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# Pseudomonas putida KT2440, KT2440

>PP4812 DNA-3-methyladenine glycosylase, putative
MPALPDSFFDRDAQTLAKALLGKVIRHRHGDLWLAARIIETEAYYLSDKG
SHASLGYTEKRKALFLDGGHIYMYYARGGDSLNFSAHGPGNAVLIKSAYP
WQDTLSGPDSLAQMQLNNPDASGNIRPQERLCAGQTLLCRALGLKVPHWD
AQRFDAERLYVEDCGNAVPRVIQAARLGIPHGRDEHLPYRFVDAEYARFC
TRNPLRRGQVEGRDFFILEQGS
>PP3260 DNA ligase, ATP-dependent, putative
MAKPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFR
LELDGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGA
GDVIVWDRGIWEPEGDAHEAYAKGKLRFRLLGEKLGGVWNLFRTHLAGKK
EQWMLVKSHDAQACSETEYSIVEALPDSVLSERTLVPCKSAAKKATAPRS
SRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFDGYRILARIEG
QDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQLLEHNHC
DVIKYSADFDEPVQSLLDSACRLKLEGLIGKRVDSVYSGRRSPDWIKLKC
KQRQEFVIVGYTDPKGSRSGFGALLLALHDNDSGQLRYAGKVGTGFNATT
LASIHARLKPLEIARPALPSPPAGAEARGVHWLRPQLLAEVAFAQMTRDG
IVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRNKQAKASENLGELRLTH
PDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLYIPNVLSYEKAEAGQAAMVINRADTLLGAVQMNMLELHTWNA
TDKDFDKPDRFVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSG
GKGIHVVVPLTRRAGWDEVKDFSHAIVNYLAKLFPERLSAVSGPKNRVGR
IFIDYLRNGKGATTACAYSLRARDGLPVSVPIWREELAQIKAANQWNITN
LHEHLAEVDDPWADMGKVRQSITARMRKQLGLE
>PP1921 hypothetical protein
MTSYKGKRLPVISDSTMFEKFALDLWGAQHPDAKTTLYGRNGQEQNGVDV
IVRTGNRLIALQCKAVGKLDQKTIDAEVNRAKKFLPEISDLIIVTTAPHD
AKLVSYAETLTRQHKQLNFFSVFYHGWDDLLRILEDHQKVARKHFPEFYI
STEKGAEPPLSALRLPVDRELNILLTDEELALFCSEASWEMRNNPAALLA
VEHADEQHAISMIAEIEAVEVLDAGARQSRSAFREYLAWLSPKIRRAEVA
VRLLLTDDVVRAPWLLGGCWPQTAATMRRLIPEVIAGAKSHPDRLPLKIG
VPAHPKLVGYIDIEAEDKAAFKDQCKSYDPFYFDAGVPDLGTDLGLKYAL
PAGIAALVRYSTAHGVSIEDLQRDKTNSIYFWGLYAA
>PP3680 hypothetical protein
MPPPHHYPRESVRAIRRNRKESHHMKLCSLRISGFQSFGQDITDITFDGV
TYLLGPNGAGKTATLQALARMFGFEPGLRRLRRSDFHVPLNEQEVPAQRS
LWIEADFTFDETLDDAEDDTVPPFFTQMTLQTADGVPRIRYRLEGILHPD
GEVEERLHYVTRMDEHGQPTTLKPVAKRERDEIHVHYLPARRDPADHIAF
GASALLGRLLRAVNWSDDRDSIKQLTEQITECLSENESIKTLSAGLSGAW
QRLHKGDFFANPSLTFANSEIEAILRHLSISFTPGHGESNVDYARLSDGQ
KSMLYLSLVLTSLTIGREVRSGQNTSFDPLKLKPAAYTILAVEEPENSLS
PHYLGRIVSSLKSSVGVDAQALIATQAPSMLRRVEPDQIRYLRLNSKRET
DVSTIVLPDKHSDAYKFVREAVQAFPELYFARLVVLGEGDSEEIVLPRIL
QAKGAPVDEYAVAIAPLGGRHVNHFWRLLNALGTPHMTLLDLDVGRHQGG
WGRVNYVRTQLDVFDPTRSIPDHWTRHSWDDAERPIRTHHWFDNGNETQS
SLFQELESRDVFFSDPLDLDFAMLKAFPDAFGAELSAPTPHDHVTVLGKS
HFNPGQYNAEEQQLFAAYHKLFKLSSKPAAHLDALGNLTDTELLASLPPS
LNRLADRVKAKLEESPE
>PP3965 ISPpu14, transposase Orf2
MIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRM
KVLVHDGVGVWLAARRLNQGKFHWPGIRHGCEVELDSEQLQALVLGLPWQ
RVGAGGVISML
>PP4442 ISPpu14, transposase Orf2
MIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRM
KVLVHDGVGVWLAARRLNQGKFHWPGIRHGSEVELDSEQLQALVLGLPWL
RVGAGGVISML
>PP5176 hypothetical protein
MYQYLPYPETIRHRPSPFQPLPFTGRLTFKEDQNAVSRMPPIAPWALLRA
RQALQLTTITHQRKPLFRDFHHARLVVKHLRASDDIQDCQSLAWVVMPDH
LHWLIELKEVTLGTLMRKFKSRTAIALRKAGVGHKPIWQPGYQDHALRQE
ECVVHVARYIVANPLRAGLVRSIRDYPHWDAVWL
>PP3381 ISPpu9, transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLL
KMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQT
LNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAAL
EQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVN
RAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFEARSQDRQVRALLRKARKLGYQLVAA
>PP4444 transposase family protein
MRWADAYKQVTEKGKPVADVAQRLGMSVHSLYAWIKLYSKPQEQRQQDDD
QQAELRKLRAELKRVTEERDILKKAAAYFAKECG
>PP3868 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPSSGQKPRVTPDSAKVSTASVTWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGITVADLAGYVKQYWPTL
KARLLAGEYHPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVEIDLEKFFDRVNH
DILMACIERRVKDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP1937 helicase, putative
MPLNLGERTVHSVVDRDLCNEWGSLIVTGYSGLEQLIQLITGRGVGRTPM
RIILGSDPVTVENPKINLGRYDFSEEMREYWLKRGISLALCGQVLHCIEL
IRAGHVRIRYPTGYRRLHAKMYCSAGAVTLGSSNYTGPGLHTQHEANVRF
TSGERARFVETNLLAECFWSLGRNAEDAFIELLEQLLKFVTWQEALARAC
GELLESDWAKSYLDSLFEADPLNLWPSQRQGIAQALYLLDTVGAVLVADA
TGSGKTRMGAHLIRTIHDRNWSLARARKSSMLLICPPLVRKNWDWETAKC
GYNIAITSHGLLSRLNPEDESSLAIHLSSAQILAVDEAHNFLNQGSRRTR
TLKFNLADQVVLFTATPINRSIADLLRLIDILGADNFDDDVLAVFERLTG
FGHGGAETRDDDIPQLQAGIGSFVVRRTKAQFNAMVDLDPEAYRLPGGRV
CRYPNQLSECYSLDEPNQDKRLAREIRALALQFKGMSRFQTALALPDFFK
ENGVTPERYLRFRLKAARSLALYQVMSSLRSSRLALYRHIEGEGAAWSRM
GLNSEKMKGDHQTGNMLERTAMLAGKIPENHLGVELPRWLSDSAEHRRAC
EDECLLYTAILERLERMSGHREKRKVQFLMELLDRHDHILAFDHYPITLR
YFQHLLDQKRSDHRPFSVLLGIGGNRRSHEHIQSLLNPNAKSEGKLIVLC
SEALSESVNLQRASTLVHLDMPSVVRIAEQRVGRIDRMDSCHAEIECWWP
KDSREFALRSDETFVQRIFQVESLIGGNLQLPDDICGNHDAQIVTWEHFD
KLVRERAARNWDGIEDAFAPIRGLASGPEALISPDVYELYRNETNKVMSR
VSVVPSSEPWVFLCLAGENARAPRWIFLSGSDDQPVINLREIATQLRARL
SDDLQNLNPTRAAMGMLQSFLARLGEMEKMLLPRRKQRAIAQFEWAITLW
SSSPGWIGSEEQAEQVKQLLDLFSRKGEELTPDWGQLAGLWLELVKPRSA
ELLQKKGRRASMTRLRDLEPSLRSAPIDLDVILKKIQGVDLRRRWEERIV
ACILGYGQSAEE
>PP2495 conserved hypothetical protein
MKATSLNRSTSKIRPALRLVSTKELPREDWLQIRKQGIGSSDAAAAVGLN
PYKSQLELWLEKTSRDAGMPKADPQDEESPMYWGNVLEPIVAWHYSKRTK
NKVRRINAVLQHPDPELPWMLANIDREVIGADDVQILECKTAGINGARLW
KEGVPEYVQLQVMHQLAVTGKQAADVAVLLGGQTLEIHRIERDEQMIARL
IELERQFWHYVETDTPPPADGTASAESALRCLYPEDNGQVVDFSQHAGLS
AAYIELKAVRQSIAEREKREAELKQMLQQAMGDASRAEFSSGYVSWRKAK
DSIGLDVAQLLKDKPYLQAKYPLLKPGARRFLVG
>PP3987 site-specific recombinase, phage integrase family
MERLQRIEIPLGTDLDVAKIEWAKLDRKSVPKITRLLGDVFNRYERDVIP
GKMPRTQKDNLLSLRQLRAAFSDAPIDAITPQIVAQYRDKRSGKVRANRE
ISLLSHIYNMAREWGITDRENPAAGVRKNKERPRDFYAGPEIWNAVYDRA
ASELRDAMDLAYLTGQRPADVLTMRAADCDDKYLQVAQGKTSKKLRIELR
SGEQVNHLGLLIERLLAQRKERGVCNPYLITTQDGRAVTASMLRLRFDDA
RKTAIRHALVGEDKVLAERIRQFQFRDIRPKAASEIGDLGHASRLLGHTD
KRITQTVYRRVGEIVQPTR
>PP4446 group II intron-encoding maturase, putative
MRYRATPSRRVYIPKADGRQRPLGIASLEDKIVQQAVVTVLNAIYEEDFL
GFSYGFRPGRSQHDALDALTVALKGQKVNWILDADITSFFDEIDHEWMLM
FLGHRIADRRLLGLICKWLQAGVMEDGRRVVATKGTPQGAVISPLLANIY
LHYVLDLWARQWRQRHARGDVIIVRYADDSVVGFRTKVQAQQFLVQLQER
LARFGLSLNASKTRLIEFGRFAARNRRKRGLGKPETFDFLGFTHCCSTNR
SGGFQILRLTVKKRMRAMLLAMRDELKHRRHEPIWVQGQWLTRVVSGYFN
YHAVPGNLTRLGGFRSAVCRLWRQALKRRSQRNRLQWSRYGRLADLYIPR
PRNAHPYPEDRFASHTRGRSRMR
>PP4025 ISPpu15, transposase Orf2
MISVPDNLPDDPAALKLLLAQLLAERTVDKGQIVDLKEQVKLLRDRLFNR
KSEQTVESNTPQLALFNEPESQWVPTADDADEEVVAPSKQRGKRKPLSAD
LPRIEVIHDLPEHELTCACGCRKHVVGEQTSEQLDIVPMQIRVLKHVRKI
YGCRGCETAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGLPLHRFETV
LNRHGIEIPRQTLARWVIQCSEHFQPLLNLMRDRLLESPVIHCDETRVQV
LKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLRLLEGYRGY
VMTDDYAGYNALALQPGVERLACMAHVRRKFVEAQKVQPKGKSGRADVAL
TMINKLYGIERDLKDASDEQRFIGRQERSLPILEQLKSWLDKTHSQVTPQ
SVLGKAVLYLANNWNRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFS
DTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPHASSVADYEALL
PWNCSPEMPR
>PP3882 phage terminase, small subunit, putative
MAGRRPTPTELKLVRGNPGKRPINKNEPQPAKRIPSAPDHLSSDGQVAWG
RLTVLLDRMGVLTEADGFALERLCDCYSEILALRDVIGEQGRTYETTSTQ
GELVLKANPAVAMLADVDRRFKSYLVEFGLTPAARSKVQVKDDEPKEDQF
AEFFG
>PP2565 helicase, putative
MKKRFKADVAQRLPAEAQPSAAQWKLIFSDTPSTCVVAGAGAGKSTSLVL
RILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQPVQAR
ELVRTFHSRILPLVRSLPGFGQVRAFETLGHEMPAGREAEADSNPFDLRL
NDAQRQQLNQCYSSLLGESPRFAELVGQLRSEALQLKPLDPNNPDVQKRA
QVTQLAAQRDEELCDVIEDLWFAAGVWPIKGIEPCRETVDIRGSRFHVHG
RLEGQGPLVVLGFDPAQSAQYQRPGAKLTVRAEWAVKRTLLQAFCDRPLI
WLDNYAMARRLAASLAGDAVAGPGFEYKVKGELAPAPLLDAFVSAANFIE
NLGLEVNNAVAAMSFPSGDSDALFFEALALYWKALEAHLLDQSPPVMSYN
RMFALFGENNPENLHLLPDPLLRPLAHLMIDEFQDVSPQIVSWLRACLAE
IRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSSPKYFMEFTKAFPSP
ANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPAAELPGSPV
KVFDRDEAALGETLVEHYQRGETVMMLYRKGSDRALMNEHLQSVLHAEAA
LPAEQRRLRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGK
AGDAQPFDTAQKEEVQRLAYVAVTRAVQHCYWHVEAANGDAAAAPRASSH
VDGKQAFFEDLRGQ
>PP3681 helicase, putative
MISHDQWAPSLGVRLEKNAWSVVRELDRSILLTAGPGAGKTEVLAQRADY
LLRTNSCRFPKRILAVSFKTDASRNLKERIQLRCGWNFASRFDSVTFHGF
AKRIIDKFLPILAEEGLSPDYAIGAETIPGKQITFKQLLPLAIKIIQRSE
VARNAIRKTYAHVFLDEFQDCTADQYELIKLLFLGTGIHLTAVGDRKQMI
MGWAGALEGIFKTYATDFDALPLHLYANFRSKSNLLRVQNEIIREIDPSA
VTPAELISGDEGEVLAVHFQHSSQEATVLADSIFHWIEAGVPPREIAVLM
PRQVDDYGSALMAELGNRGIASRNDSDLQDLLKEPAARLVIDYLTCLYGK
GQSDAWARLMDLFTPYEEASRDHLHRLFETTYRAHVRQVKVASKTPSPYE
DWWKLTSSFIRDVGYPILTALSGDYESKLRLHEVVREVRDRVGALLSSEK
TIPGALARLSDDQAVRFLTIHKSKGLEFHTVIILGVETQAFWGKLAEERC
VYFVGVSRAKERLLITTAEYRPKPKNAGRWTEHRTPHGEFVSQVTRHLTG
RL
>PP3172 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPNPGQKPRVMPDSAKVPAASATWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGMTVADLAGYVKQYWPTL
KARLLAGEYHPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVELDLEKFFDRVNH
DILMACIERRIKDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP3114 ISPpu13, transposase Orf2
MISMPENLPDDPVLLKQLLEQMIHERASDKSKIVHLEEEVALLRQRLFGR
KTEQTGDAATPQLPLFDEAESLAEPLDEADDEEVVAPTKRRGKRKPLPAD
LPRIEVVHELPEHELTCACGCRKHAIGEEVSEQLEIVPMQIRVIKHVRKV
YGCRDCESAPVTADKPAQMIEKSMASPSVLAMLLTTKYVDGLPLHRFEKV
LGRHGIDIPRQTLARWVIQCSEHFQPLLNLMRESLLKSRIIHCDETRVQV
LKEPGREPSSQSWMWVQTGGPPDRPVILFDYATSRAQEVPVRLLDGYRGY
VMTDDYAGYNALAAQDGLERLGCWAHARRKFVEAQKVQPKGKTGRADIAL
NLINKLYGVERDLKDSDDEDRKVARMERSLPLLTQLKNWVEKTQPQVTTQ
NALGKAIGYLASNWSKLERYVEHGYLPMDNNAAERAIRPFVIGRKNWLFS
DTPRGATASAQLYSLVETAKANGQEPYAWLRHALERLPQAASVEDYEALL
PWNCKPKIHS
>PP0531 hypothetical protein
MATRGSTTFGETCSSNHLPLCTCRSAYLRDGHIGKPRKRTVMSSLYPFTD
TDLHLAFRKVVDTLFDKKRDYVDGVLKPKMLIIAGAQGSGKTYLLEKTLL
KSGRYDNYVRLYETHFRELHPHYRAMEDKGVLHVYEHTEPFIWRLGAMIC
TYAMENKYNIIMETALDSPHFADFPPDAALKGYQSEVHLIACQKEFSHWS
TLDRVVNSVGNHELERVVSLTQIEEAQINGRSIIDAFENACIEVPGSEIV
IYRRGLETDRNSLPVCHSTCPEKGRLVPQQTYQGREFFRGADLKIDFKVQ
RSPQADFPCSYIQYAQVVHAGLLGSKHRRTMAELNCKTLGQAQKLMSQLP
VDVYRELCLYVLKYAQP
>PP3986 ISPpu13, transposase Orf1
MRPDAKVEKVYLYPKPVDFRKSIDGLAALVELDIKVAVFDPVLFVFLNKP
RNRVKILYWERNGFCLWLKRLESERFKTSPDPTDVAIVLTVQELNWLLDG
FDLWRNRPHQVLTPRYVA
>PP5396 ISPpu14, transposase Orf3
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIQNDEILIEQFKFEI
ALLKRHKFAKRSEQISPAQGSLLDDLLDTDLEAIEAELKQLLPASSQAEP
RQSPKRAPLPPQFPRAVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGV
FTVEQHVRGKWACRQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADH
LPLYRQEKILGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLKQGVI
HADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHAR
NFLGDWSGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQL
AEQALHSISGLYEVERQAREMSDEDRWRIRQELAVPISKTLHEWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGSVPIDNNQVENQIRPWALGRS
NWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQRASEI
GQLLPHQWVSA
>PP0705 DNA-3-methyladenine glycosylase
MMLADLSPEAYHEAAQHLAALDPDWSRHIAAIGPCLHQATPGREPYEALV
RAIAYQQLHARAAEAILGRLLALFPADDFPQPEQLLAVSPETLRACGFSA
SKLVTVQGIAQATLEGLVPTREQALTMADEALIERLVALRGVGRWTVEML
LIYSLGRSDILPVDDFGVREGYRRLKGLETAPTPAQMRSLGGAWRPFRTV
AAWYLWRA
>PP1868 ATP-dependent RNA helicase, DEAD box family
MTQETGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQA
QTGTGKTAAFALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQ
MPGVNVVAVYGGAPMGPQLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTV
QYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLFSATLPSSIRSIAER
HLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDALIA
FVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVT
PRERRMLQVIERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEA
THGELFDRLTTDLGCSARALASALLRKATNGQALDLAAVEREQPLVPSFA
PRGERTERGERGERPDRGDRERRAPLPLAEGRVRCRTALGARDGIAAKNL
LGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKDTRVAGKQ
LKLRRYRED
>PP3889 phage integrase, putative
MSATREVKLSEAEVRRQATDKSVRDLRDPRHPGLYLRFWSSRERGTWHLV
RGKKWVPIARWPELSVAAVLAELPALRQRLMRHPATAPVVSGMATVGQLL
DWYVDRMSHDRSLSAKRKAATRAAIGQHVRPCLGDLPIKYITAELIDKHL
IWPGQAKLSLSYLRQMFGMLLTAFRQALKLGMIDSNPMAGVRFNDFTKAK
ILPKAARLRSVQLPELMQQLAQAFEAAPNDAMLALMMLAHGTRIGETRMA
RWSEVSLAASEWFIPAAHTKTRTEHRLPLTAQLKALLTRYRGIQQARGYE
GVYLFPNRRGHCLSETQASMVFTRLGQGEWTSHDLRKVSRSTWTDLGIDG
HIGEMLLNHTLGKIASTYIHTQAMEQRKLALEKWHAWLDRIGFAAIHGLK
EALFEIPQKSPQANGGEASGDLSELVFSEDSK
>PP4599 ISPpu10, transposase
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGS
ALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLS
GDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS
EVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
>PP1642 conserved hypothetical protein
MRDYQWLHEYCLNRFGSAQALEAFLPQPRTPAQLRDISDDRYLSTLALRV
FRAGLKHSLVDAKWPAFEQVFFGFDPEKVVLMGAEHLERLMQDERIIRHL
GKLKSVPRNAQMVLDIAKAHGSFGAFIADWPVTDIVGLWKYLAKHGNQLG
GLSAPRFLRMVGKDTFIPTDDMAAALIAQKVIDKQPTSQRDLALVQQAFN
QWHAESGRPLCQLSVMLAHTVNH
>PP2297 integrative genetic element Ppu40, integrase
MTLNGGNVLKALGADTLLSDITTEAITEMVLEFEDLGNSGSTVNRKLSLL
SMVLKTAVNHNWLLSVPRMIRRKEGKHRIRWMNTEEEGNVLKACQHLGLN
CLHDFIIVAVDTGFRRAELLGLSAPDFQEGMIHLYAGQTKNGDARAIPAT
SRVARILHRRRMNLTTFEGLTVSSLRHQWATLRAYMGMEEDPQFIVHMLR
HTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQARNALEAA
PAQPTAFESVERDTFFNYGEATTA
>PP4002 ATPase, AAA family
MDLFRSEPVAQPLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSM
IFWGPPGVGKTTLARLLAQFCDAHFETVSAVLAGVKEIRQAVEVAKQQAG
QYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNA
LLSRARVYVLKSLDEAALRKLVNRALTEERGLGKRNLRVGDDAFKMLMAA
ADGDGRRMLNFLENASDLAEDGSEIDVEMLQSLLGDSRRRFDKGGEAFYD
QISALHKSVRGSNPDGALYWFARMLDGGCDPLYIARRVVRMASEDIGNAD
PRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAVYVGFKTAL
REAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFP
DELEPRQYYQPVPRGLELKIGEKLRHLADLDRNSPRQRRKP
>PP2937 integrase, putative
MVLLNERALNAINQAQRMDTLRRMASKSAHLTSPFVFQPSKGGLWINEPS
VTIRHFKSALKALNIRERRQYDTRHTYATLCLMPGMNPAFIASQLGHSVE
MLLSTYAKWISSSSDWRELEKLPPRVELAQNWPKTDDRA
>PP3791 site-specific recombinase, phage integrase family
MNAITTSSHQPLNKGKLVGQKAPLRLKDIWAIRVRLQIAEETRDLALFDL
AIDSKLKLRACDLTKLRVRDVAHGEHVSSRAIVMQQKTQRPVQFEITEQT
RLALQAWIHQAQLHSEDCLFPSRLHASVHLSTRQYARMVKAWIKSIGLDP
AMYGTHTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDAL
EMAEQTEV
>PP2977 Tn4652, transposase subunit B
MIWQLIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDE
ELAVQIHRVWQENYEVYGARKVWRQMHREHQVVARCTVERLMREMGLCGV
TRGKTVKTTQPDPDNANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAY
VAFIVDVYSRFIVGWRVSRHMRTEFVLDALEQALHTRRPEPHRLVHHSDR
GSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTELIHKRG
PWKSVDSLEWETLKWVTWFNHQRLLEPIGNRPPAEFEALYEQSQATISVA
A
>PP2522 ISPpu8, transposase
MAKLALEQAIAPEWVDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPS
LHAAARQLDDLPVSLAALYDKISRTEPALLRALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQV
IDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTL
HSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHL
AVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
>PP4092 ISPpu15, transposase Orf1
MMRPDSKVEKVYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNK
ARNRIKVLYWERNGFCLWLKRLEAERFKTSPNATDEAIVLTVQELNWLLD
GFDLWRNRPHQVLTPRFVA
>PP3500 ISPpu14, transposase Orf2
MIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRM
KVLVHDGVGVWLAARRLNQGKFHWPGIRHGCEVELDSEQLQALVLGLPWQ
RVGAGGVISML
>PP5050 ISPpu10, transposase
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGS
ALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLS
GDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS
EVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
>PP4996 conserved hypothetical protein TIGR00250
MADLRLLLGFDYGSKQIGVAVGQVITGQARELCTLKAQNGVPDWAQVEKL
IAEWKPDAIVVGLPLNMDGTPSEMSARAEKFARRLNGRFNLPVHTHDERL
TTFEAKGERMARGGQRGSYRDNPVDAIAAALLLQGWLEANT
>PP2981 Tn4652, cointegrate resolution protein S
MKDVGRYLQAGTRENTRRSYQSAIEHFEVTWGGFLPATSDNIVRYLVEYA
DTLSLSTLKQRLAALAQWHITQGFPDPTKTPTVRQVLKGIRTLHPAQTKQ
AAPLQLQHLEQAIQWLSREAEQAQQSGNLASLLRSRRDAALLLIGFWRGF
RSDELCRLQVEHIQAEAGAGMSLFLPQSKGDRDNLGTTHYVPALKCLCPV
QAYLDWISAAGIARGAVFCRLDRWGHLSDEALHPGSLISLLRQILQRAGI
SAELYTSHSLRRGFASWATANGWDLKALMTYVGWKDIKSAMRYIDPAISF
GGLAAKPVLELHAGPLGQLSASH
>PP5086 thermonuclease family protein
MGAFFVGVIWHFPVLAFCPLPDKPQWVAVRQVVDGDTLRLVDGRSVRLIG
INAPEMGRKGRTSEPYAEAARRRLQALVKANDDRVGLVPGVEGKDKYGRT
LAHIYSRNGDNLEAQLLSEGLGYRVAIAPNVRLSGCQQLAEQAARQAGVG
LWRHSPVVAASDVRQSGFAVVRGRIEGIERNRGGVWLTLGSTLVLQVPAR
LQRNFPASFFDNLKGRQVEARGWVLDRSRRGGLKPGQRRWVLPLTDPSML
ERISG
>PP5290 ISPpu10, transposase
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGS
ALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLS
GDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS
EVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
>PP1252 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPSSGQKPRVTPDSAKVSTASVTWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGMTVADLAGYVRQYWPTL
KVRLLAGEYQPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVELDLEKFFDRVNH
DILMACIERRIRDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP2976 Tn4652, transposase subunit A
MSKHTKFSPEVRDRAIRMVYEVRESRTSQWAAIEAVASKIGCTAQTLSSW
IRKAAAPAAPSASGTDARVKELEREVRELKRANEILKVASAFSAQAELDR
RLK
>PP1250 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPSSGQKPRVTPDSAKVSTASVTWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGMTVADLAGYVRQYWPTL
KVRLLAGEYQPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVELDLEKFFDRVNH
DILMACIERRIRDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP2839 conserved hypothetical protein
MPRALERNTLSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHQRVV
ARRAAGYESEIALEGQFETLRVRGRADGYDPASNRLEEIKTHRGDLARQP
ANHRQLHWAQAKVYGWLMCQARQLPAIEVALVYLDVDSDGQTLFTEHCSA
AELQAFFETQCQRFLGWARWQQRRLAERDQGLLALSFPYPQFRKGQRQLA
ETLYKAVSTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQLDKLFFLTAKT
PGRALALDALRQITDATPQPALRTLELIARDKACEYPDKACHGESCPLAA
GFYDRLPAAREAAAALPLLDRANLREVALAHQVCPYYLGQEMARWADVLV
ADYNYYFDAHALLFGLTQLNQWRVAVLVDEAHNLVERGRGMYSASLDQGQ
LLALRQSKPPGLVSALDRLNRQWNALYKEQRAPYQASESLPEGLLRALQQ
CVGVIQEQMNQAPTHIDPQVLQFYYQALQFCRVAELFDEHFLFDISQRQG
PRKRRLATLCLRNVTPARLLAPRMQAARSVTLFSATLSPRHFYSDLLGMP
ADTAWLDVAAPFRAEQLEVRIASQVSTRYQQRQASLAPIVDLIARQYERM
PGNYLAFFSSFEYLQQVAGLLAEQHGQIPLWSQEPGMDEAARQAFLDRFV
ADGRGVGFAVLGGAFGEGVDLPGTRLIGAFVATLGLPQVNPVNEQFKQRL
GRQFGAGFDYAYLYPGVRKVIQAAGRVIRGDQDRGVLVLIDERFAEPRVQ
QMFPGWWAAAIV
>PP3087 excinuclease ABC, A subunit, putative
MPPSPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAF
STLYAEAQRRYFESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTP
SARSSVGSVTTLSSSIRMLYSRAGHYPPGQAMLYAEDFSPNTPQGACPQC
HGLGRVYEVTEATMVPDPSLTIRERAVAAWPMAWQGQNLRDILVTLGYDV
DIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGT
FMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTF
AGLDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKE
LLERIDTLLDLGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVL
DEPSAGLHPADSEALFEALQRLKQAGNSVYVVEHDLDTMRRADWLVDVGP
AAGEHGGTILYSGPPAGLAEVQQSCTRTYLFDAPVQATRAPRQARDWLKL
EGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHA
EQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLA
TYTGLFDHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVE
LLFMPSVYAPCPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAE
QPPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLATELQRMARGAT
LYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWVI
DIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL
>PP2387 hypothetical protein
MTTTDTRPSPSPLQQDYQRFLLLGSRRAPYTLHVHETGYRSGTINTDALG
LRYSHCAGKRFSAAEHGGASRINLLVGGSTALGIGASSDEHTVASHLSML
TGEVWLSLAGCGLNATQELMMFLTHQHRLGQLGHVVVLSGLNSLAHEALC
EVLAGTNDPQHAKAYQAFLNSFSEGMQPCAPPRRQSLWRRIGQALTPPVA
APPVSWPLSPPEKRLARAADNIGRTLRQWDRLLADSHATLTFILQPLLPW
CRDTLPAGEQAMLTALQQQPANFDRLLEGAFDRQLHSAFFRRIKSQADPV
PCYDMNCMLDSSPVFGADLFIDRLHLNDLGNNALAKVITAKLGLAQEKHA
QRKVTPIKLV
>PP3920 phage integrase, putative
MRPRKTENRDLPPGMYRRKRQKANGKVWEALYYRDRSGKDIFLGNDLVKA
KLKWAELEAKSVPKELTTMKGIFDEYLLKIVPGKAVRTQKDNIYELKQLR
NVFDSAPIDAITPAMIAQYRDSRSAKTRANREIALLSHVFNTAREWGLTT
RDNPCLGVRKNKEKPRDFYANETVWQAVYEEAPPELKDAMDLAYLTGQRP
SDVLSMRKDDMEGIYLLVSQGKTGKRLRIVLEVDGVKNSLGLLLERIMHR
TSGHLSPFFIVNEHGKRMSWPMLRNRWADAREDARVKAEVEKKPDLANRI
AQFQFRDIRPKAASEINDLSDASVLLGHSKEGITERVYRRVGAIAKPSK
>PP0635 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPSSGQKPRVTPDSAKVSTASVTWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGITVADLAGYVKQYWPTL
KARLLAGEYHPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVEIDLEKFFDRVNH
DILMACIERRVKDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP5114 conserved hypothetical protein TIGR00095
MPRSTPPARPQAGQSKGQGHLRIIAGEWRSRRLAVPEGEGLRPTPDRVRE
TVFNWLAPYIEGARVLDAFTGSGALVLEALSRGAEDAVALDSNPAAIANL
KNNLEILRCPRGQILQTDALRYLQGPAKQQFDVVFLDPPFHQDLLANTCN
MLEQNQWLGEQAWVYTESEAAPSTLQLPGNWRLHREKKTGQVHYALWQRG
>PP0649 MutT/nudix family protein
MEAEKSCPVVLRGRETLEILAFEHPLAGFQLVKGSVEPGEATDLAAVREL
KEEAGIPSTVGRHLGERRFIVTGHTWAFHECHVAQDLPDTWVHFAEDDGG
HEFRFFWHPLMSEPSENWHQVFKDALSFIRKRLTEA
>PP3691 DNA helicase-related protein
MDDIVQPLKAQEEIPPKEVKILATLVAKLNLADFQNAIPVIRELRIANET
EDRFVNATLTLTSDPEVFKPKVWRIDEVAADSFRIIPGLDLVLDGPLLSR
LTEAELSTFTFVFEADDKEAESGRKEVARIEQVVDLLPRNQWGGLRHIPD
MTAAFVQPNDPAVERLLKQTAELLRQSELSSSLDGYEGGAKRAWQLASAV
WSAVARMKLDYALPPASFEQSGQKVRSPSQIADTGLATCMDLTLLFCAAL
EQIGLNPVIVFTRGHAFAGLWMKAEEFTTALIDDVTAVRKRVKLRELVLF
ETTLSTQNLVPTFSYAVERGEKQIAEDADSEFEMLLDIRRARLQRIKPLA
SAEAQIARIADEVSDDSPSLLVEDGAGIPDEIHEVVVEDLSKLDPADRLG
RWQRKLLDLSLRNNLLNFKMAKRALKLESPDPGALEDILASGQSLKLLTR
PDLMDGADPRERALYEQREREDVRRRHAEDALKRREVFVALTSNEMDVRL
TELYRGARTALQEGGSNTLFLAIGFLSWTREDRAGQKYKAPLVLVPVTLE
RKSARSGFTMVLHDDEPRFNPTLIEMLRQDFELGLGSLEHELPRDDSGLD
IAGIWNKVGHAIKDIPGWELSEDVVLSMFSFAKYLMWKDLAENAEHLRQS
PVVQHLLDTPRDSFVSDTPFPEAESLDRDYGPTDVFCPLPSDSSQLSAVM
AAAKGKDFVLIGPPGTGKSQTISNMIAQSIAQGRRVLFVSEKIAALDVVY
RRLREIGLGEFCLELHSSKARKTDVLAQLQSAWEAKGQLDSAAWEVEAQR
LATLRDSLNIYVERLHRRHRNGYSIYDAIGTVTSGGDEAVAPVGWASPDT
HDQKAMLELRELGDRLEVNAQAVGYSLLAGNALSAVGQAEWSPHWQQQFV
QAARDVLPVVLDVQRAADRFVELAGLPVTEYTPTALEGLSVLSQALPAAA
GQDWRFALRPDARSISQRLSDGCAWVEQHRALNVKLSPLWSSRVMADAKQ
GIELLQQRRTTFGELSPAWPESVTDVLAQAVALLGQIVELKQQLSATYGD
TIESLDIDLLLREWKEAEEAFWPKSWFGKRRIAGLLAPSQTTAGEADHGK
DLATWAEIRAVRRAIDELEPGHECVVVWQGSKSVAEQLSTSIKLQEAIRL
QQADSDWIDDGLQLVEQGQLGDGLKEELRRLRTLTRLDSDMSALSDLGSS
TQQLWCGKDTNIELLTAALRFQAERRDIEERGRLVDDHPEVQEGRCGALL
KGDFDLLKQRAAVERDLSDLADLRELVPVWSDLKTKLEIARQAVAFQGQV
ATAVAKLALNPEQIAAYKAPLQTLLGDGNALLEPAGAIALAGVGLRERLA
LLQERSSHLTSIGHFTEAGTDETAHLSLDDLKKSCETVVSSEARLKAWCA
WRKVRDEAFAVGLAPIVQAMERGAITSGKVRRVFEVNYARWWLNTTVDNE
EVIRTFVSVEHEQRIRDFRALDDKFTELTKDWLRARLCADLPSQDSVSRS
SEWGLLRHEMGKKTKHIPLRELMTRAPEALTKLTPCLLMSPLSIAQYLPP
ASTPFDLVIFDEASQIPVWDAIGAMARGKQVVMVGDPKQLPPTSFFDRAE
STAEDEDVEADLESILDECISANLPMRNLNWHYRSRHESLIAFSNQRYYG
SKLVTFPSPFTADKAVKLCPVAGVYDKGGSRTNLIEARALVADLVARLQS
SAFRESRRTVGVVTFNGEQQKLIMDMLDEACRKDPSLDSYFAESELEPVF
VKNLESVQGDERDIIYFSTTYGKDAAGVMSMNFGPMNRPGGERRLNVAIT
RARQELVLFSTLRPEHIDLARTQAVGVRDLKHFLEFAERGPRALAEANFG
SVGGFDSPFEEAVAAALAKKGWQVHTQIGVSSFRVDLGVVHPDAPGRFLA
GVECDGATYHRSATARDRDKLREFVLRGLGWEIVRIWSTDWWVDAVGTAE
KVHQHLTELLSESRAKQAVIDAAHEAERLKVDAAMADVIEVVDQLAVVAS
PTIAVANDPSGALPELKYARAVTAQAIEEVVIPYVPVEHLVYKEADPTEA
VEAVDPDRFFEASYTTTLEQMIAHVVAEEGPVLDTALARRIARAHGWVRT
GSRIRDRVDQIARTRFRFHEEEQAGTFFWPDHLGSDSNVAFRRPGDDAIR
PLGEICLPELGALVDEMTKHGHVGEGLVYAVAKEAGVSKLAHAGRQRIEK
AIRRFDE
>PP4745 ISPpu15, transposase Orf2
MISVPDNLPDDPAALKLLLAQLLAERTVDKGQIVDLKEQVKLLRDRLFNR
KSEQTVESNTPQLALFNEPESQWVPTADDADEEVVAPSKQRGKRKPLSAD
LPRIEVIHDLPEHELTCACGCRKHVVGEQTSEQLDIVPMQIRVLKHVRKI
YGCRGCETAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGLPLHRFETV
LNRHGIEIPRQTLARWVIQCSEHFQPLLNLMRDRLLESPVIHCDETRVQV
LKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLRLLEGYRGY
VMTDDYAGYNALALQPGVERLACMAHVRRKFVEAQKVQPKGKSGRADVAL
TMINKLYGIERDLKDASDEQRFIGRQERSLPILEQLKSWLDKTHSQVTPQ
SVLGKAVLYLANNWNRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFS
DTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPHASSVADYEALL
PWNCSPEMPR
>PP4980 ATP-dependent RNA helicase, DEAD box family
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTG
KTGGFALPILERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFK
VYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVD
LAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITD
LADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWE
QVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAI
SLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNG
RGGRNQQARGEGGKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQP
RKPRDKKSRPQQASNNSVPKPPADRDPEEFLDDELDNFGNRADYVSPYQG
KNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPRA
NNGGGARRDGGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESKLDR
FPTPEQLDDLPSRPRGERPALLTRKG
>PP2982 Tn4652, cointegrate resolution protein T, putative
MARGGINKALVQKARQAILARGENPSIDAVRVELGNTGSKTTIHRYLKEL
EDAERGRNTAAIPLSEQLANLVGQLADQLEEDAQATVAQEREQLQRERLD
YQNQARLAESRIQQLESQSSGLTEQLQAVQQALQQEQQQRQQTEVENARL
AQANGDQEVRLQDRDSQIRSLEEKHQHARDALEHYRQASKEQREQEQRRH
ESQVQQLQLELRQLQQTLIIKQDELTQLNRDNARLLTEARQLQKEQHAQQ
QLLAQKNQAMEALQSVLAGSERSNEALEQRCRTLQEEVSRLGEASATLAQ
QAQGLQERLVEANTQLKLLRAPLANSDGAPST
>PP5146 (di)nucleoside polyphosphate hydrolase, putative
MIDPDGFRPNVGIILTNDAGQVLWARRINQDAWQFPQGGINPDETPEDAL
YRELNEEVGLERDDVEILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWF
LLRLVSNEQRVRMDLTGKPEFDGWRWVSYWYPLGQVVTFKREVYRRALKE
LAPRLLTRD
>PP3793 transposase family protein
MSQMSFSDFEYAGKRKQTRRERFLAEMDQVVPWAGLLGLIEPFYPKAGGG
RKPYPLETMLRIHLLQNWFSLSDPAMEEALYEITPMRQFAHLTLSAPIPE
DTTIMNFRHLLEKHQLAPAILAVINGYLQEKGLSLRQGTIVDATIIHVPS
STKNKDGERDPEMHQTKKGNQYFFGMKAHISADVESGLVHHVHGTAANVA
DVTQVAELLHGEENAVYADAGYTGVEKREEHENRDVIWQIAARRSTYSKL
NKRSLLYKAKRKIEYCKAQTRAKVEHPFRVIKRQFGYVKVRFRGLMKNTA
QLTTLFALSNLWMARKRLMGLGELRI
>PP3678 hypothetical protein
MTKQLYSIYESEIIPDAAQPNHKTGEFSAKYRKIRNLALMRWPNSRPCHL
ANQWLFHMSTKTNAKDSCKTVASELTHLIRYCYVKNISINDFNDTHFNKL
TEDLSNEVTLTPTGARPKRNRNRIRQIQHTTLNFLYWISENMSGLNDFPI
VGPGNSGANIIIELKINPHNGRQYLDHPDLVPTEDEVYDKAPIDEHTIQK
LQDEIFRRHDWEELPPGATLKYKHNPDLYVATNLYIYERRMFIIRMMKLM
GMRPEELYDLDLKDNLHVLEKKEILVPTKKRGIPAPIRHFKVNAPSARQF
DAYLDARKSYIDFLHSRGIKCVHPEKILIGAYGSRIKKESITKEFDRICE
DAGLTSIRVCLSMFRHRFVTREVRIRLELRFAKHPELKNGWTAGLRDEVC
REVIELTGHADPASLHHYFHSEYTAVTSDATYSSMLKLKDEIDAANETIT
ALEHKAKIGKIDCSVEITSLKSTVASLQSLLSRLGAA
>PP0526 ISPpu10, transposase
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGS
ALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLS
GDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS
EVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
>PP4768 exonuclease
MERIAVIDFETTGISPGTGCRATEVAVVMLEGGRIVERYQSLMNAGVPVP
AFVAGLTGITTAMLRSAPPVEKVMNEVAEFVGGTPLLAHNAAFDQKFWDY
ELGRIGRSRSQPFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRA
MADAEMAANLLQYLAGVLRQDHGVQQLSHELLCRLQKTPAAKLREALAKY
CRD
>PP4441 ISPpu14, transposase Orf1
MRQRSSYPKPFKAQVVQECLQPGATVSSVAISHGINANVIRKWLPLYRDQ
PAAASIPAFVPLKTAPKRPVEASVIIELPMTGQVITVKWPTSDPEGCAQF
IRAVAQ
>PP4532 ATP-dependent RNA helicase, DEAD box family
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGK
TAAFVLPLLNRLVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYI
KSGLVTGGEDFKEQAAMLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLI
LDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGAALRDIIGKVLK
DPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAIIFT
NTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVAT
DVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHN
DWNLMSSIERYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEK
KTGDKKAAAKRKPTAKPKANAPLASADGLAPLKKRKPAAE
>PP3026 phage recombinase, putative
MQASQGVVYSYLRFSDPRQAAGNSADRQAEYAKSWAAARGLTLDESLSLR
DEGLSAFHQRHIKQGALGVFLQAVDEGRIPAGSVLVVEGLDRLSRAEPIQ
AQAQLAQIINAGITVVTASDGREYNRERLKAQPMDLVYSLLVMIRAHEES
DTKSKRVKASIKRLCDGWVAGHYRGLIRNGSDPRWVRLVDGHWELIPERV
EVVRFAIDKYREGHGADRAHAMMQERGFDTSYLGISPQQIYRLIKLVALK
GAKQISVDGEDFLLKDYYPRLLTDVEFDELQLLRGQRSRRRGKGAIPGVV
TGIGITYCGYCGTPMTAQNVMHKVRSDGTLMDGHRRIMCMSYMNKGGCDV
GGSCSVAPVERAVMSFCSDQMNLLRLQQPVGPSGDLQQGVMISRKHVVDL
EAQLGRITEALALGEGDGVLPITFLRKARDLEEQLTAAKAKLHQEERELA
GIASRQRPADARAWLDLAAGVEAQEVEARDKVRQLMIDTFDRIVIYMRGV
VPAGRRARYIDVLLISKAGQRRWLRVERKTGEWAAGVDRPD
>PP4091 ISPpu15, transposase Orf2
MISVPDNLPDDPAALKLLLAQLLAERTVDKGQIVDLKEQVKLLRDRLFNR
KSEQTVESNTPQLALFNEPESQWVPTADDADEEVVAPSKQRGKRKPLSAD
LPRIEVIHDLPEHELTCACGCRKHVVGEQTSEQLDIVPMQIRVLKHVRKI
YGCRGCESAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGLPLHRFETV
LNRHGIEIPRQTLARWVIQCSEHFQPLLNLMRDRLLESPVIHCDETRVQV
LKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLRLLEGYRGY
VMTDDYAGYNALALQPGVERLACMAHVRRKFVEAQKVQPKGKTGRADVAL
TMINKLYGIERDLKDASDEQRFIGRQERSLPILEQLKSWLDKTHSQVTPQ
SVLGKAVLYLANNWNRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFS
DTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPHASSVADYEALL
PWNCSPEMPR
>PP2270 DNA primase/helicase
MPMKNRKHETVSEFVRHLPCENCGSSDANSIYTDNHQYCFACEHYVHGDG
ETPTTGGRTKRMEGLISGEFKPLMKRKLTLETCRKFGYFVSEVRGRLVQV
APYFDNSGVMVAQKLRDQDKGFAILGDGAKLTLFGQNLWASGGKKIVVTE
GELDAMSVSQVQNNKWPVVSLPNGAPAARKAIQRNIEYLESFEEVILMFD
MDEPGREAAQECAELFSPGKCKIATLSMKDANELLVAGREQEIVTAIWNA
KLYRPDGVVNVRDLLEEIRKALVMGLPWFLDPLTQLTYGRRYGEVYGLGA
GTGVGKTDFLTQQIAYDIQVLGERVGTIFLEQKPTETAKRVAGKIAGKRF
HVPKDTAGWTDEELDAAVDALGENLVMYDAFGETEWDIVKRKVRYMAVSE
GIKLIYIDHLTAMADTADEKGSLEQIMKEMAGLANELGIIITFISHLTTP
EGKPHEEGGRVTIRHFKGSRAIGFWSYFMFGLERDQQAEDPVVRQTTTFR
ILKDRYTGQATGEVLYLAYDRDTGLLSLTEAPEPSSPFKDESEF
>PP2311 hydrolase, TatD family
MQLIDIGVNLTNSSFHDQQAAIVERALEAGVTQMLLTGTSLAVSEQALEL
CQQLDASGAHLFATAGVHPHDAKAWDTDSERQLRLLLSEPRVRAVGECGL
DFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDASERLLAILKDYRD
HLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDERRGTHLHPLVGNIP
EGRLMLESDAPYLLPRSLRPKPKSGRNEPAFLPEVLREVALHRGESAEHT
AAHTTATARDFFQLP
>PP2218 ISPpu8, transposase
MAKLALEQAIAPEWVDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPS
LHAAARQLDDLPVSLAALYDKISRTEPALLRALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQV
IDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTL
HSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHL
AVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
>PP2501 phage integrase, putative
MSKVTIKQLEALTAQDDGKVFREDGGLVAEVRVGVRGITVQFSYEFKLDG
ARTRKRLGSWPKKSLAQIRSERDEARVLVTKGLHPTLAAKAARIEAQAAI
ATTIAEAEREAAENKTVSDLFDEWIRDGVSRQDGNAELIRSFKKDVLPLI
GKKPLRNLTEKDLLAVLRSVKSRGLNRTVVIRSKDIGQMLRWAEKRKPWR
GLMTDGNPADLIDVNKLLDHDYEEQRDRLLSPDEIRELRDVLERLENDYD
ELPAGQKYSGIRPVNTRVQCALWICLSTLCRIGELLKAEWRYVDLEKGTW
