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2024-05-06 16:23:16

Gene list

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COG category: Replication, recombination and repair
Organism: Carboxydothermus hydrogenoformans Z-2901, Z-2901

Number of genes found: 135

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Carboxydothermus hydrogenoformans Z-2901, Z-2901
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CHY_2646 hypothetical proteinchromosome CDS2343260 309 - 0.38835
NA CHY_1205 ISChy5, transposasechromosome CDS1070623 1341 + 0.409396
NA CHY_1698 prophage LambdaCh01, nuclease domain proteinchromosome CDS1514279 1119 + 0.364611
NA CHY_0025 conserved hypothetical proteinchromosome CDS19798 882 - 0.424036
NA CHY_1672 putative prophage LambdaCh01, scaffold proteinchromosome CDS1497246 591 - 0.450085
NA CHY_1109 ISChy1, transposasechromosome CDS984947 1299 - 0.513472
NA CHY_2167 putative transposase, truncationchromosome CDS1942572 873 - 0.328751
NA CHY_2620 hydrolase, TatD familychromosome CDS2327874 765 - 0.457516
NA CHY_0405 conserved hypothetical proteinchromosome CDS347230 984 + 0.389228
NA CHY_0099 putative methylasechromosome CDS85120 1212 + 0.44637
NA CHY_1344 putative FMN reductasechromosome CDS1204046 822 + 0.400243
NA CHY_0026 putative DNA ligase, ATP-dependentchromosome CDS20666 813 - 0.365314
NA CHY_0946 conserved hypothetical proteinchromosome CDS836960 1440 + 0.416667
NA CHY_0292 site-specific recombinase, resolvase familychromosome CDS258853 339 - 0.424779
NA CHY_2507 ISChy4, transposasechromosome CDS2242358 1206 - 0.478441
NA CHY_0909 ISChy5, transposasechromosome CDS802541 1341 + 0.407905
NA CHY_1681 prophage LambdaCh01, terminase, small subunitchromosome CDS1504872 453 - 0.375276
NA CHY_0829 conserved domain proteinchromosome CDS733321 528 + 0.337121
NA CHY_1400 conserved domain proteinchromosome CDS1254870 225 + 0.351111
NA CHY_1721 prevent-host-death family proteinchromosome CDS1535886 228 + 0.368421
NA CHY_2213 DNA adenine methylasechromosome CDS1994798 930 - 0.287097
NA CHY_0811 ISChy8, transposasechromosome CDS718327 1299 + 0.592764
NA CHY_0843 site-specific recombinase, phage integrase familychromosome CDS748874 963 - 0.47352
NA CHY_0551 conserved hypothetical proteinchromosome CDS479599 207 + 0.454106
NA CHY_1021 conserved hypothetical proteinchromosome CDS900534 1512 + 0.417328
NA CHY_1750 ISChy1, transposasechromosome CDS1567060 1236 - 0.508091
NA CHY_2158 CRISPR-associated protein Cas6chromosome CDS1938477 747 - 0.390897
NA CHY_2242 ISChy5, transposasechromosome CDS2028572 1350 - 0.422222
NA CHY_2664 site-specific recombinase, phage integrase familychromosome CDS2366938 939 - 0.456869
NA CHY_1460 putative methyltransferasechromosome CDS1306120 555 - 0.396396
NA CHY_1797 conserved hypothetical proteinchromosome CDS1608476 840 - 0.417857
NA CHY_1317 hypothetical proteinchromosome CDS1172649 657 + 0.327245
NA CHY_1815 helicase, RecD/TraA familychromosome CDS1626329 2238 - 0.415103
NA CHY_1414 conserved hypothetical proteinchromosome CDS1265980 357 - 0.347339
NA CHY_2518 ISChy6, transposasechromosome CDS2250848 1248 + 0.43109
NA CHY_1291 ISChy1, transposasechromosome CDS1148436 1236 - 0.5089
NA CHY_2128 conserved hypothetical proteinchromosome CDS1910329 930 - 0.404301
NA CHY_2211 type II restriction endonucleasechromosome CDS1992804 948 - 0.271097
NA CHY_2642 ISChy3, transposasechromosome CDS1113354 1347 + 0.449146
NA CHY_0774 ISChy1, transposasechromosome CDS681514 1236 - 0.506472
NA CHY_2640 DNA primase, internal deletionchromosome CDS2338110 1278 - 0.380282
NA CHY_1686 prophage LambdaCh01, DNA replication proteinchromosome CDS1507526 765 - 0.458824
NA CHY_1406 mutT/nudix family proteinchromosome CDS1259157 525 - 0.348571
