SRU_1534 hypothetical proteinchromosome CDS1911109 2181 + 0.664374
NA SRU_0191 IS605 family transposase orfAchromosome CDS266473 399 + 0.526316
NA SRU_1807 hypothetical proteinchromosome CDS2236388 3222 - 0.704221
NA SRU_2336 ISSru3, transposase insBchromosome CDS2910690 477 + 0.595388
NA SRU_0641 IS605 family transposase orfBchromosome CDS836835 1134 + 0.557319
NA SRU_1916 OB-fold nucleic acid binding domain proteinchromosome CDS2364216 3753 - 0.64615
NA SRU_p0031 hypothetical proteinpSR35 CDS29658 1371 - 0.642597
NA SRU_1064 conserved hypothetical protein TIGR00250chromosome CDS1338851 432 + 0.703704
NA SRU_2764 Helicase conserved C-terminal domain proteinchromosome CDS3418701 1833 - 0.675396
NA SRU_0184 ISSru2, transposase insAchromosome CDS253858 279 + 0.541219
NA SRU_0861 putative membrane proteinchromosome CDS1103901 1830 + 0.70765
NA SRU_0640 IS605 family transposase orfAchromosome CDS836430 402 + 0.534826
NA SRU_0192 IS605 family transposase orfBchromosome CDS266875 1191 + 0.572628
NA SRU_2772 IS110 family transposasechromosome CDS3430685 1005 + 0.593035
NA SRU_1455 protein kinase domainchromosome CDS1810998 1950 - 0.717949
NA SRU_2315 DNA helicase IIchromosome CDS2883011 3255 + 0.722888
NA SRU_0109 ISSru3, transposase insBchromosome CDS140430 477 + 0.595388
NA SRU_1398 ISSru3, transposase insBchromosome CDS1749570 477 + 0.595388
NA SRU_2024 ISSru3, transposase insBchromosome CDS2504359 477 + 0.595388
NA SRU_2820 THUMP domain/methyltransferase domain proteinchromosome CDS3482183 1110 + 0.692793
NA SRU_0108 ISSru3, transposase insAchromosome CDS140188 279 + 0.541219
NA SRU_1299 hydrolase, TatD familychromosome CDS1638051 789 + 0.629911
NA SRU_0538 ATP-dependent DNA helicase pcrAchromosome CDS713066 2361 + 0.674291
NA SRU_1483 type II DNA topoisomerase, A subunitchromosome CDS1847913 2334 + 0.652956
NA SRU_2335 ISSru3, transposase insAchromosome CDS2910448 279 + 0.541219
NA SRU_2238 hydrolase, NUDIX family proteinchromosome CDS2775561 921 - 0.701411
NA SRU_0857 putative DNA polymerase III, delta' subunitchromosome CDS1099984 1188 + 0.66835
NA SRU_0236 transposasechromosome CDS313832 1227 + 0.562347
NA SRU_2245 GIY-YIG catalytic domain, putativechromosome CDS2783283 303 + 0.633663
NA SRU_0731 ISSru3, transposase insBchromosome CDS945064 477 - 0.595388
NA SRU_1808 protein parBchromosome CDS2239616 546 - 0.721612
NA SRU_2610 hypothetical proteinchromosome CDS3238342 306 - 0.718954
NA SRU_0219 IS605 family transposasechromosome CDS287207 1332 + 0.557808
NA SRU_0632 IS1 family transposase insAchromosome CDS831883 279 + 0.53405
NA SRU_0781 MutT/nudix family proteinchromosome CDS992609 438 + 0.705479
NA SRU_p0026 nuclease, putativepSR35 CDS24283 669 - 0.648729
NA SRU_0919 putative deoxyribonucleasechromosome CDS1176005 1266 + 0.671406
NA SRU_1888 hydrolase, NUDIX family proteinchromosome CDS2332260 615 + 0.691057
