Gene list
Applied filters:
COG category: Replication, recombination and repair
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889
Number of genes found: 130
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Thiomicrospira denitrificans ATCC 33889, ATCC 33889 | ||||||||
---|---|---|---|---|---|---|---|---|
Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | Tmden_1590 | Integrase, catalytic region | chromosome | CDS | 1667067 | 1857 | + | 0.374798 |
NA | Tmden_1722 | DNA invertase gene, RlgA | chromosome | CDS | 1802050 | 555 | - | 0.347748 |
NA | Tmden_1446 | DNA mismatch repair protein MutS-like | chromosome | CDS | 1513845 | 3009 | - | 0.355932 |
NA | Tmden_0129 | N-6 DNA methylase | chromosome | CDS | 133609 | 1602 | + | 0.262172 |
NA | Tmden_0121 | DNA (cytosine-5-)-methyltransferase | chromosome | CDS | 126182 | 1188 | + | 0.327441 |
NA | Tmden_0561 | conserved hypothetical protein | chromosome | CDS | 564886 | 591 | + | 0.323181 |
NA | Tmden_1855 | DNA (cytosine-5-)-methyltransferase | chromosome | CDS | 1939017 | 1308 | - | 0.350917 |
NA | Tmden_0024 | hypothetical protein | chromosome | CDS | 29605 | 1023 | - | 0.357771 |
NA | Tmden_1694 | Excinuclease ABC, B subunit | chromosome | CDS | 1773781 | 1983 | + | 0.379728 |
NA | Tmden_0418 | Excinuclease ABC, C subunit | chromosome | CDS | 417232 | 1803 | - | 0.345535 |
NA | Tmden_0779 | Integron integrase | chromosome | CDS | 805318 | 963 | + | 0.330218 |
NA | Tmden_2022 | hypothetical protein | chromosome | CDS | 2103763 | 972 | + | 0.349794 |
NA | Tmden_1229 | hypothetical protein | chromosome | CDS | 1297065 | 534 | + | 0.316479 |
NA | Tmden_0236 | hypothetical protein | chromosome | CDS | 241524 | 1158 | + | 0.291019 |
NA | Tmden_0406 | DEAD/DEAH box helicase-like | chromosome | CDS | 403259 | 1815 | + | 0.360882 |
NA | Tmden_0090 | UvrD/REP helicase | chromosome | CDS | 95937 | 2712 | + | 0.356932 |
NA | Tmden_0368 | Primosomal protein n | chromosome | CDS | 367533 | 1845 | + | 0.368564 |
NA | Tmden_0959 | Phage integrase | chromosome | CDS | 999955 | 1179 | + | 0.319762 |
NA | Tmden_1611 | Deoxyribodipyrimidine photolyase | chromosome | CDS | 1690229 | 1338 | - | 0.31988 |
NA | Tmden_1335 | conserved hypothetical protein | chromosome | CDS | 1408618 | 396 | + | 0.290404 |
NA | Tmden_1683 | conserved hypothetical protein | chromosome | CDS | 1764381 | 228 | - | 0.350877 |
NA | Tmden_0240 | conserved hypothetical protein, putative DNA helicase | chromosome | CDS | 247907 | 5265 | + | 0.392403 |
NA | Tmden_1557 | DNA polymerase III, subunits gamma and tau | chromosome | CDS | 1630191 | 1632 | + | 0.373774 |
NA | Tmden_1562 | Uracil-DNA glycosylase | chromosome | CDS | 1635274 | 672 | - | 0.385417 |
NA | Tmden_1852 | ATPase | chromosome | CDS | 1934031 | 2238 | - | 0.372207 |
NA | Tmden_0002 | DNA-directed DNA polymerase | chromosome | CDS | 1490 | 1068 | + | 0.248127 |
NA | Tmden_1901 | Protein of unknown function UPF0102 | chromosome | CDS | 1983675 | 330 | - | 0.357576 |
NA | Tmden_1767 | DEAD/DEAH box helicase-like | chromosome | CDS | 1849066 | 1623 | + | 0.390635 |
NA | Tmden_2055 | conserved hypothetical protein | chromosome | CDS | 2147410 | 405 | + | 0.31358 |