NA CHY_0051 putative DNA polymerase III, delta prime subunitchromosome CDS41486 804 + 0.414179
NA CHY_1251 ISChy3, transposasechromosome CDS2340315 1347 + 0.449146
NA CHY_2508 ISChy2, transposasechromosome CDS2243902 1284 - 0.419782
NA CHY_2212 putative DNA methylasechromosome CDS1993765 990 - 0.306061
NA CHY_0948 conserved hypothetical proteinchromosome CDS838656 654 + 0.431193
NA CHY_0179 uracil-DNA glycosylase, family 4chromosome CDS150424 597 + 0.458961
NA CHY_2036 putative DNA polymerase III, epsilon subunitchromosome CDS1822887 669 + 0.382661
NA CHY_0928 ISChy5, transposasechromosome CDS818150 1341 + 0.404922
NA CHY_0036 single-strand binding proteinchromosome CDS28661 432 + 0.481481
NA CHY_0542 conserved hypothetical protein TIGR00250chromosome CDS471262 417 + 0.426859
NA CHY_0438 putative DNA repair protein RecOchromosome CDS382062 723 + 0.410788
NA CHY_1795 putative DNA proccessing protein DprAchromosome CDS1607323 1077 - 0.451253
NA CHY_1695 hypothetical proteinchromosome CDS1512883 204 - 0.431373
NA CHY_2165 putative thermonucleasechromosome CDS1941751 558 - 0.333333
NA CHY_0943 conserved hypothetical proteinchromosome CDS833203 900 + 0.427778
NA CHY_2453 hypothetical proteinchromosome CDS2198312 678 + 0.435103
NA CHY_1567 DNA-3-methyladenine glycosylasechromosome CDS1408597 576 - 0.383681
NA CHY_2139 CRISPR-associated protein Cas6chromosome CDS1917740 747 - 0.390897
NA CHY_1116 ISChy4, transposition helper proteinchromosome CDS990693 771 - 0.48249
NA CHY_1117 ISChy4, transposasechromosome CDS991460 1230 - 0.471545
NA CHY_0777 ISChy5, transposasechromosome CDS684419 1341 + 0.410142
NA CHY_1702 prophage LambdaCh01, site-specific recombinase, phage integrase familychromosome CDS1518067 1116 + 0.37276
NA CHY_0203 conserved domain proteinchromosome CDS170189 813 - 0.354244
NA CHY_1236 putative primosomal protein DnaIchromosome CDS1102344 714 + 0.351541
NA CHY_1235 DNA replication protein DnaDchromosome CDS1101597 738 + 0.313008
NA CHY_0598 ISChy9, transposase orfAchromosome CDS515225 417 + 0.539568
NA CHY_0945 Ser/Thr protein phosphatase family proteinchromosome CDS835975 996 + 0.444779
NA CHY_0995 flagellar proteinchromosome CDS879583 717 + 0.417015
NA CHY_2675 putative DNA polymerase III, gamma/tau subunitschromosome CDS2373573 1536 - 0.40625
NA CHY_0229 ATP-dependent RNA helicase, DEAD box familychromosome CDS196711 1293 + 0.481052
NA CHY_1343 putative serine/threonine protein kinasechromosome CDS1201771 2295 + 0.35512
NA CHY_2654 conserved hypothetical proteinchromosome CDS2357097 3564 - 0.379068
NA CHY_2201 ATPase, AAA familychromosome CDS1981775 1335 - 0.457678
cas1 CHY_2152 CRISPR-associated protein Cas1chromosome CDS1930728 993 - 0.362538
cas2 CHY_2151 CRISPR-associated protein Cas2chromosome CDS1930463 264 - 0.371212
cas4 CHY_2153 CRISPR-associated protein Cas4chromosome CDS1931731 501 - 0.431138
cas5h CHY_2155 CRISPR-associated protein Cas5, Hmari subtypechromosome CDS1934760 747 - 0.42838
comEA CHY_0402 competence proteinchromosome CDS343833 615 + 0.455285
csh2 CHY_2156 CRISPR-associated protein, Csh2 familychromosome CDS1935523 942 - 0.404459
csm2 CHY_2143 CRISPR-associated protein, Csm2 familychromosome CDS1921431 432 - 0.402778
csm3 CHY_2142 CRISPR-associated RAMP protein, Csm3 familychromosome CDS1920618 801 - 0.418227
csm4 CHY_2141 CRISPR-associated RAMP protein, Csm4 familychromosome CDS1919648 957 - 0.422153
csm5 CHY_2140 CRISPR-associated RAMP protein, Csm5 familychromosome CDS1918547 1101 - 0.39782
dinB CHY_1651 DNA polymerase IV-AMBIGUITYchromosome CDS1483090 1176 - 0.462585
dnaA CHY_2710 chromosomal replication initiator protein DnaAchromosome CDS2399937 1365 - 0.412454