FIPAEATKGHKGKRQDHHVFLSAFSIAQFKRLQEETGDTPFCFPSKDGRS
HVDTKTVSKLIGDRQCRFKNRSKPLAGRHHDDSLVLSKGTKGEWTPHDLR
RTGATMMQELGVTLEIIDRCQNHLLGGSKVRRHYLHHDYAKEKTEAWRLL
GEKLESILAGSPVAAVQSQ
>PP1990 ISPpu8, transposase
MAKLALEQAIAPEWVDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPS
LHAAARQLDDLPVSLAALYDKISRTEPALLRALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQV
IDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTL
HSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHL
AVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
>PP3119 DNA polymerase III, alpha subunit, putative
MAAGLVRMNTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITD
ECTLAGIVRAWQAAKVHQLRLIVGSEVQLCDGPKLVLLVENLTGYQNLCA
LITRARRRAEKGAYQLFRDDLLLHHQGLLALWVAADSGDTATGAWLRSVF
AERLWLAVHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRAL
QDCMTAIRQHCQVSEAGRFLFANGERHLRSQAQLAELYPLDLLAETLVIA
RRCQFDLSELNYQYPRELVPEGHTPASWLRELCEQGMPLRWPDGPSGKVR
DVLAKELGLIEELGYESYFLTVHDIVAFARSQRILCQGRGSAANSVVCFV
LGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDRREEVIQYVFRRYG
RHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSDRIPDD
QRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLV
PVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHR
GRHLTLATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYD
LVIEVAIVRPGPIQGDMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPL
FQEQVMELAMVAADYTPGEADQLRRSMAAWKRHGGLEPHRERLVQGMLRN
GYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKCHEPAIFTC
ALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLA
IRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAGLDARARARLAD
GGALRALASDRHQARWQVAAVQPQLPLFADVQALPEEPVQLPVPTVGEDL
MADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVV
GRQRPQTASGVTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGR
LEQENGVRHLIARRLEDVSPLLQGLDVRSRDFH
>PP0640 hypothetical protein
MFIKSLEYSESPGDPRSWKVTGLDFGNINLIVGKNASGKSRVISALFGLA
QIVAGRIPPKFSSGKWKVIFERTKGQMIEEQLYILELSGGRVVSEAMSIA
GRLVMARDDSGKGFVLKKTGSDRVSYKVPSDQLMVVVRRDEIQHPFFEHM
YNWGVTACCYRFGSDFGKSTLSANLQSAEIAELNISELADNVGHVFHATI
ERFGKEYKNMLLEDFAEIGYLCDDVLTTQVANHQMPGFVGFALAVREKGF
EFLTTQGEMSQGMYRALAILIQFNANILWTRAKMVGREPKPGDSPMVIVD
DIGEGLDFERSKSLINLLIGKAQKNSVQLIMASNDRFIMNVVPLEHWIVL
HREEGKVRAFNSSNSKSTFEEFEFMGLSNFDFFSGKYFLTEGNA
>PP3499 ISPpu14, transposase Orf1
MRQRSSYPKPFKAQVVQECLQPGATVSSVAINHGINANVIRKWLPLYRDQ
PAAASLPAFVPLKAAPKRPVEASVIIELPVAGQVITVKWPASDPEGCAQF
IRAFAQ
>PP2707 exodeoxyribonuclease III, putative
MKALKIATFNINGIRSRLPALLAWLEREQPDIACLQELKAADQQFPRAEL
EAAGYGSLHHGQPSWNGVAILVRGSDPLEVRRGLPGLEEDSQSRYLEAAA
HGVLVACLYLPNGNPLPGPKFDYKLHWFECLIQHARSLQESGHPTLLAGD
FNVVPTDMDIYNPRSWLKDALLQPESRACYQRLLDQGWLDAIRHLYPDER
VYTFWDYFRNHWARNAGLRIDHLLLNRELAPYLKRAGVDAWVRNQAKASD
HAPVWIELGTRRARS
>PP1962 site-specific recombinase, phage integrase family
MQETAGELESSKSGLLIKLLTLPGGDFPVSLESEFRDSIWKLADTTQSAC
NIRFDREIPGGNDLKRAIVYHLLPAFTPFNRIRSFVSSKAKSHDYRFIEI
YLLGPNRLSAIPEHLDLITNPMLNRALDDAKASGQPSHYSGLFFMLRFWL
SLSLNKLIPESLRLPEHITSFDSHERHKDVLDNFKGSIQSWVPLSEEDLE
KVVTEALFWLEKAIPRLLDLRQYIIENKIDQYEKGKVYSPTRQPDYEKIL
HIEIDGRKVSSFSITTSRNRNSIRYAYSWVIEYAQAIDKVRNAVFVFVAL
VTGMRKSELGGLKFDDITQDEAGLYWIDITRYKTSNDPNYNGETERLPLP
KFVGETIKSLRTLRSTWTFYREGFIFQSASSSIKVTKGVPQLPNTIIDYL
EEVTGIERLHPHRFRKTIAEILINRSERNIDLIRLLFGHHSYEMTLRYIS
RNPYMVRSVAMALEESFSKEFHEIVTAVRDGTHSGPGADRLAKQIVTRPD
DFKGKRLKLSILVYVSHLLSAGSPLYVGRTAMGTYCMSGEEFDETNLPPC
LAGRPRPKGRLLPDPTNCQVECHNAVVLGKAETAMKDNIHFYEQLLENAD
DSVSAKARRKIQAKIDAHKRHLLNLHDNAHTKALRIPVLEVS
>PP1105 DNA ligase, ATP-dependent, putative
MKAFATLFLRLDATTSSNAKLEALRDYFDMAPAEDAAWAVYFLAGGRPRQ
LVPTRLLRELATTLAGLPDWLFEESYQAVGDLAETISLLLPLHADGNEEG
LATWVEQHLLPLRGLTPEQVRQRLPPLWARLDRASLMLCLKLITGSFRVG
VSKLLVTRALAQLAGLDAKRVAQRLVGYTDIGHRPTAASYQRLIAPESAD
EHNQRGGQPYPFFLAHPLQVSSDQFDTLLGPPSDWQIEWKWDGIRAQVVK
RDGQLWVWSRGEELVTERFPELHGLAQTLPDGVVLDGEILVWKPGETETE
LAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHE
RRSQLEHLVDEHPLAPVLLSPLLQGPDWADLARQREQSRSLGVEGLMLKQ
REALYGVGRTKDMGIWWKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFA
VWDAPAGTPGRALVPFAKAYSGLSDEEMRKVDAIIRKTTVETFGPVRSVT
PTLVFELGFEGIALSRRHKSGIAVRFPRMLRWRLDKPVEEADDLATLQAL
LA
>PP1668 DnaA family protein
MKPPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIY
LWGKQGVGRSHLLQAATHRFQQRGEPAVYLPLAQLLDRGVELLDYLAQYE
LVCIDDLHVIAGKADWEEAMFHLFNRLRDSGRRLLLAASASPRELPIKLP
DLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGA
RSMSALFDLLERLDQASLQAQRKLTIPFLKETLGW
>PP3501 ISPpu14, transposase Orf3
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSKKIQNDEILIEQFKFEI
ALLKRHKFAKRSEQISPAQGSLLDDLLDTDLEAIEAELKQLLPASSQAEP
RQSPKRAPLPPQFPRTVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGV
FTVEHHVRGKWACRQCETLIQAPVPAQVIDKGVPTAGLLAHVMVAKFADH
LPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLNQGVI
HADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHAR
NFLGDWNGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQL
AEQALHSISGLYEVERQARDMSDEDRWRIRQEMAVPILKTLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRS
NWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQRASEI
GQLLPHQWVPA
>PP5187 conserved hypothetical protein
MHKETELKLRASRETLAALREHPLLKKRNKSGWQTRELLNQYFDTPEREL
SAARVALRLRRDGDAVIQTLKCRGQSVAGLSERNEYEWNLDKVKLDLKKL
DATCWPEQLANLDKKTIKPLFTTDFSREYAEIAWGRGKSKVVIEAALDQG
FVIAGKRKEEICELELELREGEPQALLELAAELAASLPLMPCDISKAERG
YRLLEPDSYELDLPHTALDAEMALDDAYAALAWQLLGSSQRLAEQYRHNG
HWRLLQDWVECLSELRALTASLGQAAPRATTRDLRASLDALLEDWRPLVQ
AGNDDEDIRRAAPEQFAEELEDVRWGQFSLETSRWLMARTWTAERKGRGE
RQGKAQLASWLGHLLGEEGRALKLPLYTQRPEDLAEQLPRIEQLLAWLHH
ARQVLEAPQMDRLYGDLKKLHELAEQPISDEVLEARIEQARAVDQSRGWK
HLLKA
>PP0791 deoxyribonuclease, TatD family
MRLIDTHTHLDFPDFDADRPRLLANAAARGLERMVVLGVYQANFQRVWEL
ACAEPRLFAALGLHPVYLDQHRPEHLVQLREWLERLRDNPRLCAVGEFGL
DYYLADLDKTRQQALFEAQLQMACDFELPALLHVRRSHAQVIATLKRYKP
ARAGVIHAFAGSYEEAREYIKLGFLLGLGGAGTWPQALRLRKTLARLPLE
SVVLETDSPDMAPAMYPGVRNSPEHLPEIATALAHVMGLDVEVLAQASTR
NACTLFGW
>PP4919 MutT/nudix family protein
MRISMSDALNAVPKGFEIIERANCFQGFYKLDKLRLRHELFAGGMGREIS
RELFVRHDAVCVLPYDPARDEVVLIEQFRVGALDKVANPWLIEMVAGLID
KDEQPEEVAHREAEEEAGLTFSALWPMTRYFPSPGGSDEYVHLFLGRCSS
EGAGGLHGLEEEGEDIRVRVWAFEDALQAVRDGRICNAATIIGLQWLALN
RDEVRGMWK
>PP1125 helicase, putative
MISNELKATIQGAYSRFLEAKSLKPRYGQRLMIAEVAKVLGDIACDDEGR
RAGEPAVVAVEAGTGTGKTVAYSLAAIPAAKAAGKRLVIATATVALQEQI
VFKDLPDLMRSSGLNFSFALAKGRGRYLCLSKLDILLQEGHAQSATAQLF
EEEGFRIEVDERSQKLFNSMIEKLAGNRWDGDRDSWPEALEDQDWARLTT
DHSQCTGRHCPNFQQCVFYKAREGMGKVDVIVTNHDMVLADLALGGGAVL
PDPRDTMYVFDEGHHLPDKAIGHFAHYSRLRSTADWLEQTAKNLTKLLAQ
HPLPGDLGKYIEQVPELAREVRTQQQFMFTLCEQVADFRPSEDTEGRERP
RYRFEGGVVPEQIREVGIELKKGFARLNDLFTRLADLLKEGMDGEVNIGI
ASHQAEEWYPLFGSLVTRAQGNWELWTAFTAEDPEDSPPMARWLTLAESG
ALFDIEVNASPILAADMLRRSLWSVAHGALVTSATLTALGKFDRFRMRSG
LPRDAVTCVVPSPFVHGDAGLLRVPDLQADPRDAAAHTAAIIRELPNIVE
DARGALVLFSSRKQMQDVFDGLDRDWRKLVLIQGNLSKQETLNKHKARVD
DGQHSVLFGLASFAEGVDLPGAYCEHVVIAKIPFAVPDDPVEAALAEWIE
ARGGNPFMEIAVPDASLKLIQACGRLLRTEQDRGVITLLDRRLVTQRYGK
AILNALPPFRREIS
>PP1865 ISPpu8, transposase
MAKLALEQAIAPEWVDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPS
LHAAARQLDDLPVSLAALYDKISRTEPALLRALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQV
IDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTL
HSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHL
AVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
>PP3981 ISPpu14, transposase Orf3
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSKKIQNDEILIEQFKFEI
ALLKRHKFAKRSEQISPAQGSLLDDLLDTDLEAIEAELKQLLPASSQAEP
RQSPKRAPLPPQFPRTVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGV
FTVEHHVRGKWACRQCETLIQAPVPAQVIDKGVPTAGLLAHVMVAKFADH
LPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLNQGVI
HADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHAR
NFLGDWNGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQL
AEQALHSISGLYEVERQARDMSDEDRWRIRQEMAVPILKTLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRS
NWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQRASEI
GQLLPHQWVPA
>PP2971 IS1246, transposase
MVRILVLKRLYNLSDEQMEYQLLDRMSYKRFCGLASAVNIPDRTTVWTFE
NRIGDAGAKVLFDGVTAQLLRHGFIARGGQIVDATLVPAPKQRNSREENK
LVREGAMPANWKPAKRRQKDTDATWTQKHGKNHFGYKLSVNVDKKYKIIR
KFETDTASVHDSKHFDALIDRSNTSRDVYADRGHTSADREGWLKDHGYRN
QIQRKGYRNKPLSECQQRRNHRIAKTRARVEHVFASIEQMGGKLIRTIGQ
GRANFAMTMMAACYNLKRLVYFQKAGIKAF
>PP4766 ATP-dependent RNA helicase, DEAD box family
MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTG
KTAGFALPVLQRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAEN
LPLTTYAVYGGVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQ
TLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIRMLAGLA
LNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWKQVLVF
AKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCA
DEVQLLAAIEVLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKP
KENSAKRGLGRWMDSTEAASAEPAVKAVRKVPSFNGGPRKRKP
>PP1653 ISPpu10, transposase
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGS
ALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLS
GDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS
EVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
>PP4791 ISPpu9, transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLL
KMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQT
LNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAAL
EQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVN
RAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFETRSQDRQVRALLRKARKLGYQLVAA
>PP3498 ISPpu11, transposase
MELCTTICVDLAKQVFQLAGEDATGRVIYEDRIKSRQAFHDFLLRLPTTV
AVLMECGPGAQAWARLLQAKGNPVRILPAQRVAEHRSGAKNDRNDCYAIL
RAGRDTSIASIPIKSTTALAIQALHRIRRGNIKRHTALGNQIRGLLLEHG
VSMPQGDAAINKHVPRALEDASLPLPDLLRELLDELLMDWLSLGERITAL
SRRLEATAQEDKVAQRLITIRGVGPIIATAIVAKQTDPSRFASGRMYSAF
FGIVPDQHSSGNKIRLGKMSKRGDGYIRSLMIQGAHSVLSQLRPDSDQPD
DRRLLRWLSRLGRKEAAIRLANRNLRIIWALLQSDQVYQRKPNEKPEAAM
SL
>PP1062 MutT/nudix family protein
MPNIIRIAAALLIDPQGRTLLVRKRGTEAFMQPGGKIDAGETPVQALVRE
LQEELGLRIDPAQAMHLGQFSAPAANEPGFEVQAELFRVDSAAAVVPAAE
IEEVVWLTADQAPVMPLAPLTRDLILPLYRQALNAPR
>PP4438 ISPpu14, transposase Orf2
MIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRM
KVLVHDGVGVWLAARRLNQGKFHWPGIRHGCEVELDSEQLQALVLGLPWQ
RVGAGGVISML
>PP4437 ISPpu14, transposase Orf1
MRQRSSYPKPFKAQVVQECLQPGATVSSVAINHGINANVIRKWLPLYRDQ
PAAASLPAFVPLKAAPKRPVEASVIIELPVAGQVITVKWPASDPEGCAQF
IRAFAQ
>PP2825 integrase, putative
MSKSLAGFRGALNNHILPTIGSIPVSEIKLDHIIEIIATLRRARTLAMAK
RVRTIIRAVLGFAEGRGWVERNVALSNTEELKVRHVVTSNPAIERPADLG
EFLLRLDELSPSSISIAMRLLVMLPVRPGELVKMRWEDVDLVSADWVKST
SLAPH
>PP1552 phage replication protein, putative
MLMGREIVGRCPECEKAAIAERQAKQQAEETRLKREAMTRKLGSALIPKR
FAERTLANYRVEHEGQRKALAYCTRYVAAFEEIERTGRCLMLLGRVGTGK
THLGAGMANELMRNTSATAVYRTVGAVLQSIRATYDRHSEQSEADILSSL
IEPSLLVLDEVGVSKEQPSEFELTTLFSIINGRYEQMRPTVVISNLEASQ
LRHAMGERCYDRLREGGGVVVPFEWESHRGKEEF
>PP3502 ISPpu10, transposase
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGS
ALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLS
GDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS
EVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
>PP1624 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPSSGQKPRVTPDSAKVSTASVTWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGMTVADLAGYVRQYWPTL
KVRLLAGEYQPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVELDLEKFFDRVNH
DILMACIERRIRDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP3831 conserved hypothetical protein
MLDCPLPRTLHYVDDSQPGLTRRRWRDRFIYLDADGQRVRDSETLARIAA
LVIPPAYTDVWICADPQGHLQATGRDARGRKQYRYHAQWRELRDQHKYGR
MLAFAQALPKLRTQLEAHLARPGLDREKVMALVVSLLDHTLIRIGNQRYL
RDNRSYGLTTLRNRHVQVKGSTIRFQFRGKRGVEHNVTLNDRRLANLLKR
CMELPGQALFQYLDEDGQRHSVGSSEVNQFLQQLTGADFTAKDYRTWAGS
SLALNLLKPLAWEPESEAKRQVAAIVRQVATRLGNTPAVCRRCYIHPAVL
EHYALGRLANLPKNRVRKGLDPEEVALLLFLQALEEQEDH
>PP2493 RadC family protein
MRLHKLKASESTGTYLVESPVTETEILLMARQLANLRLRRGRALTSPKEV
FGHLQALLGDYEHEVFALLLLDSRHRVIVFHELFRGTLDSASVYPREVVK
TALEHNAAATVLVHNHPSGEALGLRQILLLQSEVRVVTLGCISRCAANEA
SAASLATIETALYRLSTTESRRPVYFFDTVNL
>PP1116 site-specific recombinase, resolvase family
MTNVVAYIRVSTKSQGDSGLGLEAQRDYIQRAAQANDWNVVGEFVDVVSG
KLALEDRPEGAKALTMCKQHNAQLLVAKLDRLSRSVLHIAQLMEQVDFKV
ATMPQADKFQLHLFAALAQQEREFIATRTKEALASLQRRADAGDAVAQQK
VANRAEAQAKGRAVADITAANNIRMSKINTYQTNIEPHLKSCLHDKISTL
QSVADCLNRKGLRTPRGSEFNATAVRRLMLALKVSF
>PP1356 conserved hypothetical protein
MSDGYEHALDSAEGRRTALYSVLGQVPPGKVVSYGQLAELAGLGRAARWV
GRTLGQLPADTRLPWHRVLGAGGRLSLALGTPSGDEQRARLRAEGVNVSN
NRVDMTRHGWRPMEHSG
>PP0650 conserved hypothetical protein
MNGHDPYAYLKEVLTRLPTQRASVIGQLLPHQWMPA
>PP3980 ISPpu14, transposase Orf2
MIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRM
KVLVHDGVGVWLAARRLNQGKFHWPGIRHGCEVELDSEQLQALVLGLPWQ
RVGAGGVISML
>PP0637 ISPpu15, transposase Orf2
MISVPDNLPDDPAALKLLLAQLLAERTVDKGQIVDLKEQVKLLRDRLFNR
KSEQTVESNTPQLALFNEPESQWVPTADDADEEVVAPSKQRGKRKPLSAD
LPRIEVIHDLPEHELTCACGCRKHVVGEQTSEQLDIVPMQIRVLKHVRKI
YGCRGCETAPVTADKPAQLIEKSMASPSVLAMLLTTKYVDGLPLHRFETV
LNRHGIEIPRQTLARWVIQCSEHFQPLLNLMRDRLLESPVIHCDETRVQV
LKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLRLLEGYRGY
VMTDDYAGYNALALQPGVERLACMAHVRRKFVEAQKVQPKGKSGRADVAL
TMINKLYGIERDLKDASDEQRFIGRQERSLPILEQLKSWLDKTHSQVTPQ
SVLGKAVLYLANNWNRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFS
DTPKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPHASSVADYEALL
PWNCSPEMPR
>PP1967 deoxyribonuclease, TatD family
MLVDSHCHLDRLDLTAHQGSLDAALQAARERGVGHFLCIGVSAENAGAVK
ALSEQYADVDCSVGVHPLDLAPGETPALEWLLRELAHPHVVAIGETGLDY
HYEPEAAELQQASFRLHLEASRQTGKPVIVHTRAARADTLALLREANLPQ
AGVLHCFTEDWDMAKAALDLGYYISLSGIVTFRNADALREVARQVPVDRL
LVETDSPYLAPIPHRGKPNLPQYVREVAEYVASLRGASYEQLAEQTTANF
KRLFPLARVA
>PP4318 ISPpu8, transposase
MAKLALEQAIAPEWVDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPS
LHAAARQLDDLPVSLAALYDKISRTEPALLRALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQV
IDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTL
HSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHL
AVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
>PP3586 ISPpu9, transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLL
KMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQT
LNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAAL
EQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVN
RAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFEARSQDRQVRALLRKARKLGYQLVAA
>PP3610 hypothetical protein
MSDERKSLIDRGHLPTRNLAECLAVDQAALVNALTGQLPAALVEHLAASA
EQAQALGLSKKVAAIGLALGKWLEQAAESLRQQVFEQCCTHPSDTVRSWA
AFAQAFLSRSQPAEDALLAQFRFARDEHFGVREWAWIALRPRLAQHLETA
LALLGRHTGDADPLVRRFCIEILRPRGVWCEHIATLKQQPEVAEPLLVPL
LAEAEKYAQDSVANWLNDASKTRPDWVLQLFQRHPPACKASQRIQTRATR
SLRQ
>PP1813 ComEA-related protein
MLTMRNNVLSYLLLPLFASLSFSLSAAPASTMAVPEPVPVVAQAQQAPRL
DLNTADALTLQKELNGIGKAKAEAIVAYREANGPFASVDELLEIKGIGNA
LLERNRDKVMVE
>PP2273 DNA polymerase
MAYADPLLTGGPMQEPLLFDLETNGFLEAVSVIHCLVIEDTATGDVKKFP
PGLIAMGVKWLQEQHSQGRFIGGHNVIKYDIPVIQKLYPGFIVNPALVID
TLVCTRLIWSNIKDTDTGLLKKAVLPGKLFGSHSLEAWGYRLRLMKGEYA
TEFKARMGDAYVDGMEWLEFSQEMLDYCVQDVVVTSALWKRILGKNYSAR
ALALEHRVAWLMAAQERNGFHFNREKAALLYAKLAQRRGDLERELKEFFK
FWHAPAGEVLTKKTRRVFIEDPRGNTERRVKLKGQPAFNQVGWFEKYTEG
VRYTKVKIVEFNPSSRDHIADRLTALYGWVPEKFTKGGKPQVDDEVMSKL