NA SRU_1109 ribonuclease Hchromosome CDS1397735 924 - 0.564935
NA SRU_2706 ISSru3, transposase insAchromosome CDS3343843 279 - 0.541219
NA SRU_1127 IS5 family transposasechromosome CDS1419624 396 + 0.593434
NA SRU_0950 exonuclease, putativechromosome CDS1216622 750 - 0.698667
NA SRU_2010 putative transposase, orfBchromosome CDS2489216 522 - 0.55364
NA SRU_2455 ISSru3, transposase insAchromosome CDS3065333 279 + 0.541219
NA SRU_p0013 hypothetical proteinpSR35 CDS14839 954 - 0.633124
NA SRU_1505 Phage integrase, N-terminal SAM-like domain proteinchromosome CDS1873808 909 + 0.613861
NA SRU_0687 nuclease SbcCD, D subunit subfamily, putativechromosome CDS894181 1362 + 0.692364
NA SRU_1088 Phage integrase family proteinchromosome CDS1361835 1248 + 0.550481
NA SRU_1822 conserved hypothetical protein TIGR00252chromosome CDS2255142 369 - 0.655827
NA SRU_2267 ISSru2, transposase insAchromosome CDS2816729 279 + 0.541219
NA SRU_2023 ISSru3, transposase insAchromosome CDS2504117 279 + 0.541219
NA SRU_1539 putative DNA polymerase IVchromosome CDS1916857 1122 - 0.648841
NA SRU_0610 IS256 family transposase, truncatedchromosome CDS800947 468 + 0.559829
NA SRU_1868 exonuclease SbcC, putativechromosome CDS2309553 3060 - 0.685621
NA SRU_p0005 ISSru1, transposase orfBpSR35 CDS7538 417 - 0.618705
NA SRU_1876 hypothetical proteinchromosome CDS2318546 522 - 0.704981
NA SRU_2456 ISSru3, transposase insBchromosome CDS3065575 477 + 0.595388
NA SRU_2704 ISSru3, transposase insBchromosome CDS3343403 477 - 0.595388
NA SRU_0226 IS110 family transposasechromosome CDS296362 957 - 0.583072
NA SRU_p0011 site-specific recombinase, phage integrase family, truncationpSR35 CDS11163 576 - 0.604167
NA SRU_1545 DNA-3-methyladenine glycosylasechromosome CDS1926298 621 - 0.697262
dnaA SRU_0001 chromosomal replication initiator protein DnaAchromosome CDS2 1575 + 0.64127
dnaA SRU_1369 chromosomal replication initiator protein DnaAchromosome CDS1718032 1695 - 0.670796
dnaE SRU_0979 DNA polymerase III, alpha subunitchromosome CDS1247212 3501 - 0.649529
dnaG SRU_0970 DNA primasechromosome CDS1236378 1968 + 0.66311
dnaN SRU_0002 DNA polymerase III, beta subunitchromosome CDS1709 1134 + 0.634039
dprA SRU_1187 DNA processing protein DprAchromosome CDS1498326 1167 + 0.696658
gyrA SRU_2199 DNA gyrase, A subunitchromosome CDS2724446 2733 + 0.678741
gyrB SRU_2408 DNA gyrase, B subunitchromosome CDS3003154 1959 - 0.665646
holA SRU_0498 DNA polymerase III, delta subunitchromosome CDS672803 1044 + 0.658046
hrpB SRU_2747 ATP-dependent helicase HrpBchromosome CDS3398905 2538 - 0.723798
hup SRU_1063 probable DNA-binding protein HUchromosome CDS1338399 381 + 0.648294
ligA SRU_0888 DNA ligase, NAD-dependentchromosome CDS1135781 2073 - 0.703811
mfd SRU_0063 transcription-repair coupling factorchromosome CDS61566 3429 - 0.673083
