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2024-05-19 06:04:51

Gene list

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COG category: Replication, recombination and repair
Organism: Carboxydothermus hydrogenoformans Z-2901, Z-2901

Number of genes found: 135

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Carboxydothermus hydrogenoformans Z-2901, Z-2901
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA CHY_0943 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS833203 900 + 0.427778
NA CHY_1698 prophage LambdaCh01, nuclease domain proteinSubName: Full=Prophage LambdaCh01, nuclease domain protein; chromosome CDS1514279 1119 + 0.364611
NA CHY_0945 Ser/Thr protein phosphatase family proteinSubName: Full=Ser/Thr protein phosphatase family protein; chromosome CDS835975 996 + 0.444779
NA CHY_1702 prophage LambdaCh01, site-specific recombinase, phage integrase familySubName: Full=Prophage LambdaCh01, site-specific recombinase, phage integrase family; chromosome CDS1518067 1116 + 0.37276
NA CHY_1460 putative methyltransferaseSubName: Full=Putative methyltransferase; chromosome CDS1306120 555 - 0.396396
NA CHY_2453 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2198312 678 + 0.435103
NA CHY_0995 flagellar proteinSubName: Full=Flagellar protein; chromosome CDS879583 717 + 0.417015
NA CHY_1343 putative serine/threonine protein kinaseSubName: Full=Putative serine/threonine protein kinase; chromosome CDS1201771 2295 + 0.35512
NA CHY_0203 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS170189 813 - 0.354244
NA CHY_0025 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS19798 882 - 0.424036
NA CHY_1205 ISChy5, transposaseSubName: Full=ISChy5, transposase; chromosome CDS1070623 1341 + 0.409396
NA CHY_0928 ISChy5, transposaseSubName: Full=ISChy5, transposase; chromosome CDS818150 1341 + 0.404922
NA CHY_2212 putative DNA methylaseSubName: Full=Putative DNA methylase; chromosome CDS1993765 990 - 0.306061
NA CHY_1235 DNA replication protein DnaDSubName: Full=DNA replication protein DnaD; chromosome CDS1101597 738 + 0.313008
NA CHY_0026 putative DNA ligase, ATP-dependentSubName: Full=Putative DNA ligase, ATP-dependent; chromosome CDS20666 813 - 0.365314
NA CHY_0829 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS733321 528 + 0.337121
NA CHY_2167 putative transposase, truncationSubName: Full=Putative transposase, truncation; chromosome CDS1942572 873 - 0.328751
NA CHY_0099 putative methylaseSubName: Full=Putative methylase; chromosome CDS85120 1212 + 0.44637
NA CHY_2654 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2357097 3564 - 0.379068
NA CHY_2518 ISChy6, transposaseSubName: Full=ISChy6, transposase; chromosome CDS2250848 1248 + 0.43109
NA CHY_2664 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS2366938 939 - 0.456869
NA CHY_0292 site-specific recombinase, resolvase familySubName: Full=Site-specific recombinase, resolvase family; chromosome CDS258853 339 - 0.424779
NA CHY_1815 helicase, RecD/TraA familySubName: Full=Helicase, RecD/TraA family; chromosome CDS1626329 2238 - 0.415103
NA CHY_1414 conserved hypothetical proteinRecName: Full=UPF0102 protein CHY_1414; chromosome CDS1265980 357 - 0.347339
NA CHY_1672 putative prophage LambdaCh01, scaffold proteinSubName: Full=Putative prophage LambdaCh01, scaffold protein; chromosome CDS1497246 591 - 0.450085
NA CHY_2211 type II restriction endonucleaseSubName: Full=Type II restriction endonuclease; chromosome CDS1992804 948 - 0.271097
NA CHY_2158 CRISPR-associated protein Cas6RecName: Full=CRISPR-associated endoribonuclease; chromosome CDS1938477 747 - 0.390897
NA CHY_2507 ISChy4, transposaseSubName: Full=ISChy4, transposase; chromosome CDS2242358 1206 - 0.478441
NA CHY_2128 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1910329 930 - 0.404301
NA CHY_2165 putative thermonucleaseSubName: Full=Putative thermonuclease; chromosome CDS1941751 558 - 0.333333