NA | Tmden_2002 | RecA DNA recombination protein | chromosome | CDS | 2083144 | 1038 | - | 0.3921 |
NA | Tmden_1355 | Site-specific DNA-methyltransferase (adenine-specific) | chromosome | CDS | 1426877 | 1137 | - | 0.369393 |
NA | Tmden_1083 | TatD-related deoxyribonuclease | chromosome | CDS | 1143107 | 777 | - | 0.343629 |
NA | Tmden_0516 | Endonuclease III/Nth | chromosome | CDS | 516514 | 687 | - | 0.333333 |
NA | Tmden_1622 | ATP-dependent exoDNAse (exonuclease V) alpha subunit-helicase superfamily I member-like | chromosome | CDS | 1701208 | 3339 | - | 0.36448 |
NA | Tmden_0695 | hypothetical protein | chromosome | CDS | 707268 | 1137 | + | 0.328056 |
NA | Tmden_1713 | Transposase, IS4 | chromosome | CDS | 1794231 | 840 | - | 0.315476 |
NA | Tmden_1678 | Holliday junction DNA helicase RuvB | chromosome | CDS | 1760949 | 1014 | - | 0.386588 |
NA | Tmden_1661 | Single-strand binding protein | chromosome | CDS | 1744525 | 519 | + | 0.385356 |
NA | Tmden_0235 | hypothetical protein | chromosome | CDS | 241091 | 360 | + | 0.377778 |
NA | Tmden_1839 | DNA (cytosine-5-)-methyltransferase., Type II site-specific deoxyribonuclease | chromosome | CDS | 1921538 | 1974 | - | 0.286727 |
NA | Tmden_1618 | Phage integrase | chromosome | CDS | 1698097 | 453 | + | 0.331126 |
NA | Tmden_1566 | Transcription-repair coupling factor | chromosome | CDS | 1639261 | 2973 | - | 0.378406 |
NA | Tmden_0058 | hypothetical protein | chromosome | CDS | 63938 | 684 | - | 0.305556 |
NA | Tmden_1284 | RecR protein | chromosome | CDS | 1356439 | 570 | - | 0.326316 |
NA | Tmden_1209 | DNA recombination protein, RuvA | chromosome | CDS | 1275028 | 567 | - | 0.38448 |
NA | Tmden_0881 | hypothetical protein | chromosome | CDS | 911153 | 1179 | + | 0.302799 |
NA | Tmden_0484 | putative dUTPase | chromosome | CDS | 489556 | 693 | + | 0.336219 |
NA | Tmden_0025 | DEAD/DEAH box helicase-like | chromosome | CDS | 30766 | 1197 | + | 0.365915 |
NA | Tmden_1344 | DNA ligase (NAD+) | chromosome | CDS | 1415861 | 1959 | - | 0.382338 |
NA | Tmden_0505 | Histone-like DNA-binding protein | chromosome | CDS | 508751 | 285 | - | 0.357895 |
NA | Tmden_0001 | chromosomal replication initiator protein, DnaA | chromosome | CDS | 15 | 1308 | + | 0.301988 |
NA | Tmden_0640 | DNA gyrase, subunit A | chromosome | CDS | 650160 | 2484 | - | 0.360709 |
NA | Tmden_1297 | hypothetical protein | chromosome | CDS | 1368185 | 936 | + | 0.251068 |
NA | Tmden_0088 | conserved hypothetical protein | chromosome | CDS | 93356 | 2346 | + | 0.329923 |
NA | Tmden_0763 | hypothetical protein | chromosome | CDS | 790187 | 270 | - | 0.362963 |
NA | Tmden_1931 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 2014740 | 1776 | + | 0.382883 |
NA | Tmden_1593 | transposase | chromosome | CDS | 1671012 | 357 | - | 0.277311 |
NA | Tmden_1253 | conserved hypothetical protein | chromosome | CDS | 1320954 | 1224 | - | 0.303922 |
NA | Tmden_0241 | Phage integrase | chromosome | CDS | 253559 | 1134 | - | 0.326279 |
NA | Tmden_1128 | conserved hypothetical protein | chromosome | CDS | 1179807 | 903 | - | 0.327796 |
NA | Tmden_0584 | ATP dependent DNA ligase, central | chromosome | CDS | 592181 | 819 | + | 0.351648 |
NA | Tmden_0437 | UvrD/REP helicase | chromosome | CDS | 438775 | 2049 | + | 0.348463 |
