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2024-05-28 20:27:00

Gene list

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COG category: Replication, recombination and repair
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889

Number of genes found: 130

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Thiomicrospira denitrificans ATCC 33889, ATCC 33889
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Tmden_0406 DEAD/DEAH box helicase-likeSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS403259 1815 + 0.360882
NA Tmden_1967 Helicase-likeSubName: Full=Helicase-like protein; chromosome CDS2047708 2799 - 0.384066
NA Tmden_1452 ExonucleaseSubName: Full=Exonuclease; chromosome CDS1523121 618 - 0.276699
NA Tmden_2025 Ribonuclease HSubName: Full=RNase HI; EC=3.1.26.4; chromosome CDS2106542 432 - 0.375
NA Tmden_1648 DNA polymerase III delta prime subunit HolBSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS1733996 630 - 0.328571
NA Tmden_1344 DNA ligase (NAD+)RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1415861 1959 - 0.382338
NA Tmden_0484 putative dUTPaseSubName: Full=Putative dUTPase; chromosome CDS489556 693 + 0.336219
NA Tmden_0681 Exodeoxyribonuclease VIIRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS694105 1251 + 0.357314
NA Tmden_0693 Integrase, catalytic regionSubName: Full=Integrase, catalytic region; chromosome CDS704470 1857 + 0.374798
NA Tmden_0505 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS508751 285 - 0.357895
NA Tmden_0240 conserved hypothetical protein, putative DNA helicaseSubName: Full=Uncharacterized protein; chromosome CDS247907 5265 + 0.392403
NA Tmden_1557 DNA polymerase III, subunits gamma and tauSubName: Full=DNA polymerase III, tau subunit; EC=2.7.7.7; chromosome CDS1630191 1632 + 0.373774
NA Tmden_1284 RecR proteinRecName: Full=Recombination protein RecR; chromosome CDS1356439 570 - 0.326316
NA Tmden_1590 Integrase, catalytic regionSubName: Full=Integrase, catalytic region; chromosome CDS1667067 1857 + 0.374798
NA Tmden_0587 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS594707 735 - 0.292517
NA Tmden_1163 Excinuclease ABC, A subunitSubName: Full=Excinuclease ABC subunit A; chromosome CDS1218234 2829 - 0.366914
NA Tmden_0375 DnaB helicaseSubName: Full=Primary replicative DNA helicase; EC=3.6.1.-; chromosome CDS375468 1452 - 0.368457
NA Tmden_1651 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS1736452 471 - 0.339703
NA Tmden_1607 ExonucleaseSubName: Full=Exonuclease; chromosome CDS1686761 801 + 0.340824
NA Tmden_0640 DNA gyrase, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS650160 2484 - 0.360709
NA Tmden_0938 Phage integraseSubName: Full=Phage integrase; chromosome CDS977850 1182 + 0.330795
NA Tmden_0957 DnaB-like helicase-likeSubName: Full=DnaB-like protein helicase-like protein; chromosome CDS998114 1410 + 0.312057
NA Tmden_0695 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS707268 1137 + 0.328056
NA Tmden_1852 ATPaseSubName: Full=ATPase; chromosome CDS1934031 2238 - 0.372207
NA Tmden_1683 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1764381 228 - 0.350877
NA Tmden_2081 RecJ exonucleaseSubName: Full=Exonuclease RecJ; EC=3.1.-.-; chromosome CDS2171219 1614 + 0.369888
NA Tmden_0963 Uracil-DNA glycosylase superfamilySubName: Full=Uracil-DNA glycosylase superfamily; chromosome CDS1004716 660 - 0.30303
NA Tmden_0959 Phage integraseSubName: Full=Phage integrase; chromosome CDS999955 1179 + 0.319762
NA Tmden_1618 Phage integraseSubName: Full=Phage integrase; chromosome CDS1698097 453 + 0.331126
NA Tmden_1724 Protein of unknown function DUF1568SubName: Full=Uncharacterized protein; chromosome CDS1803691 747 - 0.281125
NA Tmden_1566 Transcription-repair coupling factorSubName: Full=Transcription-repair coupling factor; chromosome CDS1639261 2973 - 0.378406
NA Tmden_0418 Excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS417232 1803 - 0.345535
NA Tmden_1725 Protein of unknown function DUF1568SubName: Full=Uncharacterized protein; chromosome CDS1805475 747 - 0.281125
NA Tmden_1790 ExonucleaseSubName: Full=Exonuclease; chromosome CDS1872591 744 + 0.356183
NA Tmden_0448 Excinuclease ABC, C subunit-likeSubName: Full=Excinuclease ABC, C subunit-like protein; chromosome CDS447986 240 + 0.341667
NA Tmden_0090 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; chromosome CDS95937 2712 + 0.356932
NA Tmden_1931 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; chromosome CDS2014740 1776 + 0.382883
NA Tmden_2104 Crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS2200995 480 - 0.329167
NA Tmden_0610 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS617837 1299 + 0.3495
NA Tmden_1335 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1408618 396 + 0.290404
NA Tmden_0683 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS696021 411 + 0.287105
