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# Rhizobium etli CFN 42, CFN 42

>RHE_CH01457 putative DNA polymerase III, chi subunit protein
MTDILFYHLTETRLEDALPPLLDKSIERGWRVVVQTSEAARRDALDAHLW
TFREESFLPHGTDTADFAENQPVLLTVTSDNANAATVRFIVDGAEPPPAD
AYERVVFMFDGHDQEQLEAARAQWKKLRGEGHNLTYWQQTPEGRWEKKA
>RHE_CH02156 putative deoxyribonuclease protein, TatD family
MVTISTRVRKLDGLLAITEKYPSVFCSVGTHPNNAGDELDIQTEDLVRLA
NTHEKVVAIGEAGLDYFYDTQKPEDQQTGFRRHIAAARETQLPLVIHSRS
ADEDMASILTEETGKGAFPFILHCFSAGPELARSGVELGGYISFSGILTF
PKSEELREIAKTIPHERLLVETDAPYLAPKRWRGKRNEPSYVVNTAEVLA
ETIGLSYADVARITTENALRLFSKMPRI
>RHE_CH02122 putative hydrolase protein, MutT/nudix family
MKTPRKRSKPRPDKSQPLLRQLAAVPAKLFTGAFRQQYGAICFRYTDDRP
RIEILVITSRESARWVIPKGWPMKGKKPFEAAAIEAWEEAGVRGAVRKKP
VGRYTYLKELDDGDIAPCIVDLFQVEVIEISDDFKEHGQRILEWVSPDEA
ARRVREIELKSLLVEFEVRGRKKRDPR
>RHE_PF00151 putative nucleotidyltransferase protein
MAAADGAAHKRGLRVGMPAAKAQALVQGLTMIDADPMADSATLERLTLWA
LSQYSPVVAMDPPDGIVMDTEGADHLQGGEDLMLSGLVNRFRARGLAARA
AIADTWGAAHALARSKDRETVIIPRGDTAKAVNRLPLSSLRLPAEIVGSL
RTLGFATVGDLAVTPRAPLTLRFGPEVGRHLDQMFGRLAEPIDPIRPADI
VEVQRSFAEPIGAPETIEKYVSRLVRQLCLELEKRGLGVRRADLIVHRVD
NTIQSLRAGTAKPVRDIAWLTKLFRDRIEKIEPGFGIEKLSLAAIIAEPL
VEMQSTSSLIEEQVTDVTPLIDVLGNRGGQRIFRVAPVASDVPERSIQRI
APTADESGATWPLHWQRPSRLLGHPEAIEVIALLPDHPPVSFTWRGKRRR
VKRADGPERIFGEWWQRSSEWIAVRDYFVVEDDAGERFWIFRSGDGVDAD
TGSHKWFLHGVFA
>RHE_CH01539 probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element
MTRPYSNDLRERVIAAVVDGQSCRVVAERFNIAISSVVKWSQRYRATGSV
SPGKMGGHRRRVLEPHRAFIVEQIEQTSHLTLHRLKDELAARGVSVSHNA
IWQFMRREGLSFKKNAVRP
>RHE_CH01164 probable DNA ligase (ATP) protein
MKAFADLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLEVR
NVKPAMLRELVLERMDEVLFHYSYDYVGDLAETISLVWDNERDIDRSALA
QPRLGEVVTRMNGLGRTEVRGYVRDLLDRLDSSGRFAFIKLATGALRIGV
SARLAKQALADLGGKDVAEIETLWHGLQPPYETLFQWLAGGGDKPALASP
AIFHSVMLANAVEEGDLTGLDPADYAAEWKWDGIRVQLSRSGDRRKIYSR
SGDDISGAFPDILEAINFSGVVDGELLVGGTARSNSPTRTFSDLQQRLNR
KTVTAKMLDDYPAFIRAYDMLFDGEEDIRGRNYVDRRERLSDIIDRAPHD
RFDLSPLVPFSSWEELDALRAAPPDPVIEGVMIKRRDSIYQAGRMKGPWF
KWKRNPYNVDAVLMYAQRGHGKRSSYYSDFTFGVWADDEDGEQLVPVGKA
YFGFTDAELELLDKFVRNNTTERFGPVRAVRADRDFGFVVEVAFEGINRS
TRHKSGVAMRFPRIARLRPDKPPYEADRLRTLIAMIDAKPG
>RHE_CH00027 hypothetical conserved protein
MADRHQPRILTIPAGLPFLKTLATTLCDGRLTPLFRHESDDPLSLARVTI
YLPTRRAVRVLRSEFVDLLGGRSAILPVIRPLGETDDDSGYFEEALPATI
DLAQPLSNTARLLELARLILAWRNKLPEIVRHIHSDSPLVAPASPADAIW
LARNLAELIDSIETEDLDWTELSKLDTGDYAAWWQLTAEFLQIASAFWPE
RLSELGKSSPARHRNAILRAEATRISATKPAGPIIIAGSTGSVPATTDLI
AAVANLPEGVIVLPGLDLSMPERHWQMVAPEPLPGQHSNPASRSHPQYGL
SSLLKRLRLTRGDISLLDRPEADLNRRAEILSRALAPAEATSDWGAWKGA
LPEGALDSAFADVSLIEAANEREEATAIAIALRLALERPGRDGESRAALI
TPDRNLARRVMAELSRFGILADDSAGTPLSATPQGTLLQLLLEAALRPGD
PVAIVSLLKHPLARFGLERDALISATEALELLALRGGVAEVDISALELLL
THQLGEQVLDRHAPQWRKALPAEAANAASELARRVTRATQPLASALVRHR
PEERGKTARFTLSEWAERTGRSLEAVAADPHGNLADLWSHEAGDALASLL
GEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIFGTLEARL
QSVDTLILGGLNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDF
EMANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAALRGRGNRY
LQWAGLIDRGEAQAPAQRPSPKPPLALQPKSYSFSEVGRLRRDPYAIYAR
RILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGTPEAAAAMEWI
LTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGG
VELEAINIRLNGVADRIDITGPGAADIIDYKTGYNPSPAQARALLDPQLA
LEAAALSAGAFRDAGSLIPQDLLYVRLRPGRRFQVDTVNNENSARSDKAK
SAMDLAGDSVDQLIKFVSLLQSGEKGFTSRLIPAQQFDFGGDYDHLARVS
EWSTAETEEGGSDE
>RHE_CH01977 probable DNA-methyltransferase protein (hemagglutinin-associated protein)
MTLMQRLQGGSVDFILTDPPYLVRYRDRRGRTVANDNNAVWLKPAFAEMH
RVLKPGRLAVSFYGWNHVDRFMEAWRKAGFRVVGHLVFVKSYASSQRFVR
YHHEQAYVLAKGDAAPPAQPIADVLPWDYTGNRMHPTQKPLRPLEQIIRA
FSKPGELVLDPFCGSGSTLLAAARSGRDYLGMELEHRHQLTASLRVHSGM
A
>RHE_CH00773 probable insertion sequence transposase protein, IS66 family
MNDAAEQLPDDLASALALLAQERARRMKAEAEAASAKALVSHSEALIARL
KLETEKVRRELYGSRSERTARLLEQMELQLEELEADAGEDELAAEIAANA
STVRAFERKRPSRKPFPEHLPRERVVIAAPTNCRCCGSARLSKLGEDITE
TLEVTPRQWKVIQTVREKFSCRECEKISQPPAPFHVTPRGFAGPNLLAMI
LCFASTCGDTISPAMPSSILFAGLTS
>RHE_CH02012 putative insertion sequence transposase protein
MTPPDLQLPDDVETLKAMVLAMAEKAARTDALESEVADLKARNADADERI
ERLTQILKAFDRARFGRQSEKLGSPGIDDEQQAFVFEEIETGISAIRAKV
NKGAADPDAKRAPRPRKGFAPHLERVEVVIEPDELHEHIGKQKVLIGEDV
SERLDVVPAKFRVIVTRRPKYAFKNEDGVIQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGYELDILADYI
LAEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRPFGGSGPPMV
AYRFEDSRAGDRVARHLNGYRGILQVDGHGAYNKLARSDGGNDGVMLAGC
WSHSRRKFYELHASDSSKIASETVELMAKLWEVEAAARGQSPDARVAARQ
ATSAAVVTELFALWQKTLPRISGKSKLAEAIRYATSRRSIFERFLTDGRI
ELDSNIVERAIRPQTITRKNSLFAGSDGGGRTWATIATLLQTAKMNNVDP
QAWLTQTLERIANGWPSSDLDALMPWNYAR
>RHE_CH02440 putative succinoglycan biosynthesis protein
MTRDLRLIRDGVTAFALLVLLALIAVKINDGETIKRAGAFHAADGDSLTL
GGERFRLEGIDAPELNQSCERAGKAWACGRVAREALQEMVLASGTLCQGD
RHDRYDRLLVVCRSGTGGDINAGMVRRGMAVSYGGYGKEEIEARAAKAGL
WAGTFERPRDVRDHARQETVYGDALRFIGRIVGWE
>RHE_CH01405 hypothetical conserved protein
MPQSRMPCAKPSDCTGKTAPKLCSIRCATVCLPANSPPTAPCNNHSESSM
RIGKEKVSRIRLAPVLLAFSLATGNVLLAPSAYALSELHKIPGQASGEAP
PAQGSAEGQNQTQGTTPGVPMAEPLVNSQNSQGVDKTPGAQDASKPVEVI
YDINKAPEPVRKMRQQIVEAAASGDLERLRPLMGTGKDQTQVTVGESTDD
PIGTLKDLSGDPDGDEILAIMLDIVSTGFVHVGQGTADDMYVWPYFAEKD
LKSLTPPERVELLRIVTAGDLSDMQEFGGYNFYRLGITPDGKWKFFTAGD
>RHE_CH02655 putative insertion sequence transposase protein
MPVVSAGVDVSKEWLDVHLHPLGEGRRISNDKAGIGQLKRLLARHRPKSI
VMEASSIDLPIALWLDGFAVAVVDPLRAHVCPRLRAGFLGR
>RHE_CH00287 probable methylated-DNA-[protein]-cysteine S-methyltransferase protein
MAETIHHYLIFETTGGFCGIAWSEAGIARFQLPTKTAEATERLLLRRLPD
AQPGSPMPEVLDTVAAVKRYFQGEETDFSGVQLDLAGQNDFFRDIYAAAR
RVGWGRTTTYGALAKELGVGPEAARDVGQAMAKNPVALIIPCHRVLAAGG
KIGGFSAPGGSSSKARMLELEGVSLAPPPPVQQSLGF
>RHE_CH01096 hypothetical conserved protein
MDMDDFNEAGSGSGDFGASTDKPASIRDSLQAAIDTVEAQGPDDLAVRPR
DGENGRFIAKGQEQAAAAAERQQTPQAESRGQGGEQPAAIGNRVPPGWSA
EAKAQFSSLPGEVQAAIAKREQEVDRGFRVLQDYKGLEEFTPIVRQAGLT
HADVMRRAIEWENALIRDPVNTVLHVAKVAGVNLHALVNGQTGEALQRQH
AGRELQRQTGPINVEATVEHVLRKRDTETQVDAFLSDPANAHAEDVLDDM
VALINAGRASTLQDAYDAACWMRPDIRQQLISQTAPALVREQHAQRAAAA
DQARRASRSISGSSAPGPTRDAARGQPTSIRDSLRDAMRFSRGQV
>RHE_CH00806 probable NTP pyrophosphohydrolase protein, MuT/nudix family
MTLLARLASDVQLMFRRPPRQQYGALCYRVGDGDKLEVLLMTSRDTGRWV
IPKGWPMNGKCAHEVAAQEAMEEAGVKGSVEMETLGAYTYPKVLRDGVRV
SCKVQVYPLEVTGIAKNFKEKGERTIEWVSFDEAAGRVREPELRHLFLAF
KRKLTDRLSVKASKQIPAE
>RHE_CH02722 putative endonuclease/exonuclease/phosphatase family protein
MSLRLATFNVENLLTRFDFTGFRNQLRQDRVIKLFEVNSEGVYQQLEQAR
VIAAADDTRQMTALAIADADADILCLQEIDNMAALQAFEYGYLFRMVGNG
YRQKFLVEGNDSRGIDVAVLMREETRDGQKIEVKDIRSHAMKTYRDFDLF
DEDLALTNRIDDKIFKRDCLELDLLIGGRPLSLYVVHFKSMGNPRDGLDG
RQSTLPLRRAEARAVRRIIEDRFGAGRTAKKSFAICGDMNDYQERVDVVG
RRGAGYRFEHQPEAESALDVFSHDGFAENVVVRRQPLDRWTLYHARGPQE
QHLCQLDYIWLSPALAAHNSGRVPEIIRNGQPYRTVFPPGQEVERYPRTG
WDRPKASDHCPVVMTLDLP
>RHE_CH00779 probable insertion sequence transposase protein
MIPAGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGSLYVFRAKRADR
VKIVWWDGSGVCLYSKRLEKAQFCWPRIGHNRVQLNHAQLMALVDGMDWK
RVRSVAVKPPEIVG
>RHE_CH00775 probable insertion sequence transposase protein
MSAPSSGTRTFHMIEAVADRFEGAPRQLRRRWSDDFKARAVAEALEPGSS
VSAIARRLDIHPSQLFGWRRAALGSHKENIAPIGHKAVTPSADGAIIEVL
IGDVVVRAPADVDEAHLQRVIRAVRSA
>RHE_CH00320 putative endonuclease protein
MSEYVAAAFLMLKGYRILALRHRTRLGEIDIVARKGDLTIFVEVKARHGE
AAAIDAVSVAAQKRIRAASDLWLARQADQARLSQRYDIIAVMPGRLPRHF
PDAF
>RHE_CH03669 probable 6-O-methylguanine-DNA methyltransferase protein
MDMIANPQTDITPDGPDYDIVRRVIELITEDYRDQPSLEAIAARLNQSPT
QLQKTFTRWAGLSPKGFLQAVTLDHAKRLLRKEDMPLLETSIEVGLSGPS
RLHDLFVTHEAMSPGEWKAKGGGLTIRYGFHICPFGVALIMVTDRGLAGL
AFSDSGGERACLEDMTCRWPNAEYIEDMRATMPYASRILEPGKWSSEQPL
RVVLIGTDFQVRVWQSLLKIPFGKAVTYSDIANDIGRPTAQRAVGAAVGA
NPISFVVPCHRALGKNGALTGYHWGLTRKRAMLGWESAHA
>RHE_CH01540 probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element
MAPLRGWGPRGKRLRGFAPHGRWRTLTFLGALRCDKLTAPCVFDGPINGE
CFHAYVRQQLIPTLKPGDIVILDNLGSHKAKAIRDAIRAVGARLWFLPKY
SPDLNPIEQAFAKIKHWMRQAQKRTIEETWRYLGILADTIKPEECANYFS
NAGYASVKT
>RHE_CH00778 probable insertion sequence transposase protein
MTPPDLQLPDDVETLKAMVLAMAEKAARTDALESEVADLKARNADADERI
ERLTQILKAFDRARFGRQSEKLGSPGIDDEQQAFVFEEIETGISAIRAKV
NKGAADPDAKRAPRPRKGFAPHLERVEVVIEPDELHEHIGKQKVLIGEDV
SERLDVVPAKFRVIVTRRPKYAFKNEDGVIQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGYELDILADYI
LAEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRPFGGSGPPMV
AYRFEDSRAGDRVARHLNGYRGILQVDGHGAYNKLARSDGGNDGVMLAGC
WSHSRRKFYELHASDSSKIASETVELMAKLWEVEAAARGQSPDARVAARQ
ATSAAVVTELFALWQKTLPRISGKSKLAEAIRYATSRRSIFERFLTDGRI
ELDSNIVERAIRPQTITRKNSLFAGSDGGGRTWATIATLLQTAKMNNVDP
QAWLTQTLERIANGWPSSDLDALMPWNYAR
>RHE_CH00215 probable insertion sequence transposase protein, ISRm2011-2
MAPLRGWGPRGKRLRGFAPHGRWRTLTFLGALRCDKLTAPCVFDGPINGE
CFHAYVRQQLIPTLKPGDIVILDNLGSHKAKAIRDAIRAVGARLWFLPKY
SPDLNPIEQAFAKIKHWMRQAQKRTIEETWRYLGILADTIKPEECANYFS
NAGYASVKT
>RHE_CH03151 putative DNA alkylation repair protein
MRLATDGLDALELMERSALIRDALFATLPDDFIEAAAILKASLPTLARPG
LSGWMLLPVNQFIAARGPDHFELGLDLLKALTPHFTAEFGIRPFIHRDQQ
RALAVISGWVDDPDQHVRRLASEGTRPRLPWAMRLPQLVKDPAPILPILT
ALMDDPEDYVRRSVANSLNDIAKDHADLVAAFIAGHIQGASAERRRLLKH
ASRTLLKKGHAQALANFGFGAAASLVCELRLISGEVMFGKGLDFEIRVTN
VGKAAQSVMIDYAIHHMKADGSLSPKVFKCKTIMLAPGQSQAIERRHAMR
PITTRRYYPGLHRIAILVNGAESASESFILMMPSRDPS
>RHE_CH02967 putative uracil DNA glycosylase protein
MRRVVLAGRGELGEWRDAARALAAAGILPEEIDWREKSAEADLSFQRDAM
PPAPAASRKPMTVPPAFIELAETVLCHSDTARFSLLYRLLWRLQLDRQLL
EVNSDEDVVRARSMAKNVHRDAHKMTAFVRFKEVGAVSAGRRKFIAWFEP
DHHIVRRTAPFFQRRFNDMDWLIATPKGSAAWDGERLTISDEPCEKPNLS
DATDELWRTYYSSIFNPARLKVKAMQAEMPKKYWKNLPEADLIPGLIASA
ESKVRAMAAREATQSLPFHERLQQAARNLPAEPELPAGTLEALRAEAAVC