NA CHY_1400 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS1254870 225 + 0.351111
NA CHY_0946 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS836960 1440 + 0.416667
NA CHY_1117 ISChy4, transposaseSubName: Full=ISChy4, transposase; chromosome CDS991460 1230 - 0.471545
NA CHY_0036 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS28661 432 + 0.481481
NA CHY_0909 ISChy5, transposaseSubName: Full=ISChy5, transposase; chromosome CDS802541 1341 + 0.407905
NA CHY_0405 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS347230 984 + 0.389228
NA CHY_2201 ATPase, AAA familySubName: Full=ATPase, AAA family; chromosome CDS1981775 1335 - 0.457678
NA CHY_2642 ISChy3, transposaseSubName: Full=ISChy3, transposase; chromosome CDS1113354 1347 + 0.449146
NA CHY_0542 conserved hypothetical protein TIGR00250RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS471262 417 + 0.426859
NA CHY_0179 uracil-DNA glycosylase, family 4SubName: Full=Uracil-DNA glycosylase, family 4; chromosome CDS150424 597 + 0.458961
NA CHY_2646 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2343260 309 - 0.38835
NA CHY_0438 putative DNA repair protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS382062 723 + 0.410788
NA CHY_0811 ISChy8, transposaseSubName: Full=ISChy8, transposase; chromosome CDS718327 1299 + 0.592764
NA CHY_1750 ISChy1, transposaseSubName: Full=ISChy1, transposase; chromosome CDS1567060 1236 - 0.508091
NA CHY_1686 prophage LambdaCh01, DNA replication proteinSubName: Full=Prophage LambdaCh01, DNA replication protein; chromosome CDS1507526 765 - 0.458824
NA CHY_0229 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase, DEAD box family; chromosome CDS196711 1293 + 0.481052
NA CHY_1116 ISChy4, transposition helper proteinSubName: Full=ISChy4, transposition helper protein; chromosome CDS990693 771 - 0.48249
NA CHY_1406 mutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS1259157 525 - 0.348571
NA CHY_1795 putative DNA proccessing protein DprASubName: Full=Putative DNA proccessing protein DprA; chromosome CDS1607323 1077 - 0.451253
NA CHY_0948 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS838656 654 + 0.431193
NA CHY_2675 putative DNA polymerase III, gamma/tau subunitsSubName: Full=Putative DNA polymerase III, gamma/tau subunits; chromosome CDS2373573 1536 - 0.40625
NA CHY_2036 putative DNA polymerase III, epsilon subunitSubName: Full=Putative DNA polymerase III, epsilon subunit; chromosome CDS1822887 669 + 0.382661
NA CHY_1681 prophage LambdaCh01, terminase, small subunitSubName: Full=Prophage LambdaCh01, terminase, small subunit; chromosome CDS1504872 453 - 0.375276
NA CHY_2213 DNA adenine methylaseSubName: Full=DNA adenine methylase; chromosome CDS1994798 930 - 0.287097
NA CHY_0777 ISChy5, transposaseSubName: Full=ISChy5, transposase; chromosome CDS684419 1341 + 0.410142
NA CHY_0051 putative DNA polymerase III, delta prime subunitSubName: Full=Putative DNA polymerase III, delta prime subunit; chromosome CDS41486 804 + 0.414179
NA CHY_1695 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1512883 204 - 0.431373
NA CHY_1109 ISChy1, transposaseSubName: Full=ISChy1, transposase; chromosome CDS984947 1299 - 0.513472
NA CHY_2242 ISChy5, transposaseSubName: Full=ISChy5, transposase; chromosome CDS2028572 1350 - 0.422222
NA CHY_1721 prevent-host-death family proteinSubName: Full=Prevent-host-death family protein; chromosome CDS1535886 228 + 0.368421
NA CHY_1567 DNA-3-methyladenine glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS1408597 576 - 0.383681
NA CHY_1797 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1608476 840 - 0.417857
NA CHY_1251 ISChy3, transposaseSubName: Full=ISChy3, transposase; chromosome CDS2340315 1347 + 0.449146
NA CHY_1236 putative primosomal protein DnaISubName: Full=Putative primosomal protein DnaI; chromosome CDS1102344 714 + 0.351541
NA CHY_2139 CRISPR-associated protein Cas6RecName: Full=CRISPR-associated endoribonuclease; chromosome CDS1917740 747 - 0.390897
