Gene list
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COG category: Replication, recombination and repair
Organism: Rhizobium etli CFN 42, CFN 42
Number of genes found: 164
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| Rhizobium etli CFN 42, CFN 42 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | RHE_CH00287 | probable methylated-DNA-[protein]-cysteine S-methyltransferase protein | SubName: Full=Probable methylated-DNA-[protein]-cysteine S-methyltransferase protein; EC=2.1.1.63; | chromosome | CDS | 296158 | 564 | + | 0.650709 |
| NA | RHE_CH00778 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 816315 | 1593 | - | 0.612053 |
| NA | RHE_CH00320 | putative endonuclease protein | RecName: Full=UPF0102 protein RHE_CH00320; | chromosome | CDS | 326564 | 315 | + | 0.666667 |
| NA | RHE_CH01639 | probable DNA processing chain A protein | SubName: Full=Probable DNA processing chain A protein; | chromosome | CDS | 1726075 | 1143 | - | 0.685039 |
| NA | RHE_CH00836 | putative methylase protein | SubName: Full=Putative methylase protein; | chromosome | CDS | 877390 | 561 | + | 0.627451 |
| NA | RHE_CH00732 | probable exodeoxyribonuclease III protein | SubName: Full=Probable exodeoxyribonuclease III protein; | chromosome | CDS | 770109 | 273 | + | 0.615385 |
| NA | RHE_CH00782 | probable insertion sequence transposase protein, IS1111A/IS1328/IS1533 family | SubName: Full=Probable insertion sequence transposase protein, IS1111A/IS1328/IS1533 family; | chromosome | CDS | 820447 | 1017 | + | 0.606686 |
| NA | RHE_CH02721 | putative NTP pyrophosphohydrolase protein, MuT/nudix family | SubName: Full=Putative NTP pyrophosphohydrolase protein, MuT/nudix family; | chromosome | CDS | 2833584 | 756 | - | 0.646825 |
| NA | RHE_CH00779 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 817981 | 345 | - | 0.611594 |
| NA | RHE_CH02833 | probable DNA polymerase III, epsilon subunit protein | SubName: Full=Probable DNA polymerase III, epsilon subunit protein; EC=2.7.7.7; | chromosome | CDS | 2955650 | 591 | - | 0.632826 |
| NA | RHE_CH02440 | putative succinoglycan biosynthesis protein | SubName: Full=Putative succinoglycan biosynthesis protein; | chromosome | CDS | 2550447 | 558 | - | 0.641577 |
| NA | RHE_CH03062 | putative hydrolase protein, MutT/nudix family | SubName: Full=Putative hydrolase protein, MutT/nudix family; | chromosome | CDS | 3203311 | 552 | - | 0.625 |
| NA | RHE_CH00806 | probable NTP pyrophosphohydrolase protein, MuT/nudix family | SubName: Full=Probable NTP pyrophosphohydrolase protein, MuT/nudix family; | chromosome | CDS | 844500 | 510 | - | 0.590196 |
| NA | RHE_CH00688 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 707018 | 414 | + | 0.589372 |
| NA | RHE_CH04084 | putative nucleotidyltransferase protein | SubName: Full=Putative nucleotidyltransferase protein; | chromosome | CDS | 4328419 | 1614 | - | 0.6171 |
| NA | RHE_CH02434 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 2543836 | 606 | + | 0.620462 |
| NA | RHE_CH00916 | probable exodeoxyribonuclease VII small subunit protein | RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; | chromosome | CDS | 966190 | 252 | - | 0.630952 |
| NA | RHE_PF00108 | probable DNA (cytosine-5-)-methyltransferase protein | SubName: Full=Probable DNA (Cytosine-5-)-methyltransferase protein; EC=2.1.1.37; | p42f | CDS | 117472 | 1515 | + | 0.607261 |
| NA | RHE_PF00063 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | p42f | CDS | 62889 | 372 | - | 0.567204 |
| NA | RHE_CH02122 | putative hydrolase protein, MutT/nudix family | SubName: Full=Putative hydrolase protein, MutT/nudix family; | chromosome | CDS | 2221650 | 534 | - | 0.56367 |