SYPPCKLLTEYLLVAKRISQLAEGKQAWMLVEKQGRIHGSVNPNGAATGR
ATHAYPNVAQVPASGSPYGKDCRELFTVPLGWLLVGADASGLELRCLAHF
MARYDGGKYVDILLNGDIHWANVQAMGITSEKRDDHNTLHKLYRDGAKTF
IYAFLYGAGDEKVGTIVFGMVAKAKALGLDYQHLLDVFFNGQDNPDEEAL
KAAGKKLKATFLRKTPALKKLVKAVKEAAKRGHLVGLDGRHVHVKSAHAA
LNYLLQGAGALACKQWLVFLDDELQARGLKHGWDGDYAFCAWVHDEVQIA
CRNEAIAVIVREAAEACVAKAGEAFNFRCPLAGESKMGLNWAETH
>PP4459 transposase, putative
MNSQDIVLSDDEQVELNRRVRSATISQRDGRRARVILLAAQGHSRNEIAE
LTGLSVVSVTRWCKRFQALRLQGLVDLPGRGRKPSLPAEALQRTLEQVTQ
PRIGQPRWSCRSMARVAGISPASVQRIWAANDIKPHLTRTFKLSNDPQFE
EKFWDVIGLYLAPPDKALVLCCDEKSQVQALQRTQPGLPLGIGHIRTQTH
DYVRHGTLTLFAAMDYLQGRLISSIETQHRHQEWLAFLKKINRETPKGLQ
LHLIVDNYATHKHPVVKEWLKRHPRFHLHFTPTSSSWMNMVERFFRDITV
YLRDGSFSSTRELASSITTFLALHNAQPSRYVWSAKGEDILRKIQGAREA
MARENKENVLSETGH
>PP2975 transposase family protein
MKTSRFSDSQIIAILKQAEAGSPVPALCREHGISSATFYKWRAKFGGMDA
SLMTRLRELEEENRRLKKMYAEERLKAEIIQEAMAKKW
>PP3966 ISPpu14, transposase Orf1
MRQRSSYPKPFKAQVVQECLQPGATVSSVAINHGINANVIRKWLPLYRDL
PAAASLPAFVPLKAAPKRPVEASVIIELPVAGQVITVKWPASDPEGCAQF
IRAFAQ
>PP1702 conserved hypothetical protein
MWFKNLLTYRLTQEVPFEPEALEAALASKPARPCASQELTTYGFVAPFGK
GEDAPLVHVSGEYLLIAARKEERILPSSVVNDAVKEKVEEIETEQMRKVY
KKERDQIKDEIIQAFLPRAFIRRSMIFAAIAPRLGVILVNSASAKRAEDL
LSTLREVMGSLPVRPATVKIAPVATMTDWVKSQQAAEGFYVLDECELRDT
AEDGGIVRCKRQDLTGEEIQLHLSTGKVVTQLALAWQDKLSFILDDKMVI
KRLKFEELLQEQAEQDGGDEAAQQFDASFQLMMMTFAEFLPVLFEALGGE
EIPQGV
>PP4013 MutT/nudix family protein
MTWQPHITVATIVEHEGKFLFVEEFKANQHVFNQPAGHLEPNETLPQAAL
RETLEETAWEVELTGVVGIYLYTAPSNGVTYQRVCFAARPVRHHADLALD
SDIVRAVWLTRDELLADPTRWRSELVPRCLDDYLKGPLHSLDLLRD
>PP4937 toluene tolerance protein
MVLQHYFRHYCRSFCSPDDKALFMQCSRLTQVDFDQLTLGAQVLEADSHG
AKVYLLTDGNFLKVFRRKRLISSALLRPYSQRFVDNAARLAQLGIPTLEV
ISQHKLDLPGRTAVLYRPLPGRTLLQMSRDDGFSWDTYLPRLIELIRQLH
RSGVYFRSLHLGNVVVTPDQRLGLIDVADMRFLRPPLSARMIRRNVQHMV
RYIERENLGDRFPLAAFEAALLTR
>PP4420 transposase, OrfB
MFEVTRSSYYAHRHRRRTPDVERLRLRSRVNELFARGRSAPGSRSVKAMM
QEEGEQIGRFKVRSLMRELALVSKQPGAYAYKKATVERPDIPNILNRAFD
VEAPNQVWCGDITYIWAQGKWHYLAVVLDLYARRVVGWALSEKPDADLVV
KALDVAYEQRGKPQGLLFHSDQGSQYGSRQFRQRLWRYRMRQSMSRRGNC
WDNAPMERVFRSLKSEWIPTTGYLTGQQAQRDISQYLMRHYNWIRPHQFN
NGLAPAKAEEKLKTVSGMS
>PP2570 ISPpu9, transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLL
KMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQT
LNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAAL
EQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVN
RAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFEARSQDRQVRALLRKARKLGYQLVAA
>PP1133 ISPpu9, transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLL
KMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQT
LNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAAL
EQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVN
RAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFETRSQDRQVRALLRKARKLGYQLVAA
>PP0565 IPP isomerase type 1 family protein
MAISPTEAAHRAASDRELVTWVDETDQVLGALPRAELRERGLIGRCTFIL
LFNSAGELCVHRRTLSKALYPGYWDVAAGGMVAAGEAYAESAARELAEEL
GIEGAELRFHERFYFDQPDNRLWCAVYSAVSDAPLRLQPEEVIEARFIGL
EQAEQESLSKPYCPDSLAALQRYKATL
>PP3029 DNA cytosine methyltransferase family protein
MTVAQQISLEGAQQHSLPFSRELYVDLFAGAGGASSGGARAYRDPDIAIN
HNPIAIAVHRANHRKTRHYICDIYEVDPLEATGGQPVGILWASPDCRHFS
KAKGGAPRSKAVRSLPWVVVHWVFATRPRLLLMENVEEFQAWGPLNDEGK
PIKSEMGRTFKAFVACLTTGLPADHPDMSEVMDCIGQWVPMDALVRGLGC
NVEWRERRASNAGSPTIRKRLFLIGRTDGRPIVWTKPKRHENPKPGQLPW
RTAAECIDFSDLGKSLFARKRPLVDNTCRRVAKGFWRHTVMAEQPFVLQL
DEQKLAAASLTEFANASTQRTFSAGEPLRTQVAQIKGGHFALAAAHLTHL
THHGDRSGYPVSEPTRTITGANRGEQALITASMITLRKGSTSSGMDHPVN
ALTTGSGHHAVAACHFEQANGGFYKGDGRAAKVPLSTILGRGTNQRLASA
YLVKYYGTGGQWQDMGEPMHTLPTKERMALVTVVQVPAAILPPELLVKAR
KCAHFLHKYLPEHFPDLVDLVLLGEHALVDFTLRMLKAPELKLAQGFSPD
YILDRGLFENQETGHLEWRPINKTDQIRLIGNSVCPDEAEDLIAANAKDL
IDLYQQEAA
>PP1846 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPNPGQKPRVMPDSAKVPAASATWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGMTVADLAGYVKQYWPTL
KARLLAGEYHPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVELDLEKFFDRVNH
DILMACIERRIKDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP3820 group II intron-encoding maturase
MPPVGVAVSLVTVMQKFPTAETVIPNPGQKPRVMPDSAKVPAASATWTNA
EPDTLMERVLAPANLRRAYQRVVSNKGAPGADGMTVADLAGYVKQYWPTL
KARLLAGEYHPQAVRAVEIPKPQGGTRQLGIPSVVDRLIQQALQQQLTPI
FDPLFSDYSYGFRPGRSTHQAIEMARAHVTAGHRWCVELDLEKFFDRVNH
DILMACIERRIKDKCVLRLIRRYLEAGIMSGGVVSPRQEGTPQGGPLSPL
LSNILLDELDRELERRGHRFVRYADDANIYVRSPRAGERVLVSVERFLRE
RLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPRLRVARMSLDRLRDRLRM
LLRSVRARKMATVIERINPVLRGWASYFKLSQSKRPLEELDGWVRHKLRC
VIWRQWKQPPTRLRNLMRLGLSEERANKSAFNGRGPWWNSGAQHMNYALP
KKLWDRLGLVSILDTINRLSRVT
>PP2134 ISPpu10, transposase
MAMSAIPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGS
ALAIEATSTYHMEMAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHD
AALLARFLSNERGSLKAWTPPPAGHREIQVLLRRRAKLVAVRGMLRMSLS
GDKLFASELKRVEEVLERIELSLEKQLRAVIKKAGLSDQMRRVQRLPGVG
FLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSGKWAGRGKLSKRGDS
EVRRLLYNASMSGSRTATWKQYYAHHQARGKKTTQALVILARRLARLAFG
LMRHQADWKPEIYTGGAKPAS
>PP1931 conserved hypothetical protein
MKRFIEGEARTQVTLLPECLDDYVTDENPVRVVDVFVDELDLGALDFAGV
DPAATGRPAYHPAVLLKIYIYGYLNRIQSSRRLEREAERNVELMWLTGRL
APDFKTIADFRKDNGKAIRSVCRQFVILCRNLNLFSESIIAIDGSKFKAV
NNRDRNFTQAKVKARMQQIEQSIERYLTAMDSADRAMPEVAMAKAERLKE
KIETLKQQMQKLKDIETQLLQTPDKQISLTDPDARSMSVGGRGSGTVGYN
VQTAVDDQHHLIIAHEVTNVGHDRGQLSNMAKQARDQIGAESLTVVADRG
YYTGTEIVACEQAGISPFVPKPLTSSSKAEGRFGKQDFLYVSTSDEYRCP
AGQLLTKRYSTWEDGMLMHVYWFSGCQSCAMHKQCTTGKERRLKRWEHEA
VLDSMQVQLEHDPGKMKVRRQTVEHPFGTLKYWMGATHFLTRTLPRVSTE
MSLHVLAYNLKRMMSILGIKGLLKAIKA
>PP2146 helicase, SNF2/RAD54 family
MYQLPDDEAWLRFAREGLPRLREAGWDIDIHRDFAFNLQEVDDWYATIDE
APGHEWFDLELGIVVDGQRHSLLPIVLHLLRSSPELLRPSELARRSDDEP
LLIDLNRGRLDAPALRVALPYGRIKAVMGTLGELYLHEDTAGPSLRMERA
DAARLNEIEGLPLHWEGGEHVRDLGRRLRDARDLQVEPPTGLQASLRPYQ
QQGLNWLQALREMGTGGILGDDMGLGKTLQALAHLLLEKQSGRLSAPALA
VMPTSLIPNWLDEAQRFAPDLRVLALHGPGRSKHFTKLHEYDLVLTTYAL
MPRDLEQLRPQAWHVLILDEAQNIKSSSSKAALAVCELQAGQRLCLTGTP
MENNLGELWSIFHFLMPGWLGDLKRFNQDYRNPIERHGDSERMAHLASRI
RPFLLRRTKEQVATELPAKTEMVHWVELSDAQRDTYEAVRVAMDQKVRDE
IARNGAARSQIVILDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLE
MLEELLSEGRRVLLFSQFTSMLALIEQELEKRKIRYSLLTGDTRDRRTPV
QQFQQGESEVFLISLKAGGVGLNLTAADTVIHFDPWWNPASENQATDRAY
RIGQDKPVFVFKLITRGTVEEKIQLLQQEKAALAASLLDGGQAGQWRLGD
EEIEALFAPLPGKRGR
>PP1555 phage integrase, putative
MKISDAEIRRQAAGQVRDLRALGNHGLYFRFHRSRERGSWYLIHKGKWNL
IGSYPELSAAKVAAALPDIRLRLEAGEGSSLSSWVLTGELLDWFAERMSR
DRSLSAKRKRTAASAIKQHLAPRLGETPLAQIDKALLDRELMWPLQESLS
IDYVRLVFQLLALAFRQAAKLGLISTNPMAGIRFRDFSKAKVTVKPSRLR
GVHLEDLMARMKSTLAHNPQHGLLALMMLCHGTRLGETRMARWSHISLAE
REWFIPAEHTKTGVQHRLPLTDQVRFLLMACREIQLKQGYEGEFLFPGRQ
GKPMSESKASAVFSVMGQGEWTSHDLRKLARTGWADLGVDHLVGELLINH
AMGHNVKVYIQSDVMARKREALEKWHAHLDQKGFASVHGLTGDRSTDSWI
LCEVAGRAGFDGLPVSTISEDSK
>PP4419 transposase, OrfA
MTKQRRTFTPEFKREAACLVLDQGYSHAEAARSFGLVESALRRWVNQLQQ
ERGGITPASKALTPEQQKIQELEARITRLEREKSILKKATALLMSEDLER
IR
>PP3989 DNA-cytosine methyltransferase
MSKNGSECLQWAPSESNPDLEQPKLVSLFCGAGGLDLGFIDAGFDVVFAA
DHDRYAVETYNHNHPGQRASKVDLLETSPEELYKRSVLEPGFEGAIHGII
GGPPCQGFSRANTARCHSDPRNQLAVKYADIVNYFYKHSRIKFFLFENVP
EILAKKNADFLEMLRARLSKNFVVYEKEINSSGFGVAQHRRRYFIAGISK
EIKNKAFTFPDATVNNFRTVEDEISGLPHPVYYSRVAGSEAIPFHPNHWT
MKPKSKRFLTGEMPVGGRSFIKLEWKKPSRTVAYGNREIHVHPDGHRRLS
IYEAMKLQGFPDSYRLMGTLSAQVKQISNAVPPPVAAALAKCFKEFLL
>PP3536 hypothetical protein
MECRLSFNMERREGTTMSELPTTSFLIFHDPHAPYLVETLDPKEVAQLEA
DHEKSKIDDIEQLKAQFLQMEREKMLPKEDQEALYNARHAKADLTDPVSE
WGPWGELRNVSISSVPHDLEPETPESPAEVEALQIKIDALERQARQYALD
PAIESRLDEVVQAVQALSADEDDAQKYIRYTFPRDDEAYWRNYALLVHKI
VSAKFELPDFRYSPSLSPDRFVLIRRDGTLGINMADELKAQPLLKFEVVD
GWSADERWGGYLRVSSSTEKGKYLYTRDTLDEGAFFKNDSLDNDDSGWVE
LTSSEGAKITFCKVGNHYEIWQSLKSEIFGPTTRWLTVVDGRLKFVMEGS
SAKWNIVSTDVD
>PP2114 ISPpu8, transposase
MAKLALEQAIAPEWVDQVFEEHRQRQYSRELLFSTIIKLMSLVSLGLKPS
LHAAARQLDDLPVSLAALYDKISRTEPALLRALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLASTEKRLGALRQERGAARPGFSVVVYDPDLDQV
IDLQPCEDAYASERVCVLPLLAEAKTNQVWIADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQAPMPVATGTVREQSIEVKGGHRWRRVELTL
HSPNDSGDNSLMFWSNLPESISAQQIADFYRRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLAYNVLALLKRSVEQAHRDALPENWEASIYHL
AVQIRGGYEGMQIALPSEYMPVVPMENLAQRLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVSTDRVIKAAKTKRP
>PP2841 site-specific recombinase, phage integrase family
MARLAPSSQQTMRYILQDAADRLGFVDCNIVDVPWHRLEPGHVIALVAAL
RADGFAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLP
PGRNLRRSLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDL
DQVDFEARSLQVVGKGNHQLVKYAPPWAFEKLQAWLELRRQDLPAGAEDD
PFLFNRIRRGNHITRARITKHAIYYIARQRGAQVGVKIMPHDFRRAFITR
VIEEHDLSIAQKLAHHANIQTTAIYDRRDDNERRRAVDRFDY
>PP0972 conserved hypothetical protein
MGKPWFVYLVRAANGSLYCGISDDPQRRFAAHQKGQGARYFKTSPAQALV
YVEQWPDKSAALRQERLVKRLRKSAKEALVASFGGLGEISPCGASADPPR
LSAAP
>PP5398 ISPpu14, transposase Orf1
MRQRSSYPKPFKAQVVQECLQPGATVSSVAISHGINANVIRKWLPLYRDQ
PAAASIPAFVPLKTAPKRPVEASVIIELPMTGQVITVKWPTSDPEGCAQF
IRAVAQ
>PP1324 conserved hypothetical protein TIGR00252
MMAAASPTRAGQAAETQALEYLQGQGLQLLARNWRCKGGELDLVMLDADT
VVFVEVRYRLHAGFGGALDSIDGRKQKRLVLAATLFLQKEAHWGNYPCRF
DVVALQGSHHAGRPLQWLKNAFEC
>PP5397 ISPpu14, transposase Orf2
MIRIDAIWLATEPMDMRAGTETALARVIAVFGAAKPHCAYLFANRRANRM
KVLVHDGVGVWLAARRLNQGKFHWPGIRHGSEVELDSEQLQALVLGLPWL
RVGAGGVISML
>PP4603 ISPpu9, transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLL
KMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQT
LNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAAL
EQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVN
RAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFETRSQDRQVRALLRKARKLGYQLVAA
>PP1532 phage integrase, putative
MAPRPRNPGSKDLPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKA
IAEAVSANMALQVAPPTLSARIAPEPSAPDRKFSEWIVEYFADLKDRELS
ESSMRNLRMRLNRVEKAFGERGIRTLTTMDIADYLSTYVKEGKAQMARAM
RSLLRDLFMGAMARGWVDYNPVEATKAARVKIKRQRLTLELWKAIYEEAA
QPWLKRAMELALITGQRREDIASFVFRDEVDGFLQVVQSKTGARLRISTS
VTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTISKE
FAAARDRAAVKLGLDLGASPPTFHEQRSLAARLHDEEGRDAQRLLGHRSA
KMTDLYRDSRGAEWIDVA
>PP3150 hypothetical protein
MRRPAQATLNPAFHAKSCYRAALISPEVPMFYLPLPSDQADRLASAAVTE
FFTTASVVDAATVLFVQNLPRQPATASADAQERRFAEIVRIANEVEGVAP
GRFQAQVAQQFDREAFAMGLGMLGENGIALLSAEVQYQADEWLDDEGQWN
FQFADRYRQRATPLHPVYLPSLASDLMLSDQQNRLLREFLSGIDESVAVQ
GFAGTGKTFLIHQFARLLEPQRTLLLALTEGQLRALQARVKDAAAYTALT
FGQLADELLNRDLTSNGWRLRDPYRTKLSWRPQEAQVVRWLSIPDIGPLA
ARDVVALCIRAVRTFCHSADTQLQLHHLPWAGPGTSPLDQEVLLEKARLY
WQELIRPSARDIQLPVRDYHRVKLLSLTEHVIDSRYTHVIVDEAHELSAP
MLAVLDRSPQSIITLGDELQNLNGLSPHHGSFIRQRCIDHSLRAGPAMDN
VLNPLIQAHPATIQAAFSGSAEHYTRVSFFDTVMVPEQPTALIVDDEWGL
FGWFQRLTHQGVPFLLLKSARKDFELFVEDCIELYRYGTRPRHPMLFRYA
SWQALEQDKGDDKAFVAVANMLRKGYTPEHFAKAKSRYRWDKAPKLFLGR
VRDVKNMEFARVMVSPELMVAPQVAGNRNERARMLAGLYTACSRARHELI
VPGGMLDWVKDQVRD
>PP4409 site-specific recombinase, phage integrase family
MLTNFFYTKSIYLGKEHHIIRYMDEKNYGRELPPLSLHLRDLINQGYPDN
SIKDSGLHNANFIDFFEEGLKHIEPSKSEVNTLYREYHSYLTVGSASNST
VVRKICEAKPSPMVSTASSKKYHAQVQPFLKSLGNYFQKYKDYCENGLVI
EKPETTLLIESLMKITPTTIRVREREKVAARQQAAPMTAATGNNQTRASY
SSHIPYENNFCKPLDEDRYFPLDKVTDLITKASCYRNSCFYALIAATNAR
NSEADQILWRDINFTSREVFLVNPHTRLNPGDAYRGLSEIERNKLEWKGR
GTPLTIMLEPYASLFFHYLELYILHEYQPSCGHNFVFHCKSGRPQFLCDY
STVVLHQFKNAAKRALPNQQHLASKLGLHSLRHSNIFFLKNYLEHSQGQG
LTDSELLLITGHADIRSLQKYAKVDRELLLEKIAYGNSLRKNGNIKSSTE
FQIQYLEERLAMFKEKLKQQNNQQRH
>PP3979 ISPpu14, transposase Orf1
MRQRSSYPKPFKAQVVQECLQPGATVSSVAINHGINANVIRKWLPLYRDQ
PAAASLPAFVPLKAAPKRPVEASVIIELPVAGQVITVKWPASDPEGCAQF
IRAFAQ
>PP2276 phage exonuclease, putative
MVQNLIDKTGADEALLVFSDKVNWRKTVLPTYKHNRSKTVQPLLRSHLTA
WAQETFPSISKPTLEGDDVCGILLTRARKFGEEIVVASIDKDFKTVPGHH
YNFNTDTFFEVTEEEADYWHLYQTLMGDTTDGYSGCPGIGPVAAKRLLDK
SPTWETVVAAFEKAGLCEEEALVQARVARILRSSDYDFRLKKVKLWSPE
>PP1260 ISPpu9, transposase
MARKPSKQRFTVVHPDCAAIDVGGREHFVAVDPRHENPVQSFTSFTDDLL
KMANWLESLGIKVVAMESTGVYWIPIYEILSERGFDVYLVNARATRQITG
RKSDVLDCQWIWQLMTHGLLRGAFRPDDLTCCVRSLVRQRASKVKDQAQT
LNRMQKAMSQMNIQLANVISDISGVTGMKILRAICAGERDPVQLAELTDR
RIKAGKEAVARSLHGNWRREHLHALTQELAAYDFLEQQIADCDDAIKAAL
EQLPVLQNKPEPSKKPLRSPHRNGAQQTVLHQTLWKVLGVDLTAIPTIGV
DTALVLAGEIGTDLSRFPSSQHFCSWLGLAPPTRISGGHRLAGGGPKIVN
RAAQALKQAASNARNDKGFIGASHRARLTRMDTSCAIKATAHQLARLVYN
LLTKKQAYVEQGLEEFETRSQDRQVRALLRKARKLGYQLVAA
>PP3912 DNA-cytosine methyltransferase
MPITYGSVCSGIEAATVAWHPLGWRAEWYAEIEPFPCAVLAHHYPATPNH
GDMTRLAAMVLSGKIPAPEVLVGGTPCQAFSVAGMREGLADPRGALTIKY
VELLDAIDHVRTRRGQPEAACLWENVPGVLSDKGNAFGCFLGALVGESEE
LQPPGGKWKDAGCVYGPTRTVAWRVLDAQYFGLAQRRRRVFVVASARAGF
DPLEVLFEREGVRRDTPPRRGEGQDLAGRAPFGPALQCGCGWIFGLDLGQ
YGCPNCEGDEGPAVEVLAGVPAYGGHSLQGDVSQAATLTAKDTRLDMESE
TFCIAPTITGGARKSGGYSPDDIPMVAGTLQANGKAAGSATQQDAENGML
VVHGTQDPDVLHNLVHPLGRNSGQENALLAFSCKDHGADAGDLAPTLRAM
NHSASHPNAGGQVAVCITGEITHTLKAEGFDASEDGTGRGQPIVAHAIQA
GALRENPASGPDGVGVQADHAYTLEARAEVQAIQTNAQVRRLTPRECEWL
QGFPGDHTRIPYRGKPADECPDGPRYKAIGNSKAVFVVRWIGRRIQQQLE
RLA
>PP3964 ISPpu14, transposase Orf3
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIQNDEILIEQFKFEI
ALLKRHKFAKRSEQISPAQSNLLDDLLDTDLEAIEAELKQLLPDAPQAEP
RQSPKRAPLPPQFPRTVIRHEPENTQCVCGCQLQRIGEDVSEKLDYTPGV
FTVEQHVRGKWACRQCETLIQAPVPAQVIDKGIPTTGLLAHVMVAKFADH
LPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLNQGVI
HADETPVQMLAPGEKKTHRAYVWAYSTTPFSGLKAVVYDFSPSRAGEHAR
NFLGDWNGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQL
AEQALHSISGLYEVERQARDMSDEERWRIRQELAVPILKKLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRS
NWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQRASEI
GQLLPHQWVPA
>PP4029 NADH pyrophosphatase, putative
MSARWTTAVLDPQMTGGLAVARSPEGFLVDANGALFPRDWLKRQDLDVLC
EHGIGHFDGQPVFLLELRSATDVPGCSWRGLRAFMLEGDFDTYKVLGYAA
QIGTWAREHRFCGSCGQPMTQIRWERAMYCQPCDLRSYPRISPSMIVLVT
RGDEILLARSPRFVTGVYSTLAGFAEPGESAEDCLVREVREEVAVEVKNI
QYVGSQCWPFPHSMMLGFHAEYAGGEIVMQPDEIEDAKWFSVHDLPPLPA
GRSIARYLIDLYVARRLGCDIPAFPS
>PP4564 lipoprotein, putative
MPLRLPKALLIAIGFALALAACSRIDLAYRNLDRLVPWSLSDYLDMNREQ
RALLDDRLREHLAWHCKTQLPGYLDWLDRLRDMVADDQVTDQALQQSTRE
VREAIGRLAEEITPSATELLRGMSDNQVAQMREAFREDISERQKQYVDTP
LPKQMARRSERMEKRLTPWFGELTAVQKQRIQAWSQALGDQNREWIANRA
HWQQQLLLAMNQRNDSSFEPRLATLLQRKESLWTPEYRAAYRNSEQQARS
LLVDLVRQSTPQQRRFLQERLGKVRTHLSEMKCLKA
>PP2091 serine/threonine-protein kinase, putative
MSLQLSFAQASATGPRAENQDALRLVTPAPELAASKGYLFALADGVSQCT
DGGLAARASLQALALDYYATPATWSVAQALDRLLLAQNRWLRAQGSGQPL
LTTLSALVLRGRRFTLAHVGDCRVYRWHEGNLQCLSEDHVWDQPGMQHVL
KRALGLDQHLLVDYLEGELQPGECFLLLSDGVWASLGEQHIQAVLREQTD
LQLAADTLVASAHLSGSKDNASALLVQVEQLGTANLGDTLAQLQQWPVPG
PLREGQVIDGWQVETLHAHSRQSLLYKVRDSQNQPWLLKTLPTAREQEPG
AAQGLLLEEWFLRRIAGRHFPELHAASQRQHLYYVMREYPGQNLAALLAE
QGPLPLPQWLEVARQLLQAVGVLHRRNLLHRDIKPDNLHLGRDGQLRLLD
FGLAYCPGLSEDPLHELPGTPSYIAPEAFDGHPPSPRQDLYAVGVTLYHL
LTGHYPYGEVEAFQRPRFGQPVNAARYRPDLPEWLQHNLLQAVASDPAQR
FETAEHWLLLLERGDRQELPSRPRPLLEREPLKVWRTLALLSLLINLILL
FTLLKG
>PP3985 ISPpu13, transposase Orf2
MISMPENLPDDPVLLKQLLEQMIHERASDKSKIVHLEEEVALLRQRLFGR
KTEQTGDAATPQLPLFDEAESLAEPLDEADDEEVVAPTKRRGKRKPLPAD
LPRIEVVHELPEHELTCACGCRKHAIGEEVSEQLEIVPMQIRVIKHVRKV
YGCRDCESAPVTADKPAQMIEKSMASPSVLAMLLTTKYVDGLPLHRFEKV
LGRHGIDIPRQTLARWVIQCSEHFQPLLNLMRESLLKSRIIHCDETRVQV