NA | Tmden_1607 | Exonuclease | chromosome | CDS | 1686761 | 801 | + | 0.340824 |
NA | Tmden_1452 | Exonuclease | chromosome | CDS | 1523121 | 618 | - | 0.276699 |
NA | Tmden_1247 | Phage integrase | chromosome | CDS | 1315959 | 837 | - | 0.35006 |
NA | Tmden_0127 | hypothetical protein | chromosome | CDS | 132163 | 195 | + | 0.384615 |
NA | Tmden_0587 | conserved hypothetical protein | chromosome | CDS | 594707 | 735 | - | 0.292517 |
NA | Tmden_0130 | Site-specific DNA-methyltransferase (adenine-specific) | chromosome | CDS | 135212 | 1011 | + | 0.354105 |
NA | Tmden_1698 | hypothetical protein | chromosome | CDS | 1778597 | 228 | - | 0.302632 |
NA | Tmden_1084 | ATPase | chromosome | CDS | 1143886 | 1542 | - | 0.335927 |
NA | Tmden_0955 | transcriptional regulator, XRE family | chromosome | CDS | 996583 | 699 | - | 0.27897 |
NA | Tmden_1743 | Phage integrase | chromosome | CDS | 1828245 | 813 | - | 0.355474 |
NA | Tmden_0171 | DNA topoisomerase | chromosome | CDS | 171145 | 2232 | - | 0.390681 |
NA | Tmden_0946 | hypothetical protein | chromosome | CDS | 986764 | 546 | + | 0.241758 |
NA | Tmden_1724 | Protein of unknown function DUF1568 | chromosome | CDS | 1803691 | 747 | - | 0.281125 |
NA | Tmden_0740 | UvrD/REP helicase | chromosome | CDS | 763443 | 2079 | + | 0.37037 |
NA | Tmden_0684 | Methylated-DNA--(protein)-cysteineS-methyltransf erase | chromosome | CDS | 696436 | 468 | + | 0.369658 |
NA | Tmden_0003 | DNA gyrase, B subunit | chromosome | CDS | 2707 | 2310 | + | 0.336797 |
NA | Tmden_1146 | Superfamily II DNA and RNA helicases-like | chromosome | CDS | 1202556 | 648 | + | 0.334877 |
NA | Tmden_0482 | hypothetical protein | chromosome | CDS | 488647 | 237 | + | 0.270042 |
NA | Tmden_0693 | Integrase, catalytic region | chromosome | CDS | 704470 | 1857 | + | 0.374798 |
NA | Tmden_1840 | DNA-directed DNA polymerase | chromosome | CDS | 1923620 | 1335 | + | 0.378277 |
NA | Tmden_0023 | DNA primase | chromosome | CDS | 27963 | 1653 | + | 0.377495 |
NA | Tmden_0399 | hypothetical protein | chromosome | CDS | 397177 | 987 | - | 0.325228 |
NA | Tmden_0559 | Exonuclease | chromosome | CDS | 563747 | 705 | + | 0.33617 |
NA | Tmden_1633 | Phage integrase | chromosome | CDS | 1714292 | 1107 | - | 0.36495 |
NA | Tmden_0141 | DEAD/DEAH box helicase-like | chromosome | CDS | 145563 | 1374 | + | 0.377001 |
NA | Tmden_1891 | hypothetical protein | chromosome | CDS | 1971961 | 423 | + | 0.349882 |
NA | Tmden_0280 | Ribonuclease H | chromosome | CDS | 298260 | 567 | - | 0.324515 |
NA | Tmden_1854 | DNA mismatch repair enzyme MutH | chromosome | CDS | 1937613 | 1404 | - | 0.266382 |
NA | Tmden_1565 | DNA (cytosine-5-)-methyltransferase | chromosome | CDS | 1638160 | 987 | - | 0.302938 |
NA | Tmden_0596 | conserved hypothetical protein | chromosome | CDS | 603977 | 882 | + | 0.281179 |
NA | Tmden_0957 | DnaB-like helicase-like | chromosome | CDS | 998114 | 1410 | + | 0.312057 |
NA | Tmden_1163 | Excinuclease ABC, A subunit | chromosome | CDS | 1218234 | 2829 | - | 0.366914 |
NA | Tmden_2104 | Crossover junction endodeoxyribonuclease RuvC | chromosome | CDS | 2200995 | 480 | - | 0.329167 |