| NA | RHE_CH00519 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2; SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 538138 | 360 | + | 0.588889 |
| NA | RHE_CH00237 | probable insertion sequence transposase protein, ISRm14 | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Probable insertion sequence transposase protein, ISRm14; SubName: Full=Putative insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein, IS66 family; | chromosome | CDS | 252882 | 363 | + | 0.600551 |
| NA | RHE_CH00128 | putative NTP pyrophosphohydrolase protein, MutT/nudix family (responsible for removing an oxidativelydamaged form of guanine from DNA and the nucleoti | SubName: Full=Putative NTP pyrophosphohydrolase protein, MutT/nudix family (Responsible for removing an oxidativelydamaged form of guanine from DNA and the nucleotide pool); | chromosome | CDS | 138852 | 960 | + | 0.620833 |
| NA | RHE_CH01405 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 1477357 | 903 | - | 0.620155 |
| NA | RHE_CH04118 | putative DNA polymerase III, delta subunit protein | SubName: Full=Putative DNA polymerase III, delta subunit protein; EC=2.7.7.7; | chromosome | CDS | 4371850 | 1041 | + | 0.581172 |
| NA | RHE_CH02722 | putative endonuclease/exonuclease/phosphatase family protein | SubName: Full=Putative endonuclease/exonuclease/phosphatase family protein; | chromosome | CDS | 2834354 | 1110 | - | 0.608108 |
| NA | RHE_PF00107 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | p42f | CDS | 115582 | 1737 | - | 0.625216 |
| NA | RHE_CH01096 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 1145120 | 1038 | + | 0.663777 |
| NA | RHE_CH01540 | probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element | SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element; SubName: Full=Probable insertion sequence transposase protein, ISRm2011-2; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 1617201 | 480 | + | 0.6 |
| NA | RHE_CH00777 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 814251 | 1593 | + | 0.611425 |
| NA | RHE_CH00773 | probable insertion sequence transposase protein, IS66 family | SubName: Full=Probable insertion sequence transposase protein, IS66 family; | chromosome | CDS | 812222 | 681 | - | 0.609398 |
| NA | RHE_CH00026 | probable nuclease/helicase protein, ATP dependent | SubName: Full=Probable nuclease/helicase protein, ATP dependent; | chromosome | CDS | 22372 | 3552 | - | 0.640484 |
| NA | RHE_CH02011 | putative insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 2105294 | 345 | + | 0.611594 |
| NA | RHE_CH01708 | putative ATPase associated with chromosome architecture/replication protein | SubName: Full=Putative ATPase associated with chromosome architecture/replication protein; | chromosome | CDS | 1789614 | 1317 | + | 0.635535 |
| NA | RHE_CH02156 | putative deoxyribonuclease protein, TatD family | SubName: Full=Putative deoxyribonuclease protein, TatD family; | chromosome | CDS | 2261359 | 687 | - | 0.609898 |
| NA | RHE_CH01967 | putative site-specific recombinase, phage integrase family protein | SubName: Full=Putative site-specific recombinase, phage integrase family protein; | chromosome | CDS | 2050210 | 690 | + | 0.586957 |
| NA | RHE_CH03669 | probable 6-O-methylguanine-DNA methyltransferase protein | SubName: Full=Probable 6-O-methylguanine-DNA methyltransferase protein; EC=2.1.1.63; | chromosome | CDS | 3885767 | 873 | - | 0.631157 |
| NA | RHE_CH03050 | probable NTP pyrophosphohydrolase protein, MutT/nudix family | SubName: Full=Probable NTP pyrophosphohydrolase protein, MutT/nudix family; | chromosome | CDS | 3190355 | 651 | - | 0.620584 |