MRCPLHANATQTVFGEGPRDAAVMFVGEQPGDQEDIAGRPFVGPAGKLFD
QVIAEAGIDRSMLYVTNAVKHFKYEPRGKRRIHQKPTMGEVKQCRWWLDL
ELALVKPKLIVAMGATALAALTDVTGRLQDVRGKAMAIEGGRTLFVIVHP
SYLLRIPDERLKAEEMLRFRQDMMEIRGLMKATA
>RHE_CH00238 probable insertion sequence transposase protein
MIGPSGNVRVYLACGVTDMRRGIDGLSALVETVVREAPGSGAIFGFRGKR
ADRIKLLWWDGQGFCLFYKILERGYFPWPTAKEGVAHLTQAQLSMLVEGI
DWRRPAWTSAPGRTG
>RHE_CH00916 probable exodeoxyribonuclease VII small subunit protein
MTDSAKPEVSGLSFEKAVAELESIVARLERGDVALDESIEIYERGEALKK
HCETLLSAAENRIEKIRLDRAGKPRGVEPLDGA
>RHE_CH01852 probable holliday junction resolvase protein
MTVLTIEEIAEILPPGQAIAGLDLGTKTIGLSISDLGRRFATPRPVIRRI
KFTIDAQALLDFASAEKVAGFVIGLPMNMDGSAGPRVQATRAFVRNMEQK
TALPFIYWDERLSTVAAERVLIEMDVSRAKRAERIDSAAASFILQGALDR
LSLLARSAGDEFSA
>RHE_PF00086 putative NTP pyrophosphohydrolase protein
MPVRSAGLLIYRLCETGPEVLLVHPGGPFWAKKDEGAWSIPKGLIEAGED
ELSAAIREAQEELGVEIKGSFAPLGEYRQPGGKVVVVWSVEADAALDVET
VRSSEFQIEWPPRSGRIQNFPEVDRAGWFPAAEAEIKILKGQVAMLADLA
TQLGRGR
>RHE_CH04084 putative nucleotidyltransferase protein
MNANFSLSPNQTSFVLQANSQRMLALSFPHLPTDRIARRRWGASWRSKGR
PEAPSIVCSGKLNNAMRLTALDELAERLGLKKEQGVAEARAMYPTLEVVE
EDPAADRRLLEAIADWCDRYTPLVAFDGEDGLFLDITGCTHLFGGEKALL
KDVLSRLFHMGIDARGAISSSPGLSWAVSRFGQSGVIEDEETERVLMSLP
VAALRLQGQTVDALKKLGLKYIGDVISAPRAPLTRRFGPELLLRLDQALG
REEEPVSPRRPVASLSAESRLIEPIGTEEQILAVTRQVAVSLQPSLEARG
AGGRVFELVLFRVDGRVFRISVGASQPLREPKFIAGLFSERLQAVYDDLD
AGYGFEIVRLNVLRHDPFNEAQTDFEGDRQGEISLSAFVDRVSARLGADC
LQSFQLRESHVPERAVIAVPTTDKLSRRGKAEQDGSLPFRQERPLRLFAT
PEPVETVLAEVPDGPPQIFRWRRMQHQVAKSEGPERIAMEWWIDGSDAEA
RDYFRIEDEAGHRFWIYRRGFYGQELSPRWFMHGVFA
>RHE_CH02010 putative insertion sequence transposase protein
MSAPSSGTRTFHMIEAVADRFEGAPRQLRRRWSDDFKARAVAEALEPGSS
VSAIARRLDIHPSQLFGWRRAALGSHKENIAPIGHKAVTPSADGAIIEVL
IGDVVVRAPADVDEAHLQRVIRAVRSA
>RHE_CH01302 probable DNA polymerase bacteriophage-type (uracil-DNA glycosylase) protein
MISVNDLSPAELAALLHFHADAGVEWLQEEEAVDRFAEFEAMKAARRPAA
QAQQERPIAEERPLPGQRQTSPRPSAAARPAPASGPQPAIPDGEAVQQAR
FVAEAARSLSELKTAIEAFNGCNLKHSARSTIFASGDADSGIMMIGSAPS
AEDDREGTPFSGKSGQLFDKMLAAIGLSRSSVLLTQVIPWRPPGNRAASP
AEMDICRPFIERQIALAEPQAILLLGNFAARFFFGENDTIHGLRGRWREI
AVAGRIIPTIASLHPQDLLTAPVNKRLAWNDLLVFQAKLNSLSLLRN
>RHE_CH01580 hypothetical protein
MSARRPLEYDRRHLLLAAVDGAIMPFVILTGASGVGKTTIAEAVERLHGQ
EIDVFYKDRIGVPPVQEMVHQFGSVEGWQRAAIFGWMARLSPLLTKGRSV
LFEGQARFSFLAEAAERAGIGLHSCILIDCDDDTRARRLSIDRGQPELAN
PDMMNWAAFLRHEAAAYECKILDTSNLTLEQGIERVLRELRRQPV
>RHE_CH00026 probable nuclease/helicase protein, ATP dependent
MSDPTALPTDDDPGAWIGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQ
RVIRLLLAGARPSAILCLTYTKAAASEMSNRVFERLADWVVLDDEDLSRR
IMQIEGTAPDALKLAEARRLFAKALETPGGLKIQTIHAFCEALLHQFPLE
ANVAGHFSVLDDRAAAALLSDARRALLTATAPVEGSALAEAFAYVLNLGD
ESGLENLLADIVANRNAIRRFTTAAERRGGVEAVLRDRLGLAAGDTESRI
AAQYWPLPELSGRILELYLSLADQKGGAKAQEVAYGLRLAGRERDDDRRA
EMLEKIFLTAKGEPKSDSQFLVKAMLAEAPQLTSAIAVARAHVAASRDRL
KMMRMFGATQAALVLAGRLNHDYEELKKQRSQLDFEDLITRTADLLTKSG
VGPWIHYKLDRGIDHILVDEAQDTSPIQWSVIQSLAEDFFSGESARPGVR
TLFAVGDEKQSIYSFQGARPERFSEESDRTRRRVSDSGLSFSSVRLPLSF
RSTADVLEAVDEIFRTSDNARGLSAVGEPVVHRSSRIGHPGAVDLWEVVA
PEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVGRETIVDKGKER
LIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLTLTSHIAVQDL
LALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAGLRDDNESVWSHLK
RFAADGTERFRAAVERLELFLRQSRHLSVHDFYARVLGSHGGRRQFLARL
GTEVSDILDEFLTFTLDHESSGLPGLQSFISTLELEAPEVKREQDKGRNE
VRIMTVHASKGLEAPIVFLVDGGSKPFTHTHLPKLRLIETDADEPPLPAW
VPVSDLANSLTQNDAARIQMLAEEEYRRLLYVAMTRAADRLVVCGYRGVR
VNNDTWHMMISTALSEGHPHVEAATFSGPDGEWPGIRWRVPRVERRFERI
DRSEAHDSQEALPEGLSRPLPPQAELPRPLSPSGAGTIVDEDEGSLFVAS
PLFGEKERSDHSLEKGRLIHRMLQALPDIPPVERPDAASRYAERAARLWP
EAERRRLVDSVVKLMDEEGLQPVLGAEARPEVSIMGTLTLEDRRYAVSGR
IDRLAVLADRIVILDYKTNRVPPSTEEAIPFAHKAQLAIYREILAPLYPG
KRIDCMLVYTENASLYTLSEKALGLALAGLKTK
>RHE_CH00214 probable insertion sequence transposase protein, ISRM11/ISRM2011-2
MTRPYSNDLRERVIAAVVDGQSCRVVAERFNIAISSVVKWSQRYRATGSV
SPGKMGGHRRRVLEPHRAFIVEQIEQTSHLTLHRLKDELAARGVSVSHNA
IWQFMRREGLSFKKNAVRP
>RHE_CH00776 probable insertion sequence transposase protein
MIPAGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGSLYVFRAKRADR
VKIVWWDGSGVCLYSKRLEKAQFCWPRIGHNRVQLNHAQLMALVDGMDWK
RVRSVAVKPPEIVG
>RHE_CH02542 putative NTP pyrophosphohydrolase protein, MutT/nudix family
MPEIAIGALIKNGSVLLARRSSERSTHPDQWSLPGGHLEHGEDAETALRR
ELLEEIGVTPQHWLLAGEFVSESPPGAFATFHVYRVDRWQDSPRLIGDEH
TALRWFTAAEIERETELAPPQLAEMLLNLLRPKTNQKA
>RHE_CH01010 putative NTP pyrophosphohydrolase protein, MutT/nudix family
MLHAHDQSNSTIATVRDVQQAGAICYRRNGSGQLRILLVGSRRNGRWGVP
KGNLDPGETTPAAARRESFEEAGVVGDVEATAFGSFSYRKDSSPHHYHVT
VHLLHVVEAQLDFPEKGTRKQKWFPLKVAIRDAAQPGLKALLSRLEGVVL
>RHE_CH02015 putative insertion sequence transposase protein
MRRGIDGLSALVETVVREAPGSGAIFGFRGKRADRIKLLWWDGQGFCLFY
KILERGYFPWPTAKEGVAHLTQAQLSMLVEGIDWRRPAWTSAPGRTG
>RHE_PF00110 probable DNA mismatch endonuclease protein
MSRIRAKNTAPEWIIRRLLHSRGFRYQLHRRDLPGKPDLVFPRFRTAVFV
HGCFWHGHACSLFRMPATRTEFWSAKIGVNRERDAAAMISLQDLGWRSLW
IWECALKGRGRLPESQLAEQVTAFLNSGAIFDEIAENRISPTAEEIL
>RHE_CH03056 probable insertion sequence transposase protein
MTPPDLQLPDDVETLKAMVLAMAEKAARTDALESEVADLKARNADADERI
ERLTQILKAFDRARFGRQSEKLGSPGIDDEQQAFVFEEIETGISAIRAKV
NKGAADPDAKRAPRPRKGFAPHLERVEVVIEPDELHEHIGKQKVLIGEDV
SERLDVVPAKFRVIVTRRPKYAFKNEDGVIQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGYELDILADYI
LAEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRPFGGSGPPMV
AYRFEDSRAGDRVARHLNGYRGILQVDGHGAYNKLARSDGGNDGVMLAGC
WSHSRRKFYELHASDSSKIASETVELMAKLWEVEAAARGQSPDARVAARQ
ATSAAVVTELFALWQKTLPRISGKSKLAEAIRYATSRRSIFERFLTDGRI
ELDSNIVERAIRPQTITRKNSLFAGSDGGGRTWATIATLLQTAKMNNVDP
QAWLTQTLERIANGWPSSDLDALMPWNYAR
>RHE_CH01708 putative ATPase associated with chromosome architecture/replication protein
MSNDLFAPRVPEEVAARRPLADRLRPKTLADVTGQEHLTGEDGVLKRMIE
SGSLGSMIFWGPPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFE
AARMRRMDGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTVILVGATTENPS
FELNAALLSRARVLTFKSHDEESLEELLTRAEAIEQRPLPLTGEARASLI
RMADGDGRAVLTLAEEVWRAAREGESFDTEALTRIVQRRAPVYDKAQDGH
YNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGL
ADPQALVICNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAFKA
ASQAAKQNGSLLPPKHILNAPTKLMKGEGYGEGYRYDHDEPDAFSGQDYF
PEKMGRQTFYDPPERGFERDIRKRLEWWAKLRKERNPR
>RHE_CH02014 putative insertion sequence transposase protein
METAPLDSQDELNTLRALVAEQAAKLESQEAEVIKRDSIIGLLRAQLELL
RHRQHGASSEKIDRKIEQFELMLEEIEASRAEAEQRSGKPPLPELDDASE
KPKRKPLPDDLTTEELVYAAPCNCPTCGGTSFLKAADRVVQVLEHVPASV
KIVRHVEKRMICRECDTTVAGEMPTLPIERGKPGPGLLAHIMIAKFDDHI
PLYRLSEMYDRLGIDISRSVMADWVGRVSALLTPLVLLIRAHIAALDLIH
TDDTPVDVLDPGRGKTKTGRVWVYIFDGSGYQSATPAAIAYYYSPDRRGA
HPADHLASFSGVMHADGYGGYKKLYGNQIIEAACMAHVRRKFHDVIKLKP
SPIAEEALSRIGALYDIENRIRGMSADERRTLRQHHARPVLDELKAWIEA
TLSTLPQKQRLAEAMRYALSRWAALSVYIDDGRVEIDNNIAERAMRPLGI
GRKNWLFAGSDKGGERIANILTIIETVKLQGHNPEVYLTDVLTRIQDHPE
DRIEDLLPWNWTPAKARCEAA
>RHE_CH00948 putative NTP pyrophosphohydrolase protein, MuT/nudix family
MASATNDGRPRRLKPMPKKARSYLGRLAGATDQLFRGEAIEQFAAICYRK
VGDNLVEVLLITSRDSGRWIIPKGWPIAKLAPHQVAEREAWEEAGVKGKA
RKRLFGFYTYIKMLANGERVPSVVQVHLLQAEKIDEKFPEEKQRNSRWLP
PLEAAALVREPGLKSLLGKVEKMVVKLPKA
>RHE_CH02919 probable integrase/recombinase protein
MIKTRLRYCVYDPDPRGNPRYYVRKNGYKKVRIFEKFDDGRGNITEAFMK
AYWAALAAMDGGAAPSKKEVPREDTFDWLVDQYYRSNAFKRLEVTTQSDK
RSVLARFCMTAGPLPYKKFRQQDVANSQLKRKETPGAADKLVKVLRALFN
WAMKQDPPLISANPATGIKKLNAASEGFHTWTPDEIDTYRAYHPIGTTAR
LALEIMINVGARISDAAYIGRQHESGGELRFTARKNRNRKPTVIEVPMMP
DLVDALRHTKTGDFNYLVTEHGRPFTVNGLGNRMREWCDAAGLPQCSAHG
LRKAAAVIFAESGASAPEMCAVFGWSKLETAETYIRNAQKRKMASNAFAR
LADYRNPKSVSFSRAENESETNRGEKHGKSMAKNKNGGPGGTRTPNQAVM
SRRL
>RHE_CH00128 putative NTP pyrophosphohydrolase protein, MutT/nudix family (responsible for removing an oxidativelydamaged form of guanine from DNA and the nucleoti
MNHSLFDSDVPHPEPSNLTAFAANDLNRDSEHRDEHSVERALAKDGTHIF
AFAGDKLVLKHDGQVLDPLFARYELQELQPNWDETVLLGYRKSGEPRLAV
PVGIDVDDLASQYKPADGRTLFREMLIDEVLLGEFAQAASLIRWNGDNRF
CGRCGAAMEIHIGGYKRVCTACEHMIFPRTDPVVIMLTIDEQRGLCLLGR
SPHFAPGMYSCLAGFVEPGETIENAVRRETLEESGIRTGRIRYHASQPWP
MPHSLMIGCYAEAKSTEITRDEAELEDCRWFTREETIEMLERPSAIGKAS
PPKGAIAHRLMRDWAEWKR
>RHE_CH03062 putative hydrolase protein, MutT/nudix family
MLRDIDQLIDKSNTSGAMKSRNGTIVDKEKRPPHIRLALRLLHVYFSFAR
GMTMGVRAACFDKNGRIFLVRHSYVGGWHMPGGGLERNETAEEALVKELR
EEGNLRIIGRPQLVQVYFNTTTTRRDHVVFYRVTVEQTAPRPPDWEISDS
GFFSLDSLPEGTTEATHRRLAELRGEREPDHRW
>RHE_CH00235 probable recombinase, resolvase family
MTIVAYARVSSTGQSLDVQLEKLAALKPTKIFQEKKSGVDRQREELKKAI
DYCREGDVFVVTKIDRLARSTRDLLNIIEELAAKGVEFKVMDQSVDTTSS
TGKLTLQILASVAEFENSIRKERQADGIKKAQADGKQFGRHPKMTQETIA
TIRELKAASMSVKDIMAKTGMSKASVYRALDLSGGTIAE
>RHE_CH00556 probable DNA glycosylase protein
MISFEAIRQRAEERKGGAAALQALLEKHRPDHDRLRAMSDDRILADMTRR
IFYSGFVQKVIDAKWPGFEAAFSGFDPAALNIAPDDYWHELTSDERIIRN
GAKIMSVRANAAFVRELAREHGSAGAFFADWPREDQIGLLDLLSNRGSRL
GGMTGQYFLRGIGRDSFVATLDVLACLRSAGVPLSSSGTTKKDQQLIQQT
FNEWAGETGLSFIHLSRISAYSIDAAH
>RHE_CH00617 putative DNA ligase protein
MALETCQAKRNFKLAPKSKDGKAVAAKRPAAKARSPAPRERDWPKGARKG
AMPDFIEPALAKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKIRMLTRSG
LDWTEKFGREVLEAFAALPVQSAAIDGEIVVERDTGASNFSALQHDLSEG
RNDRFVFYAFDLLHFDGYNLVDVALIDRKQLLESLLPDDNDKLRYSAHFN
ESGGLVLDHACRLSLEGMISKLRDSKYRSGRKGDWIKSKCSHRQEFVIGG
YVPSTSMKNAIGSLAVGYYQGGELKYVGRVGTGYTAATAQMLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLRE
DKPAKDVTREMEKTTAPLLPKSAVTLTHPDRIYWPDEGVTKEGLANYYAQ
VWRFMAPYVVNRPLALLRLPDGINGRQRFFQKHAWKGMNPHIEEITDPKD
KQGEKLLRITDFDGIVALVQSAVLEIHPWGASTDNWEKPDMITMDLDPDD
EVAWADVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTPLTPKAGWAEV
KGFAKWLADSMSADRPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTIEVGPAYFTVDNAPTRLDALPRDPWDGFFAA