NA Tmden_0280 Ribonuclease HRecName: Full=Ribonuclease; EC=3.1.26.-; chromosome CDS298260 567 - 0.324515
NA Tmden_1678 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1760949 1014 - 0.386588
NA Tmden_1743 Phage integraseSubName: Full=Phage integrase; chromosome CDS1828245 813 - 0.355474
NA Tmden_0542 DNA polymerase III, deltaSubName: Full=DNA polymerase III, delta; chromosome CDS544990 963 - 0.336449
NA Tmden_0482 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS488647 237 + 0.270042
NA Tmden_0584 ATP dependent DNA ligase, centralSubName: Full=ATP dependent DNA ligase, central; chromosome CDS592181 819 + 0.351648
NA Tmden_1945 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS2028819 1236 - 0.400485
NA Tmden_0779 Integron integraseSubName: Full=Integron integrase; chromosome CDS805318 963 + 0.330218
NA Tmden_1835 Deoxyribonuclease IV (phage T4-induced)RecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS1918311 846 - 0.374704
NA Tmden_1622 ATP-dependent exoDNAse (exonuclease V) alpha subunit-helicase superfamily I member-likeSubName: Full=ATP-dependent exoDNAse (Exonuclease V) alpha subunit-helicase superfamily I member-like protein; chromosome CDS1701208 3339 - 0.36448
NA Tmden_1209 DNA recombination protein, RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1275028 567 - 0.38448
NA Tmden_0129 N-6 DNA methylaseSubName: Full=N-6 DNA methylase; chromosome CDS133609 1602 + 0.262172
NA Tmden_2022 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2103763 972 + 0.349794
NA Tmden_0516 Endonuclease III/NthRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS516514 687 - 0.333333
NA Tmden_0561 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS564886 591 + 0.323181
NA Tmden_1661 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS1744525 519 + 0.385356
NA Tmden_0121 DNA (cytosine-5-)-methyltransferaseRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS126182 1188 + 0.327441
NA Tmden_1722 DNA invertase gene, RlgASubName: Full=DNA invertase gene, RlgA; chromosome CDS1802050 555 - 0.347748
NA Tmden_1592 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1669865 1137 + 0.328056
NA Tmden_0088 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS93356 2346 + 0.329923
NA Tmden_1565 DNA (cytosine-5-)-methyltransferaseRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS1638160 987 - 0.302938
NA Tmden_0755 Smr protein/MutS2-likeRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS782634 2223 - 0.364822
NA Tmden_0696 transposaseSubName: Full=Transposase; chromosome CDS708415 357 - 0.277311
NA Tmden_0740 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; chromosome CDS763443 2079 + 0.37037
NA Tmden_2002 RecA DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2083144 1038 - 0.3921
NA Tmden_2055 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2147410 405 + 0.31358
NA Tmden_0025 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS30766 1197 + 0.365915
NA Tmden_1854 DNA mismatch repair enzyme MutHSubName: Full=DNA mismatch repair enzyme MutH; chromosome CDS1937613 1404 - 0.266382
NA Tmden_0171 DNA topoisomeraseRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS171145 2232 - 0.390681
NA Tmden_1708 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1789870 1386 - 0.34127
NA Tmden_0109 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS115738 1230 - 0.334959
NA Tmden_1633 Phage integraseSubName: Full=Phage integrase; chromosome CDS1714292 1107 - 0.36495
NA Tmden_1253 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1320954 1224 - 0.303922
NA Tmden_0023 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS27963 1653 + 0.377495
NA Tmden_1723 Phage integraseSubName: Full=Phage integrase; chromosome CDS1802601 603 - 0.364842
NA Tmden_1658 SMF proteinSubName: Full=SMF protein; chromosome CDS1741986 777 - 0.359073
NA Tmden_1611 Deoxyribodipyrimidine photolyaseSubName: Full=Deoxyribodipyrimidine photo-lyase type I; EC=4.1.99.3; chromosome CDS1690229 1338 - 0.31988
NA Tmden_0881 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS911153 1179 + 0.302799
NA Tmden_1562 Uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS1635274 672 - 0.385417
NA Tmden_0130 Site-specific DNA-methyltransferase (adenine-specific)SubName: Full=Site-specific DNA-methyltransferase (Adenine-specific); EC=2.1.1.72; chromosome CDS135212 1011 + 0.354105
NA Tmden_0527 Holliday junction resolvase YqgFRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS527185 393 + 0.391858
NA Tmden_0002 DNA-directed DNA polymeraseRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1490 1068 + 0.248127
NA Tmden_0241 Phage integraseSubName: Full=Phage integrase; chromosome CDS253559 1134 - 0.326279
NA Tmden_1593 transposaseSubName: Full=Transposase; chromosome CDS1671012 357 - 0.277311
NA Tmden_0001 chromosomal replication initiator protein, DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS15 1308 + 0.301988