| NA | RHE_PF00110 | probable DNA mismatch endonuclease protein | SubName: Full=Probable DNA mismatch endonuclease protein; | p42f | CDS | 119596 | 444 | + | 0.585586 |
| NA | RHE_CH02919 | probable integrase/recombinase protein | SubName: Full=Probable integrase/recombinase protein; | chromosome | CDS | 3051864 | 1215 | - | 0.546502 |
| NA | RHE_CH01457 | putative DNA polymerase III, chi subunit protein | SubName: Full=Putative DNA polymerase III, chi subunit protein; EC=2.7.7.7; | chromosome | CDS | 1529344 | 450 | + | 0.615556 |
| NA | RHE_CH00241 | putative recombinase protein, phage integrase family | SubName: Full=Putative recombinase protein, phage integrase family; | chromosome | CDS | 256048 | 1584 | - | 0.566919 |
| NA | RHE_PF00426 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | p42f | CDS | 479437 | 549 | + | 0.626594 |
| NA | RHE_CH02010 | putative insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 2104914 | 384 | + | 0.598958 |
| NA | RHE_CH02014 | putative insertion sequence transposase protein | SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 2107859 | 1566 | - | 0.595147 |
| NA | RHE_CH01580 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1661428 | 588 | + | 0.573129 |
| NA | RHE_CH02655 | putative insertion sequence transposase protein | SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 2767515 | 276 | - | 0.619565 |
| NA | RHE_CH02015 | putative insertion sequence transposase protein | SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 2109497 | 294 | - | 0.629252 |
| NA | RHE_CH00556 | probable DNA glycosylase protein | SubName: Full=Probable DNA glycosylase protein; | chromosome | CDS | 575673 | 684 | - | 0.631579 |
| NA | RHE_CH00215 | probable insertion sequence transposase protein, ISRm2011-2 | SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element; SubName: Full=Probable insertion sequence transposase protein, ISRm2011-2; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 227915 | 480 | + | 0.6 |
| NA | RHE_CH02967 | putative uracil DNA glycosylase protein | SubName: Full=Putative uracil DNA glycosylase protein; EC=2.7.7.7; | chromosome | CDS | 3105474 | 1455 | - | 0.624055 |
| NA | RHE_CH00235 | probable recombinase, resolvase family | SubName: Full=Probable recombinase, resolvase family; | chromosome | CDS | 251222 | 570 | - | 0.566667 |
| NA | RHE_CH02363 | probable ribonuclease H protein | SubName: Full=Probable ribonuclease H protein; | chromosome | CDS | 2470715 | 498 | - | 0.588353 |
| NA | RHE_CH01010 | putative NTP pyrophosphohydrolase protein, MutT/nudix family | SubName: Full=Putative NTP pyrophosphohydrolase protein, MutT/nudix family; | chromosome | CDS | 1060481 | 453 | - | 0.584989 |
| NA | RHE_CH00780 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 818322 | 384 | - | 0.598958 |
| NA | RHE_CH00617 | putative DNA ligase protein | SubName: Full=Putative DNA ligase protein; | chromosome | CDS | 635560 | 1980 | - | 0.613636 |
| NA | RHE_CH01332 | probable insertion sequence transposase protein, IS10 | SubName: Full=Probable insertion sequence transposase protein, IS10; | chromosome | CDS | 1389655 | 1209 | - | 0.449959 |
| NA | RHE_CH01057 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 1109274 | 210 | - | 0.533333 |
| NA | RHE_CH00238 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 253241 | 348 | + | 0.623563 |
| NA | RHE_CH00774 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; | chromosome | CDS | 812948 | 348 | - | 0.603448 |
| NA | RHE_PF00086 | putative NTP pyrophosphohydrolase protein | SubName: Full=Putative NTP pyrophosphohydrolase protein; | p42f | CDS | 87161 | 474 | + | 0.637131 |