NA CHY_0843 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS748874 963 - 0.47352
NA CHY_0774 ISChy1, transposaseSubName: Full=ISChy1, transposase; chromosome CDS681514 1236 - 0.506472
NA CHY_2508 ISChy2, transposaseSubName: Full=ISChy2, transposase; chromosome CDS2243902 1284 - 0.419782
NA CHY_0551 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS479599 207 + 0.454106
NA CHY_1317 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1172649 657 + 0.327245
NA CHY_0598 ISChy9, transposase orfASubName: Full=ISChy9, transposase orfA; chromosome CDS515225 417 + 0.539568
NA CHY_1021 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS900534 1512 + 0.417328
NA CHY_2620 hydrolase, TatD familySubName: Full=Hydrolase, TatD family; chromosome CDS2327874 765 - 0.457516
NA CHY_2640 DNA primase, internal deletionSubName: Full=DNA primase, internal deletion; chromosome CDS2338110 1278 - 0.380282
NA CHY_1291 ISChy1, transposaseSubName: Full=ISChy1, transposase; chromosome CDS1148436 1236 - 0.5089
NA CHY_1344 putative FMN reductaseSubName: Full=Putative FMN reductase; chromosome CDS1204046 822 + 0.400243
cas1 CHY_2152 CRISPR-associated protein Cas1RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS1930728 993 - 0.362538
cas2 CHY_2151 CRISPR-associated protein Cas2RecName: Full=CRISPR-associated endoribonuclease Cas2; EC=3.1.-.-; chromosome CDS1930463 264 - 0.371212
cas4 CHY_2153 CRISPR-associated protein Cas4SubName: Full=CRISPR-associated protein Cas4; chromosome CDS1931731 501 - 0.431138
cas5h CHY_2155 CRISPR-associated protein Cas5, Hmari subtypeSubName: Full=CRISPR-associated protein Cas5, Hmari subtype; chromosome CDS1934760 747 - 0.42838
comEA CHY_0402 competence proteinSubName: Full=Competence protein; chromosome CDS343833 615 + 0.455285
csh2 CHY_2156 CRISPR-associated protein, Csh2 familySubName: Full=CRISPR-associated protein, Csh2 family; chromosome CDS1935523 942 - 0.404459
csm2 CHY_2143 CRISPR-associated protein, Csm2 familySubName: Full=CRISPR-associated protein, Csm2 family; chromosome CDS1921431 432 - 0.402778
csm3 CHY_2142 CRISPR-associated RAMP protein, Csm3 familySubName: Full=CRISPR-associated RAMP protein, Csm3 family; chromosome CDS1920618 801 - 0.418227
csm4 CHY_2141 CRISPR-associated RAMP protein, Csm4 familySubName: Full=CRISPR-associated RAMP protein, Csm4 family; chromosome CDS1919648 957 - 0.422153
csm5 CHY_2140 CRISPR-associated RAMP protein, Csm5 familySubName: Full=CRISPR-associated RAMP protein, Csm5 family; chromosome CDS1918547 1101 - 0.39782
dinB CHY_1651 DNA polymerase IV-AMBIGUITYRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS1483090 1176 - 0.462585
dnaA CHY_2710 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS2399937 1365 - 0.412454
dnaB CHY_0041 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS32795 1332 + 0.463213
dnaE1 CHY_0959 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS844642 2895 + 0.455959
dnaE2 CHY_1137 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1010676 3351 + 0.429424
dnaG CHY_0454 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS397519 1728 + 0.375579
dnaN CHY_2709 DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS2398618 1116 - 0.400538
grdX CHY_2388 grdX proteinSubName: Full=GrdX protein; chromosome CDS2138265 396 + 0.376263
gyrA CHY_2704 DNA gyrase, A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS2392587 2439 - 0.453055
gyrB CHY_2705 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS2395050 1908 - 0.418239
hexA CHY_1397 DNA mismatch repair protein HexARecName: Full=DNA mismatch repair protein MutS; chromosome CDS1250712 2526 - 0.376485
hexB CHY_1396 DNA mismatch repair protein HexBRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1248974 1737 - 0.364997
huP CHY_0205 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS172677 270 + 0.4
ligA CHY_1100 DNA ligase, NAD-dependentRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS974637 1995 + 0.476692