LKEPGREPSSQSWMWVQTGGPPDRPVILFDYATSRAQEVPVRLLDGYRGY
VMTDDYAGYNALAAQDGLERLGCWAHARRKFVEAQKVQPKGKTGRADIAL
NLINKLYGVERDLKDSDDEDRKVARMERSLPLLTQLKNWVEKTQPQVTTQ
NALGKAIGYLASNWSKLERYVEHGYLPMDNNAAERAIRPFVIGRKNWLFS
DTPRGATASAQLYSLVETAKANGQEPYAWLRHALERLPQAASVEDYEALL
PWNCKPKIHS
>PP3893 phage DNA helicase, putative
MIATRPLVAEEAEFGVIGSLMHQPSLIETIGAKISPMHFHQQDAAELFSM
ILAARSAGRPADPVSLADIRPTLSNGEMTLVRAAEIMRNTVSVANANEYA
RIVVERSKARVVNDLGQTIINLASQARPIAQIIAEVQEAALSLNSEDDEP
DVITLAEALGPVIDEMDDRFNGRGINGLSTGLPDLDDLIQGLRGSHVIIV
AGRPGTGKTTLGLGIAEYLTIRESKSALVFSLEMAGKELAKRSLASASSV
TTGNIDTGKAMADGEKIQKITAAVGRMRDADLRICQKGGLPLSRIRNIAR
FQHKAKPLDLIVIDYIGLIAPEPGSRQQNRNLELGAISRGIKAMAKELDV
PVIVLAQLNRGIETRTAKKPQMSDLRDSGEIEQDADIILIAHRDADSDLG
QSGVTEIDVVKHRHAPVGHCLLQHQGEFARFANYAGAREQQQAAAQPARR
SSRSMLNNFQPGERF
>PP3113 ISPpu13, transposase Orf1
MMRPDAKVEKVYLYPKPVDFRKSIDGLAALVELDIKVAVFDPVLFVFLNK
PRNRVKILYWERNGFCLWLKRLESERFKTSPDPTDVAIVLTVQELNWLLD
GFDLWRNRPHQVLTPRYVA
>PP4968 DNA ligase, NAD-dependent, putative
MPYLLLFALLFVLNTPLARAASCPHWNPQQAKAEVAQLRATLARWDEHYH
RQGIALVADELYDQSHERLNHLQQCFAVGTSPSPLASARGPVPHPVPHTG
VDKLADRQAVARWMTGKTGVWVQPKVDGVAVSLTYQQGRLVQLTSRGDGV
HGHDWSRHIPQLGAVTRQLPEAVDLHLQGELYLRLDEHVQAKAGSANARG
TVAGLLARKQLTGAQGNAIGLFVWGWPHGPEQQAERLAQLARLGFPDSQL
YSIAIDTLEDAAHWREHWYRSALPFATDGVILRQGSRPPAERWQAKAPYW
IAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLG
SLARWQRLDIRPGDQVAISLAGLTIPRLEHVVHRAVERQPITAPAPDQHH
AHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPGTWRRLVEAGLVTSM
TDWLQLDAERLQQAPGISRLTATQMLGSFDQARSRPFDQWLRALGVPIGK
HLPLTGNWQALASRSAGQWQTVPGIGAKRSRQLVEFFAASEVQAIAAQLA
EAGIEGFRTPPQRIEQ
>PP1541 methyltransferase, putative
MAAYYNEIDPYAAQWLRNLIAAGHIAPGDVDERSIEDVHPDDLKPYTQCH
FFAGVGVWSYALRRAGWPDDRPVWTGSCPCQPFSAAGAGAGFDDQRHLWP
HFHWLISERQPAIVFGEQVASKDAEPWLDLVQADVEALAYAFGAVAFPSA
GVGAPHIRDRTYWVAHAAGQRQHWRRAGYSGDGRDATRIKLERLRDADGL
GNPGRPRLDQRIGIAGVLGGAPGAFPGQAAERTSIHAGARPPGPVNGLWA
DADWLFCRDGKWRPVEPGTFPLAHGATSRVGRLRAYGNAINAEAATHFIA
AFLETS
>PP4439 ISPpu14, transposase Orf3
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSKKIQNDEILIEQFKFEI
ALLKRHKFAKRSEQISPAQGSLLDDLLDTDLEAIEAELKQLLPASSQAEP
RQSPKRAPLPPQFPRTVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGV
FTVEHHVRGKWACRQCETLIQAPVPAQVIDKGVPTAGLLAHVMVAKFADH
LPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLNQGVI
HADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHAR
NFLGDWNGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQL
AEQALHSISGLYEVERQARDMSDEDRWRIRQEMAVPILKTLHDWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRS
NWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQRASEI
GQLLPHQWVPA
>PP0568 conserved hypothetical protein
MQRPGSHRLRGGRVSESGRFYLLTTTTRDRTPLFKDFRFARTVIQQLRFS
DERKACRSLAWVLMPDHLHWLIELGPVSLGRLMCEFKSRSSCALYKAGAE
RRHIWQTSFHDRALRREEDVRAVARYIIANPIRAGLVRRAGEYPHWDCVW
L
>PP4445 transposase, IS3 family
MRLKYAFIKKHSTDYPVRRLCQTLKVHPSGYYAWLAEPQSARAKEDQRLL
GLIKQAWLESGGVYGYRKIHDDLRELGETGGRNRVGRLMQAEGLRSQTGY
RRRPGFYGGKSTVASPNHLARQFKVSEPHKVWVTDITYIRTYEGWLYLAV
VLDLFSRQVIGWSMKPRMCSDLAIDAMLMAVWRRKPQQQVMIHSDQGSQF
SSSDWQSFGRGRDGSYLPPPAQIRTCGTTAYGSCLGYVTRSDPQGKGVHF
WA
>PP3181 site-specific recombinase, phage integrase family
MTDIERYLRAATRDNTRRSYQAAIEHFESHWGGFLPATAESIARYLADHA
DQHAVSTLRQRLAALSQWHVAQGFPDPTKAPLVRQVLRGIRTLHPTPPKQ
AAPLLLQHLQTAVTCFEEEARQAREHHDLAALRRARRDSALLLLGFWRGF
RGDELARLRIEHIQAQAGVGITLFLPRSKGDREALGVQHRTPALKALCPV
TAYLQWLEVAGIAHGPVFRKLDRWGNLGDNALNSNSLVGLLRRMLERAGV
PAALYTGHSLRRGFATWATANGWELKSLMSYVGWKDAKSALRYIDSAQRF
GDLAVLPASQVQPLIP
>PP3118 conserved hypothetical protein
MLWACILLPQLALDTVLRERDDPDTPLVLIGGPTQRRVLQAVNPAAAALG
LRAGQTLTAARALADGFTCVEADPKRIDQVQQLLAAWAYRFSAQVSLHYP
RALLLEVGSSLQLFGPWPLFEARLRQELAELGLRQRIVLASNPVAARMLA
NGHDGLAVGDVDATRAALLGMPITRVGLPAEAAEAFARMGLHQLGQVLAL
PRDTLARRFAAQVQLHLDQLLGLRNLGLDFYQPPDRFETRLELNFDVESH
QALLFPLRRMLNDLAAFLAGRDCGVQRFCLHLEHAEGPDTLLKVGLLAAE
RDAAMLFELARGRLEPLRIPAPVRNLRLVAEDLPPFVPQHQALFDPRAQQ
AQPWAQLRERLRARLGDEAVKGLGAAADHRPECAWHLAEQGAQGNMPVAP
GSRPGWLLSAPIALDDAAYQVQGYAERIESGWWDGGDVRRDYYRIETRDG
LRGWAYRDLSQAGPLWLQGWFA
>PP4746 ISPpu15, transposase Orf1
MMRPDSKVEKVYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNK
ARNRIKVLYWERNGFCLWLKRLEAERFKTSPDATDEAIVLTVQELNWLLD
GFDLWRNRPHQVLTPRFVA
>PP1453 MutT/nudix family protein
MLDELLRRMSNHQPASLETDRRFPEAAVLLPITRSEAPELVLTLRAKGLS
THGGEVAFPGGRRDPEDPDLVFTALREAEEEIGLPPGLVEVIGPLSPLIS
LHGLKVTPFVGLIPDFVEYRANDAEIAAVFTVPLEFFRQDPRDHTHRIDY
QGRSWYVPSYRYGEYKIWGLSAIMIVELVNLLFDAGISLHHPPERHIEN
>PP4443 ISPpu14, transposase Orf3
MTFSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIQNDEILIEQFKFEI
ALLKRHKFAKRSEQISPAQGSLLDDLLDTDLEAIEAELKQLLPASSQAEP
RQSPKRAPLPPQFPRAVIRHEPENTQCACGCQLQRIGEDVSEKLDYTPGV
FTVEQHVRGKWACRQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADH
LPLYRQEKILGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLKQGVI
HADETPVQMLAPGEKKTHRAYVWAYSTTPFSALNAVVYDFSPSRAGEHAR
NFLGDWSGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQL
AEQALHSISGLYEVERQAREMSDEDRWRIRQELAVPISKTLHEWMLAQRD
LVPNGSATAKALDYSLKRWVALTRYLDDGSVPIDNNQVENQIRPWALGRS
NWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTQRASEI
GQLLPHQWVSA
>PP0638 ISPpu15, transposase Orf1
MRPDSKVEKVYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNKA
RNRIKVLYWERNGFCLWLKRLEAERFKTSPDATDEAIVLTVQELNWLLDG
FDLWRNRPHQVLTPRFVA
>PP4024 ISPpu15, transposase Orf1
MMRPDSKVEKVYLYPKPVDFRKSIDGLTALVELDIKVAVFDPVLFVFLNK
ARNRIKVLYWERNGFCLWLKRLEAERFKTSPDATDEAIVLTVQELNWLLD
GFDLWRNRPHQVLTPRFVA
>PP3679 hypothetical protein
MTQFKVWVETLAGEGTSVVFVGFNASFDWSFVNYYFHQFLGENPFGIAAL
DIKSMYFGTSECTWKSTRSSEIEKVVKPESSGDHDALHDAVYQAELFRLI
REKLIGR
>PP1118 recombinase-related protein
MSKVFSYIRFSSAKQSAGDSYARQVKAAKAFCDENGLEMADPREYLFFDK
GRSAFKGKHLDDTGELARFLSYVEDSTIPPGSYLVVESLDRLSREKVRDA
LPRFLDLLAKGINVYTSVDKRLYTKDYNELDLIISIISMSRAHEESAVKG
GRVSSAWREKQKAARTTGKPLGKLRPLWLDVTPDGYVLNPDKAAVVRRIF
DLSTKGHGSRIIAATLNQEGIPAFSAGRKNFSGLWGFSTVRHILDSRTTL
GEYQPHIFTDGKRTPDGDPIKDYFPSVVTEDEFYLAQAARTSRKTHSVTK
ATTNFNVLAGILNCYKCGSAMHLQGQRGRKYYKCSKTTRGLCDAGIISAP
RTEQVFKEILTKVDSLSLVQDSSGSLQKSLQIVEGRIASLKARQDDAEAS
HAEFPSRITAKLLHELEADIGALESERTAIAEQLASDKVMSKHDFFEKLD
LVSFEGRVAANNLIKRLGLFIFASKNGRTDETYWVSKNNAIPLPFSAETP
NLLFYLMHRGKEIQFEAMYDEYVDLQLTQGDLNEVEAAFAKTESWDSLPP
HMLAMWKARHIIK
>gid:164693  PP0014  transposase, putative
MGWWALTLIGQLTLTPRSSCKGGTVMQTFSLRVKLVVIVRGVLMVLEKRL
IDRKLLFFDELGEPTKLSEKEFYEAYEKREIEISADQPYLGKVPYVRNVP
PDISCFPKKHGDEALRRRKYLDDLTKRGKYKLPGDEDMIKKLRDIAKKIG
DACAPSVSTIRRWAAKYIGQNVVKLIPQHAKKGRAAAIQGELEVILEGVI
NKTYLQDTIPAVSVVVSEFEDQIKERNKSRLPSDQLKIPSGMTVRRYIAK
LDPYLVDKERLGKHAADKKHRVAAGVLRVHEILERWEIDHTLLDVQLVDE
TSGLCIGRPYLTIVLDRFSRMVMGYLLHLSAPNTETVLRVIERSIRPKAE
LLKRFPKVRNEWWARGLPARIVPDNAAEFHAGDLIMGFNELGIEIMYPAS
RAPQRKGAVERFFSTQNLGLIHNLPGTTFSNIQQRGDYDSEKNACFTLPQ
LEAVVVKWIVDGYHQTPHRGLDNRTPAQVWGTSEANHVISLPVDLDSLEC
ILAKRASVKVHHYGIEVAKVGYHSTELAELRMRLADGEKVNVRYRDEAGH
VWVHDRFRNLFFKVPAKDERMAGKSREVWKAAEKALREKYNEQPSFEATH
RCYQEIMEDADEARRSQTLRKRRAAAIAKIDKEGRVTESTPPPKVLAEVE
WTGDSIPNIPPAAFKVSVRRPAGSSKP
>gid:164700  PP0020  hypothetical protein
MIMADTPEQEIVSAISAAGWLQGDTVSGDALIEHISEEVLKGQFEGVAPA
YWMLASHSCTVHARNLCDAPWIEWIAVKVKKKAFDKQLHALNPRTLHLQH
AEKQVLELKIHKRVWTKRAVLPTLHRNPVITLSEENGQYFSYWMSHHYNR
IAMPDELVNRLKADQGDDGMKGIAVLVDDFLHQNNQFFASAWVSFNPKGE
IRDPAEPYEVVFRFLTKREHARRANELHDQLNELLGVARNLNDGLYFGGA
DVTVLQDFTMLDAEDFVRYNLHDWLSVGDTDEDEEGADDAD
>gid:164749  PP0069  smf protein
MPSHHSSPCPPAELEARLRLHRLPDAGLRRFRTLLEAFGSASSALSAPAS
AWRALGIPQATIDARRSAEVRDGALAAMAWLERPGQHLLMWDGPGYPALL
AEIDDAPPLLFVAGEPALLDRPQLAIVGSRRATPPALDTARAFSRYLAQA
GFTITSGLAVGVDGAAHRAALQAGGGTIAVLGTGLQKLYPQRHRDLAQAM
IDNGSALVSEYPLDAGPLPGNFPRRNRIISGLSLGVLVVEASLASGSLIT
ARLAAEQGREVYAIPGSIHHPGAKGCHQLIRDGALLVETVEQILESLQGW
QNLPPAVVDKFDHPLLALLHAAPQTSESLAHCSEQPLADVLAQLTELELE
GRVSNEAGRWFARAG
>gid:164779  PP0099  conserved hypothetical protein
MIPPVPQKGRGTAHNPHNRFAPGHSVAEDDGWYQEVPQTQGTEVRIETAK
SVISRNTSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWDLSPGLDFETK
LIAKTNAAEVLAQQLSKPGYVCAPINLGSNTDPYQPIEREQLLTRRLLEV
LLRFRHPVTIVTKGSLVLRDLDLLAEMARQRLARVMISLTTLDDGLKRVL
EPRAASPGARLRAIRVLREAGVPVGVLCSPMIPMINDSELERLLEAAKEA
GAQSAAYMMLRLPLEVAPLFEQWLQDHYPQRAAHVLSLIRQSRGGELYDS
RFGVRMRGEGVFAELLAQRFAKAMKRLDFEGREAQELDCSAFCPPGGQMA
LF
>gid:164796  PP0116  lipoprotein, putative
MKPFASRYLLVAAFSLILAACSNAPVEQATAPAQADAWQQLQQNIASNEL
ATAEDQLAALQAQSPDDARLEQYQRQLAEAYLQRSQIVLQKGDVNAAATA
LARARALMPQAPAVTGGDAVTQARKAELEKAEAALKAAEAKPEARIIDPT
APSTVVALKTTDSRALRRQLDDIAADVVSYQCEVVFQVPRTEDAPWLKTL
LEKRVRKIDSGFELKQKHQIQRSLPAQVVLVPHQQ
>gid:165018  PP0334  ISPpu11, transposase
MELCTTICVDLAKQVFQLAGEDATGRVIYEDRIKSRQAFHDFLLRLPTTV
AVLMECGPGAQAWARLLQAKGNPVRILPAQRVAEHRSGAKNDRNDCYAIL
RAGRDTSIASIPIKSTTALAIQALHRIRRGNIKRHTALGNQIRGLLLEHG
VSMPQGDAAINKHVPQALEDASLPLPDLLRELLDELLMDWLSLGERITAL
SRRLEATAQEDKVAQRLITIRGVGPIIATAIVAKQTDPSRFASGRMYSAF
FGIVPDQHSSGNKIRLGKMSKRGDGYIRSLMIQGAHSVLSQLRPDSDQPD
DRRLLRWLSRLGRKEAAIRLANRNLRIIWALLQSDQVYQRKPNEKPEAAM
SL
>gid:165029  PP0345  heptose kinase WapP, putative
MASWTLAPGYEHLAADFGSLDAVFALQGERLTRDPLSEVVRIERDGINYY
VKRYTGAGKHMRRYLGRPRIKAEWQNLKQFAKWGIPTAEVVAWGLERNGL
AFGRGAMITRELPHTEDLSALAEHNDARLADRAWVDHVSRQLARHTRVMH
EHRFAHNDLKWRNLLVDDQGTLFFIDCPTGDFWRGFMWRHRMIKDLACLD
KVAKYHLSATQRLRFYLQYRGRDRLNVRDKKRIHRVLGFFEGRE
>gid:165030  PP0346  heptose kinase WapQ, putative
MTDYLASADLALLKRHGLDNFEALWALQLDAVDEPNTGRGGWSSVFRLEL
EGKGYYLKRQSDYLTRTLHRPFGEPTFAREFRNISRYQKLRIPALQAVFY
GERKQGGKHRAILMTRALDEWADLDSLLAQWPRLGEAERTGILQACGQLA
RTLHSAGQVHGCFYPKHIFLRQRREGWDAQLIDLEKTRPLLFGMRDRLKD
LEPLLRRAQAWRVQDVRTLLATYLGQPADGALVDTWLQRLTQRRREKEAR
>gid:165031  PP0347  conserved hypothetical protein
MRLSELKDAGRSPTLPLSITLVDAAGSADLQLLTLLRVLPGQRYVGAGVW
RGTPVLAKLLVGGNAARHFQRELQGVKLLAEQGLTTPTLLADGLKEGEGG
WLLFEFLDGAQSLADAWAAVENLPVLADEQHLVLGEALTAVAHMHAQGLW
QEDLHLDNLLRHAGKLYLIDGAGIRAETPGQQLSRPRVLENLGVFFAQLP
KRLEPFIEELLVHYLLANAEHALPLEALQKQVDKVRNWRQKDYLDKAGRE
CSLFSVQRTLSGLQAIRRSEVEAMQPVLEQADALIDKGHLYKTGGAASVA
RIEVNGRQLVIKRYNIKNTAHWFKRFWRPSRAWHSWIEGHRLEFLDIATP
RPLAVLEQRVLGLRSRAYLVTEYVDGPDLTACFAPHVESGDAPEEQVDAL
VHVMQQLIRERISHGDFKGHNLFWHNGQWSLIDLDAMCQHATQLSFAPAY
ARDRARLLRNWPTGSALHQRLDRLLPKLVD
>gid:165037  PP0353  exonuclease
MSLFAWLRPSAPELDHTTRQRLARLPKPVPLGVCTLREQRWVVLDLETSG
LNPNRDQVLSIGAVAIEDGAIDFAQQFERTLHRPLQKTNASVLIHGLGPS
ALAAGCDPAEALLDLLDFIGNSPVLAFHAPFDQRMLARALKESLGYRLQS
PFLDIAELAPMLNPDTVLREAGLDDWVARFGLQVEERHHASADAQVTAEL
ALILFSQARRQQLDSPLQLEQRLRGWRRRKMQSHGL
>PP0706 ada, adaptive response regulator protein
MNLYTTPDQRWQAVESRDTAATGHFVYAVRTTGVYCHPGCKSRQAKRMNV
EFYDTAAAAEAAGYRACKRCISKASATRHSQLVTHACRLIETSDPVPSLG
QLSARLAVSPFHLHRLFKAETGVTPKAYATAFRARRLRAHLEDDQRSVTD
AIYNAGYNSNSRFYESADQRLGMRPRQYRAGGAGATIHFALGQCSLGAIL
VAQSDKGICAILLGDDPEGLLHELQDQFPKAHLIGGDSAYEQKVAEVIGF
VEAPSLGLALPLDVQGTAFQERVWQALREVPAGSRVSYTDIAERIGAPKA
VRAVAMACAANRIAVAIPCHRVVRRDGDISGYRWGVERKQQLLKRETALS
>PP1282 algX, alginate biosynthesis protein AlgX
MTPHLMKLLGLSAALLAISQGVRAEDVKAPTFSAEPCCQLCPEAHDASRY
TTRYQQNFTTLVQAQGDWLFRTREDLRTEFNTTPAGYKRLQQVHDAFKKR
GVELVVVYQPTRGLVNRNMLNPAEKAAFDYQKALGNYQAMLKRFASMGYN
VPDLSPLTNEQLAAADQGKDFYFRGDQHWTPYGAERAAKIVADTVHKMPA
FEGIPRKEFETRKSGRMGKTGTLHNVAGQLCGTSYAVQYMDQFATEPKGA
SGGDDLFGDSGNAQITLVGTSHSGKNYNFSGFLEQYIGADVLNVAFPGGG
LEGSMIQYLGSEEFQKNPPKILIWEFSPLYRLDQETIWRQILGLLDDGCD
DRPALMSASTTLKPGKNELMVNGKGGVIKDLINRNLQMDVKFEDPSVKVL
QATLWYLNGRHEDIKLEKPETSDTDGRFVFQMREDEDWASQRLLAFEVQG
PESGTQKVEAKLCKRNNFAVPAQTAQAGQ
>PP3400 alkB, alkylated DNA repair protein AlkB
MIQSDLDLFGPQPQRLASHTVLLPGFALAETEALLDALRPVLRAAPFRHM
YTPGGLRMAVALTNCGTLGWVSDQHGYRYSPSDPVSGQPWPALPPVLLAL
ASRAAAMAGFDGFVPDACLVNHYLPGTRLSLHQDRDEQDFGQPIVSVSLG
LPAVFLFGGLQRADKAQRIALSHGDVLVWGGVDRLRFHGVLPIKPGVHPR
LGERRINLTLRKAGA
>PP5292 crc, catabolite repression control protein
MRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFELDDPAFQL
DGYFLYACDAEVPAQGGVALYSRMQPKAVITGLGFETADRYGRYLQADFD
KVSIASLLLPSGMNGDEDLNQKFKLMDDFAKYLDKQRRKRREYIYCGSFY
VAQQKLDIKNWRDSQQSPGFLAPERAWMDAITGEMGYVDALREVSREGDQ
YSWWPDNEQAEMLNLGYRFDYQILTPGLRRFVRNARLPRQPRFSQHAPLI
VDYDWTLTI
>PP4952 dbpA, ATP-dependent RNA helicase DbpA
MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQA
KTGSGKTAAFGIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARA
EDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPGRIQQHLDKGTLVLDGL
NTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGIKQLAAD
FMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAF
CFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA
TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAP
AEGHRAQAIEALQNSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKL
RPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQRLNSGK
IKGRALKVRII
>PP1203 dinP, DNA-damage-inducible protein P
MSLRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEA
RAYGVRSAMSSRHALKLCPDLLIVKPRFEAYREASREIHTIFRDYTELIE
PLSLDEAYLDVSDSQWYSGSATRIAEDIRRRVARTLHITVSAGVAPNKFL
AKIASDWRKPNGLFVITPNEVETFVAALPVARLHGVGKVTADKLTRLGIE
TCLHLREWSRLALVREFGSFGERLWGLARGIDERAVHNDSRRQSVSVENT
YDTDLPDLASCLARLPELLDSLNERIARMDSSYRPDKPFVKVKFHDFSQT
TMEQAGAGRDLESYRQLLGQAFARGGKPVRLLGVGVRLRDLRGAHEQLEL
FPPK
>gid:164689  dnaA  chromosomal replication initiator protein DnaA
MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDW
VNEKYLGRLLELLGENGSGIAPALSLLIGSRRSSAPRAAPNAPVSAAVAA
SLAQTQAHKTAPAAAVEPVAVAAAEPVLVETSSRDSFDAMAEPAAAPPSG
GGRAEQRTVQVEGALKHTSYLNRTFTFDTFVEGKSNQLARAAAWQVADNP
KHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMV
KALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGG
QQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAD
QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRE
SLKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAM
ALSKELTNHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNL
LRTLTT
>PP4873 dnaB, replicative DNA helicase
MNEITTSEQLDLQTAALKVPPHSIEAEQAVLGGLMLDNNAWERVLDQVSD
GDFYRHDHRLIFRAVHKLADANQPFDVVTLHEQLDKEGLSSQVGGLAYLA
ELAKNTPSVANIKAYAAIIRERATLRQLISISTDIADNAFNPQGRNAAEI
LDDAERQIFQIAEARPKTGGPVGVNELLTMAIDRIDTLFNSDSDITGIST
GYTDLDEKTSGLQAADLIIVAGRPSMGKTTFAMNLVENAVLRTDKAVLVF
SLEMPGESLIMRMLSSLGRIDQTKVRSGQLDDDDWPRLTSAVNLLNDRKL
FIDDTAGISPSEMRARTRRLAREHGEIAMIMVDYLQLMQIPGSAGDNRTN
EISEISRSLKALAKEFNCPVIALSQLNRSLEQRPNKRPVNSDLRESGAIE
QDADVIMFVYRDEVYHPETEHKGVAEIIIGKQRNGPIGFVRLAFIGKYTR
FENLAPGMYNFDDDE
>PP1606 dnaE, DNA polymerase III, alpha subunit
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLV
KFYKTAMGAGIKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELI
SRGWTDGQRNGLVILQREWIAPASEGLIALSAGKEGDIGMALLAGRQDEA
EALLQDWMGMFPERFYVEVQRTNRARDEEYVHAAVALADKLGAPLVATND
VRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSAEEMAELFS
DLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFI
KWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVS
MPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARV
QGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILRDFLKGDEDAREIWDMA
LKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQFDKDDVEA
AGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMV
DDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMA
GYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLV
EKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVV
VLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAIKGVGEGPVEA
IVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADV
DVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIV
DLKPSRETQTIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAF
MAAQSLLQTDAMVVVEGEVSNDDFSGGLRLRVKQVMTMEDARTKLAESLR
LKVAHDALKGDRLKWLGELITRHRGACPITLEYTGSDAKAMLQFGEQWAI
DPADGLIQALRDQFGRENVFLQYR
>gid:165072  dnaG  DNA primase
MAGLIPQSFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSF
TVSPDKQFYYCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPRE
QGRRDQKPRQPTDSPLYPLLDAASEFYRQALRSHPSRKAAVDYLKGRGLS
GEIARDFGLGFAPPGWDNLLKHLGADTLQQKVMIDAGLLIENAESGKRYD
RFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGL
YEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF
RVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDPDS
LVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAP
LIEKIPGANLRQLMRNRLKEITGLDPQQVEQLAQQAPATSSMPDYDPGYD
YDAMASYTPDYGDMPQHDYAPVHQEQAWKPNKGGSKKPWSDKPWDKNRKG
GKPWQQRDEAPPRVPAPVEPPTLAALRTLLHHPLLAGKVEDASHFADEEH
LYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGRLLRALAEKEWLIVAD
NLEQQFFDTITSLSARQRERSLEQLLRKSRQSELTSEEKTQLLALLSRNV
PAQTPTSSGA
>gid:164690  dnaN  DNA polymerase III, beta subunit
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLE
VELVGRVQLEEPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLLVK
AGRSRFTLSTLPANDFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQD
VRYYLNGMLLEVSRNTLRAVSTDGHRLALCSMSAPIEQEDRHQVIVPRKG
ILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLP
KGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQANNPEQ
EEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALL
QEAGNDDSSYVVMPMRL
>PP4141 dnaQ, DNA polymerase III, epsilon subunit
MEQQQDKRFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQ
PDRESDEGAINVHGITDAFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFD
VGFINNEFALLGQQDRADISQHCTILDTLLLARSRHPGQRNSLDALCKRY
DIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLAGNGADTEEDGQGAG
GSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGGPSLWQALTETP
AG
>PP4269 dnaX, DNA polymerase III, gamma and tau subunits
MSYQVLARKWRPRSFREMVGQTHVLKALINALDNQRLHHAYLFTGTRGVG
KTTIARIIAKCLNCETGITSTPCGTCSVCREIDEGRFVDLIEIDAASRTK
VEDTRELLDNVQYAPSRGRFKVYLIDEVHMLSTHSFNALLKTLEEPPPYV
KFILATTDPQKLPATILSRCLQFSLKNMSPERVVEHLSHVLAAENVPFEE
DALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAMLGSLDHGQVY
GVLQALLEGDARALLEAVRNLAEQGPDWSGVLAEMLNVLHRVAIAQALPE
AVDNGQGDRERVLALASALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEM
VLLRMLAFRPADTDDAPKPVLKPTGISQATADPAGQVAAAAPVALSPPVA
AVPAEPVAQAPQLEVPAPATADHEPEAEADVELKAEAEAISVPEPVAEVV
DLPWEEPAVAPAPLAAEPAPEPAPAPEPVAPVAPTQAAPAHDEPPFDPSA
YAAVGMERDDEPPLDEDYYGGESDPAGFSYLDELAEHVQEDVSKPAAEPL
PAAKPATGLALQWLELFPQLPVSGMTGNIAANCTLIAADGDDWLLHLDPG
QGALFNATQQRRLNEALNQHLGRTLNLRIELILPEQETPAQAAARKRAER
QQDAVASIEQDPLIQQMIKLFGAKVRQDTIEPVEALASQGQ
>PP2451 endA-1, endonuclease I
MRVSLFAAACLLLTTPLAQADAPRTFQEAKKVAWKLYAPQSTEFYCGCKY
KGNKVNLASCGYAPRKNAQRASRIEWEHIVPAWQIGHQRQCWQSGGRKQC
SQHDEVYQRAEADLHNLVPSIGEVNGDRSNFSFGWLPEQRGQYGRCLTQV
DFKARKVMPRPSIRGMIARTYFYMSKQYNLRLSKQDRQLFEAWNKTYPPQ
AWERQRNQQVACVMGRGNAFVGPVNLKACG
>PP3375 endA-2, endonuclease I
MKSLLYAVTLLFSFTLPALANPPATFTEAKVVAKQKVYLDQASSAMGDLY
CGCKWTWVGKSGGRIDAASCGYQTRKQQNRAERTEWEHIVPAHTFGNQRQ
CWKNGGREHCVDNDPVFRAMEADLFNLYPAVGEVNGDRSNFNYGMVTGNA
GEYGQCTTKVDFVQRTAEPRDEVKGLVARTTFYMFDRYKLNMSRQQQQLL
MAWDKQHPVSAWEKERDRRIAAIMGHANPFVSGERKWTAGYKPVGSGVVE
AVPVNAAKPEAKPSLASAGSVGAVLGNRNSHVYHLSVGCPGYNQVTAKNQ
VTFANEGEAQAAGYRKAGNCR
>PP4821 fis, DNA-binding protein Fis
MTMMTENFVSGTTPVSDNANLKQHLNTPSEEGQTLRDSVEKALHNYFAHL
EGATVTDVYNLVLSEVEAPLLESVMNYVKGNQTKASEMLGLNRGTLRKKL
KQYDLL
>PP1767 gyrA, DNA gyrase, subunit A
MGELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLY
AMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY
LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYD
GTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN
PEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRARSEIED
IDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKD
GMRIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKD
LLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA
SPTPSEAKEALVSTPWESSAVQVMVERAGADSCRPEDLPEQYGLHDGKYF
LSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGELIRILSSAERLM
EVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVVTISHGGYA
KTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV
YWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLD
EELDEAEDTVLEGELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVK
KTPLVQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRF
AESVVREMGRNARGVRGMKLGKGQRIISMLIPESGSQILTASERGFGKRT
PLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVR
TRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIETDEE
GVEAVAPDNENEEAAGADEAPQE
>gid:164692  gyrB  DNA gyrase, subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSI
DEALAGHCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL
HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHG
VPQAPMAVVGDSETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNS
GVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDD
GVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE
QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA
VEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL
DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKG
KILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD
ADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKRGKQEQYIKD
DEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMKTLKRLS
RLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYN
ASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLS
SLLGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPD
QLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALS
VSNLDF
>PP1145 hepA, RNA polymerase-associated protein HepA
MAQQYQPGQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNA
PLTRVRFSPGDQITHFEGWKLTVREVEDIDGLMVYHGLDGQNQPRTLPET
QLSNFIQFRLASDRLFAGQIDPLSWFSLRYNTLQHTSKQMQSALWGLGGC
RAQPIAHQLHIAREVADRSAPRVLLADEVGLGKTIEAGLVIHRQLLSGRA
SRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDASNPFEDAQLA
LVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQL
AQVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPV
AEAVQELLDEGRLSPKAHATILGFLGAEGEALLAAVSDGDTQASARLIRE
LLDRHGTGRVLFRNTRAAIQGFPERQLHPYPLPTPEQYRDLPAGEHAELY
PEVAFQAQGEVADDERWWRFDPRVDWLIDTLKMLKRTKVLVICAHAETAM
DLEDALRVRSGIPASVFHEGMSILERDRAAAYFADEEFGAQVLICSEIGS
EGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIQLHIPYLQDSP
QERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENKAWDTLVA
DARSERERLEAELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIY
METLFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRGQA
LSREDMQFLTWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLEL
LFVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLASRVAFETLNDQLESV
PRASANKFVQAQRDVLAKRISGGEEKILPAHNERVAEAQRRLAAEADEEL
ARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIRVLVAG
>PP4796 holA, DNA polymerase III, delta subunit
MKLAPAQLNKHLQGALAPVYVVSGDDPLLCQEAADAIRNAARQQGFDERQ
VFSADANFDWGTLLQAGASLSLFAQRRLLELRLPSGKPGDKGAAALMEYC
ANPAEDTLLLISLPKLDSSAQKTKWGKALIEGAHCQFIQIWPVDVHQLPQ
WINQRLQQAGLSAQRDAVDLIAARVEGNLLAAAQEIEKLKLLAEGSQITV
ETVQAAVADSARFDVFGLVDAILNGEAAHALRMLEGLRGEGVEPPVILWA
LARELRQLAGLAQQFSQGVPLDKAFSQARPPIWDKRRPLVSKALQRLSAQ
RWAQLLQDAQRIDAQIKGQAEGSPWIGLARLSLLMAGQRLALPPE
>PP1966 holB, DNA polymerase III, delta prime subunit
MAEAYPWQQALWQQLAGRSRHAHAYLLHGPQGIGKRAMAERLMARLLCQQ
PQGLDACGACKSCLLLKAGSHPDNFVLEPEEADKPIKVDQVRELVAFVVQ
TAQLGGRKVVLIEPVEAMNVNASNALLKSLEEPSGDTVLLLVTHQPSRLL
PTIKSRCQQVACPQPSLAQSQAWLAGALPDCDEVERDELLTLAAGSPLMA
VSLQAQGVREQRALVTDGVKKLLKQQQSPSQLADAWSGVPLLLLFDWFCD
WTHLILRYQLTQDEEGLGLADMRKVVQYLAQKSRQAKVLEVQAWILEQRQ
KVLGKANLNRALLLESLLAHWLQLPGAR
>PP0979 holC, DNA polymerase III, chi subunit
MSKVDFYILPTDSLSARLDFACKLCEKAWRLGHRVYLHCQDAEQRSELDQ
RLWRFKGEAFVPHDLAEVHADADVVLGLADNAGEHHGLLINLGASVPGFV
GQFERVAEIVVEEPAIRQSARERFRFYREQGYALQDHRLQRL
>PP4546 hrpA, ATP-dependent helicase HrpA
MTDHAIDKLLQNLDHAMIADRHCLRRQLHELRKRPDEAKLAQWVEKVQAS
CAQVTARQQSVPTVRYDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKT
TQLPKICLELGRGSHGLIAHTQPRRIAARSVAARVAEELGTPLGALVGYQ
VRFEDQSDSNTLVKLMTDGILLAETQHDRFLERYDTIIVDEAHERSLNID
FLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAPIIEVSGRTFPVD
TWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVV
LATNVAETSLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQ
RKGRCGRVEPGICVRLYSEEDFNSRPAFTDPEILRTNLAAVILQMLHLRL
GAIDAFPFIEPPDGKAISDGFNLLQELSAVNRENQLTPIGRQLARLPIDP
RLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQAADQAHAQWKD
VDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREWRDAHRQ
LALICRDLQLTVNKEPTDYQKLHKAILSGLLSQIGQKTEEGDYQGARQRR
FWVHPSSGLGRKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIK
KNHFEPHWEKKRGQVVAYEQITLYGLILVGRRPVHYGPIDPATSRELFIR
EGLVGGEIQSRAKCLAANKRLLGELDELEAKARRRDILADEETLYAFYEA
RLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREASEVTAAQYPDS
MQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMT
GARVSDEAWDESVNQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAA
SQAALAVPRDAKGEQPVQAKAFSEVKQTAQQKIAGLSMTVYPALVEDNGT
VREGRFSTQAEAEFQHRRALQRLLLQQLAEPAKFLRGKLPGLTELGLLYR
EMGRVEALVEDILLASLDSCILEGEQPLPREGAALAALAERKRGSWAEHA
ERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGVWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARAD
KHAQEGKRDEQLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVE
G
>PP4772 hrpB, ATP-dependent helicase HrpB
MISLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQ
SILMLEPRRLAARAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVV
TEGILTRRLQADPALEGVGLLIFDEFHERSLDADLALALSLNGRELLRDD
PPLKILLMSATLEGERLSRLLDDAPVVSSEGRMHPVDIRWGRPFQPGEFI
EPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEVLGARPEILLCP
LHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQL
AAHGSAEILQADLAGLALQLARWGVTPEQLRWLDQPPAAAYAQAQDLLAR
LSAFRPGSRDTLSEHGQAMAELPAHPRIAHLLLRGQDLGLAQMACDVAAL
LGERDIQRGGGADLHSRLALVSGESKAARGGQGGVQRARQLARQYRGLLR
GKVGAPVADPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLANGRAALFG
EVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLEGVLAEQVERVD
ILDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARTRALLGLVRRKGL
NLLTWTPELRQWQARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQP
YLSKVSRLSHFAALDLPSMLRNLLPWPLPQRLEEQAPAHLAVPSGSNIRL
DYSETPPILAVRLQELFGLADTPRIANGRQQVKLHLLSPARRPVQVTQDL
ASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPRGS
>PP5313 hupA, DNA-binding protein HU-alpha
MRKPELAAVIADKADLTKEKANQVLNAILDSITGALDKDTVTLVGFGTFE
KRHRGARTGKNPQTGEPVKIKASNTVAFKPGKNLRDSVNAPAKPAKKGK
>PP2303 hupB, DNA-binding protein HU-beta
MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTF
SVKERAERTGRNPQTGKAIKIEAAKVPGFKAGKGLKDAVN
>PP0975 hupN, DNA-binding protein HU, form N
MALTKDQLIADIAESIAAPKATAKNALEQLGQIVADQLENGAEITLPGIG
KLKVSERPARTGRNPSTGAAIEIAAKKVVKFVPAKVLTDAINK
>PP2471 ihfA, integration host factor, alpha subunit
MGALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGF
GNFDLRDKRQRPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKP
>PP1773 ihfB, integration host factor, beta subunit
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGS
FSLHYRAPRVGRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEDEHEEAHT
>PP4274 ligA, DNA ligase, NAD-dependent
MTAETRILELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPH
LVTPDSPTQRVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVEG
LDQPGAVDYSCEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRT
VRNIPLKLQGKGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN
AAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGDSHIGILEQLKAWGLP
ISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVT
VSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPQGARPV
EVPSACPVCGSQVERTRLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAI
IHYVSRRAMDIDGLGEKSVEQLVDEGLIGSPADLYKLQFEQVVGLEGFAE
VSTQKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLGSLARVQQ
ALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAADGIDLRQA
LAAKQADAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAG
QTWVLTGTLERMSRDIAKDKLESLGAKVAGSVSGKTHCVVAGPGAGSKLA
KAAELGVKVLDEDAFVTFLAEQGIAV
>PP2148 mfd, transcription-repair coupling factor
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQA
ADRLEQELRFFAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPE
LSHGILVVPITTALHRLAPTRFLLGSSLVLDVGQTIDVEQMRLRLEASGY
RCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFDPETQ
RSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLAS
GIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRE
RFPARALPNLAIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLEL
LERLKLRPHTVEGWDDFITGAERLAITIAPLDDGLLLDDPGLALIAESPL
FGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDHGVGRYLGLAT
LEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSE
AWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHS
GRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAAD
LAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSE
VDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEQNKSTV
KEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRER
ELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATN
DLEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPL
GGGPEINLRLPALIPEDYLPDVHARLILYKRIASAADEEGLKDLQVEMID
RFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLEFEAETPVDPL
TLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQPA
>PP4896 mutL, DNA mismatch repair protein MutL
MSGGSRIQLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDIEV
EQGGVKLLKVRDDGSGISADDLPLALARHATSKIRELEDLEGVLSLGFRG
EALASISSVARLTLTSRTASASEAWQVETEGRDMTPRVQPAAHPVGTSVE
VRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALARFDVGFHLRHNGKSI
LSLHEAHDEIARARRVGAICGPGFMEQALPIDVERNGLRLWGWVGLPTFS
RSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLELEPN
GVDVNVHPTKHEVRFREGRSVHDFLYGTLHRALADVRPEDQLAAPAAVPE
LVRPTGQQAGEFGPQGEMRLASPVLEQPRAPQQSFSNGGSGAGYQYQYTP
RPSQPLPAAEAQAVYREFYKPLETGAAPATALPESQGDIPPLGYALAQLK
GIYILAENAVGLVLVDMHAAHERIMYERLKVAMASEGLSGQPLLVPETLA
LSQREADCAEEHAQWFQRLGFELQRLGPETLAIRQIPALLKQAEANRLVQ
DVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDM
ENTERSGQCNHGRPTWTQMGLDDLDKLFLRGR
>PP5125 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRI
VSVERRAKYLLINAEVGTLISHLGMSGNLRLVELGLPAAKHEHVDIELES
GLMLRYTDPRRFGAMLWSLDPLNHELLLRLGPEPLTDLFDGERLFQLSRG
RSMAVKPFIMDNAVVVGVGNIYATEALFAAGIDPRREAGGISRARYLKLA
IEIKRVLAAAIEQGGTTLRDFIGGDGQPGYFQQELFVYGRGGQPCKVCGT
ELREVKLGQRASVYCPRCQR
>PP1626 mutS, DNA mismatch repair protein MutS
MSDLSAHTPMMQQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDI
TLTARGQSAGQSIPMCGIPFHSLEGYLAKLVKLGESVVICEQIGDPATSK
GPVERQVVRIITPGTVSDEALLDERRDNLIAALLGDERLFGLAVLDITSG
NFSVQEIKGWENLLAELERLNPVELLIPDDWPRDLPAEKRPGARRRAPWD
FDRDSARKALCQQFATKDLKGFGCDKLTLAIGAAGCLLTYAKETQRTALP
HLRSLRHERLDDTVILDGASRRNLELDINLAGGRDNTLQSVIDRCQTAMA
SRLLSRWLNRPLRDLKVLQARQDSIRCLLDSYRFEKLQPQLKEIGDIERI
LARIGLRNARPRDLARLRDALGALPELQNAMTELEAPHLARLAAITGTYP