| NA | RHE_CH03355 | probable 3-methyladenine DNA glycosylase protein | RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; | chromosome | CDS | 3522708 | 618 | + | 0.635922 |
| NA | RHE_CH03906 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 4137544 | 1221 | + | 0.669943 |
| NA | RHE_CH00395 | putative hydrolase protein, MutT/nudix family | SubName: Full=Putative hydrolase protein, MutT/nudix family; | chromosome | CDS | 411588 | 639 | - | 0.636933 |
| NA | RHE_CH00776 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 813833 | 345 | + | 0.611594 |
| NA | RHE_CH01539 | probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2; SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 1616732 | 360 | + | 0.588889 |
| NA | RHE_CH02016 | putative insertion sequence transposase protein, IS66 family | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Probable insertion sequence transposase protein, ISRm14; SubName: Full=Putative insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein, IS66 family; | chromosome | CDS | 2109841 | 363 | - | 0.600551 |
| NA | RHE_CH03057 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 3200475 | 345 | - | 0.611594 |
| NA | RHE_CH00027 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 25916 | 3195 | - | 0.653834 |
| NA | RHE_CH01485 | putative ADP-ribose pyrophosphatase protein | SubName: Full=Putative ADP-ribose pyrophosphatase protein; EC=3.6.1.13; | chromosome | CDS | 1557086 | 591 | + | 0.593909 |
| NA | RHE_CH00214 | probable insertion sequence transposase protein, ISRM11/ISRM2011-2 | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2; SubName: Full=Probable insertion sequence transposase protein, ISRM11/ISRM2011-2 element; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 227446 | 360 | + | 0.588889 |
| NA | RHE_CH01183 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 1235837 | 456 | + | 0.614035 |
| NA | RHE_CH00520 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; | chromosome | CDS | 538607 | 480 | + | 0.602083 |
| NA | RHE_CH01302 | probable DNA polymerase bacteriophage-type (uracil-DNA glycosylase) protein | SubName: Full=Probable DNA polymerase bacteriophage-type (Uracil-DNA glycosylase) protein; EC=2.7.7.7; | chromosome | CDS | 1354978 | 894 | - | 0.653244 |
| NA | RHE_CH03056 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 3198809 | 1593 | - | 0.611425 |
| NA | RHE_CH01739 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1823189 | 315 | + | 0.555556 |
| NA | RHE_PF00151 | putative nucleotidyltransferase protein | SubName: Full=Putative nucleotidyltransferase protein; | p42f | CDS | 159378 | 1392 | + | 0.661638 |
| NA | RHE_CH02009 | putative integrase protein | SubName: Full=Putative integrase protein; | chromosome | CDS | 2103363 | 1386 | + | 0.554113 |
| NA | RHE_CH01490 | putative DNA replication initiation ATPase protein | SubName: Full=Putative DNA replication initiation ATPase protein; | chromosome | CDS | 1562089 | 714 | + | 0.621849 |
| NA | RHE_CH02012 | putative insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 2105712 | 1593 | + | 0.611425 |
| NA | RHE_CH00239 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Probable insertion sequence transposase protein, IS66 family; SubName: Full=Putative insertion sequence transposase protein, IS66 family; | chromosome | CDS | 253661 | 1566 | + | 0.595785 |
| NA | RHE_CH02439 | probable uracil-DNA glycosylase protein | SubName: Full=Probable uracil-DNA glycosylase protein; | chromosome | CDS | 2549810 | 633 | - | 0.64297 |
| NA | RHE_CH01164 | probable DNA ligase (ATP) protein | SubName: Full=Probable DNA ligase (ATP) protein; EC=6.5.1.1; | chromosome | CDS | 1218412 | 1626 | + | 0.640221 |
| NA | RHE_CH00869 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 910058 | 1158 | - | 0.643351 |