mfd CHY_0200 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS164941 3483 + 0.457939
mutM CHY_1649 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1479593 792 - 0.410354
mutS2 CHY_1564 DNA mismatch repair protein MutSRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS1402759 2334 - 0.379606
mutT CHY_1339 mutator mutT proteinSubName: Full=Mutator mutT protein; EC=3.6.1.-; chromosome CDS1198967 390 + 0.376923
nfo CHY_1757 endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS1572003 852 - 0.455399
nth CHY_1121 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS995456 633 + 0.410742
nucH1 CHY_1644 thermonucleaseSubName: Full=Thermonuclease; EC=3.1.31.1; chromosome CDS1476804 534 - 0.395131
nucH2 CHY_1699 prophage LambdaCh01, thermonucleaseSubName: Full=Prophage LambdaCh01, thermonuclease; EC=3.1.31.1; chromosome CDS1515428 816 + 0.335784
ogt CHY_0809 methylated-DNA-protein-cysteine methyltransferase, selenocysteine-containingSubName: Full=Methylated-DNA-protein-cysteine methyltransferase, selenocysteine-containing; EC=2.1.1.63; chromosome CDS717502 492 + 0.477642
pcrA CHY_1099 ATP-dependent DNA helicase PcrASubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; chromosome CDS972468 2157 + 0.431618
polA CHY_1650 DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS1480397 2496 - 0.417869
polC CHY_1772 DNA polymerase III, alpha subunit, Gram-positive typeRecName: Full=DNA polymerase III polC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS1583643 4224 - 0.431818
priA CHY_1485 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS1325386 2157 - 0.374594
radC CHY_0341 DNA repair protein RadCRecName: Full=UPF0758 protein CHY_0341; chromosome CDS296638 681 + 0.450808
recA CHY_1166 recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1039713 1032 + 0.445736
recF CHY_2707 DNA recombination/replication protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS2397325 1062 - 0.335217
recG CHY_1468 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS1309484 2034 - 0.384464
recJ CHY_2224 single-stranded DNA-specific exonuclease RecJSubName: Full=Single-stranded DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS2008171 2565 - 0.410136
recN CHY_1980 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1769439 1659 - 0.424352
recR CHY_2673 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS2372626 600 - 0.436667
rexA CHY_2186 exonuclease RexARecName: Full=ATP-dependent helicase/nuclease subunit A; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddA; chromosome CDS1962047 3504 - 0.443779
rexB CHY_2187 exonuclease RexBRecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddB; chromosome CDS1965501 3273 - 0.40941
rnhA CHY_0852 ribonuclease HISubName: Full=Ribonuclease HI; EC=3.1.26.4; chromosome CDS756994 447 + 0.420582
rnhB CHY_1426 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1276066 696 - 0.400862
ruvA CHY_1523 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1360720 588 - 0.37415
ruvB CHY_1522 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1359679 1020 - 0.419608
ruvC CHY_1524 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1361304 477 - 0.379455
topA CHY_1794 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1605226 2085 - 0.417266
uvrA CHY_0259 excinuclease ABC, A subunitRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS221829 2823 + 0.482465
uvrB CHY_0258 excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS219819 1989 + 0.479135
uvrC CHY_0267 excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS232950 1824 + 0.413377
xerC CHY_1792 tyrosine recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS1603042 894 - 0.434004
xerD CHY_1964 tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS1755835 864 - 0.41088
xseA CHY_1990 exodeoxyribonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1778158 1419 - 0.403101
xseB CHY_1989 exodeoxyribonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1777935 234 - 0.384615