dnaB CHY_0041 replicative DNA helicasechromosome CDS32795 1332 + 0.463213
dnaE1 CHY_0959 DNA polymerase III, alpha subunitchromosome CDS844642 2895 + 0.455959
dnaE2 CHY_1137 DNA polymerase III, alpha subunitchromosome CDS1010676 3351 + 0.429424
dnaG CHY_0454 DNA primasechromosome CDS397519 1728 + 0.375579
dnaN CHY_2709 DNA polymerase III, beta subunitchromosome CDS2398618 1116 - 0.400538
grdX CHY_2388 grdX proteinchromosome CDS2138265 396 + 0.376263
gyrA CHY_2704 DNA gyrase, A subunitchromosome CDS2392587 2439 - 0.453055
gyrB CHY_2705 DNA gyrase, B subunitchromosome CDS2395050 1908 - 0.418239
hexA CHY_1397 DNA mismatch repair protein HexAchromosome CDS1250712 2526 - 0.376485
hexB CHY_1396 DNA mismatch repair protein HexBchromosome CDS1248974 1737 - 0.364997
huP CHY_0205 DNA-binding protein HUchromosome CDS172677 270 + 0.4
ligA CHY_1100 DNA ligase, NAD-dependentchromosome CDS974637 1995 + 0.476692
mfd CHY_0200 transcription-repair coupling factorchromosome CDS164941 3483 + 0.457939
mutM CHY_1649 formamidopyrimidine-DNA glycosylasechromosome CDS1479593 792 - 0.410354
mutS2 CHY_1564 DNA mismatch repair protein MutSchromosome CDS1402759 2334 - 0.379606
mutT CHY_1339 mutator mutT proteinchromosome CDS1198967 390 + 0.376923
nfo CHY_1757 endonuclease IVchromosome CDS1572003 852 - 0.455399
nth CHY_1121 endonuclease IIIchromosome CDS995456 633 + 0.410742
nucH1 CHY_1644 thermonucleasechromosome CDS1476804 534 - 0.395131
nucH2 CHY_1699 prophage LambdaCh01, thermonucleasechromosome CDS1515428 816 + 0.335784
ogt CHY_0809 methylated-DNA-protein-cysteine methyltransferase, selenocysteine-containingchromosome CDS717502 492 + 0.477642
pcrA CHY_1099 ATP-dependent DNA helicase PcrAchromosome CDS972468 2157 + 0.431618
polA CHY_1650 DNA polymerase Ichromosome CDS1480397 2496 - 0.417869
polC CHY_1772 DNA polymerase III, alpha subunit, Gram-positive typechromosome CDS1583643 4224 - 0.431818
priA CHY_1485 primosomal protein N'chromosome CDS1325386 2157 - 0.374594
radC CHY_0341 DNA repair protein RadCchromosome CDS296638 681 + 0.450808
recA CHY_1166 recA proteinchromosome CDS1039713 1032 + 0.445736
recF CHY_2707 DNA recombination/replication protein RecFchromosome CDS2397325 1062 - 0.335217
recG CHY_1468 ATP-dependent DNA helicase RecGchromosome CDS1309484 2034 - 0.384464
recJ CHY_2224 single-stranded DNA-specific exonuclease RecJchromosome CDS2008171 2565 - 0.410136
recN CHY_1980 DNA repair protein RecNchromosome CDS1769439 1659 - 0.424352
recR CHY_2673 recombination protein RecRchromosome CDS2372626 600 - 0.436667
rexA CHY_2186 exonuclease RexAchromosome CDS1962047 3504 - 0.443779
rexB CHY_2187 exonuclease RexBchromosome CDS1965501 3273 - 0.40941
rnhA CHY_0852 ribonuclease HIchromosome CDS756994 447 + 0.420582
rnhB CHY_1426 ribonuclease HIIchromosome CDS1276066 696 - 0.400862
ruvA CHY_1523 Holliday junction DNA helicase RuvAchromosome CDS1360720 588 - 0.37415
ruvB CHY_1522 Holliday junction DNA helicase RuvBchromosome CDS1359679 1020 - 0.419608
ruvC CHY_1524 crossover junction endodeoxyribonuclease RuvCchromosome CDS1361304 477 - 0.379455
topA CHY_1794 DNA topoisomerase Ichromosome CDS1605226 2085 - 0.417266
uvrA CHY_0259 excinuclease ABC, A subunitchromosome CDS221829 2823 + 0.482465
uvrB CHY_0258 excinuclease ABC, B subunitchromosome CDS219819 1989 + 0.479135
uvrC CHY_0267 excinuclease ABC, C subunitchromosome CDS232950 1824 + 0.413377
xerC CHY_1792 tyrosine recombinase XerCchromosome CDS1603042 894 - 0.434004
xerD CHY_1964 tyrosine recombinase XerDchromosome CDS1755835 864 - 0.41088
xseA CHY_1990 exodeoxyribonuclease VII, large subunitchromosome CDS1778158 1419 - 0.403101
xseB CHY_1989 exodeoxyribonuclease VII, small subunitchromosome CDS1777935 234 - 0.384615