| NA | RHE_CH02542 | putative NTP pyrophosphohydrolase protein, MutT/nudix family | SubName: Full=Putative NTP pyrophosphohydrolase protein, MutT/nudix family; | chromosome | CDS | 2652178 | 417 | + | 0.59952 |
| NA | RHE_CH01852 | probable holliday junction resolvase protein | RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; | chromosome | CDS | 1939744 | 495 | - | 0.614141 |
| NA | RHE_CH03058 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 3200816 | 384 | - | 0.598958 |
| NA | RHE_CH01977 | probable DNA-methyltransferase protein (hemagglutinin-associated protein) | SubName: Full=Probable DNA-methyltransferase protein (Hemagglutinin-associated protein); | chromosome | CDS | 2062742 | 606 | + | 0.622112 |
| NA | RHE_CH00948 | putative NTP pyrophosphohydrolase protein, MuT/nudix family | SubName: Full=Putative NTP pyrophosphohydrolase protein, MuT/nudix family; | chromosome | CDS | 996622 | 543 | + | 0.58011 |
| NA | RHE_CH03151 | putative DNA alkylation repair protein | SubName: Full=Putative DNA alkylation repair protein; | chromosome | CDS | 3304895 | 1017 | + | 0.628319 |
| NA | RHE_CH01993 | probable resolvase protein | SubName: Full=Probable resolvase protein; | chromosome | CDS | 2080280 | 558 | + | 0.582437 |
| NA | RHE_PF00327 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | p42f | CDS | 368111 | 357 | - | 0.593838 |
| NA | RHE_CH00775 | probable insertion sequence transposase protein | SubName: Full=Probable insertion sequence transposase protein; SubName: Full=Putative insertion sequence transposase protein; | chromosome | CDS | 813453 | 384 | + | 0.598958 |
| NA | RHE_CH02252 | putative endonuclease protein | SubName: Full=Putative endonuclease protein; | chromosome | CDS | 2352233 | 342 | - | 0.488304 |
| ada | RHE_CH00423 | methylated-DNA-[protein]-cysteine S-methyltransferase protein | SubName: Full=Methylated-DNA-[protein]-cysteine S-methyltransferase protein; EC=2.1.1.63; | chromosome | CDS | 438230 | 1074 | + | 0.647114 |
| alkA | RHE_CH03785 | DNA-3-methyladenine glycosidase II protein | SubName: Full=DNA-3-methyladenine glycosidase II protein; EC=3.2.2.21; | chromosome | CDS | 4011844 | 693 | - | 0.65368 |
| alkB | RHE_CH00039 | alkylated DNA repair protein | SubName: Full=Alkylated DNA repair protein; | chromosome | CDS | 42086 | 612 | + | 0.629085 |
| ccrM | RHE_CH00995 | site-specific DNA-methyltransferase (adenine-specific) protein | SubName: Full=Site-specific DNA-methyltransferase (Adenine-specific) protein; EC=2.1.1.72; | chromosome | CDS | 1042499 | 1143 | + | 0.622922 |
| deaD | RHE_CH02179 | ATP-dependent RNA helicase protein | SubName: Full=ATP-dependent RNA helicase protein; | chromosome | CDS | 2282640 | 1956 | - | 0.654397 |
| dinB | RHE_PF00149 | DNA-directed DNA polymerase protein | RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; | p42f | CDS | 157052 | 1092 | - | 0.605311 |
| dinP | RHE_CH01629 | DNA damage inducible P protein | RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; | chromosome | CDS | 1713032 | 1293 | - | 0.632637 |
| dnaA | RHE_CH00358 | chromosomal replication initiator protein | RecName: Full=Chromosomal replication initiator protein DnaA; | chromosome | CDS | 370494 | 1551 | + | 0.629271 |
| dnaB | RHE_CH01436 | DNA helicase protein | SubName: Full=DNA helicase protein; | chromosome | CDS | 1506873 | 1497 | - | 0.610554 |
| dnaEch1 | RHE_CH01627 | DNA polymerase III alpha subunit protein | SubName: Full=DNA polymerase III alpha subunit protein; EC=2.7.7.7; | chromosome | CDS | 1707959 | 3498 | + | 0.609205 |
| dnaEch2 | RHE_CH04083 | DNA polymerase III alpha subunit protein | RecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; | chromosome | CDS | 4324967 | 3453 | - | 0.587605 |