mutL SRU_1712 DNA mismatch repair protein MutLchromosome CDS2121575 1944 - 0.702675
mutM SRU_0462 formamidopyrimidine-DNA glycosylasechromosome CDS618307 798 + 0.704261
mutS SRU_1606 DNA mismatch repair protein MutSchromosome CDS1997723 2727 - 0.6718
mutY SRU_2119 A/G-specific adenine glycosylasechromosome CDS2619971 1065 + 0.682629
nfi SRU_2800 endonuclease Vchromosome CDS3457796 669 - 0.715994
nth SRU_2356 endonuclease IIIchromosome CDS2931905 975 - 0.65641
phrB SRU_1083 deoxyribodipyrimidine photolyasechromosome CDS1352336 1392 + 0.663793
phrB SRU_1179 deoxyribodipyrimidine photolyasechromosome CDS1488328 1452 - 0.644628
phrB SRU_1754 deoxyribodipyrimidine photolyasechromosome CDS2164382 1389 - 0.652268
polA SRU_1635 DNA polymerase Ichromosome CDS2031404 2781 - 0.658396
priA SRU_2745 primosomal protein N'chromosome CDS3395529 2478 - 0.717918
radC SRU_2338 DNA repair protein RadCchromosome CDS2911617 702 - 0.688034
recA SRU_1531 recA proteinchromosome CDS1907949 1062 - 0.629002
recF SRU_0067 DNA replication and repair protein RecFchromosome CDS71532 1239 + 0.705408
recG SRU_0269 ATP-dependent DNA helicase RecGchromosome CDS361774 2103 - 0.685687
recJ SRU_2233 single-stranded-DNA-specific exonuclease RecJchromosome CDS2766776 1755 - 0.690028
recN SRU_0800 DNA repair protein RecNchromosome CDS1015436 1719 - 0.672484
recO SRU_1176 DNA repair protein RecOchromosome CDS1485885 783 + 0.673052
recQ SRU_0299 ATP-dependent DNA helicase RecQchromosome CDS395334 1824 + 0.699561
recR SRU_2555 recombination protein RecRchromosome CDS3177216 714 - 0.668067
repB SRU_p0001 initiator replication protein RepBpSR35 CDS1 1011 + 0.523244
rnhA SRU_1185 RNase Hchromosome CDS1496687 585 - 0.639316
rnhB SRU_2372 ribonuclease HIIchromosome CDS2949482 603 - 0.68325
ruvA SRU_0458 Holliday junction DNA helicase RuvAchromosome CDS615198 609 + 0.686371
ruvB SRU_1146 Holliday junction DNA helicase RuvBchromosome CDS1441721 1035 - 0.657971
ruvC SRU_2668 crossover junction endodeoxyribonuclease RuvCchromosome CDS3307074 540 + 0.666667
ssb SRU_0523 single-strand binding proteinchromosome CDS697955 507 - 0.633136
ssb SRU_0716 single-strand binding proteinchromosome CDS924748 513 + 0.668616
topA SRU_1118 DNA topoisomerase Ichromosome CDS1407572 2589 + 0.674778
uvrA SRU_2387 excinuclease ABC, A subunitchromosome CDS2971341 3051 - 0.681088
uvrA SRU_0449 excinuclease ABC, A subunitchromosome CDS601430 2946 - 0.68296
uvrB SRU_1160 excinuclease ABC, B subunitchromosome CDS1459842 2076 + 0.639692
uvrC SRU_1580 excinuclease ABC, C subunitchromosome CDS1962016 1902 + 0.650368
uvrd SRU_0513 ATP-dependent DNA helicasechromosome CDS685564 2139 - 0.679289
xerD SRU_p0008 tyrosine recombinase XerDpSR35 CDS9341 141 - 0.574468
xseA SRU_0738 exodeoxyribonuclease VII, large subunitchromosome CDS950148 1197 - 0.721804
xseB SRU_0735 exodeoxyribonuclease VII, small subunitchromosome CDS947618 270 - 0.62963