AKPLEKKKR
>RHE_CH00395 putative hydrolase protein, MutT/nudix family
MLSALRSRARNWPMNELKPWSVTASRITYEDRWIRVRSDDCVTADGIVIA
PFHVLDYPDWINVIPVMPDGRVLLTREYRHGRGEIVLGLVAGGVEADDGK
TGDGKSGDAALAAAQRELREEAGYEASTFVKLLTSYPNAASHSNTVTSWL
ALGLSRAGEPRFDPGEKVELLFTDLAAILSDLQSGAVIMQSMHVAALYAA
ESWLRRGARPRA
>RHE_CH02009 putative integrase protein
MPKLYLTDTLVLTLRCQAGRRQCIYWDHPVGTDGRTRNGSVSGLGLKVTN
LGRRTFIHDYRFNGERYRKILGTPANLSVASARLLIGERQQQLDAGTNPD
ASEAGPEVEFNDAQTLTVRSVIDRYWESYIYGLTEGYRDAFALYVADWRK
RAPKTATRRGHNIKRSYVDFGTMFANRSLTSIKPLDIERYQKQFSSLYSH
NDALKHVRAVFNWAIRMQLVDMRNPCDPIRLRKVIRRRRDYSTEQIRKIA
SYIFHPVIEAVPEIEGLTGFQKRNAALAKGAAQTANDQMLELCNLMGILF
LTMARPSDLATAKFEHFDLEKLVWHKHNTKGIKLSRSMNEYAYRSVPIHP
RVAQMVRAQRARWPESELLFPSHTDASQPRDNFRRGLVRFKALPDAPEYF
QLYDLKRIAISLMLAGQGVSHEAISHYVDHKGNLETTMIYDLGLVDPLRP
VTEKLGDLLGV
>RHE_PF00108 probable DNA (cytosine-5-)-methyltransferase protein
MSVDPKLIRQKIQRLDAGARPRVLDLFSGCGGISLGFQSAGFEIVAAVEN
DPDAARSHGLNFHHGEDRHSIPRNITVTSPAALATALGLGAAASAFDVIV
GGPPCQAFARVGRSKLREIAEHPEAFRHDSRARLYIEYLAYVEACAPLAV
VIENVPDMLNHGGHNLAAEIGEILASKDYVVRYTLLNAAFYGVPQMRERM
ILIAIRKELADDVEFPAPTHWIDLPSGYQGSRAVALKLATGRDLLTEATG
GSAYKAAPEAVETLAPAVSTQQAIGDLPEIMARELLAEGALRRGTRRLDA
MLPYGGHNQQNDYVKEMRTWPGFEGSSHVRDHVIRYLPRDYRIFAGLKPG
DQYPEAHRYALSLFEAELERLHAQGKRPEDGSSEWDALKAAFVPPYDAGK
FPNKWRKMEATTPARTLLAHLGKDGYSHIHYDSRQARPISVREAARLQSF
PDGFRFAGTMNPAFRQIGNAVPPLLARAIAQTLRSQLVRGVATEDLPRVA
GAGR
>RHE_PF00327 hypothetical conserved protein
MTISPTNMSPESGTDDARSFDTRQAEADRQTALEAARRNARSTLDRDGGT
ETPSLKLAKEYLSLGGRRRSKIDDNITKVRQWEKDPPEAERFWKERVETL
SDNERKQVEDFLPTINWP
>RHE_CH00836 putative methylase protein
MRIVGGEFRGRPLAVPKSNDIRPTADRTRESLFNILSHAYPECVDGTRIL
DLFAGTGAVGLEAVSRGCRHALFVENSVEGRALLWENIDALGLHGRTRIL
RRDATDLGSVGNLEPFDVLFADPPYGKGLGEKAMAAAAVGGWLRPGAIAV
LEERADIVVSVHSSYVFLESRIFGDTRVHFFRYQPQ
>RHE_CH02439 probable uracil-DNA glycosylase protein
MIDQAKRETLRREIAACRICRDAPAGGPEHRLPHEPRPVAVISARARILI
AGQAPGLRVHESGLPFDDASGDRLRSWLGVDRASFYDRSRFAIVPMGFCF
PGYDDKGADLPPRRECAPFWRQRVIAAMPQIELVLVIGQYAQAWHMADEK
RGNMTETVRAWRASLLSGRSPAVLPLPHPSWRNSGWLKRNSWFEEELLPV
LQERVKMLLS
>RHE_CH02721 putative NTP pyrophosphohydrolase protein, MuT/nudix family
MKFPTSDISDDFLDWPPEATVFPIAGVDLRVLPGTHPFVTAEEAAIRENW
AKETAANPALFDGRLVFQQRLSFSQEGIAGEGYVTPFSAFMWWRRQPQRQ
GGLHIFAYPVLESSDGALVAIRMGAHTANPGQVYFAAGSLEPEDIIDGRC
DIEANMRREVHEETGLDLADAVAAEGLFASHARRTVTLLRLFRFDMTADE
MVERIEAHMLVAEDKEIAGAAAIRSADPAAHPYNVAMLPVIDWYFGSGNR
R
>RHE_CH02252 putative endonuclease protein
MTGFVYMMSDKPRGVIYTGVTSDLHGRIWEHRNEIHKGFTQKYRAKNLVW
FENHPNIVLAIQREKSLKRYMREWKIKLIEELNPTWIDLYERIDEIENVY
RPHPNTREWNDYN
>RHE_CH02363 probable ribonuclease H protein
MTAGVPEAQHGLHVFVDGCYDPCSGHGGWAFVVYREAAEIASSFGGVRDS
ANNSMELTAVLQAVMWINSEATGEAATIWSDSIYAVKGCNDRRHIWKNNG
WKKSGGNGNARSRTIANTELWKAVDLQLSQNALVTIAWCKGHSGIAGNER
ADELADGGRLSARGT
>RHE_CH02833 probable DNA polymerase III, epsilon subunit protein
MKTIAIDFETANEQRGSACSVGLAWIEEGRVTRVEERLIRPRDMRFSGMN
IAIHGIRPEHVEDAPEFPEVMDEFHEDISGATMIAHNAAFDFSVWRASLD
LYRQSYPELTYLCSLKMAQRIWPHFLSHRLNLIAEHLGLRFMHHNAAEDA
AVCAAAAIEMAKAVKAKAVEAIPALIGMTPGRLTARGYAPCTCRKG
>RHE_CH00519 probable insertion sequence transposase protein
MTRPYSNDLRERVIAAVVDGQSCRVVAERFNIAISSVVKWSQRYRATGSV
SPGKMGGHRRRVLEPHRAFIVEQIEQTSHLTLHRLKDELAARGVSVSHNA
IWQFMRREGLSFKKNAVRP
>RHE_CH02011 putative insertion sequence transposase protein
MIPAGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGSLYVFRAKRADR
VKIVWWDGSGVCLYSKRLEKAQFCWPRIGHNRVQLNHAQLMALVDGMDWK
RVRSVAVKPPEIVG
>RHE_CH01739 hypothetical protein
MATTLIAEIHQAQTRLPFLSRAERGALIVRILRELKILRREVLGSVPADR
CAWIDKLIASVSSTVSEIVTMPDAEFNRVLNEFEKLMATLHNISHPQKPS
KTVH
>RHE_CH00774 probable insertion sequence transposase protein
MIPVASGVKVWLATGHTDMRKGFPGLSLMVQETLKRDPMCGHLFVFRGRG
GGLIKVIWHDGQGACLFTKKLERGRFVWPSATDGSVVITPAQLGYLLEGI
DWRMPQKTWRPTSAG
>RHE_CH00520 probable insertion sequence transposase protein
MAPLRGWGPRGKRLRGFAPHGRWRTLTFLGALRCDKLTAPCVFDGPINGE
CFHAYVRQQLIPTLKPGDIVILDNLGSHKAKAIRDAIRAVGARLWFLPKY
SPDLNPIEQAFAKIKHWMRQAQKRTIEETWRHLGILADTIKPEECANYFS
NAGYASVKT
>RHE_CH02016 putative insertion sequence transposase protein, IS66 family
MARIEIMSGTERRRRWSDEAKLRILAEADEPGARIGDVARRHDIHPGQIR
LWRQSFNYADRPTVFLPVEITEEVGVSQPSTASTRPTIVEILLRNGRSLK
VAVDVELKLLGPLVACVEAV
>RHE_CH03058 probable insertion sequence transposase protein
MSAPSSGTRTFHMIEAVADRFEGAPRQLRRRWSDDFKARAVAEALEPGSS
VSAIARRLDIHPSQLFGWRRAALGSHKENIAPIGHKAVTPSADGAIIEVL
IGDVVVRAPADVDEAHLQRVIRAVRSA
>RHE_CH00688 hypothetical conserved protein
MIEKSRSQKLKRLLSVQRHIERMAENDLAETSRQRIEVNAAMDDVIVALG
SMDPVHHAFSQNYADRFGRLTIKDQQLTGMQQIHEMRLSRERAKADRLEE
GMKGALDAERREADDNAVYDVIDQQFATPASSKLQKP
>RHE_CH01993 probable resolvase protein
MIYGYARVSTKKQDLAYQLDRLRKAGCERIIHEKKSGKDTKGRPEFLRLL
AGLEPGDVLLSTESDRVARDPLDLVLILREVESAGAQLRLLDEPYIDTAF
DFADVIAYFRGWVGRMQRLRILANTANGRAMAKARGVKFGRKPKLSERQR
AQVMDRKARGEPCARIAQAFSVSESTISRVRGAER
>RHE_PF00107 hypothetical conserved protein
MRTVLPVANIAILPDSMLHQSAPLCTTFHHKGRGCTGSDKSPSWLVEGRK
SQFRSVGPALRIFRPGAHRRKCFPLSATGGCLLRPVEIAPSPYALLRSLR
GLGYSPETALADLIDNSLAAGARQVRIHLDWRDGNPLVEILDDGTGMNFD
RLVEAMRFGGAGPSAERQGGDLGRFGLGLKTASLSQCRELTVASRREGLV
ARLTWDVDRVGEGWSAVEPDASPSGELATEFQSSGNGTLVSWSRMDRLGG
LWGLDRDTFNDRISDIRAHLAMTFHRFLSGETRRLAMSVNGRALNAWDPF
CRWHDATMALPRDIIRGSDGAITARPYILPHRDRFANEREWEDAGGPGGW
VERQGFYVYRGDRLVSAGGWLGLGGARAWTREESSRLARIALELPASMDE
AWRIDIRKSVARPPAWARGRLAGLGADCRRRAREVFAWRGVGAGRKGRRS
NTDGEAWPWEARSAKAVPRYRVRREHPAVSAVAQALGAESGLLEGLLSAL
ELTVPVERIWLDVAEQGGAELMQPAATEIAELATPLATLVRSMDNMDNTG
DRLDSVLRSLGITQPALRAAVIRILGEN
>RHE_CH00777 probable insertion sequence transposase protein
MTPPDLQLPDDVETLKAMVLAMAEKAARTDALESEVADLKARNADADERI
ERLTQILKAFDRARFGRQSEKLGSPGIDDEQQAFVFEEIETGISAIRAKV
NKGAADPDAKRAPRPRKGFAPHLERVEVVIEPDELHEHIGKQKVLIGEDV
SERLDVVPAKFRVIVTRRPKYAFKNEDGVIQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGYELDILADYI
LAEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRPFGGSGPPMV
AYRFEDSRAGDRVARHLNGYRGILQVDGHGAYNKLARSDGGNDGVMLAGC
WSHSRRKFYELHASDSSKIASETVELMAKLWEVEAAARGQSPDARVAARQ
ATSAAVVTELFALWQKTLPRISGKSKLAEAIRYATSRRSIFERFLTDGRI
ELDSNIVERAIRPQTITRKNSLFAGSDGGGRTWATIATLLQTAKMNNVDP
QAWLTQTLERIANGWPSSDLDALMPWNYAR
>RHE_CH00782 probable insertion sequence transposase protein, IS1111A/IS1328/IS1533 family
MEKITTIGLDIAKHVFQVHGINGAGATVNRRKLRRDDVVGFFKALPPCLI
GIEACATGHHWARVLMALGHEVRLMPASYVKPYVKRQKNDATDAEAICEA
VTRPTMRFVPVKSEEQQGVLMRHRVRELLIRQRTMLVNALRGHLAEFGIV
TRQGIAGVGMLIALVDDDDHDLIPPLARSALLPLIGQLREVHEKVRELDR
QIHAWHRSNELSRRLETIPGIGPITASAIAATVTDASFFKSGRQLAAWIG
LVPRQNSSGGKDRLGRISKQGDPYLRRLLVVGAHAVLRFSGKAKVAPTRW
AAELLPHNFVAVALANKMVRIVWALMTTGRRFEATAAL
>RHE_CH01183 hypothetical conserved protein
MTVWRPPQQIRVKVIGLAWRENRLLAAEVEDDSGRIKGVRPLGGSIEFGE
TREQALHREFNEELETAIRIVGSWHLLENIFEHHGAIGHEFIFAADVELA
DKTLYDRDEIRYCELDETAATARWFGRVMLRDAGIDLYPTGLEKLLSRWL
D
>RHE_CH03050 probable NTP pyrophosphohydrolase protein, MutT/nudix family
MNDAISQRYPLFSAAEFRRRALNQNGGPVDHAWRDHGDHVLNPDIVEEVA
TFNLRDAAVLVPVVDDGEEARVIFTKRTTTLRKHSGQIAFPGGSIDPADI
SPEMAAIRETEEEIGLPASFVETVGRLPNYLASTGFRITPVLGVVERGFA
LTLNPAEVDDVFEVPLSFLMNPANHRRDRRIINGIDRHFYRMPYETRMIW
GITAGIVRTLYERLYA
>RHE_CH00780 probable insertion sequence transposase protein
MSAPSSGTRTFHMIEAVADRFEGAPRQLRRRWSDDFKARAVAEALEPGSS
VSAIARRLDIHPSQLFGWRRAALGSHKENIAPIGHKAVTPSADGAIIEVL
IGDVVVRAPADVDEAHLQRVIRAVRSA
>RHE_CH01485 putative ADP-ribose pyrophosphatase protein
MTQPKSRMKIVSEQTLSNGWTRLSSYLLDYIDRKGATQQLKREVYHRTPA
ACILLYDPKRELVVLVRQFRLAVHLNGDPAWMIEVPAGLVDDDHPEQAIR
REAMEETGYHLRDARFLFKCYPSPGAITEVVHFFVSLVDITDRMAEGGGL
DEEHEDIEVLEVPLDEAAQMIENGEIFDAKTIMLLQWALLNRNKLR
>RHE_CH00241 putative recombinase protein, phage integrase family
MRRKGSTFIQFRKRIPKDVIDKAGGVTLAIPVGDEVLHIVVGDKATEITG
SLRTRDPREAKERQTVALAYLDSAWQSLREGPKRLTHKQIAALAGEAYNA
LVATFEDDPGSSETWKQIIQLHAKALSGDHDAREKWFGPTVDQTLAKHRL
IIDNDSRTALIDAVGVSLSLASVRLAQNAEGDYGPDTIAPRYPPLELPKE
TKTTKPLPNGSQTIIGLAEGWWREAKAAGRTVSTYDAYSRAARLLSEFVG
HDDARAVTQDDIIAFKDHRLSQGVGLKTITGGDLPGIRQLYAWGMANRKV
SHNPADGVKVAKVKKKRVRNPEFSDEEAGALLAHALHHKRTGKASEHLSN
AKRWVPWLCAYTGARVGEMVQLRKQDLRAEAGIWIIKITPEAGTVKDAEF
REVPLHPHLIEQGFPEFISKATDGYLFMKVFGDTEEAQRAAWRTTKNRVT
DFAREVVTDPEVQPNHGWRHKFRTVAREAGISRDISFSITGHDSKDEGDK
YGTVTNKAKAAALAKYPRYEVKPLENP
>RHE_CH04118 putative DNA polymerase III, delta subunit protein
MAEIKSHEFETFLQKSAGNYRIFVIYGPDRGLVSERAGQLAGKTGVALDD
PFSLTKLDIGDLQKDPGRLVDEAQSIGLFGGEKLIWIRGAANEKYLVDSL
ALLAEKPLEAAYLIVEAGDLKKGSLLRKTAEAARSVMTIPSYADDSRALN
GLIDAELGAEKLGITPAARQALIALIGGDRIASRNEVRKLALYCSGLNTV
EEHHVSEIIGDASAISVDDAVDAVLSGDLNGFLHAMQKISSSKTAIFLVL
QACLKQFQLLDMMRAEMEEKRVQAPQIMQTMGRHLHFRRKPIIEQALRHW
SAENIARESNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGRKST
>RHE_CH01967 putative site-specific recombinase, phage integrase family protein
MKTALRHGWISHLPDFSAPYRASGKITHRAWFSPEEYKRLYTHTRERVRA
TQGTSWEHAVAQMHDYILFMANTGLRPDEANRLEYRDVTIEQEEQDGERI
LVIEVRGKRGVGYCKSTSGAVHPFERLVKRNTPKPTDLIFPQDHKKQFNR
VLEHCELKFDREGNRRSAYSLRHTYICLRLLEGADIYQIAKNCRTSVEMI
EKHYAVHLKNTLDAKAINVRRRTRAVVDA
>RHE_CH00237 probable insertion sequence transposase protein, ISRm14
MARIEIMSGTERRRRWSDEAKLRILAEADEPGARIGDVARRHDIHPGQIR
LWRQSFNYADRPTVFLPVEITEEVGVSQPSTASTRPTIVEILLRNGRSLK
VAVDVELKLLGPLVACVEAV
>RHE_CH00239 probable insertion sequence transposase protein
METAPLDSQDELNTLRALVAEQAAKLESQEAEVIKRDSIIGLLRAQLELL
RHRQHGASSEKIDRKIEQFELMLEEIEASRAEAEQRSGKPPLPELDDASE
KPKRKPLPDDLTTEELVYAAPCNCPTCGGTSFLKAADRVVQVLEHVPASV
KIVRHVEKRMICRECDTTVAGEMPTLPIERGKPGPGLLAHIMIAKFDDHI
PLYRLSEMYDRLGIDISRSVMADWVGRVSALLTPLVLLIRAHIAALDRIH
TDDTPVDVLDPGRGKTKTGRVWVYIFDGSGYQSATPAAIAYYYSPDRRGA
HPADHLASFSGVMHADGYGGYKKLYGNQIIEAACMAHVRRKFHDVIKLKP
SPIAEEALSRIGALYDIENRIRGMSADERRTLRQHHARPVLDELKAWIEA
TLSTLPQKQRLAEAMRYALSRWAALSVYIDDGRVEIDNNIAERAMRPLGI