NA | Tmden_1651 | NUDIX hydrolase | chromosome | CDS | 1736452 | 471 | - | 0.339703 |
NA | Tmden_1708 | conserved hypothetical protein | chromosome | CDS | 1789870 | 1386 | - | 0.34127 |
NA | Tmden_2027 | hypothetical protein | chromosome | CDS | 2107994 | 468 | - | 0.320513 |
NA | Tmden_0963 | Uracil-DNA glycosylase superfamily | chromosome | CDS | 1004716 | 660 | - | 0.30303 |
NA | Tmden_1967 | Helicase-like | chromosome | CDS | 2047708 | 2799 | - | 0.384066 |
NA | Tmden_0109 | hypothetical protein | chromosome | CDS | 115738 | 1230 | - | 0.334959 |
NA | Tmden_1592 | hypothetical protein | chromosome | CDS | 1669865 | 1137 | + | 0.328056 |
NA | Tmden_0448 | Excinuclease ABC, C subunit-like | chromosome | CDS | 447986 | 240 | + | 0.341667 |
NA | Tmden_0800 | Phage integrase | chromosome | CDS | 830503 | 1110 | - | 0.290991 |
NA | Tmden_0527 | Holliday junction resolvase YqgF | chromosome | CDS | 527185 | 393 | + | 0.391858 |
NA | Tmden_0340 | HhH-GPD | chromosome | CDS | 338886 | 675 | - | 0.339259 |
NA | Tmden_1658 | SMF protein | chromosome | CDS | 1741986 | 777 | - | 0.359073 |
NA | Tmden_1648 | DNA polymerase III delta prime subunit HolB | chromosome | CDS | 1733996 | 630 | - | 0.328571 |
NA | Tmden_0339 | conserved hypothetical protein | chromosome | CDS | 338582 | 252 | + | 0.321429 |
NA | Tmden_0938 | Phage integrase | chromosome | CDS | 977850 | 1182 | + | 0.330795 |
NA | Tmden_0681 | Exodeoxyribonuclease VII | chromosome | CDS | 694105 | 1251 | + | 0.357314 |
NA | Tmden_1835 | Deoxyribonuclease IV (phage T4-induced) | chromosome | CDS | 1918311 | 846 | - | 0.374704 |
NA | Tmden_1779 | ATPase | chromosome | CDS | 1861080 | 1269 | - | 0.347518 |
NA | Tmden_0610 | DEAD/DEAH box helicase-like | chromosome | CDS | 617837 | 1299 | + | 0.3495 |
NA | Tmden_1945 | DEAD/DEAH box helicase-like | chromosome | CDS | 2028819 | 1236 | - | 0.400485 |
NA | Tmden_0683 | hypothetical protein | chromosome | CDS | 696021 | 411 | + | 0.287105 |
NA | Tmden_2081 | RecJ exonuclease | chromosome | CDS | 2171219 | 1614 | + | 0.369888 |
NA | Tmden_0375 | DnaB helicase | chromosome | CDS | 375468 | 1452 | - | 0.368457 |
NA | Tmden_1790 | Exonuclease | chromosome | CDS | 1872591 | 744 | + | 0.356183 |
NA | Tmden_0755 | Smr protein/MutS2-like | chromosome | CDS | 782634 | 2223 | - | 0.364822 |
NA | Tmden_2025 | Ribonuclease H | chromosome | CDS | 2106542 | 432 | - | 0.375 |
NA | Tmden_1723 | Phage integrase | chromosome | CDS | 1802601 | 603 | - | 0.364842 |
NA | Tmden_0369 | Nucleoside diphosphate pyrophosphatase | chromosome | CDS | 369361 | 570 | - | 0.357895 |
NA | Tmden_0696 | transposase | chromosome | CDS | 708415 | 357 | - | 0.277311 |
NA | Tmden_0211 | AAA ATPase | chromosome | CDS | 214898 | 1182 | - | 0.386633 |
NA | Tmden_1725 | Protein of unknown function DUF1568 | chromosome | CDS | 1805475 | 747 | - | 0.281125 |
NA | Tmden_1244 | DNA polymerase A | chromosome | CDS | 1311643 | 2709 | - | 0.348837 |
NA | Tmden_0910 | DNA polymerase III, alpha subunit | chromosome | CDS | 943988 | 3561 | + | 0.375737 |
NA | Tmden_0542 | DNA polymerase III, delta | chromosome | CDS | 544990 | 963 | - | 0.336449 |
NA | Tmden_1946 | transcriptional regulator, AraC family | chromosome | CDS | 2030122 | 849 | - | 0.359246 |