ELASLLERAIIDNPPAVIRDGGVLKAGYDNELDELLAISENAGQFLIDLE
AREKARTGLANLKVGYNRVHGYFIELPTKQAEQAPGDYIRRQTLKGAERF
ITPELKAFEDKALSAKSRALAREKMLYDALLETLISHLAPLQDSAAALAE
LDVLSNLAERALNLDLNCPRFVDEPCLRIEQGRHPVVEQVLTTPFVANDL
GLDNSTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVD
RIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTST
FDGLSLAWAAAERLAQLRAYTLFATHYFELTVLPESEPLVANVHLNATEH
NERIVFLHHVLPGPASQSYGLAVAQLAGVPTAVIQRAREHLGRLETTSLP
HEQPAAHKAKDAPQVPHQSDLFASLPHPAIEKLGKLQLDDMTPRQAIEML
YQLKNLL
>gid:164969  mutY  A/G specific adenine glycosylase
MSPEQFSSAVLDWYDEHGRHDLPWQQGITPYRVWVSEIMLQQTQVSTVLN
YFDRFMQALPTVQALAEAPEDEVLHLWTGLGYYTRARNLQKAAKVVVEQH
GGEFPRSVEQLTELPGIGRSTAGAIASISMGIRAPILDGNVKRVLARYTA
QAGYPGEPKVANQLWATAERFTPQQRANHYTQAMMDMGATLCTRSKPSCL
ICPLQRGCEAHLHGEETRYPEPKPRKALPQRRTLMPLLANHEGAILLYRR
PSSGLWGGLWSLPELDDIAQLDDLAYQHGLRLAGRHAMDGLTHTFSHFQL
AIEPWLVHVDPVGEHVAEADWLWYNLATPPRLGLAAPVKKLLERAADELI
AGDAR
>PP1092 nth, endonuclease III
MNAAKRLEIFRRLHEDNPDPKTELAYTTPFELLVAVTLSAQSTDVGVNKA
TARLFPVANTPEAIYALGVEGLSEYIKTIGLYNSKAKNVIEACRLLIERH
DSQVPQTREALEALPGVGRKTANVVLNTAFRQPAMAVDTHIFRVSNRTGI
APGKTVLEVEKKLLKFVPKDYLLDAHHWLILHGRYVCQARKPRCGSCRIE
DLCEYKHKTSDD
>gid:164943  nudE  ADP compound hydrolase
MRQKPTVLSREIVASSRLFRVEAVQLRFSNGAERTYERLVGRGNGYGAVM
IVAMLDAEHAVLVEEYCGGTDEYELSLPKGLIEPGEDVLAAADRELKEEA
GFGARQLEHLTELSLSPGYMSQKIQVVLASDLYEERLEGDEPEPMRVDKV
NLRELSALAMHPQFTEGRALAALYLARDLLIQRGLLEL
>PP3017 ogt, methylated-DNA--protein-cysteinemethyltransferase
MSSAFTIMPSPVGMLTLVARGNCLAAVLWEEERENRVRLGALHRDDQCPV
LRETARQLGEYFDGKRQRFELALDFAGTEFQRQVWAALLAIPFGETRSYS
DIARQLGNPRAVRAVGAANGRNPISIVAPCHRVIGASGSLTGFAGGLAAK
QYLLALEGRQSLALDL
>PP4912 parC, DNA topoisomerase IV, A subunit
MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQR
RIVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPF
SYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDW
VPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACV
RLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMRA
VYRVEDGDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHEN
PCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNL
RTLLVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHII
RTEEYPKQALIERFELTEIQADYILETRLRQLARLEEMKIRGEQDELLKE
QAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENE
LMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFA
VLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATFECVLLPDDDAL
YVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDW
LAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVI
PEGATLVLQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQRVDGLQVEV
PT
>PP4915 parE, DNA topoisomerase IV, B subunit
MANPSASAYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDE
ALAGHARSVQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHA
GGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFK
ASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFSISRLKHVLKAKAVLCP
GLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRLPDEPFCGSLAGNK
EAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE
FRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFV
SGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLKASKKVERKRITQGPA
LPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILN
TWEVDGGEVLASQEVHNIAVAIGVDPGATDLAQLRYGKICILADADSDGL
HIATLLCALFVQHFRTLVEAGHVYVAMPPLYRIDLGKEIYYALDEAERDG
ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDV
EATCELMDKLLAKKRAGDRKSWLETKGNLAEVMV
>PP0739 phrB, deoxyribodipyrimidine photolyase
MHLTWLRSDLRIDDNTALSASTERGPTIALWLVSPGQWQAHDDADCKVDF
WLRNLHDLRQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNE
EYGINEQRRDDATRAMLEKSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFS
QFKKTCLEHLHRSLPALARRVKRQAPLNIGSDPIPQHVEGFGKTTPALRD
HWPAGEAEAQSRLSRFLDETIDDYHHLRDLPAKPGTSQLSPYLAAGVISP
RQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRHRA
FRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMV
VAMFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYF
RIFNPVSQSQRFDPQGRFIRHWVPELQELDEKAIHQPIKSTDLFGNTSYL
SPIVDLSSSRQRALEAFKGLPRRQNQGITS
>gid:164803  polA  DNA polymerase I
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQY
PDSLFAVVFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALG
YPLLCVEGVEADDVIGTLARSSAALGRPVIISTGDKDMAQLVDGHITLVN
TMTGSVLDVAGVHEKFGVGPEHIIDFLALMGDKVDNIPGVPGVGEKTAVG
LLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDAAFLSYELATI
KVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAELQRDAAKAGDDV
APAVEPAVKVEAKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQA
QLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAK
VGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQK
YLDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHHALQA
RLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMA
ELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVL
DELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV
AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRI
MAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFG
LIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQG
FVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKV
DNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQAAQLDVP
LLVEAGVGANWDEAH
>PP2393 polB, DNA polymerase II
MELQQGFVLTRHWHDTPEGTCVEFWLATDAGPRLLRLAAQESVAFIPQAQ
AEHARVLLANETGTKLKPLRLKDFEHRPMLGLYTRQHRQLMQLEQRLRTA
GIDVFEADIRPPERYLMERFITAPVQFTGQPDAQGVYRDAQLKPQPGYRP
ALRLVSLDIETSERGELYSIALEGCGQRQVYMLGPANGDASGLDFDLEYC
ADRAALITRLNQWMARHDPDAIIGWNLVQFDLRLLHEHAKSLQVPLALGR
NGAVMTLRSHAGGGHVFADAPGRLLIDGIEALRSATWSFASFSLENVAQT
LLGEGKAIDTPYQRMDEINRRFAEDKPALARYNLKDCELVTRIFAHTRLL
DFLLERASVTGLAVDRSGGSVAAFCHLYIPQMHRLGFVAPSLGSRPDEAS
PGGFVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLRQPDDAH
SVEGFRGGRFSRTQHCLPAIVERVWQGREAAKREGNAPLSQALKIIMNAF
YGVLGSSGCRFFDPRLASSITMRGHQIMRQTRSLIEACGYDVIYGDTDST
FVWLKGAHAEEDAARIGRELVAKVNQWWQAHLHETMNLHSALELQFEVHY
RRFLMPTIRGTDEGSKKRYAGLVQRADGAEEMVYKGLESVRTDWSPLARQ
FQQELYGRVFRSEPYRDYVREYVRRTLAGEQDELLVYRKRLRRPLADYQR
NVPPHVRAARLADDYNKRLQRPLQYQRGGWISYVITTAGPEPLENLQAPI
DYDHYISRQLLPVADAILPFVGDDFARLTDHQLLLF
>PP5088 priA, primosomal protein N`
MSDVILRLALPSPLRRLFDYKAPASMARLTLTPGMRIRVPFGRREMIGVL
IEVCTQSEVPADKLKPASALLDPVSPIPASLFKLCLWTAQYYQHSLGDTL
SWALPTLLRQGEAAEMRQERFWHIAPGARLEDPRIARAPRQRDALKTLAQ
HPHGVAHSLLAKLNLNKDSLDLLLAKDLVQIETRRHLPALRHEHWLAQPE
LPLNEEQREAFDAVCEGFGGFGAFLLAGVTGSGKTEVYLQLIRETLEAGK
QALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDGE
ADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRAH
QENIPILLGSATPSLETLHNALTGRYRLLRMNQRAGGARPPRMLRLDVKS
LPLDSGISGPLQQAIRQTLEAGQQVLVFLNRRGFAPTLLCHDCGWLSECP
RCDARMTVHQRSGVLRCHHCGYDERLPHQCPQCNHVDLRPVGAGTERAEE
RLKVLFPDYPILRVDRDSTARKDAMHNLFSTIQRGQPSILVGTQMLAKGH
HFPRVTLVAILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVII
QTHLADHPLLVQLTEQGYFAFAEQALDERRAAGLPPYSHLALLRAEAHKP
GQAEGFLDEACAAAERLVAEQRLPGIELLGPVPAPMERRAGRFRAQLLIQ
ANTRAPLHRLISAWLLVLEQLPSGRQVRWSLDVDPVDLY
>PP5284 radC, DNA repair protein RadC
MNIREWPAEERPREKLLQRGAGSLTDTELLAVFLGSGVRGCNVVELSRGL
LVKFGSLRRLLEADREAFVGELGLGPVRYSQLQALLEIGRRHLATSIERE
SAMDSPAAVRRYLKAMLRHEASEVFGCLFLDTKHRPLAFEILFRGTIDRA
SVYPREVVRRALVHNAAALILCHNHPSGISEPSQDDVHLTLSLKRGLALI
DVRVLDHIIIGDGEPLSMVEHGWIVV
>PP1629 recA, recA protein
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQGIPAISTGSLGLDIAL
GIGGLPKGRIVEIYGPESSGKTTLTLSVIAEAQKNGATCAFVDAEHALDP
EYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVP
KAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGV
MFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKIVKNKV
SPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQG
KANAAKYLAENPAIGAEIEKQIREKLLKAGAAAEAGKAAAAEADADDMAD
ADAGY
>PP4673 recB, exodeoxyribonuclease V, beta subunit
MTQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFER
ELLPPQILVVTFTDAATKELRERIRARLAEAARFFRGELEGADPLLHQLR
DDYPQENWPRCAGRLEIAVQWMDEAAVSTIHGWCQRMLREHAFDSGSLFT
QTLETDHSELLGQVMRDYWRRFCYGMQGDALAWVRGNWGSPDALLPRIRP
LFGRVRAQQNGPEPAALIQASLQQRGAQLARIKAPWAQWAEELRQICRDA
LAAKQVDGRKMQARYFEPWFDKLCAWASDEQLVELDLGTGFTRLTPAGMA
EAWKGEPPEHPALNAMQHLQQQLQALDSPDAPLLEHAASWVSARFEVEKR
RRAEMGFDDMLVRLQHALASEAGERLASLIREQFPVALIDEFQDTDPVQY
GIFERIYQISENRAETGLFMIGDPKQAIYAFRGADIYTYLAARRATSGRL
HSLDTNYRSSKAMVAAVNQVFLQAEAREAGRGAFLFREADDNPLPFIEVR
AKGRGEQLLIDGEVSAALQCWQLESEEPVSSSVYRQQMAASCASHIVALL
NGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVRSV
YLSDKDSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALD
RLNQDERVWESWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSD
GERVLTNLLHLAELLQQAAGELDGEQALIRHLAEHLASSGQAGEEQILRL
ESDEQLVKVVTIHKSKGLEYPLVYLPFICTSKPVDGSRLPLAWHDSEGNA
HLTLTPDQEQIERADDERLAEDLRLLYVALTRAQHACWLGVADLKRGNLK
SSQLHRSAFGYLLGGGLALAGSAQLTDWLQALAASCPHITCPGLPQADEQ
MYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLGADSSQAQQL
LDDEVPDAQVLREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVS
ANPQLIERTVGQRCNRRDWAGWIPTLSHWMQRLLSEALPLPGSDQSVTLG
QLRHYQIEMEFWFASHRVDAEQLDRLVARHTHPGLARPAAQPTVLNGMFK
GFIDLAFELDGRYYVTDYKSNWLGADIQAYDAMAMEKAILEHRYDLQYVL
YLLALHRQLRARLADYDYDRHVGGALFIFLRGASSSGHGVYHAKPPRELI
ESLDALFRGEHAPVQQDLFAGVAP
>PP4674 recC, exodeoxyribonuclease V, gamma subunit
MLNTAHLHPGFMIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGI
AQWLKLALAEDPLEDDQGGCGIAAAIDVQLPGSFMWQLYRSVLGRSEIPE
VSLLDKAPLTWRLMRLLPALIERPHFEPLRRFLTDDSDLRKRYQLAERLA
DLFDQYQVYRADWLKDWATGEHVINTARGERKVLPPGNRWQAELWRALLE
DVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALE
ALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQL
DDQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSD
GSPTTLLNELQDDILELRPLAESRERWPAVDTTKDRSIRFHIAHSPQREV
EILHDQLLARFSADPTLRPRDVIVMLPDIDTYAPHIRAVFGQLQRNDPRY
IPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPAVRARFG
IRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWRFGLRRMLL
GYAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATV
SQWGERLHALLHVFFLAEDEGDEFLLMQLQDLRDSWLEVCETVGLHDPLP
LTVVREAWLSGLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDG
DYPRAQPPLDFDLMASDYRPGDRSRREDDRYLLLEALLSARDQLYVSWVG
RSIRDNSERPASVLIGQLRDHIAAGWHLADAQQGQPARPGEQLLHALTQE
HPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGETDAQSEPGLPPYQDAEAL
SLHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASE
SLLGAALAEPDNAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDL
LQRHQQLLQRWPQLVEGALPVHFEHGQHRLEGWLGRVFQAEDQSLLSITT
VPNTISAGRNNLKWHRLIAPWVTHLAACAAGYPYNSALVASDLTLLLAPL
PQAQAAQLLGDLLVARQAAMNAPLPVAAKTAFAWLAQDDADKALAAAARA
YEGDERTSFGERSESIALARQFRDFAALTADETFEGWCETLYRPLFTAPW
QTLGNPEKGA
>PP4672 recD, exodeoxyribonuclease V, alpha subunit
MSRSLVDLLPTPLHAEHLLALAPQHNSADLLQLLDRWVERGWLRALDRAF
VSFLEERAPGSDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPP
EGDALIGPLLLPSQLLANLDLNAWLQRISASPLVAAGDTPGQQARPLVRS
GERLYLRRYWSYERRIDQALRQRLSQAEAPPADLPERLAQLFEGGAPAGQ
VDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQAPAVEQGRPLR
IRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTEVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDK
DQLASVEAGAVLGDLCRDAEEGFYSPATAAWLQQVSGESLAGSGLKAGDE
QRHPLAQQVVMLRFSRRFGEGSGIGQLARLVNRQDAHAARNLLAAPPADV
HSLSLKHEQDRAFDRLLLDGLNRGTDGPQGYRSYLRTLGRYRPALDTAFD
DPAWEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAGLIDS
QQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDEHGQPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPEALNPVLTKEL
VYTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGLMLEQV
>gid:164691  recF  DNA replication and repair protein RecF
MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLAR
SFRSTRLNPVIQYEQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIRIDG
QNARSAAQLAELLPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLP
AWQRLQKALRQRNSWLRHGTLDPASQAAWDRELCLASAEIDEYRRNYIKA
LKPVFERTLSELVELDGLTLSYYRGWDKDRELQEVLASSLLRDQQMGHTQ
AGPQRADLRLRLAGNNAADILSRGQQKLVVCALRIAQGHLVSQARRGHCI
YLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVA
LFHVEQGRITQTHDHRE
>PP5310 recG, ATP-dependent DNA helicase RecG
MSELSKVPVTVLKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVP
IGQLRPGQDAVIEGVVSGADVTMGKRRSLVVRLGDGSGVLTLRFYHFSNA
QKEGLKRGTHLRCYGEARPGASGLEIYHPEYRALNGNEPPPPVEQTLTPI
YPSTEGLTQQRLRLLCQQSLALLGPRSLPDWLPDELARDYQLAPLDEAIR
YLHNPPADADLDELAEGQHWAQHRLAFEELLTHQLSQQRLRESLRSLRAP
VLPRATRLQAQYLANLGFQPTGAQQRVANEIAYDLSQHEPMMRLVQGDVG
AGKTVVAALAALQALEAGYQVALMAPTEILAEQHYITFKRWLEPLGIEVA
WLAGKLKGKARAASLEQIANGAPMVVGTHALFQEEVRFKHLALAIIDEQH
RFGVQQRLALRRKGVAGELCPHQLIMTATPIPRTLAMSAYADLDTSVLDE
LPPGRTPVNTVLVADSRRFEVVERVRAACAEGRQAYWVCTLIEESEELTC
QAAESTYEELGSALGELKVGLIHGRMKPAEKAEIMAEFKAGNLQLLVATT
VIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPP
LSQIGRERLGIMRETNDGFIIAEKDLELRGPGEMLGTRQTGLLQFKVADL
MRDADLLPAVRDAAQALVSRWPEHVSPLLDRWLRHGQQYGQV
>PP1477 recJ, single-stranded-DNA-specific exonuclease RecJ
MRIEPRPLPPTLPFLGNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQL
KGIEAGVDLLVEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVD
YLVPNRFEYGYGLTPEIVEVALQRQPQLLITVDNGISSVDGVAAAKAAGL
KVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIFYVLMALRA
RLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIR
AGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDAALAQDMAQQLDDLNQDRKSIEQGMQREALAQLKDLPVESMPYGL
CLFDADWHQGVIGILASRLKERYHRPTIAFADAGDGMLKGSARSVPGFHI
RDALDAVAARHPQLISKFGGHAMAAGLSLPEANFSAFAEAFDEEVRRQLR
EEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPLFHGVFQLVE
QRVVGERHLKVVLKSECGSVRLDGIAFGIDREVWPNPTVRWVELAYKLDV
NEFRGNESVQLMIAHMEPR
>PP4729 recN, DNA repair protein RecN
MLVHLSIHNYAIVEHLDLEIARGMSVITGETGAGKSIMLDALGLALGDRA
DSGVVRPGTDKADILATFDLVDIPEAHTWLAERDLDNEGLCILRRVITAE
GRSRGYINGTPCPLGDLKALGELLIDIHSQHEHQSLLKTDTHRRLLDEYA
GAVDLARQVQLAAKRWNQTRLELERLSNSGDEQRARHQLLSYQLEELDNL
GLGEHELEQLEQEHKNLTSAEALFGICRQVIDQCSESDSGNVLSALTSSL
NRLGAATNSPKALSEAANLIASAQIQVEEAVGELNRFLDNFDADPIRLQA
LEERLDTIYTLARKHRVHPTELPHLQQQLMEELEGLNASDESIERLGEEL
AAYAQHYKEKARELSGLRQQAAQQLAGAVEQEIQRLGMPGGRFCIELTAN
EGTELSPHGLEQIELLVSANPGQPLKALAKVASGGELSRISLAIQVITAQ
TSRIPTLVFDEVDVGIGGPTAEIVGQLLRRLGERGQVLTVTHLPQVAAQG
HHHLFVHKVRNSDTTHTAVASLGKRERVEEVARMLGGIDLTKESLAHARK
MVVSGKA
>PP1435 recO, DNA repair protein RecO
MEQPVGQPAYVLHSRAYKETSALVDFFTPQGRMRAVLRRARSKGGSLVRP
FVSLEVELRGRGELKNVSRMDSTGIAAWLHGDALFSGLYLNELLMRLLPA
EAPFPTIFEHYTLTLQALAEGRPLEPLLRSFEWRLLDELGYAFSLNQDVN
DQPIAADGLYRLRVDAGLERVELLQPGLFRGIELLALAEADWDAPGALLA
AKRLMRQALAVHLGAKPLVSRELFRKR
>PP4516 recQ, ATP-dependent DNA helicase RecQ
MLEQAQRVLKDIFGYDSFRGRQAAIIECVANGGDALVLMPTGGGKSLCFQ
VPGLLRPGLTVVVSPLIALMDDQVATLDELGVSAAALNSTLTAEQQRELA
GRLRRGEVKMLYLAPERLVQPRMLDFLRDLDISLFAIDEAHCVSQWGHDF
RPEYLQLGQLAELFPHVPRIALTATADMRTREEIVQRLHLQGAERFLSSF
DRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKKVDETAAFLCS
QGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGD
ERHKRIEQHKLDAMLALCEETRCRRQSLLAYFDEILEQPCGHCDNCVDNI
QTWDATEPARQALSAVFRTGQRYGVGHLVDVLLGKDTEKVRNFGHEKLSV
FGVGKGLAEVEWRSLFRQLVARGLVDIDLEGYGGLRLSDSCRPLLRGEVT
LQLRRDLKPQTTAKTSSSSGGSPASQLVRAEERDLWEALRTLRRKLAEEH
SVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEVLN
NSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEA
LGRQELSLDQAIDLPEDLMMEVQDAFLDGEGELPPVSAIAPQFGARVPEG
VLYCVRAALAAEFEL
>PP4267 recR, recombination protein RecR