GRKNWLFAGSDKGGERIANILTIIETVKLQGHNPEVYLTDVLTRIQDHPE
DRIEDLLPWNWTPAKARCEAA
>RHE_CH01332 probable insertion sequence transposase protein, IS10
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPT
KARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSD
IREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASIL
PSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPI
SNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCH
HPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKS
PAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQA
NTVRNRNVLSTVRLGMEVLRHSGYTITREDLLVAATLLAQNLFTHGYALG
KL
>RHE_CH03906 hypothetical conserved protein
MVSGTPPRHSKSADEPVTIDLDSQDFASVADTEKPVDTDAGETESTTTGA
DLPPESEAVSQPEQESEAEAAAAEETPAATEPSFPPRTDQPAPKGAGTSG
LIAAGIFGGLVALLGAGAIQYAGYLPSSSAPQTASSEIADLSGEIDGLKQ
TVANLAANPASTGDSALGTRVAALETTAKQANVEALNQKIAELSGQVEQL
RSTLAQSSEQQTSNGADIAKRLDEAEKKLNEPRQDVAVARAIAAAALKAA
IDRGGPFLAELDTFAGVAPDDPAVADLRSFAETGIPSRAELVRQVPDVAT
AIVEAVNQPDPNQSWSDRLMASAKSLVTVRPVGNIEGESVEAIAARMEDK
VKNGDLSGASAEWNALPALGKQASAAFKQSLEARIRVEELVGGALSKAVS
GTAKEG
>RHE_CH03355 probable 3-methyladenine DNA glycosylase protein
MLSASVMTDGGMTKDAIGAGALAGEGLRAFFERDAITVARDLLGCHLTVD
GAGGRITETEAYFPDDEASHSFRGPTKRNGAMFGRPGNVYIYRIYGMYWC
LNFVCHPGSAVLIRALEPETGIAAMMERRGTDMLTALCSGPGKLCQALGI
DIEINDRLLDLPPYALTPSTPVPIVAGKRIGITRNAEAPWRFGIQGSRYL
SKPFR
>RHE_CH03057 probable insertion sequence transposase protein
MIPAGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGSLYVFRAKRADR
VKIVWWDGSGVCLYSKRLEKAQFCWPRIGHNRVQLNHAQLMALVDGMDWK
RVRSVAVKPPEIVG
>RHE_PF00426 hypothetical conserved protein
MNDCEWERRKVTAGRVFSGVWRLPLIAPFVLATILYSRHASAAPEDGQWS
QDPGSHCSFVAPASLTAGPTFWIGACVDGKASGEGMLRRRDGDKAGPAFF
GRMKDGIPEIGIIDLADGYRAGSFSDGDIGGQADPDPQDRIDAFRIAAKA
ARLARAKYAAEKNAGSARHYEELAQTLEQQTD
>RHE_CH00732 probable exodeoxyribonuclease III protein
MPQTRQAFRRLENLGLTDAVRATTDATRLYSFWDYQAGAWPKNNGIRIDH
LLLSPEAADRMTSAAIEKHVRAWEKPSDHVPVIAYFDFAA
>RHE_CH02434 hypothetical conserved protein
MARFGIVTDRALGISNPDIRAVARLAKRDHIRAKQLWQSDIREARLLALC
TAEPKRLTAEEARSWANDFNSWEIVDCAADLFVEARLDELIPEFAADRRE
FVRRAAFAMISGAAVHRKNESDMTILAWLPLIETHSRDSRNFVRKAINWA
LRSIGKRNRGCHGPALTLAKLLAESPDKTARWIGRDAVKELSGEKLMARL
K
>RHE_CH01490 putative DNA replication initiation ATPase protein
MSDVKNADPKRKAGEQLPLAFSHDAASGRDDLLISERLAAAVSIVDAWPA
WPSPVVVLAGPVGSGKSHLARIWQELSGAVSIHPGLGSDAAVAAAAGPVL
FEDADRLGFDDNALFHVINSVRENATSLLITSRLWPISWPVLLPDLRSRL
KAATVVEIGEPDEVLLSQVIVKLFADRQLYIDDKLVLYIVNRMERSLNAA
QTIVERLDRLALSRGTKITRALAAEVLNELGNSEPAD
>RHE_CH01057 hypothetical conserved protein
MKLRATMDKIKATKPAVKYSGGRKNLIWIKPKLVAEIEYRSWTHDGKLRH
PSYKGLRDIADEVAIYAFE
>RHE_CH00869 hypothetical conserved protein
MREQSLAGQAAFAPANTADIADAMIVSSGLRVEVDRRRGRGAGLNPTGRF
EALQRETFDDGWQTLEELPPFKTEVQIEKPRTAITRNESPDTSFDRSINP
YRGCEHGCIYCFARPTHAYMGLSAGLDFETKLFAKPDAAKLLERELAKPG
YKVRVIAIGTNTDPYQPIEKEWRIMRGILEVLNKANHPVSIVTKSAMILR
DLDILQEMAGKNLVRVGISVTTLDRKLARAMEPRAATPPRRLETIHALSE
AGIQTAVMAAPLIPALNDHELERILESAKAAGAAEASYVILRLPLEVSPL
FRDWLLQHYPDRYRHVMSLVRSMRGGKDYDAEFGKRMKGAGPYAWQIARR
FEMAARRFELTRRSVPLRDDLFVPPDGSGVQLSLL
>RHE_CH01639 probable DNA processing chain A protein
MDAPSAGSKGTVLSERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALA
ALPELSVRGGATRAIRIASEAEAHRELEAAHRFGARFVGIGEPDYPQALK
QIDGAPPLLAVKGALAAAKRPAVGIVGSRNASAAGTKFAAMVARDCGRAG
YTVVSGLARGIDTSAHRASLGTGTIAALAGGLDKPYPPENLGLIEEITGG
NGLAVSEMPFGWEPRARDFPRRNRLIAGIALGLVVVEAATRSGSLITARL
AGDFGRLVFAVPGSPLDPRCHGTNGLLKDGASIVTEPADVIEALAPLAQL
ELFPSSRAEAPAGESKPITMPPGDSDRMRIIDALGPTPVEIDDVIRHTGL
PASAVYLILLELDISGRLHRHQGGLVSLSD
>RHE_PF00063 hypothetical conserved protein
MKSLSPIAGKTILIIGEAGFLSDDARKAFVALKAVLAGPVVVSSAMECLS
EGLLFDAVIIDVTISDEAMLWMNEWLETRRIPFIFAHSERSETPPGGFVV
SGRPSDIDAMIAALFGADPSYYH
>RHE_CH00423 ada, methylated-DNA-[protein]-cysteine S-methyltransferase protein
MLFERPDDDTLYDALIARSADYEGQAYVCVKTTGVFCRLTCPARKPKREN
TLFFETIAACMHSGFRPCRRCRPLEQPGREPIVDALLARLEEEPEVRWSE
DELVRRGHDPSTVRRAFKRALGMTFHDIVRYIRLGEAARQLAAGARVIDA
QIDAGYETPSGFRAAFQRLVGKAPALSQNRELLFADWFDTPLGPMIAVAD
KTHLHLLEFHDRKALLSELEALQKRVRSSVAIGRTPAIDQIEAEIRDYFE
GRLTVFKTPLALGGTPFEKHVWARLMEIPLGQTRAYGDLAREMERPEVVR
AVGRANGANQLAIVVPCHRILGADGSLTGYGGGLWRKQWLLRHEEKIGTE
TRMEETA
>RHE_CH03785 alkA, DNA-3-methyladenine glycosidase II protein
MLSSATDFSFEPLGGRVQIIRNDDDVRLGLEALLRLDPRLAPIAAEAGPI
PLRLREPGFAGLAHIIVSQMVSRASAEAIWRRMLPADGPLTAEGYVLLAP
EAWREFGLSRAKADTLSRVAEAVASGHLDLSGLCLKPPDEALGELTALKG
VGPWTAQVYLMFCGGHADVFPAGDVALQNAVGAALGLAARPQAKPLARLA
EIWSPWRSVAARLFWAYYVTKMRRDMVPIG
>RHE_CH00039 alkB, alkylated DNA repair protein
MPELLNGIRHLPGYLDRAHQEELVELIRAVVTEAPLYVPVMPGTGKPMSV
RMTNCGPLGWVTDKERGYRYQPTHPATGRSWPQMPKLLLDIWNDVSGYEK
PPEACLVNFYSDDARMGLHQDKDEQDLQAPVVSISLGNSCRFRIGGLNRN
DRTLSFKLASGDLVVLGGEGRLCYHGVDRIYPATSTLLKNGGRINLTLRR
VRP
>RHE_CH00995 ccrM, site-specific DNA-methyltransferase (adenine-specific) protein
MASVFPLADLKASVKPGSRTDSWVDTIIKGDCVSALEALPTHSVDVIFAD
PPYNLQLGGTLHRPDQSLVDAVDDEWDQFASFEAYDAFTRAWLLACRRVL
KPTGSIWVIGSYHNIFRVGATLQDLNFWILNDIIWRKTNPMPNFKGRRFQ
NAHETMIWASPNAKAKGYTFNYDAMKAANDDVQMRSDWLFPICNGNERLK
GEDGKKVHPTQKPEALLARVIMASTKPGDIVLDPFFGSGTTGAVAKRLGR
HFVGIEREQDYIDAASARIAAVEPLGKAELTVMTGKKAEVRVAFNVLVES
GLIKPGQVLTDAKRRYSAIVRADGTVASGGEAGSIHRLGAKVQGLDACNG
WTFWHFEDGQSLRPIDDLRSVIRSDLAKVE
>RHE_CH02179 deaD, ATP-dependent RNA helicase protein
MTEFNGVVPAIAKALQKRGYAELTPVQQAMLDPALAASDALVSAQTGSGK
TVAFGLALAPTLLDGHERFGNAGAPLALVIAPTRELALQVKRELEWLYEM
TGAVIASCVGGMDIRSERRALERGAHIVVGTPGRLCDHIRRRALDMSDLK
AAVLDEADEMLDLGFREDLEFILDSAPDERRTLMFSATVPAAIAKLAKSY
QRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLRYYEATNAIVF
CSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPL
NARRKAERLLENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEE
QGLVQQLLSSHGAEKLAAAFLRLYRTNHSAPEDLIEVTVQDGGSRKRRDN
AESYEPAQKGPREDFGPSVWFSVSVGRKQNAEPRWLIPMLCRNGNVTKRE
IGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVTRLSGTPDFSR
AAAPKPYAGKSSRDERPGEAFRDERPKKKFGKGSGGGYAATDNAGQERRD
SKPWSKKPGKPGFDGPQSDKPRYDKPKFEGGKFEGKGGAGPKNKFSKKKP
G
>RHE_PF00149 dinB, DNA-directed DNA polymerase protein
MTNDEGLERPRKIIHIDMDAYYASVEQRDNPELRGKPIAVGGSAARGVVA
AASYEARKFGVHSAMPSVTAKRKCPDLIFVPPRFDIYKAVSQQIREIFAE
YTPMIEPLSLDEAYLDVTHNLKGMEIATEIALEIRARIKAITGLNASAGI
SYNKFLAKMASDLNKPNGQAVITPRNGPAFVEALPVKKFHGVGPATAEKM
HRLGIDTGADLKGKTLEFLVEHFGKSGPYFYGIARGIDERQVKPNRVRKS
VGAEDTFSQDLHAYEPAREALQPLIEKVWGYCEANGIGAKTVMLKVKYAD
FNQITRSKTVPIPLAAIADLEEIVGLLLAPIFPPRKGIRLLGVSLSSLER
RAAGTEPQLRLAL
>RHE_CH01629 dinP, DNA damage inducible P protein
MTPAPDKTPGFCRDCLAEQKGEARRCITCGSPRLVRHGELYRLTLAHIDC
DAFYAAVEKRDNPELADKPVIIGGGKRGVVSTACYIARIHGVRSAMPMFK
ALEACPQATVIRPDMEKYVRVGRQVRALMQDLTPLVQPLSIDEAFLELGG
TERLHHDPPARTLAKFARRIEKEIGITVSVGLSYCKFLAKVASDLQKPRG
FSVIGREEAVEFLAPRPVTTIWGVGKAFAATLEADGIRTIGQLQQMEEND
LMRRYGSIGQRLARLSRGIDDREVHLNDAAKSVSAETTFFDDISRYDDLV
PILRNLSEKVSWRLKKNDIAGQTVVLKMKSADFKTRTRNRKLEDPTQLAD
RIFRVGLELLEKETDGTKFRLIGIGVTDLGDATRADPPDLIDRQSGRRAA
AEAAMDKLRDKFGKNTVETGYTFGSSKRDH
>RHE_CH00358 dnaA, chromosomal replication initiator protein
MQMNTMMAGGLDNGDAAPQAFGSIRQEVGEAKAEMKQSILFERVSARLKA
QVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLFQ
AEDPEIMKIEILVRTATRSGMKAADEVVQPEPAAPAQMRRPPSAQPAGQA
VQQAVSAVAAARPASLGTPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTI
AEVGSGAVRFNPLFVHSTVGLGKTHLLQAIANAAVQNPRALRVVYLTAEY
FMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHLLNM
LLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEIL
KRRLAAARLEDPSLEIPADLLQHVARNITASGRELEGAFNQLIFRRSFEP
NLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSNRRTR
VIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGD
TKLSHEIELLKRLINE
>RHE_CH01436 dnaB, DNA helicase protein
MNDAARKIAAVAPSEQHYREAPNNIEAEQALLGAILMNNDAYYRVSDFLK
PIHLYEPLHRKIFEVAGDIIRMGKIANPVTIKTFLKADEKVGDMTVSQYL
ASLVSNAVTVINAEDYGRAIYDLALRRALITIGEDVVNIAYDAPLDMPPQ
SQIEDTERRLFELAENGRYDGGFQSFNDAVALAIDMAAVAKERDGGLSGI
STGIHSLDAKMGGLQRSDLIILAGRPGMGKTSLATNIAYNIAAAYEGEVQ
PDGSMKAKNGGVVGFYSLEMSSEQLATRIISEQTEVSSSKIRRGDINDAD
FEKLVACSMMMQKVPLYIDQTGGISIAQLSARARRLKRQRGLDVLVVDYV
QLMTGSGKSSDNRVQEITQITTGLKALGKELNVPIIALSQLSRQVESRDD
KRPQLSDLRESGSIEQDADVVLFVFREEYYVKNQEPRDPHDPKYPEWEAL
FDKVKGTADVIIAKQRHGPTGTVKLAFQAEFTRFADLADPSFIQYEEH
>RHE_CH01627 dnaEch1, DNA polymerase III alpha subunit protein
MAETEKGSTGEATGGTPGFIHLRVHSAYSLLEGALPLKKILYKATGDNQP
AIAITDTNNLFVALEFSQKAMDEGLQPIIGCQVSIDMEDGLESEKRGGQQ
ALIKLPSIVLLAATEAGYERLVDLVSRAYLGGDSNQAVHIRASWLEEAGT
EGLIALTGALTGPVDAAVREGHPAQAEARLLTLKRLFGDRLYVELQRHGT
YDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVS
DDSRFRLTPDHYLKSRAEMARLFADLPEALENTIEIAKRCSFVLKTRKPI
LPRFTGATDDAEEAERAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRE
RLEFELSVIERMRFPGYFLIVSDFIKWAKQHDIPVGPGRGSGAGSLVAYA
LTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQAKYG
REQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPANPTPL
SKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRP
LSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGINVDLAAIPLDDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPD
CIEDIIALVALYRPGPMENIPVYNARKHGEEEVESIHPTIDHLLKETQGV
IVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAEMDQQRERFVEGAVK
NGVKKPQADVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYPVEFL
AASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYA
LAALKGVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYA
GAFDCFGTDRAQLAAGLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKI
SLPPYSPWLASERLLKEFQVLGFYLTAHPLDSYNNILQKMRVQTFAEFSA
AIKQGAANARLAGTVISKQERKTRTGNKMGIIVFSDSSGQFEAVLFSEML
NQYRDVLESGKSFLLTATGEERPEGIGLRIQTIQSLEEKSLQMQKALRVY
IRDSGPLKMVAGHLNAKGDGLVSFIVIKEEGKREVEVALPEKYRITAEIA
AALRAAPGVVDVELV
>RHE_CH04083 dnaEch2, DNA polymerase III alpha subunit protein
MTEPAFFEIGARTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGV
VRAHAQALQIEEKYKNRHEADFQTWEGEEILDPIRVQPGARLVFSDGTPD
ILAYPSNRRGWANLCRLLSAGNLKEEAVKGTCILTETEFMEWGDEMMLAV
VPDRTLVDHQRGQSALEDYLERFRRRFRKAFFMALAPAYDGRDRQVFAVL
ATLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREHVQISQAGFLLAPN
AERYLKGSREMVRIFRDYPGAIENTQAFFGRLSFSLKELEHNYPPENDPG
ETPQETLERLTRAGAIKRYPEGVPPKVVKQIDYELKLIGDKNYASYFLTV
HRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVNPEKSTLLFDRFISM
DRDEPPDIDVDFEHDRREEVIQFIYRTYKREHAGLTAGVTTYRTRSAGRE
VAKAFGLSEDVQSAISSLVWGWSEDNLSDRDAKAAGLDVKDPVTQNVLKY
ASELLGFPRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLD
NVKILKVDILALGMLTCLRKAFSLLELHYDVKKALADLGNREHGEEGRPV
YEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVIEVAIVRPGPIQGD
MVHPYLKRREQRARNIPIDYPSKELEAVLERTLGVPLFQEQAMQIAITAA
GFKPAEADKLRRAMATFKRTGTIGDFEKRFIEGMVSKNYDPEFAKQCFNQ
IRGFGEYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAP
AQLVRDAREHGVKILPVDINESDWDCTLEEASFDREAIDFRHGEMGGIIK
TRHAVRLGFRQIKGLSSDDMERLVDNRGQGYGSVRDLWLRSGLQKSVIER
LADADAFRSIHLSRREALWAVRALDVKSAAEELPLFEQVRHLDLQPEPAA
KLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREELRKAGITRNVDLLTVPN
GKRVTIAGLVLVRQRPGSAKGVIFMTLEDETGVANAIVWNKMFDKYRAVV
MGARLVKIRGRLQSHSGVIHTVVEHIEDMTPALDILQREARRFGACERAD
EVLRPGVDPRQRKFATAQEKAELERRMGAAGRHGGAAETAEVMPRGRNFH
>RHE_PF00152 dnaEf, DNA polymerase III alpha subunit protein
MRYAELQVTTHFSFLRGASSAEELFATAKLMGIAALGIADRNSLAGIVRA
LEASRATGLRLVVGCRLDLQGGMSIIVYPTDRTAYSRLTRLLTLGKGRGG
KANCILHLKDVAHYSEGLIGILVPDMPDDGCAVQLRKMAEIFGDRAYVSL
CLRRRPNDQLRLHKLSNLAAQHRVKTVVTNDVLFHEPGRRQLQDVVTCIR
TGTTIDDVGFERERHADRYLKPPEEMARLFPRYPEALSRTAEIVERCRFS
LEELVYQYPEEALIPGMTAQQSLEHYTWEGVKTRYPEGLPAHVEKTIRHE
LSLIETMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYVLGITSI
DPETNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTYGHDKAAL
CSTVTRYRAKGAIRDVGKALGLPEDLIKALSSGIWSWSETVGENQVRALG
LNPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHLVPIEPAAM
ADRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLELA
TIPQEDPATYAMIRRADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAI
VRPGPIQGDMVHPYLRRREGKEKVEYPTPELEAVLHKTLGVPLFQESAMK
VAMVCAGFTGGEADQLRKSMATFKFTGGVSRFQDKLVSGMIRNGYTMEFA
EKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHFPDVFCAALLNSQP
MGFYAPAQIVIDARKHGVEVRPVCINRSRWDSTLEEVEGTERHSVRLGMR
LVRGLATADAARIVAARADEPFASVDDMWRRSGVPVASLVELAEADAFLP
SLRLERRDALWAIRALRDEPLPLFTAAAEREARAIAEQQEPDVELRQMTD
GHNVVEDYSHVGLTLREHPLRFLRADLTQRRIVTCAEAMAARDGKWLMVA
GLVLVRQRPGSAKGVMFITIEDETGIANVVVWPKLFERSRRVVLGASMMA
INGRIQREGEVVHLVAQQLFDLSADLSGLAGRDGAFHPPTGRGDEFAHGS
PGSPDSREKAPPGVRARDMFTPDLHIDTLKIKSRNFQ
>RHE_CH02954 dnaG, DNA primase protein
MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKS
PSFHCEDRKGRYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPM
PLADPVMEKREKERGSLIDVMEMATSFFQDQLQTANGAKARAYLRDRGLT
GRTIETFRLGYAPDSRNALKEFLAGKGVSKEQIEACGLVVHENVPVSYDR
FRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETELFHKGNVLYNF
ARARRAIQGPGRGDQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGTA
LTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFA
LLPDGKDPDDLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDTPEAR
AELEARLKQLVAVIGDENVRRHYQQDIRDRLNAFFQPQFQNRNSGERRGF
SGSPRNGRDNAAKAGPKSPSLISDRLARSGPVRGHRDNTALRESVLALTI
VNHPALMIDDYDEIAAIEYDSRELQRLWSAMLGAAAAVAGPHLTREYLTE
RLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRAK
ALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIID
GFGVLSGRVKGAANH
>RHE_CH00318 dnaN, DNA polymerase III, beta chain protein
MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLD
LEITEATPANVEQAGATTVPAHLLYDIVRKLSDGAEVLLATSTEGGSMTV
QSGRSKFSLQCLPESDFPDLTAGTFTHSFKLKATDLKMLIDRTQFAISTE
ETRYYLNGIFFHTIESNGELKLRAVATDGHRLARADVDAPSGSEGMPGII
IPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLIDGTFPDY
QRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLTV
NNPDSGSATEEVAVGYDTDSMEIGFNAKYLLDITAQLSGEEAIFLLADAG
SPTLIRDTAGDDALYVLMPMRV
>RHE_CH00005 dnaQ, DNA polymerase III, epsilon chain protein
MREIIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTLHIYINPGDQKVH
PDALAVHGITDEFLKDKKPFAAVADEILAFFGDGKWIAHNATFDMGFINA
EFARIGLPPILPDKVIDTLSMARRKHPMGPNSLDALCRRYGIDNSHRTKH
GALLDSELLAEVYIEMIGGRQAAFGLSISGQPGQAARGEMAMEDDMAFAA
ALERPRPLGSRLSRSEAQAHEALVAKLGEKGIWAKYASSN
>RHE_CH00126 dnaX, DNA polymerase III, tau subunit protein
MSDSERLSQDAASTGTGYRVLARKYRPKDFTDLMVGQEPMVRTLTNAFET
GRIAQAYMLTGVRGVGKTTTARILARALNYKTAEIDKPTIDLRTPGEHCQ
AIMEGRHVDVIEMDAASHTGIDDVREIIEQVRYRPVSARYKVYIIDEVHM
LSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRISA
SDLVGLFTTIAAKEGIEAEPDALAMIARAAEGSARDGLSLLDQAIAHGAG
AVQAEAVRGMLGLADRARIVDLFQHIVKGDVAGALGEFQSQYEAGANPVV
VLTDLADFTHLVTRLKYVPDAANDPSLSEIERTKAAEFAKSIAVTTLSRI
WQMLLKGIPETEGSSRTAGAAEMVLIRLAHAAHLPAPEDAARRLAEFSGD
NGGSRPSSAPSGGGGGGTRVPYQSSVAARAPDIAPSKPQPSVPVAMLRAV
PSSQPETTPVGRIEAKPAEAPKPLVKVNSVGDIVNLATEKRDAKLKAMVR
NFVRPVRIEPGRLDVSLTEGAPTTLLNELAVKLKEWTGIHWIVSLSRDEG
QPTLVEAEARTREQHVIDARQDPDVAAILAHFPGAKIIDVRVRAPEPEEE
GEVKPPAAAESEEGDILPGDDIEF
>RHE_CH00355 fpg, formamidopyrimidine-DNA glycosylase protein
MPELPEVETVKRGLAPAMEGARVTRLELRRRDLRFPFPDALAERVSGRTI
VGLGRRAKYLLVDLDDGNTLISHLGMSGSFRIEEGAASAMPGEFHHARSK
DEKHDHVVFHLEGGGGPRRVVYNDPRRFGFMDIVGRADLSAHPFFRDLGP
EPTGNELGATYLAERFRDKAQPLKSALLDQKNIAGLGNIYVCEALWRSHL
SPIRAAGTLVTSGGRPKQQLDLLVASIREVIADAIAAGGSSLRDHIRADG
SLGYFQHSFSVYDREGQACGTPGCGGTVARIVQAGRSTFYCAACQK
>RHE_CH02110 gyrA, DNA gyrase subunit A protein
MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMG
KYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTEC
RLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIA
VGMATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILG
RAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIPYQVNKATMIEK
MAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPL
QTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARER
AHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL
IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEE
IRDYLDILSSRVRIQTIVKDELSAVRDEFGTPRRTEIVDGGLEMDDEDLI
AREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVV
NTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTI
LPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGD
EILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEG
DRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEVTEE
GQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDT
SKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTI
FSTAKDEKVVSVERISEPEEDDTEGAVDAAEAAAGADETPFADETPVADG
DPGGAAEE
>RHE_CH00012 gyrB, DNA gyrase subunit B protein
MSDTSATENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMV
YEVVDNAIDEALAGHADIVTVTLNPDGSVTVTDNGRGIPTDIHSGEGVSA
AEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVWLKLKIRRHGKI
HEMSFTHGVADAPLKVTGDAPDSTGTEVSFMPSSETFTMTEFDYGTLEHR
LRELAFLNSGVRILLADKRHSDIKQEEMRYDGGLEAFVSYLDRAKKPLVD
KPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA
LTRQVVSYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKD
KLVSSEVRPVVESLVNEALNTWFEEHPSEAKILVGKVVEAAAAREAARKA
RELTRRKGALDIASLPGKLADCSERDPAKSEVFLVEGDSAGGSAKQGRSR
ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGKDEFNAEKL
RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVA
RGKSVQYLKDEKALEEYLIAQGLEDAALRLGSGEVRTGQDLREVILDALR
MRALLDNLHSRYNRAVVEQAAIAGALNAELVSDQARAQALASEVAGRLDI
IAEETERGWQGDLATDGGLRLERMVRGVKEVVVLDMALIGSSDARHIDQL
TARLKEIYQTPPSLHRREGDIEISGPRALLDAIFASGRKGLTMQRYKGLG
EMNAEQLWETTLDPNVRSLLQVKVADATDADGLFARLMGDEVEPRREFIQ
DNALSVANLDI
>RHE_CH00057 helO, helicase protein
MTISASLPDLPASHVLPAVGAALAEQKRAVLSAPPGAGKTTLVPLYLLDQ
AWRGDGRIILLEPRRLAARAAASRMASLLGEQVGETVGYRMRLDNRISTA
TRIEVVTEGVFARMILDDPELAGVSAVIFDEFHERSLDADFGLALALDVQ
SALREDLRILVMSATLDVDRVASLLDHPPVIESLGRSFPIDIRYQDRPGG
ERIEDAVTRAIIEAHADEDGSILAFLPGQAEITRTAERLQGRFGPETLIA
PLYGNLSQQEQDAAIRPAPKGTRKIVLATSIAETSITIDGVRIVIDSGLQ
RLPVFEASTGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAA
LPAFTPPQILSSDLSGLVLDLAHWGVQNPASLAFVDQPPETTLKEARALL
GQLGALDKDGGLTGRGKMMRDLALPPRLAAMVVSSGESGHAREAAMIAVL
LTEQGLGGPSVDIEDRLRRFKTERGERADASRRLAGRLAAGLDTVTTAAP
VLAGQLLLHAFPDRIALQRGGRGRFVMANGRGAELPETERLAGSQMLVIA
DLTGRAAQGRILAAAEVTRADIEAELPGEIGTYDQTFFDRQSRQVRARRA
TRLGAIVFEETPLPRPSGAAVTQALMEGVRELGFDQLAFSKEVLQLRERI
GFLHRTIGDPWPDVSDDALLSRLEEWFAPFQEDARSLSEISAAGLSNGLM
SLVPHELQRDLSRLAPTHFEAPTGQRHPIQYEGEEPILTIRVQELFGLKQ
HPAVAGGRLPLLLELTSPAHRPIQTTRDLPGFWAGSWKDVRAEMRGRYPR
HPWPERPEEALPTTRAKPRGT
>RHE_CH01533 himA, integration host factor alpha-subunit protein
MTGKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLS
SFATFQVRDKNERIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVT
RKVKLKPQNPTP
>RHE_CH02159 holB, DNA polymerase III delta prime subunit protein
MSEERPGLLDGAIWPAENTRLFGHEEAEAFLAQSYRSGKGHHAILIEGPE
GIGKATLAFRFASHVLSHPDPNTAPEAIGDPDPDSAVSRQIVSGASHNLL
HLARPVDEKTGKVKSAITVDEVRRAGKFFSQTSGTGNWRIVIIDPADDMN
RNAANAILKILEEPPKRALFLVLSHAPGRLLPTIRSRCLPLKLSPLSDEA
LVAALGHLGISGEGGAVLAAAKGSVGEALKLLNYGGGEIIAAYDEVLTTE
GPAARKAMHRLADALSGKESDTIFDFFVSHVGDDIMNRARAAAGDGEIAT
AERLARLYSEITERLAVSSAYNLDRKQTVISILADIKQPGR
>RHE_CH01590 hrm, bacterial nucleoid DNA-binding protein
MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSF
TVSHRAATKGRNPSTGAEVDIPARNVPKFTPGKGLKDAVNG
>RHE_CH04080 ialA, nucleoside polyphosphate hydrolase protein
MSQATVKAEDLPYRPCVGVMILNRDGLVWAGRRIPDGNSEYDGSPQLWQM
PQGGIDKGENPLDAAYRELYEETGIRTVTLLAEASNWINYDLPPSLIGIG
LKGKFRGQTQRWFAFRFEGDESEIAINPPPGGHDPEFDAWEWKPMQELPG
LIVPFKRAVYDQVIAEFRHLAALQSED
>RHE_CH00399 ihfB, integration host factor beta-subunit protein
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGA
FSVKNRPSRSGRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGQADEED
>RHE_CH02835 ligA, DNA ligase (NAD+) protein