NA Tmden_1128 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1179807 903 - 0.327796
NA Tmden_0910 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS943988 3561 + 0.375737
NA Tmden_1297 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1368185 936 + 0.251068
NA Tmden_0955 transcriptional regulator, XRE familySubName: Full=Transcriptional regulator, XRE family; chromosome CDS996583 699 - 0.27897
NA Tmden_0003 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS2707 2310 + 0.336797
NA Tmden_1855 DNA (cytosine-5-)-methyltransferaseRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS1939017 1308 - 0.350917
NA Tmden_0399 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS397177 987 - 0.325228
NA Tmden_0339 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS338582 252 + 0.321429
NA Tmden_1698 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1778597 228 - 0.302632
NA Tmden_1767 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS1849066 1623 + 0.390635
NA Tmden_0946 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS986764 546 + 0.241758
NA Tmden_0235 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS241091 360 + 0.377778
NA Tmden_1084 ATPaseRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1143886 1542 - 0.335927
NA Tmden_1229 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1297065 534 + 0.316479
NA Tmden_0141 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS145563 1374 + 0.377001
NA Tmden_0684 Methylated-DNA--(protein)-cysteineS-methyltransf eraseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS696436 468 + 0.369658
NA Tmden_1946 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator, AraC family / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada; EC=2.1.1.63; chromosome CDS2030122 849 - 0.359246
NA Tmden_0559 ExonucleaseSubName: Full=Exonuclease; chromosome CDS563747 705 + 0.33617
NA Tmden_0127 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS132163 195 + 0.384615
NA Tmden_0236 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS241524 1158 + 0.291019
NA Tmden_1840 DNA-directed DNA polymeraseSubName: Full=DNA-directed DNA polymerase; EC=2.7.7.7; chromosome CDS1923620 1335 + 0.378277
NA Tmden_1146 Superfamily II DNA and RNA helicases-likeSubName: Full=Superfamily II DNA and RNA helicases-like protein; chromosome CDS1202556 648 + 0.334877
NA Tmden_0211 AAA ATPaseSubName: Full=Recombination protein MgsA; chromosome CDS214898 1182 - 0.386633
NA Tmden_1446 DNA mismatch repair protein MutS-likeSubName: Full=DNA mismatch repair protein MutS; chromosome CDS1513845 3009 - 0.355932
NA Tmden_0596 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS603977 882 + 0.281179
NA Tmden_0800 Phage integraseSubName: Full=Phage integrase; chromosome CDS830503 1110 - 0.290991
NA Tmden_1839 DNA (cytosine-5-)-methyltransferase., Type II site-specific deoxyribonucleaseRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS1921538 1974 - 0.286727
NA Tmden_0437 UvrD/REP helicaseSubName: Full=UvrD/REP helicase; chromosome CDS438775 2049 + 0.348463
NA Tmden_0024 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS29605 1023 - 0.357771
NA Tmden_1244 DNA polymerase ASubName: Full=DNA polymerase A; EC=2.7.7.7; chromosome CDS1311643 2709 - 0.348837
NA Tmden_0763 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS790187 270 - 0.362963
NA Tmden_0340 HhH-GPDRecName: Full=Endonuclease III; EC=4.2.99.18; chromosome CDS338886 675 - 0.339259
NA Tmden_1713 Transposase, IS4SubName: Full=Transposase, IS4 family; chromosome CDS1794231 840 - 0.315476
NA Tmden_1083 TatD-related deoxyribonucleaseSubName: Full=TatD-related deoxyribonuclease; chromosome CDS1143107 777 - 0.343629
NA Tmden_2027 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2107994 468 - 0.320513
NA Tmden_1694 Excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1773781 1983 + 0.379728
NA Tmden_0369 Nucleoside diphosphate pyrophosphataseSubName: Full=Nucleoside diphosphate pyrophosphatase; EC=3.6.1.45; chromosome CDS369361 570 - 0.357895
NA Tmden_1901 Protein of unknown function UPF0102RecName: Full=UPF0102 protein Suden_1901; chromosome CDS1983675 330 - 0.357576
NA Tmden_1355 Site-specific DNA-methyltransferase (adenine-specific)SubName: Full=Site-specific DNA-methyltransferase (Adenine-specific); EC=2.1.1.72; chromosome CDS1426877 1137 - 0.369393
NA Tmden_1779 ATPaseSubName: Full=ATPase; chromosome CDS1861080 1269 - 0.347518
NA Tmden_0368 Primosomal protein nSubName: Full=Primosomal protein n; chromosome CDS367533 1845 + 0.368564
NA Tmden_0058 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS63938 684 - 0.305556
NA Tmden_1891 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1971961 423 + 0.349882
NA Tmden_1247 Phage integraseSubName: Full=Tyrosine recombinase XerD subunit; chromosome CDS1315959 837 - 0.35006