MSFSPLIRQLIDGLRILPGVGQKTAQRMALQLLERDRSGGLRLAQALTQA
MEGVGHCRQCRTLTEQELCPQCADPRRDDTQLCVVEGPTDVYAVEQTGYR
GRYFVLKGHLSPLDGLGPEAIGIPQLMARIEEQGTFTEVILATNPTVEGE
ATAHYIAQLLSEKGLVASRIAHGVPLGGELEMVDGGTLAHAFAGRRPISL
>PP5264 rep, ATP-dependent DNA helicase Rep
MSRLNPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQY
IVAMTFTNKAAREMKERVATLLRPGEGRGLTVCTFHNLGLNIIRKEHERL
GYKPGFSIFDESDIKALLSDIMQKEYSGDDGIDEIKNMIGAWKNDLVLPP
EALEKARNPREQTAAIVYTHYQRTLKAFNAVDFDDLILQPVKLFQEHPEV
LERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMRNQFTVVGDDDQSIYAW
RGARPENLMLLKEDYPSLKIVMLEQNYRSTSRILRCANVLIANNPHAFEK
QLWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHLRTNRPYSDFAILYR
GNYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDN
AYLRVINVPRREIGSTTLEKLGNYATERGISMYAASEELGLGEHLDARYT
ERLQRFKHWLDGVRHKVALEDPIAALHEMIRDIDYENWIRQQTASDKAAE
FRISNVWFLVEALKNTLEKDEEGDMTIEDAIGKLVLRDMLERQQEEEENA
EGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTIEEERRLAYVG
ITRARQTLAFTFAAKRKQYGEIIDCTPSRFLDELPPDDLAWEGLDDAPVE
VKAARGNNALADIRAMLKR
>PP1295 rhlB, ATP-dependent RNA helicase RhlB
MVEPQEGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAI
GRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQI
AKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFN
QRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA
TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN
LVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTL
ESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGR
AGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH
>PP4142 rnhA, ribonuclease HI
MSDSVEMFTDGACKGNPGPGGWGVLMIYKGVEKELWGGERETTNNRMELM
AAIQGLMSLKRECEVVLTTDSQYVMKGINEWMVNWKKRGWKTAAKEPVKN
ADLWQQLDEQVNRHKVTWKWVRGHIGHPGNERADQLANRGVDEVRAQR
>PP1605 rnhB, ribonuclease HII
MQIGLDFNLVEDLVAGVDEVGRGPLCGAVVTAAVILDPARPILGLNDSKK
LTEARREALFDEICEKALSFCIARAEVEEIDSLNILQATMLAMQRAVEGL
HITPKLALIDGNRCPKLAVPAAPVVKGDSQVPAIAAASILAKVTRDREMS
AFELIYPGYGIGGHKGYPTPVHLEALARLGPTPIHRRSFAPVRAAWEARE
GVTDSLI
>PP1085 rnt, ribonuclease T
MAERFRGYLPVVVDVETGGFNSATDALLEIAAVTIGMDEKGFLFPEHTYF
HRVEPFEGANIEPAALEFTGIKLDHPLRMAVSEESAMTDIFRGVRKALKA
NGCKRAILVGHNSSFDLGFLNAAVARNDLKRNPFHPFSSFDTATLAGLAY
GQTVLARACQSADIDFDGREAHSARYDTEKTAELFCGIVNRWKEMGGWRD
FND
>PP1216 ruvA, Holliday junction DNA helicase RuvA
MIGRLRGTLAEKQPPHLIIDVNGVGYELEVPMTTLYRLPKVGETVTVHTH
LVVREDAHLLYGFAEKRERELFRELIRLNGVGPKLALALMSGLEVDELVR
CVQAQDTSALVRVPGVGKKTAERLLVELKDRFKAWETSPAMFTLVSDGPL
PVASESSAEADAVSALVSLGYKPQEASKAIAAIKDKAGLSSEELIRRSLK
GMISK
>PP1217 ruvB, Holliday junction DNA helicase RuvB
MIEADRLIAASGRDREEVQDRAIRPLSLDEYIGQPVVREQMALFIQAARG
RGESLDHTLIFGPPGLGKTTLANIIAHEMGVSVKSTSGPILERPGDLAAM
LTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQLDIMIGEGPAARSIKL
DLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDLSTIVSRSANIL
GLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMA
LNLLDVDERGFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDV
LEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPGRLGEGGDFSEPGDE
>PP1215 ruvC, crossover junction endodeoxyribonuclease RuvC
MTLILGIDPGSRITGYGVVRQTARGCEYVASGCIRTGSGELHERLQIVFR
GVSEIIAQHGPVTMGIERVFMARNADSALKLGQARGAAIVAAAEAGLEIA
EYSATQVKQAVAGTGGANKEQVMMMVMHLLKLTQKPQIDASDALAIALCH
AHTRSSLVPHGLTTARRRGGRLRL
>PP1365 sbcB, exodeoxyribonuclease I
MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDD
ILPHPAACLVTGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLR
FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDIVRTAYALRPEGIEWPQ
QDGRTSLRLELLSKANGIDHGHAHEALSDVRATIALARLIRQKQPKLYDW
LFQLRSKHKVMEQIRLLQPLVHISGRFSAARNYLGVVLPLAWHPRNRNAL
IVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRCPV
VAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFA
PSEDPEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLF
RYRARNFPETLTGEERQRWYGFCQQRLSEPQWGAPNTLGDFEKARQQAWE
GADEAGRRVLEAWQLHARQLQERYSIG
>PP2024 sbcC, exonuclease SbcC
MKILAIRLKNLASLAGPIDIDFTAEPLASAGLFAITGPTGAGKSTLLDAL
CLALFGTVPRLNAIGREAKVPDADGDIPTSDPRNLLRRGTGSGFAEVDFV
GIDGRRYRARWEANRARDKANGKLQHSRQSFYDLDSEQVLGSGKNEYKQL
VEARLGLNFEQFTRAVMLAQSEFGAFLKADDKDRSELLEKLTNTAIYTRL
GQRAFSKAREAGEAHNALKERASHLLPMAAEARAELDQRLEQAQQQFKAD
QAGERQLEQQRNWLNEQRQLQAQHTEASTTLQAAELDWQQLAEPRLDLAR
LERLAPQRHQFHRRQALSAQLAPVAAKIAEQQQQQAELQVRTRELEQALD
TARQALADRQAEHGENAPRLRQAFAAQDTLARLDQELAAQRSISQQAQQQ
VADGQQQLQQLEDNQQRSVQQLALIDTALADSQHLAGLANAWHAYLPQLK
QVMLIGGRLTKGREELPGLQAQASQANARLQAERDAYDLLFREAKAEPQA
LAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQELRQQLDALRERQQQAM
LQRQQLITEGTAAKAELEAAEQALTLTRQLLERQRLARNTSVEELRNQLR
DGEPCPVCGSAEHPFHQPEALLQSLGRHDQAEEHAAQKQVETLNSKLVEL
RTQLGVVNAQLKDFQQQQQRLGEQLQPLVAQVQAHSLWPALAPQDDKARS
AWLDSQLRRLDEEISQDEKRQSALLALQRDAARLNQQLQAAHDAQQQAQR
HLEQQHQALANDEQLLQQGLNDLAGVLPEEALKALNDDPANAFLALDQQI
AQRLQQLEQRKDELEEQQARQTQLDKLRDQQQARVQGQQQLQQKLAALDE
QRQQALASLAELLGEHASAEAWQQHMDTALEHARTLDADTAQRLQDLRTQ
GVQLASELKANTQQQQALDAECQQLQAQIAQWRSEHPELDDAGLDRLLAM
DDAQVNELRQRLQGAEKAIEQGRVLLQEREQRLQHHAAQMTVDTTVQALE
QALAELRERLANHEQQCAELRAQQADDQRRQQAHQALAAEIEQAHQQWQR
WARLNALIGSASGDVFRKIAQGYNLDLLLHHANAQLRQLARRYRLKRGGS
ALGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASMASSTLRIESL
FIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSDVEVCG
>PP2025 sbcD, exonuclease SbcD
MRLFHTSDWHLGQSLHGQERDFEHACFLDWLLGQLRLRQPDALLIAGDIF
DTVNPPVKAQERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMR
RLRTHALGRVHWLDEGQLDAERLLIPLTNGRGKVAAWCLALPFLRPAEVT
GPQLGDDYLQGITQVHQQLIAAALKKRKKDQALIAISHAHMAGGAVSEDS
ERSLIIGNAEALPAKLFDKAISYVALGHLHKPQKVNREERIRYSGSPIPL
SFAEINYPHQVLEVELDGNGLVSVEPRPVPRAVALQRVGPAPLGELLQQL
ADLPVVDLLEDPNRQPWLEVRVLLDEPQPDLRQQIETALEGKAVRLIRIS
AEYAGRNNAEDDDLAFVELAQMTPQDLFSRAWEQAYGNPADDQALADFAL
LLQDVQQEEEQP
>gid:165171  ssb  single-stranded DNA-binding protein
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVE
RTEWHRVSLFGKVAEIAGEYLRKGSQCYIEGKLQTREWEKDGIKRYTTEI
IVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQ
RPQQAPQRPAPQQPAPQPAADFDSFDDDIPF
>gid:164742  tag  DNA-3-methyladenine glycosidase I
MPRCFWCTDDPLYQAYHDQEWGMPQRDPALLFEMLLLEGFQAGLSWITVL
RKRERYRQVMYGFDPVKLAAMSDERIEELMQDAGIIRNRLKLKAARRNAQ
AWLAVDNPAEWLWSFVGGSPKINHFKQRSDVPAVTDEAKAMSKALQKAGF
TFVGPTICYAFMQATGMVMDHTTDCDRYAALLR
>PP2964 tnpA, Tn4652, transposase
MCSMASVERTAYPILPSQLPAKELHRSYSLSDSEIEWVNNTAKSPALSIG
LAIQLKVFQQLHYFVPFEELPQELISHVRQCLRYGARIAPRYSNPRTLYR
HQAAVRQYLQVTPFYSSDGLAVTEQIARDCAVVLEQRVDLINAMLDELIQ
RGYELPAYSTLNNLAETALASAQEVTFNLVVTRAPIEVIYKLKELLDTDF
GRRQSDFNALKQAPKKPSRKHLEVLIDHLAWLESFGDLEAIFEGIVDAKI
RHFAAQAAAADVSELKDCSLPKRHTLMLALIYRMRVRTRDHLAEMFIRRI
STIHKRAKEELEQIQARQRQKLEQLAATLDGVVQILVQEPDDQEAGSLIR
EYLSPDGNLDRLRETCAEVQATGGNNYLPLIWKHFRSHRSLLFRLSHLLQ
LEPTTQDRSLTQALQLIQDSENLHREWIDEHVDLSFASERWVKVVRRPSS
EGPPTNRRYLEVCVFSYLASELRSGDMCVQGSVSFADYRKQLLPWEECLQ
RLPAYCEKMGLPGTAKEFVASLKTQLEETAQQLDEKFPSCRGDVSINEAG
EPVLRRVAARDIPPSAISLQTALMQRMPARHVLDIMANIEHWIQFTRHFG
PMSGNEPKLKEPAERYLMTIFAMGCNLGPSQAARHLTGNVTPHMLSYTNR
RHLSLEKLDKANRELVELYLQLDLPKLWGDGKAVAADGTQFDFYDDNLLA
GYHFRYRKMGAVAYRHVANNYIAVFQHFIPPGIWEAIYVIEGLLKADLSV
EADTVYSDTQGQSATVFAFTHLLGINLMPRIRNWRDLVMCRPDRGASYKH
INRLFTDTADWNLIETHWQDLMQVALSIQAGKISSPMLLRKLGSYSRRNK
LYHAAQALGSVIRTIFLLNWIGSRELRQEVTANTNKIESYNGFSKWLSFG
GDVIAENDPDEQQKRLRYNDMVASSVILQNTVDMMRILHKLAREGWQFTD
EDVSFLSPYLTSNVKRFGEFNLKLNRPPEPWIKDSVFQQAAGSLRANTAS
KTGA
>PP2139 topA, DNA topoisomerase I
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPA
AKRGKAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIE
ELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITK
KAIQEAFSQPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARGLSAG
RVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGE
AFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFG
KQYLPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELI
WRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKP
GEDDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRP
STYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTA
DMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMTN
IPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADD
EGESESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEG
NYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGE
AAPPKMDKVDMPELKCEKVDDTYVLRDGASGLFLAASQFPKNRETRAPLV
LEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTKEQYVQSEVDGK
PTGWKAFYDGNAWKVEDKR
>PP4019 topB, DNA topoisomerase III
MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPD
SYDERYKRWNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIAT
DADREGEMIARELVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETF
NLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLV
VDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDACDDQGRCLKQS
LAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGA
QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLA
PLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIR
ARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPA
KGREAPPAQVLPALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNV
AKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPA
AFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKLV
ERCSGMRMTISGPAAGAAPPWKKKRRGGGKSKATGSKATPSKPRQARKKR
APL
>PP1413 ung, uracil-DNA glycosylase
MTDDDRIKLEPSWKAALRGEFDQPYMHQLREFLRGEYAAGKEIYPPGPLI
FNALNSTPLDQVKVVILGQDPYHGPGQAHGLCFSVQPGVATPPSLVNIYK
ELQRDLNIPIPSHGYLQSWAEQGVLLLNTTMTVERANAASHAKKGWELFT
DRIIQVVSEQCPNVVFLLWGAHAQSKQKLIDGTKHLVLKSVHPSPLSAYR
GFIGCGHFSRANSFLEQRGLGPIDWALPPL
>gid:165169  uvrA  excinuclease ABC, A subunit
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGT
ITEIYDYLRLLYARVGTPRCPDHDIPLEAQTISQMVDLVLERPEGSKLML
LAPVVRERKGEHLAVFDELRAQGFVRARVNGKLYELDELPKLDKQKKHSI
DVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDEQGEETIFSAR
FACPVCGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLVNTELT
LAEGAIRGWDRRNVYYFQMLGSLAAHYGFSLEEPFGELSAEHQKVILQGS
GKQSVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFL
GTQPCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGEASNYFGQLTLTGR
RGEIAAKILKEICERLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQI
GAGLVGVMYILDEPSIGLHQRDNDRLLATLNHLRDLGNTVIVVEHDEDAI
RLADYVVDIGPGAGVHGGQIVAEGSPQEVMDHPDSLTGKYLSGRKKIVVP
AKRTPRNKKLQLKLKGARGNNLQNVDLEVPIGLLTCVTGVSGSGKSTLIN
NTLYPLAATALNGASSLEAAPHSSMDGLQHLDKVVDIDQSPIGRTPRSNP
ATYTGIFTPIRELFSGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKV
EMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKNIHEVLEMTIEDAREFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGK
TLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIACGTPEELSEMKQSYTGHYLKPLLERDRA
>PP1974 uvrB, excinuclease ABC, B subunit
MSEFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIAN
VIQQVQRPTLVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAY
VPSSDTFIEKDASINDHIEQMRLSATKALLERRDAIIVTTVSCIYGLGSP
ETYLKMVLHVDRGDKLDQRALLRRLADLQYTRNEMDFARATFRVRGDVID
IFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRFTFYPKSHYVT
PRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMY
KGDRSRKETLVEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEA
EHAGRVVEQVVRPTGLVDPQVEVRPALTQVDDLLSEIRKRVAAGERVLAT
TLTKRMAEDLSDYLADHDVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVG
INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAIL
YADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGATV
PGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLE
FEAAAQLRDEIAQLRERLISS
>PP4098 uvrC, excinuclease ABC, C subunit
MSQVFDASAFLATCSGRPGVYRMFDGEARLLYVGKAKNLKKRLASYFRKT
GLAPKTAALVARIAQVETTITANETEALLLEQNLIKEWRPPYNILLRDDK
SYPYVFLSDGEFPRLGIHRGAKKAKGRYFGPYPSAGAIRESLSLLQKAFS
VRQCEDSYYANRTRPCLQYQIKRCKGPCTDLVTAEEYAEDVRHSVMFLEG
RSQQLGNELNAEMEKAAMALDFEKAAELRDQIALLRRVQDQQYIEGGSGD
VDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLS
QYYLGNAERELPGELIVNVVHEDFNAITEALHTLRGRELTISHRVRGTRA
RWQQLAVTNAEQALNARLANRQHMAARFEALAEVLGLDEVPQRLECYDIS
HSSGEATVASCVVFGPEGPIKSDYRRFNIEDVTAGDDYAAMHQALTRRYG
RIKDGEGKLPDVLLVDGGKGQLNMARDVMQELGFTDLTLLGVAKGVTRKA
GFETLYLNDVHHEFTLKGDSSALHLIQQIRDEAHRFAITGHRARRGKARR
VSSLEDVAGVGPKRRRDLLKHFGGLQELNRASIDEIAKAPGISKKLAESI
YASLHSE
>PP5352 uvrD, DNA helicase II
MRTDDLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLI
QVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRL
LRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFIN
GQKDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRAL
DLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLMAVG
DDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALI
ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNAR
NEIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRL
IEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWEAMCQLIAA
KALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYHQEE
KGEKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQA
DEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLS
NSVSRPFGGAKTATNSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEG
SGAQARVQVNFAEGSKWLMLGYAKLEAV
>gid:165028  waaP  lipopolysaccharide core biosynthesis protein WaaP
MKLILAEPFKRLWAGRDAFDAVEALQGEVYRELEGRRTLRTEVAGEGFFV
KIHRGIGWGEIFKNLFTAKLPVLGAGQEWRAIQRLHEVGVPTMTAVAYGE
RGSNPAAQHSFIITEELAPTISLEDFSIDWVKQPPEPRLKRALIAEVAKM
TGGMHRAGVNHRDCYICHFLLHTDRPVTADDFKLSVIDLHRAQTRARISR
RWRDKDLAALYFSALDIGLTQRDKLRFLRGYFQRPLRQVLKDEAALLAWL
ERKAQKLYDRKQRYGDAL
>PP5230 xerC, integrase/recombinase XerC
MKRQLEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQI
QQLRQLIARLHHHGQSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSA
PKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQAILELFYSSGLRLSEL
TNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRGIGNPR
DRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFASHVLES
SQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRSKGTDS
>PP1468 xerD, integrase/recombinase XerD
MPALDHPLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPD
AGRDLILDHLAWRLDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQ
VDMPQLGKPLPKSLSEADVEALLQAPDLGEAIGQRDRAMLEVLYACGLRV
TELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVWLERYQRDGRAE
LLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLRHAF
ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPRG
>PP1027 xseA, exodeoxyribonuclease VII, large subunit
MIKDPFERLGLDREVLTVSQLNGRARVLLEDVFRSVWVEGEISNLARPAS
GHMYFTLKDSGAQVRCALFRQNATRVRQALRDGLAVRVRGKVSLFEGRGD
YQLILDTVEPAGDGALRLAFEALKEKLGAEGLFSAERKKPLPAHPQRIGI
ITSPTGAVIRDIISVFGRRAPQVELNLIPTAVQGREAIAQIVRAIRLADS
LGFDALILARGGGSLEDLWCFNEEAVARAVAACVTPIVSAVGHETDVSIS
DFVADVRAPTPSAAAELLAPDNSGLRQRLDGLQRRLLLRMQNRLTHDRLR
LESLTRRLRHPGERLRQRAQRLDDLDMRLRRAFMLNLNQRRERLARLDAR
LAAQHPGRNLKLLNQRLDSLAERLPRAMREVLKDRRQRFQAQLQTLQVVS
PLATLARGYSILLDEQGQAIRSAEQTRNGQRLTARLNEGELLVRVEDNHL
TPVTLSLLD
>PP0529 xseB, exodeoxyribonuclease VII, small subunit
MARKKASLDFEQSLADLQALVERLENGELSLEESLAAFEQGIALTRDCQG
ALAQAEQKVQILLERDGELAAQPFDAEPEA
>PP2890 xthA, exodeoxyribonuclease III
MKIVCFNINGLRARPHQLAALIEKHQPDVIGLQETKVSDDQFPLADVQAL
GYHVHYHGQKGHYGVALLSRQPPLSLHKGFATDEEDAQRRFIWGTFADAN
GSPITIMNGYFPQGESRDHPTKFPAKQRFYSDLQALLESQFRNDQPVLVM
GDMNISPQDCDIGIGPDNAKRWLKTGKCSFLPEEREWMERLKGWGLVDSF
RHLYPDVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQQLVPRIKAAGVD
YELRGMEKPSDHAPIWLELS