MSTEGSAVETLTIEEAAAELERLAREIAHHDALYHGKDQPEISDADYDAL
KRRNDALEARFPELIREDSPSRRVGAAPSVTFSPVVHARPMLSLDNTFSQ
EDVQDFVASVYRFLGRMPDQSIAFTAEPKIDGLSMSIRYENGRLTTAATR
GDGTTGENVTANIRTIAEIPNQLPKGVPAVVEIRGEVYMAKSDFLALNRQ
MEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGEMSDMPADT
QFAMVQTFKDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTEVEKIEIQVGRTGALT
PVARLKPITVGGVVVTNATLHNEDYIKGIGNSGERIRPEEHDIREGDTVI
VQRAGDVIPQILDVVMEKRLAEVKPYEFPKICPVCGSHAVREVNEKTGKM
DSVRRCTGGFICRAQATEHLKHFVSRNAFDIEGLGSKQIDFFFENEDPSL
QIRTAPEIFTLEKRQQDSLTKLENIDGFGKVSVGKLYAAINERRSIALHR
FIYALGIRHVGETTAKLLARSYGTYEAFATAMKEAAPLSGDAWNDLNAIE
GIGEVVARAMVEFYKEPRNVEVIGRLLDEVTPAEAEQPVTAGSPVAGKTV
VFTGSLEKFTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKAR
ELGVQTMDEDEWLALISG
>RHE_CH02095 mfd, transcription-repair coupling factor (TRCF) protein
MIPGFDAKKLAAVAEPLTIGNVPTGLEPLLLAELARAGEPVAYVMSDGHR
MADLEQMLGFVAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIA
HRKKPHAAIVLVTANAMLQKVAPHDVIESLSFSARPGNQLRMDDLAGRLE
RNGFDRVATVREVGEYAVRGGILDVFVPGSEEPVRLDFFGDTLESIRSFD
PASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFGATTRDDALYL
AVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRVVTDHTVREAAEERSKL
VLDYYDARLNSGQPAKGQMAQGTPYKPVTPGQLYLDSKHFTKTLDALGAI
RISPFNEHEGEARRVINVDARQGQRWARSNAEGGGDAERVNIFDIVVKHI
ADRRAAGAKVLVTAWTEGSLERLLQVLNEHGLEKVKPVEALKDIRSLEKG
EAAAAVLNLESGFEAGELVVIGEQDILGDRMVRRSKRRKRAADFISEVAG
LDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYADEAKLFLPVENI
DLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPVLTTPDGLYDEFAARFPYDETEDQDNAIEAVRSDLGAGRPMDRLVC
GDVGFGKTEVALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLP
VRVQQASRLVGAKDLALTKKEVADGKTDIVVGTHALLGAGIKFANLGLLI
IDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSLIT
TPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPRLADLADVHA
FLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAE
RRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQ
MLEEAVAEVKGVDEIHDTGWSPQISVGTTVMIPENYVPDLHLRMALYRRL
GEITDLKEIDGFGAEMIDRFGPMPIEVQHLLKIVYIKSLCRTANVEKLDA
GPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLFLTRDLPTPEK
RLQGAAVIMTQLAEMAK
>RHE_CH04022 mgpS, ATP-dependent DNA helicase protein
MILSGRGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRV
VEKVGLQNVALVTGEEKISPPDARFSVCTVEAMPRETKAAFVAIDEVQLA
GDLERGHIFTDRILHLRGRDETLLLGAATMRPILQQILPGITIVERPRLS
HLLYAGQKKITRLPQRSAIVAFSADEVYAIAELIRRQRGGAAVVLGALSP
RTRNAQVALYQAGDVEYMVATDAIGMGLNLDVDHVAFAQDRKFDGYQFRN
LNPAELGQIAGRAGRHVRDGTFGVTGQVSPFDEELVQRIEGHEFDNVKVL
QWRTTAMDFSSIQSLRASLEAGPRVPGLTRALPAVDQQALEQLSRYPEVI
DLADRPARVEKLWEACALPDYRRITPAQHADLISTLFSDLVRYGTVNEQF
LAEQVHRSDRTDGEIDTLSARIAQIRTWTYVSNRPGWLADPTHWQEKTRE
IEDRLSDALHERLTKRFVDRRTSVLMKRLRENAMLEAEISVNGDVFVEGH
HVGQLSGFRFTPVAGTDGPDAKAVQAASQKALALEFEARAARLHAAGNSD
LAIGSDGLIRWLGDPVARLSGSDHIMRPRVILLADEQLTGNARDHVAARI
ERFVNHHVSTVLKPLDDLSRAEDLQGLAKGLAFQLVENLGVLFRRDVTEE
VKSLDQEARASMRRYGVRFGAYHIFVPALLKPAPAELITLLWALKNDGLD
KQGYGDLIPVLAAGRTSVVTDPSFERMFYKLAGFRFLGKRAVRIDILERL
ADIIRPLLQWKPGQNNRPEGAYDGRRFTTTTAMLSILGATLEDMEEILKG
LGYRADAVKAEEASTHLAAQDAASAPAASAETSGEEAAEKADHDDADGAT
EEAASEPSAEPASTAADVPATEANDSNVAAEVTDAAASAEAVVSGEAGEP
AEPKPVLLWRLGGRNDNHRQARGGHGERRGGQNQERGERNRRPNGGEGGE
GNRGGDGRDNRHGRGKDGGSREGGRPQQARGERKDQPRGDRQDRGDRKDR
GERNDRNDRNDRNNNRGAQPLRFEAKPPRKEKPIDPDSPFAKLAALKEQM
KK
>RHE_CH00848 mutL, DNA mismatch repair protein
MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGG
KALLRVSDNGSGMDAADLELAIRRHCTSKISETLEDIRTLGFRGEALPSI
GSVARLSIASRKRDSAGGHEIAVAGGKVLHLRPAGANPGTIVEVRDLFFA
TPARLKFLKTEKAEAGAITEIVKRMAIAFPAVRFVLSGSDRATLEFPATG
DDHLARMAQVLGKDFSDNAIALDAVREEISLTGFAGVPTFNRGNSAHQYA
FVNGRPVQDKLILSAIRGAYAETIPSGRYPVAVLSIALDPALVDVNVHPA
KSDVRFRDPGLVRGLIVGAIREALARDGSRAATTGASDMLRAFRPGFQPY
GQRPQAPWSAETSPSRPYQPAPAFSERPQASFDGLSTPTARAEPQFSPDP
VSPGLASPRPVAPETVGRYPLGAARAQIHANYIVAQTEDGLVIVDQHAAH
ERLVFEAMRKALHSKRLASQVLLIPEIVDIPEEDCDRLMLHAAEFAELGL
AIERFGPGAIAVRETPAMLGEVDAHGLIRQLADEIAEWDTASGLSAKLEY
VAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNHGRPTYIELKL
SDIERLFGRS
>RHE_CH00388 mutS, DNA mismatch repair protein
MNARIDIGNEAFSAAELATAESRASATPMMEQYIEIKANNPGSLLFYRMG
DFYELFFEDALEASRALGITLTKRGQHMGQDIPMCGVPVHAADDYLQKLI
SLGFRVAVCEQIEDPAQAKKRGAKSVVKRDVIRLVTPGTITEEKLLSPSE
SNYLMALARIRGGAEPQLALAWIDISTGVFRLAETESSRLLADILRIDPR
ELILPDTIFHDAELKPVFDVLGRTAVPQPSVLFDSASAEGRIARYFGVST
LDGFGSFSRAELAAAAAAVAYVEKTQIAERPPLGKPERESAASTLFIDPA
TRANLELARTLSGDRNGSLLKAIDRTVTGGGARLLAERLMSPLTDPARIN
ARLDSIGFLIEEPSLCGKLRDTLKHVPDMPRALSRLALDRGGPRDLWAIR
QGLQAAGGLADLLASAMLPEELDQALSGLQALPAGLETLLAETLADELPL
LKRDGGFLRDGASAELDEVRALRDQSRRVIAGLQLQYAEETGIRSLKIKH
NNILGYFIEVTAGNAAPMTETSEAKSRFIHRQTMASAMRFTTTELADLES
RIANAADRALTIELEAFDRMTAAVVAQAESIKSGARALAVIDVAAGLALL
AEEQAYCRPQVDGSKMFAIEGGRHPVVEQALRRQAGGPFVANNCDLSPKT
GDKDGAIWLLTGPNMGGKSTFLRQNALIAIMAQMGSFVPATSAHIGIVDR
LFSRVGASDDLARGRSTFMVEMVETAAILNQASDRSLVILDEIGRGTATF
DGLSIAWAAVEHLHEANRCRGLFATHFHELTVLSEKLGRLSNATMRVKEW
DGDVIFLHEVGPGAADRSYGIQVARLAGLPASVVARARDVLTRLEDADRK
NPASQLIDDLPLFQVAVRREDAARGPSKVEEALRAMSLDDMTPREAMDAL
YDLKKKLK
>RHE_CH03766 mutT, NTP pyrophosphohydrolase protein
MSEAGRKILLVAACALIDADGRILLAQRPEGKSLAGLWEFPGGKVEPGET
PEETLVRELEEELGVKTKIACLAPLTFASHSYDTFHLLMPLYICRRYEGT
AQGREGQALKWVRAQALRDYPMPPADEPLIPMLQDLL
>RHE_CH00997 mutY, A/G-specific adenine glycosylase protein
MTITTLDTPSAKPLLDWYDRHHRDLPWRISPGMAARGVKPDPYRVWLSEV
MLQQTTVQAVKPYFEKFLERWPEVTDLAAAESDAVMATWAGLGYYARARN
LKKCAEAVAKEHGGVFPDTEEGLKSLPGIGDYTAAAVAAIAFNRQAAVMD
GNVERVISRLYAIEAPLPAAKPAMKAKVALLTPSGRPGDFAQAMMDLGAT
ICTPKRPACSLCPFRNACQALKLSDPELFPVKAAKKEKPVRHGAAFIAVS
GDGEILLRRRAESGLLGGMTEVPTTAWTARLDGETSSAAAPFEAAWQACG
TVIHVFTHFELRLSIWRVAIAAKPKSRDGVNDEWWEPVTNLEAQALPTIM
KKAIAAAIPLAFKTGKA
>RHE_CH03671 nth, endonuclease III protein
MALLSIITAEYRVSMANPKLKSPPRGTNVITRRKPAATVKTAYSPAEREE
IFRRFSVQRPEPRGELEHTNPFTLLVAVALSAQATDAGVNKATRALFKVA
DTPQKMLDLGEDKLRDYIKTIGLYRNKAKNVIALSQMLVDEFAGKVPERR
EELVRLPGVGRKTANVVLSMAFGQATMAVDTHIFRIANRIRLAPGETPDE
VEARLMKVVPKHYLYHAHHWLILHGRYTCKARRPECERCVIADICKSPEK
SSDVPAPLVELPPQVIGEAVE
>RHE_CH01499 parC, DNA topoisomerase IV subunit A protein
MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLK
PVHRRIVYAMNEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARL
AQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSELLLEGIDQDA
VDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCD
AALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFR
VRAKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLEDI
RDESAEDIRIVLVPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRI
PKVMALNEVLKEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNID
EVIRIIREEDEPKPVMMARWDLTDNQVEAILNMRLRALRKLEEFEIRKEF
DELTKEKSEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFAE
APEADEEAIQQAMIEKEPITVVISEKGWIRALKGHISETATLTFKEGDGL
KVAFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQA
VLTAFVHDPTRKQLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQ
LLVPVSGDHVAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKDGGISDVR
CFAISDGLFWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSGKFA
G
>RHE_CH02188 parE, DNA topoisomerase IV subunit B protein
MTAVPSTPTRPAPVASNADDYGASSIRVLEGLEPVRMRPGMYIGGTDEKA
LHHLFAEVIDNAMDEAVAGHANFIEVHLDLQGYLTVTDNGRGIPVENHPQ
VPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGVGVSVVNALSDFLEVEV
ARNRKLYRQRFSRGLPQGGLEELGDVHNRRGTRVRFHPDPQIFGDHMKFE
AARVFRMARSKAYLFGGVEIRWSCEPGVLPEGSEVPDKATFHFPGGLKDY
LQATMGKEFTVTREIFAGKTEKASGHGSMEWAITWYGGDPQVHSYCNTIP
TPEGGTHEAGLRIALTKGLKAYAELTQNKRAAQITTDDVMISAVGMLSVF
IREPEFVGQTKDKLATVEAQRIVENALRDPFDHYLADNPNEAAKLLDWVI
ERAEERLRRRKEKEVNRKTAVRKLRLPGKLADCSQNTAEGAELFIVEGDS
AGGSAKQARNRANQAILPLRGKILNVASAGREKFGANQQLADLIQALGCG
TRSKYRQEDLRYERIIVMTDADVDGAHIASLLITFFYQEMPELVRGGHLF
LAVPPLYKITQGAKSAYARDDNHRAELMQTEFKGKAKVEISRFKGLGEMM
PAQLKETTMDPAKRTLLRVLIDEVDFEGTRSAVDDLMGTKPEARFRFIQE
RAAFAENLDI
>RHE_CH00151 polA, DNA-directed DNA polymerase, DNA polimerase I protein
MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLR
DARNTDVGVTPTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGL
IREATRAFNLPCIETEGFEADDIIATYARQAEAAGADVTIVSSDKDLMQL
VTPNVHMYDSMKDKQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIP
GIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANVEMAKLSRDLV
RLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDAS
VIEPAVVPIEWGAAAHGPDLDAAEPEPVAGGIPDVSGESVPVPSRAKAKP
GVEGAFSPADLAKARAEAFATLPFDHSTYETIRDLATLDRWIAAARDTGL
IAFDTETTSLDAMQAELVGFAMAIADNVADPTGTKIRAAYVPLAHKDGVG
DLLGGGLAENQIPMRDALPRLKALLEDESVLKVAQNLKYDYLLMKRYGVE
TKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGKANIT
FDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPV
LARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQL
GDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTK
LKSTYTDALPGYVHPETRRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAE
GRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHA
MTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIERSEAG
DYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSV
RAFNERAAINAPIQGSAADVIRRAMIKMEPALAEAGLAERVRMLLQVHDE
LIFEVEDEDVEKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDEAH
>RHE_CH03875 priA, primosomal protein N` (replication factor Y)
MSIDSSDLFGALFEAPPANRTVPVLVPMPAPKPYSYSVPEGMAVEPGSVV
QVPLGPRQVIGVVWDGGEDGVDPKKLRPISHVFDCPPLSKEMRDFIDWVA
SYTLSPPGLVARMALRAPNAFEPEPMVEGLKFVGGEPERMTPARARVLET
ASDGLSWTRSGLAHAAGVSTSVVDGLITLGIFESMFLPPPPVVAMPDPDF
AAARLEGPQKEAAAEIVSGVRRGEFSVSLIDGVTGSGKTEVYFEAIAETL
KRGKQVLILLPEIALTASFLERFQDRFGAKPAEWHSDLAPRMREKVWRQA
VTGEVRVVAGARSALFLPFEDLGLIIVDEEHDPAYKQEDRVFYNARDMAV
VRGRIGDFPVILVSATPSVESQVNGQIGRYSTVHLPTRFGDAALPDLHLI
DMRRHAPERGGFLSPVLIRAISKTVERREQALLFLNRRGYAPLTLCRVCG
HRFQCPQCSSWLVEHRFRKQLQCHQCGHAERTPEACPECGTLDHLVACGP
GVERIAEEVERHFPEARTIVLSSDMMGGVKRLRLELDAIAKGEADIVIGT
QLVAKGHNFPLMTLVGIVDADLGLANGDPRAAERTFQLLSQVTGRAGRTG
LKSHGLLQTYQPQHPVMQAIVSGDSDAFYEREITERERAALPPFGRLASI
IVSAETRHDAENHARGMRNAAPQVSGISVLGPAEAPLALVRGRHRFRLLV
HGRRNSDMQGFLRAMLSQSPKERGSVQVQLDIDPQSFV
>RHE_CH01848 radC, DNA repair protein
MAKGPVATSSDDELPFETEEPVADERSFFGGRPQKPAARNLRPALTASLA
APEHYHGHRERLRDRFRELGDTALADYEILELLLFRLIPRRDTKPIAKAL
IERFGSLAGVFGAPAALLTEVKGVGENVALDLKLIATVAHRTLKSEIRSK
QVLSSWSSVIQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHT
PVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKVIIEAAKAL
DITVHDHIIIGKDGHVSLKGLKLI
>RHE_CH02323 recA, recombinase A protein
MSQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEIET
VSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALQTIAESQKKGGI
CAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAVD
VLVVDSVAALTPRAEIEGEMGDSLPGMQARLMSQALRKLTASISKSNCMV
IFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKEREEVVG
NQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGA
WFSYNSQRLGQGRENAKTFLRDNPDLAREIELALRQNAGLIADRFLQNGG
PDADDGDAAAEM
>RHE_CH02771 recD, exodeoxyribonuclease V alpha subunit protein
MQFAPQQDEALKAVSKWLNEGRSPLFRLFGYAGTGKTTLARHFAENVDGD
VLFAAFTGKAAQVLRSRGASNAKTIHSLIYRPRGEEAVEDEETGKTSIAP
MFSINRQSPVAKAALIIVDECSMVDEALGKDLMSFGTPILVLGDPGQLPP
VSGGGYFTNQEPDYLLTDIHRQARDNPIIKLAMQVREGNEVMYGDYGTAK
VIPKSEVTQQLVLGADQVLVGTNRTRRRYNQRLRELKGFSADYPQTGDKL
VCLRNDPAKGLLNGSLWQVMTSSKETTKPGINLLVRPEDDDMDRGAAKIK
LLKQAFEDVDGEIPWNTRKRYDEFDYGYALTVHKAQGSQWNDVVLFDESW
AFRDTRERWLYTAITRAAETLTIVR
>RHE_CH00141 recF, DNA replication and repair protein
MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLL
SPGRGLRRAAYGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTA
RRLRINGTPAKTADELTDHLRLLWLIPAMDGLFTGASSDRRRFLDRLVLS
LDPAHGRRASDFERAMRSRNKLLDDGRFDPSWLAGIEEQMASLGIAMALA
RQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPSVDLEDDYRVM
LAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV
LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGT
DRGMFTALGDRAQFFTVADGRVFG
>RHE_CH02093 recG, ATP-dependent DNA helicase protein
MRPAILDPLFSPISGLPGVGPKIAELLVKLFGRETVEDCRVIDLLFHAPF
SLIDRRNQPGIGLAPQGAIVTITARVDRHLVPPRGKSNVPYRVFLHDETG
ELTLVFFRGQAAWLEKQLPVDAEVTVSGKVDWFNGRASMVHPDYIVKAEE
VESLPLVEPIYPLTAGLSPKTLRKIIDAALPRFPEMPEWIDLTLTQKQGL
PSIRDSFHMLHEPRDPSDVDPQAPARRRLAYDEFLAGQLSLSLVRQRLHK
VAGQPVHATGAVSSKIVKALPFSLTSSQNDAIAEILKDMAGAERMLRLLQ
GDVGSGKTLVALMAMAAVIESGGQAVLMAPTEILARQHHATISKFAASAG
LGIEVLTGRTKGREREEILERIASGAAQIIIGTHALFQDSVTYDKLMLAV
VDEQHRFGVHQRLRLTAKGISPHMLVMTATPIPRTLVLAAFGDMDVSKLT
EKPVGRKPIQTITVPMERTGEIVGRLQSALAEGKKAYWICPLVEESEELD
LMSAEERHATLVAALGSDIGLIHGRMSGPEKDAAMVAFKNGETRLLVATT
VVEVGVDVPDATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGP
LGETGHARLSIMRETEDGFRIAEEDLKLRGEGELLGTRQSGTPGFRIASL
EAHADLLEIARKDAAYLIERDPELTSERGQAIRTLLYLFRRDEAIRFLRA
G
>RHE_CH01879 recJ, single-stranded-DNA-specific exonuclease protein
MADLVDPVPRAFLGVEKSALDNRWVARLDQAGQNRALAMAQVHGLPDLIA
RVLAGRGVRVDEAIEFLDPTIRSLMPDPHTLTDCEKAATRLVRAIERGES
VAIFGDYDVDGAASSALMFRFLSHFGVKANIYIPDRIFEGYGPNPAAINQ
LIDNGARLIVTVDCGSTSHEALAAAAARNIDVVVIDHHQVTHELPPCHAL
VNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRIMALDLLQWLD
IVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVT
PYHFGFLIGPRINAGGRIGDAALGSRLLTLDDAGEAEVIAQRLDELNRER
QAMEAMMLQEAEAEALAEYGDGEGASIIVTAHEKWHPGIVGLIAARLKEK
FKRPAFAIAFDPSGRGTGSGRSINGFDMGRMVRAAVEEGILVKGGGHAMA
AGLTVERADLGRLRTFFTEKAARTVASLVANETLKIDGAIGASGATLELI
DRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTLEAMDGSRLDG
IAFRAADTGLGNLLINSRGASLHVAGSLGAEHYQGARRIQLRVCDAAPAK
>RHE_CH02837 recN, DNA repair protein
MLIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG
DGGLVRHGEDRGQVTAVFAVGMDHGARLLLRENGIDDEGDLIFRRQQSAD
GRTKAYVNDQPISVQLMRQAGQMLVEIHGQHDDRALVDTNAHRNLLDAFA
GLTDEVAEVSRLHRLWRDSERTLKKHREKVESAAREADYLRSSVSELEKL
SPQDGEEEELAESRQRMMKAERIAGDIAEASEFLNGNASPVPHIASLVRR
LERKSHEAPGLLEETVALLDAALDQLSNAQMEVEAALRKTEYDPRELERV
EERLFALRAASRKYSVPVTELPALAVRMIADLSDLDAGEERLARLEAEVG
LARENYDSAARWLSDKRHQAGTALAAAVMAELPALKLERARFMVEITTDA
QEALPEGIDVVEFHVQTNPGTRPASIMKVASGGELSRFLLALKVALADRG
SAPTLVFDEIDTGVGGAVADAIGQRLKRLSERVQVLSVTHAPQVAARAAT
HLLISKGPAAEGSEKIATRVATMAQKDRTEEIARMLAGASVTEEARAAAK
RLLAGNG
>RHE_CH01394 recO, DNA repair protein
MQWQDQAIILGVKRHGETSVIAEVMTRGRGRHLGLVRSGRSRAMRPVLQP
GNAVEVVWRARLDEHLGEFRVEPVTLRAARLMDTATAVYGVQAMGALLRL
LPERDPHPHLFDALEVILDHLHNPADAGELFVRFELAVLNDLGFGLDLAE
CAATGARSDLAYVSPKSGRAVSRSAGAPWADKMLLLPPFLGVEGNHAADV
DSLAAAFRLTGFFLHRHVYEPRGIEAVAARDGFVQAALKALNPASQTLSS
PNGVSA
>RHE_CH02953 recQ, ATP-dependent DNA helicase protein
MPLSERNAPGFSASDALFSAGRSPLDVLKQVYGYSSFRGKQQKVVEHIVS
GGDALVLFPTGAGKSLCFQIPALCRDGVGIVVSPLIALMRDQVEAMKQLG
IRAAALNSSLSREEFVQVRRALSAGKLDLLYVTPERILTDAFRELIASEK
IALFAIDEAHCVSQWGHDFRPEYRELGRLGEQYPGVPRVALTATADPHTR
DDIIERLGLGNAEIFTTSFDRPNIAYEIVERDQPRQQLLRFLSGHKGNSG
IVYCLSRAKVEDTADWLNGQGIRALPYHAGMDRALRDSNQDAFLKEENLC
LVATVAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMA
YGMADVIQRRRMIDEGNAADEIKRVERAKLNALLAICETASCRRQAILAH
FGEAHAGQCGNCDTCLKPVETWEGTEAAIKALAAVYRTGERFGAGHVIDV
LVGNINEKTERFGHVNMPVFGAGKDIPARTWQSVYRQLLAMGLIRIDHEA
YGALKLEPEARAVFKSERQVFFRKDRPASEPRTKKAERSERKSALSGADG
SLFEALRAERMAIAKSLGVPPYVVFPDTTLIAFATERPRSRKELLGISGV
GQAKLDRYGDAFLEIILSHDKD
>RHE_CH00123 recR, DNA recombination protein
MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKKDQLLGPLSNAM
GEAYDKVKICSRCGNVDTVDPCTVCTDTQRDQSVIIVVEDVSDLWALERA
GAMNAAYHVLGGTLSPLDGIGPDDLNIRGLIDRVGEGGIRELIIAVNATV
EGQTTAHYITDQLQGLDVKITRLAHGVPVGGELDYLDEGTLAAALRARTV
I
>RHE_CH02265 rhlE1, ATP dependent RNA helicase protein
MRHAIPPTRSELGRTGTETVFPLTTFADLGLSQKVLSAVTDAGYTIPTPI
QAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRARARMPRTLI
LEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVLI
CTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFT
RQTLFFSATMPPEIQKLADRFLQNPERIEVARPASAAKTVTQRFVASHSK
DYEKRAVLRELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFNVGALHG
DMDQRSRTMMLQNFRDGNLQLLVASDVAARGLDIPDVSHVFNFDVPIHSE
DYVHRIGRTGRAGRSGAAFTLVTKRDTKFVDAIEKLIGEKVEWLNGDLNS
LPPAEESADSDRPRRNSRERGAKGERGERDRGRGRGNRSAAGHKSDNDIQ
DSDVQVIAAAPAKAEVVKNERKAEQKPQNNARNNRPYPANDDSRDRRRHR
DHDDGPTPVGFGDDIPAFMLIAGSAKV
>RHE_CH03152 rhlE2, ATP-dependent RNA helicase protein
MKPDRMVRSGASRCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQ
EQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTL
ILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQLQLEKGTDIL
VATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPK
KRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGG
KNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDA
YVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLMGIDITVASGEPPAH
ISAGGPRRGNGNGNNRNRGGGQGRGEGRGDQNRSEHRGSRPERRPRPERP
GRNEDFRGQRRGEAAADFGPDNDLASTSDFRPAKPQRPAHNGPNGHHANG
EPSGHHRGNGRHAHGRPARKHGEDRGPHQAQGGEQRRDGNGGNRRGGSGS
RNGGQRRERA
>RHE_CH00963 rnhA, ribonuclease H protein
MKHVDIFTDGACSGNPGPGGWGAVLRYGEVEKELCGGEAETTNNRMELMA
AISALQALKSPCEVDLYTDSAYVKDGISKWIFGWKKNGWKTSDKKPVKNA
ELWQALEEARNRHKVTLHWVKGHAGHPENERADELARRGMEPFKKGKAVS
F
>RHE_CH00868 rnhB, ribonuclease HII protein
MKRRTPPDSPLLFDTVPLVPDFKLELKARKAGHWPVAGADEAGRGPLAGP
VVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTR
IDETDIRKASLDAMRRAICSLAIPASYVLTDGLDVPPGLDCPGQAVVKGD
ARSVSIAAASIVAKVTRDRMMARAHNVFPDYGFAAHAGYGTAQHRAGIEK
HGPCSLHRMSFRPLRKGEDGPEMDELIPE
>RHE_CH03481 ruvA, holliday junction DNA helicase protein
MIGKLKGTIDEIGEDYVLVDVQGVCYVAYCSARTLSKLGSAGEACVLFIE
TYVREDQLKLFGFMTALEREWFNLLQSVQGVGAKVALAVLSTLTPGELAN
AIALQDRAAVSRAPGVGPKVAMRLVTELKNRAPAYAGEAINIALKRELGE
GVAAAPVADAVSALTNLGYSRDQAANAVAAAMKTAGEGADSAKLIRLGLK
ELAR
>RHE_CH03482 ruvB, holliday junction DNA helicase protein
MSEPARLISPEKRGEDLDITLRPQSLDEFTGQAEARANLKVFIEAAKNRG
EALDHVLFVGPPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLT
NLEERDVLFIDEIHRLNPAVEEILYPAMEDYQLDLIIGEGPAARSVKIDL
SKFTLVAATTRLGLLTTPLRDRFGIPVRLTFYTVEELELIVRRGARLMNL
PMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREIADEALT
RLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIE
PYMIQQGFIQRTPRGRVLTAIAWKHLGMQPPKEMEAAQFRLFQEDD
>RHE_CH03478 ruvC, crossover junction endoribonuclease protein
MQNTIRIIGIDPGLRRTGWGIIDTLGNSLKFVASGTVTSDGEMDLASRLC
QLHDGLADIVHAHKPDEAAVEQTFVNKDAVATLKLGQARGIAMLVPARAG
LPVSEYAPNAVKKAVIGVGHGEKQQIHMMLKILMPKAEFKGDDAADALAI
AICHAHNRGGHRMRQALAG
>RHE_CH02108 ssb, single-strand DNA binding protein
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERRE
KTEWHNVVVFNEGLCKVVEQYVKKGAKLYVEGQLQTRKWQDQQGQDRYST
EVVLQGFNSTLTMLDGRGDGGGASSGFGGGRGSSGGGNDYGDDYGAPSSS
SSSNRGGGGNFSRDLDDDIPF
>RHE_CH00815 tag, DNA-3-methyladenine glycosylase I protein
MSDTGIIIGADGRSRCHWHANLPDYLKYHDEEWGRPVTNDTRLFEKICLE
GFQSGLSWLTILRKRENFRAAFAGFDFEKVALFGEADVDRCLADAGIIRH
RGKIVSTINNARRAIALRDEFGSLAHYFWRYEPGHNERPDVVDRDHVVAN
PTTPTSVVISKDLKKRGWTFVGPTTVYAFMQAMGLVNDHLEGCFCRPEVE
AMRAVLVRP
>RHE_CH01638 topA, DNA topoisomerase I protein
MNVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVLPDQDFEM
LWEVDGASAKRMKDIAEAVKSSDGLFLATDPDREGEAISWHVLDMLNKKR
VLNGKSVKRVVFNAITKKAVLDAMADPRDIDVPLVDAYLARRALDYLVGF
NLSPVLWRKLPGARSAGRVQSVALRLVCDRESEIERFISEEYWNISALLK
TPRGDEFEARLVSAHGKRLPPRAIGNGEDAGRLKALLEGASYIVDTVEAK
PIKRNPGPPFTTSTLQQAASSNLGFSASRTMQIAQKLYEGVDIGGETVGL
ITYMRTDGVQMAPEAIDAARRAILDQFGERYLPEKARFYSTKAKNAQEAH
EAIRPTDFNRSPDRVRKFLDADQIRLYELIWKRGIASQMASAEIERTTAE
ITAENKGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDEDGRLPEI
NARETLAKQKINSTQHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLAT
LRDRDYVTIDKRKLIPQAKGRLVTAFLESFFTKYVEYDFTADLEEKLDRI
SAGELNWKQVLRDFWKDFFAQIEDTKELRVTNVLDSLNEALAPLVFPKRE
DGGDPRICQVCGTGNLSLKLGRYGAFVGCSNYPECNYTRQLSSENGGEAE
GVALNEPKSLGTDPTTGEELTLRSGRFGPYIQRGDGKEAKRASLPKGWKP
EDIDYEKAMALISLPRDIGRHPETGKMISSGIGRYGPFLLHDGSYANLET
VEDVFSVGLNRAVTLIAEKASKAPGRGARGTPAALKTLGDHPDGGAITVR
DGKYGPYVNWGKVNATLPKGKDPQAITIEEALALITEKAGKAPAGKTARG
KAKPKAAAAEAKTTKTAAKPKAAKAKAPAKLKKS
>RHE_CH00726 traAch, conjugal transfer protein A
MAIMFVRAQVISRGAGRSIISAAAYRHRTRMMDEQVGASFNYRGGASDLV
HEELALPDCVPDWLHEELALPDCVPDWLHEAIDGLSVASASEALWNAVEA
FETLGNAQLARELIIALPEELTRAENITLVREFVRDNLTARGMVVDWVYH
DKDGNPHAHVMTTLRPLAEEGFGRKRVTIMGEDGKPLRVVTPDSPNGRIV
NRVWAGDRETMKAWKIAWAETANRHLALAGHEIRLDGRSYAEQNLGGIAQ
RHLGSVKAALAGKGKELYFTPADLARRQEIADRLLAEPELLLKQLGNERS
TFDEKDIAKALHRTVDDSTDFANIRARLMASDQLVMLKPQEVDAETGKVS
EPTVFTTRDMLRIEYDMAQSAQVLLKRDGFGVSPRHVASAIERVESADPK
TPFRLDAEQVDAVRHVTGDSGIAAVVGLAGAGKSTLLAAAGLAWEGEGRR
VMGAALAGKAAEGLEDSSGIKSRTLASWELAWANGRDTLHRGDVLVIDEA
GMVSSQQMARVLKIAEEAAVKVVLVGDAMQLQPIQAGAAFRAITERIGFA
ELAGVRRQREAWARDASRLFARGEIEKGLDVYARHDHLVEAETRGEIVDR
IVVDWAEARKQAIGRSVSEGRDGRLRGDELLVLAHTNDDVRALNDVLREV
MAGDNALSDGRTFQTARGAREFAAGDRIIFLENARFLEPRARQPGPQYVK
NGMLGTVVSTGDKRGDPLLSVFLDNGDKVVFSENSYRNVDHGYAVTIHKS
QGATVDRTFVLATGMMDEHLTYVSMTRHRDRVDLYAASQDFEPKPDWGRK
PSVDHAAGVTGELVETGEAKFRPDDEDADDSPYADVKTDDGTVHRLWGVS
LPKALEEAGILEGDTVILRKDGVERVKASVPVVDEETGHKRYEEREVDRN
VWTAQQVETAEARRERIERESHRPELFKQLVERLSRSGAKTTTLDFESGA
GYRAYADDFARRRGIDQLSLAAVEMEESLSRRFAWIAVKKEQAEKLWDRA
SVALGFAIERERRVVYSDGRTESHVVSGASAGEARYLIPPTTSFVTSVEE
DARLLQLSSPTWAEREAILRPLLEKIYRNPHAALVALNALASEASAEPRK
LAEDLAAEPERLGRLRGSDLIIDGRAARNERSAAISALEDLRPLARAHAT
EFRRNVERFHEREERRRGHMALSVPALSRHAIARLMEIEAVRSQGGDDAY
KTAFALAAEDRSVVQEIRAVSDALTARFGWSAFTAKADAVAERNIAGLMP
EDLIPGQGETLIKLFEAVKRFGDEQHLAERQDRSKIVAAASAVPGKEPGK
EDVPMLAAVTEFKTPVDEEARLRALSNPLYRQQSAALANAATTIWRDPAG
AIDKFEELLQKGFVADRIAAAMTNDPAAYGTLRGSDRLMDRMLASGRERK
EAMRAVPEGATRLRALGATYANLLDAERKVITAERQRMAVAIPGLSKAAE
EALVQRMAHARGNGRKPNISATPLDANIRQEFADVSRALDERFGRDAVIR
GDKDFINRVPLAQRPAFAAMQEKLKVVQQSVRQENSEQIMAERRKRAVNR
DIKLGGF
>RHE_CH03242 ung, uracil-DNA glycosylase protein
MQQLKSFLVAQKRVGKRIFPKGSEYFRALDLTPIANVKAVILGQDPYHGL
GQAHGLCFSVRPGVRIPPSLVNIYKEMETDLGIAPARHGFLEHWARQGVL
LLNSVLTVEEGQAAAHQGKGWERFTDAIIGKVNDECESVVFMLWGSYAQR
KAAFVDTARHLVLKAPHPSPLSAHNGFFGCKHFSKANAFLQSRGRPPIDW
QLPADPHGG
>RHE_CH02107 uvrA, excinuclease ABC subunit A protein
MSELKTISIRGAREHNLKSIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYA
EGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRST
VGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFGEGTR
LYILAPLVRGRKGEYKKELAELMKKGFQRVKVDGQFYEIAEAPVLDKKYK
HDIDVVVDRIVVRPDVSARLADSLETCLKLADGLAIAEFADKPLPPEETS
AGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPT
CDGLGAQQKIDPDLIVPEPERTLRDGAIAPWAKSTSPYYNQTLEALGKHY
GFKLGTRWNDLSDEAKDVILNGTDDKIEFHYADGARSYTTHKNFEGIITN
LERRWKETDSAWAREDIERFMSAAPCPACNGYRLKPEALAVKINKLHIGE
VTQMSIRIARDWFEALPAIFNAKQNEIAVRILKEIRDRLRFLNDVGLEYL
SLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLL
DTLKHLRDIGNTVIVVEHDEDAILTADDVVDIGPAAGIHGGQVIAHGTPQ
DIMDNPKSLTGKYLSGELGVPVPDQRRKPKKGREIKVVGARGNNLKNVTA
SIPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPADHDRIDGF
EHIDKVIDIDQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKARGYQPG
RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKQKSIADVLDMTVEEGVDFFAAVPAVRDKLQSLKDVGLGYIKVGQQANT
LSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEMLHELV
NQGNSVVVIEHNLEVIKTADWVLDFGPEGGDGGGEIVATGTPEAIVKEKR
SYTGQFLKELLERRPAKRAAAAE
>RHE_CH02563 uvrB, excinuclease ABC subunit B protein
MKQLEAEAEASGVESQREIASKAGKHRKRVENEARKHSEAVSVNKKATVS
KTARGVSIGGSSDPKTRAAAGLNPVAGLDISLEDAGSISPGGVTATVEAL
SKLIESGNPLHKNGKIWTPHRPARPDKSEGGITIRMDSEYKPAGDQPTAI
RDLVEGLQSGERSQVLLGVTGSGKTFTMAKVIEETQRPAVILAPNKTLAA
QLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDR
MRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMNVGDRLDQRQ
LLADLVAQQYKRRDIDFTRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEI
DAITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNGAIKAIKEELRLRL
AELEKAGRLLEAQRLEQRTRYDIEMLEATGSCQGIENYSRYLTGRDPGDP
PPTLFEYIPDNAIVFIDESHVTVPQIGGMYRGDFRRKATLAEYGFRLPSC
MDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDP
PVEVRSARTQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGV
RVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAIL
DADKEGFLRSETSLIQTIGRAARNVDGKVILYADQVTGSMQRAMDETARR
REKQMAYNLENGITPESVKAKISDILDSVYERDHVRADISGVSGKGFADG
GNLVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRLKAVELAAMD
DPMAREEAKSMEAKGRGSSPSPQRGEGARRADEGATPSYFSKPSLDDMGP
GTDTTTPLFRKPHLDEMGRDPTTPAGKSLFRKNDLDEMTVGRTEKPVIGR
VPEKPDAAKGSKRFSPLLEGQPERDDVRPVVRGRVGPGSYEEPGEQKRKG
RTKGKTGRPGR
>RHE_CH01479 uvrC, excinuclease ABC subunit C protein
MNGRKLPDGGVLYDDTDESEDEIEVEGDVSAAPLAVAVDWNAGSLNETGL
VGAELIGEFVKRLPNSPGVYRMLNAEGDVLYVGKARSLKKRVGNYAVGRV
HSNRIAQMVRQTANMEFVTTRTETEALLLEANLIKRLRPRFNVLLRDDKS
FPYILITGDHRAPAIFKHRGARARKGDYFGPFASAGAVGRTINSLQRAFL
IRTCTDSVFETRTRPCLLYQIKRCSGPCTHEVSDEGYAELVQEAKDFLSG
KSQKVKSHMAEAMNQAAEDLDFERAAIYRDRLAALSHVQSHQGINPAGVD
EADVFAIHHEGGVSCIQVFFFRTGQNWGNRAYFPKADPQLSSAEVLNAFL
AQFYDDKPVPKQIMLSETAEELELLAAALSEKAGHKVSILVPRRGEKRDL
VDHVVGNAREAHGRKLAETASQSRLLEGFKETFGLAYAPQRIEIYDNSHI
MGTNAVGGMVVAGPEGFVKNQYRKFNIKSTDITPGDDFGMMKEVMTRRFS
RLIKEEGIPDRTAQAAAADAADMPFPAWPDVILIDGGQGQMTAVRAILAE
LGITDSVTAIGIAKGVDRDAGRERFFAPGRESFTLPPRDPVLYFIQRMRD
EAHRFAIGSHRVRRKKEMVKNPLDEIGGIGPSRKRALLQHFGTAKAVSRA
ALSDLMAVEGISEAVAKQVYNHFHEDAAK
>RHE_CH00573 uvrD1, ATP-dependent DNA helicase protein
MYLEKLNPQQRMAVEHGTLTDGSHIAGPLLVIAGAGSGKTNTLAHRVAHL
IVKGADPRRILLMTFSRRAAAEMARRVERICRDVLGSKTGVMADALTWSG
TFHGIGARLLREYAQQIGLDADFTIHDREDSADLINLIRHDLGFSKTESR
FPAKGTCLAIYSRAVNSETALDQVLRDAFPWCAAWEKQLRELFACYVEAK
QAQNVLDYDDLLLYWAQMVGESVIAEDIGSRFDHVLVDEYQDTNRLQASI
LMALKPQGQGLTVVGDDAQSIYSFRAATVRNILDFPAAFSPPADIVTLDR
NYRSTQPILTAANAVIDLASERFTKNLWTERQSSERPRLVTVRDETDQAR
YVAEKVLDHREEGLKLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLK
FLDSAHVKDMLAALRFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMSE
DASPLSALAAMPAPPRSGEDWTAFVSMLQEMKSGKAGWPAEIELARQWYA
PHLERLHEDAATRQADLLQLEQIAGGYASRERFLTELTLDPPDATSDQAG
VPLLDEDYLILSTIHSAKGQEWTRVFMLNVVDGCIPSDLAVGATAEIEEE
RRLLYVAMTRARDGLDLVVPQRFFTYGQNAQGDRHVYASRSRFIPATLLQ
FFEACSWPQVKSDAAAQAQARQVRIDVGARMRGMWR
>RHE_CH02819 uvrD2, DNA helicase II protein
MARKPQPPVAAAGRPGAGGGIAARAMAARDGGKRPDYLAGLNPEQTEAVE
TLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAARE
MKERIALLVGGAVEGMPWLGTFHSIGVKLLRRHAELVGLSSDFTILDTDD
VVRLIKQLIQAEGLDDKRWPAKQFAGMIDTWKNKGLGPADIPEGDARAFA
NGRGRDLYFAYQARLSTLNACDFGDLLMHPIAIFRKNPDLLKEYHGRFRY
ILVDEYQDTNTAQYMWLRLLAQRSKGEPQNVCCVGDDDQSIYGWRGAEVD
NILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR
TDPDDVKVQVHASWDSEEEARAIGEEIEQLQRGKHLLNDMAILVRASFQM
REFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLIAQPADDLAFERI
INTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD
VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLK
ELIRSMESFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTV
FLPGWEEGLFPHQRSLDESGRAGLEEERRLAYVGITRAKRRCHIWFVSNR
RIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEP
FANSYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDG
ELVAKSTSSQPSRFTLGDRVFHMKFGNGNITGIEGNKLTIDFDRAGQKRV
LDGFVERV
>RHE_CH03879 xerC, tyrosine site-specific integrase/recombinase protein
MNELLVIADPRLMAERAAWLENLARERRLSEHTLDAYERDTRQFLTFLTG
HLAGPATLGDIRELRPADLRAFLAARRRQGSGARSLGRNLAGLRSLLRHL
EKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITIVSDEAQLHDEPWIAA
RDAAVMTLLYGCGLRISEALNLVPADLPKGATTLRITGKGNKTRLVPLLP
VVFDAVEKYRALCPYDLESGEPLFRGARGGKLQAAIIQRAMQKLRGALGL
PETATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRL
LEVYDRAHPRA
>RHE_CH03827 xerD, tyrosine site-specific integrase/recombinase protein
MKELPDADPVPFPVLLRDPRRDGLRSDVGARDLRRAAAARRDDPYSLRTG
QPAGDGHDRHDREVSEMMDLSRVHVESFLEMMSAERGAAANTLQSYERDL
DDVRSFLNGRSIRLTEAASADLAAYLASLARQGFKPSSQARRLAAMRQFY
KFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQTEADDPA
PGQLQRRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKE
RLVPLSHSAIAALKSYGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQV
FARDLKNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSD
ISTTQIYTHVLEERLQQLVQMHHPLAKQAKKHE
>RHE_CH00276 xseA, exodeoxyribonuclease VII large subunit protein
MSNLFDSDSPTNLAEYSVSELSGSIKRTIETAFDQVRVRGEISGYRGPHS
SGHAYFALKDDRARIDAVIWKGTFSRLKFRPEEGMEVIATGKVTTFPGSS
KYQIVIETLEPAGAGALMALIEERKRRLGAEGLFDAARKKRLPFMPHVIG
VVTSPTGAVIRDILHRISDRFPVHVLVWPVKVQGEGSGEEVANAIRGFNA
LEPASAISRPDVLIVARGGGSLEDLWSFNDEIVVRAAAESRIPLISAVGH
ETDWTLIDYAADVRAPTPTGAAEMAVPVKAELEAQAAALAARLQGCMNRQ
MDQRRQSVRSLMRAFPSLDQLLALPRRRFDEAAAGLGRGLELNTINKRRG
FERVIAHLRPDLLSGRISERRQMLNERMVRAERMVERLIDRSASRVERAE
AILASLPARLKAQTDRSRERLGNLTRHADTAIRHQLTRARAELSAQDRVL
QSLSYKNVLRRGYAVIRDEDNRPVSQAAALSAGMGIAIEFADGRIGAMTT
EGGTPPGGAKKRSTKPAEPTKQGSLF
>RHE_CH01731 xthA1, exodeoxyribonuclease III protein
MKIATYNVNGINGRLTNVLRWLKEDGPDVACLQELKTDDARFPRKELERA
GYGAVWHGQRSWNGVAILAKGKTPILTRRGLPGDPDDTHSRYIEAAVDGM
LIGCLYLPNGNPFPGAKFEYKLRWFRRLSAYAAELLEIEVPSILAGDFNV
MPTEIDVYKPERWQDDALFRPEVRTAYAQLVAQGWTDAVRHLHPGERIYT
FWKYWRNSFERDAGLRIDHLLLSPTVAPWLRSASVRRKPRGWEQTSDHAP
VMIELEAGGG
>RHE_CH01815 xthA2, exodeoxyribonuclease III protein
MKIATWNINGVKARIDNLTQWLKDSDPDIVCLQEIKTIDEGFPRLEIEAL
GYHVETHGQKGFNGVAILSKTSPFEVNRGLPGDPLDEQARFLEAVFTLPD
TRILRVCCIYLPNGNPVDTEKYPYKLAWMERLRSFAAERLAYEEMLVLAG
DYNVIPEPHDCFDPRAWESDALFLPQTRRAFRRLENLGLTDAVRATTDAT
RLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEKPS
DHVPVIAYFDFAA
>RHE_CH03970 xthA3, exodeoxyribonuclease III protein
MGFSITTWNINSVRLRMPIVEQFVLKHRPDILCLQETKVPNELFPAAPLR
AMGYDHIIIHGQKGYHGVAIASRIPLMEDHRQDYCGVGDARHISAVFERG
NRRVRLHNFYVPAGGDEPDRTINPKFGHKLDFIEEMKLLKANGEANTSAI
LVGDLNIAPLEHDVWSHKQLLKIVSHTPVETDGLLEVMKRGAWLDLMRQH
VPASEKLYTWWSYRAKDWQAADRGRRLDHIWSSSDLGPHLQRIEILKEAR
GWDRPSDHVPVTAHFDF