| dnaEf | RHE_PF00152 | DNA polymerase III alpha subunit protein | RecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; | p42f | CDS | 160769 | 3264 | + | 0.627757 |
| dnaG | RHE_CH02954 | DNA primase protein | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome | CDS | 3084575 | 1998 | - | 0.638138 |
| dnaN | RHE_CH00318 | DNA polymerase III, beta chain protein | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome | CDS | 324227 | 1119 | - | 0.616622 |
| dnaQ | RHE_CH00005 | DNA polymerase III, epsilon chain protein | SubName: Full=DNA polymerase III, epsilon chain protein; EC=2.7.7.7; | chromosome | CDS | 3379 | 723 | + | 0.593361 |
| dnaX | RHE_CH00126 | DNA polymerase III, tau subunit protein | SubName: Full=DNA polymerase III, tau subunit protein; EC=2.7.7.7; | chromosome | CDS | 136339 | 1875 | - | 0.6528 |
| fpg | RHE_CH00355 | formamidopyrimidine-DNA glycosylase protein | RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; | chromosome | CDS | 367500 | 891 | + | 0.654321 |
| gyrA | RHE_CH02110 | DNA gyrase subunit A protein | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome | CDS | 2210445 | 2727 | + | 0.636597 |
| gyrB | RHE_CH00012 | DNA gyrase subunit B protein | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome | CDS | 8271 | 2436 | + | 0.618637 |
| helO | RHE_CH00057 | helicase protein | SubName: Full=Helicase protein; | chromosome | CDS | 58549 | 2466 | - | 0.66545 |
| himA | RHE_CH01533 | integration host factor alpha-subunit protein | RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; | chromosome | CDS | 1612109 | 339 | + | 0.589971 |
| holB | RHE_CH02159 | DNA polymerase III delta prime subunit protein | SubName: Full=DNA polymerase III delta prime subunit protein; EC=2.7.7.7; | chromosome | CDS | 2264729 | 1026 | - | 0.634503 |
| hrm | RHE_CH01590 | bacterial nucleoid DNA-binding protein | SubName: Full=Bacterial nucleoid DNA-binding protein; | chromosome | CDS | 1674294 | 276 | + | 0.605072 |
| ialA | RHE_CH04080 | nucleoside polyphosphate hydrolase protein | RecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; | chromosome | CDS | 4323441 | 534 | + | 0.623595 |
| ihfB | RHE_CH00399 | integration host factor beta-subunit protein | RecName: Full=Integration host factor subunit beta; Short=IHF-beta; | chromosome | CDS | 413725 | 300 | - | 0.606667 |
| ligA | RHE_CH02835 | DNA ligase (NAD+) protein | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome | CDS | 2957093 | 2157 | - | 0.629115 |
| mfd | RHE_CH02095 | transcription-repair coupling factor (TRCF) protein | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 2191936 | 3504 | + | 0.63984 |
| mgpS | RHE_CH04022 | ATP-dependent DNA helicase protein | SubName: Full=ATP-dependent DNA helicase protein; | chromosome | CDS | 4256943 | 3159 | + | 0.641026 |
| mutL | RHE_CH00848 | DNA mismatch repair protein | RecName: Full=DNA mismatch repair protein MutL; | chromosome | CDS | 887874 | 1833 | - | 0.666121 |
| mutS | RHE_CH00388 | DNA mismatch repair protein | RecName: Full=DNA mismatch repair protein MutS; | chromosome | CDS | 400314 | 2727 | - | 0.657132 |
| mutT | RHE_CH03766 | NTP pyrophosphohydrolase protein | SubName: Full=NTP pyrophosphohydrolase protein; | chromosome | CDS | 3992274 | 414 | - | 0.620773 |
| mutY | RHE_CH00997 | A/G-specific adenine glycosylase protein | SubName: Full=A/G-specific adenine glycosylase protein; | chromosome | CDS | 1044727 | 1104 | - | 0.641304 |
| nth | RHE_CH03671 | endonuclease III protein | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome | CDS | 3887197 | 816 | + | 0.612745 |
| parC | RHE_CH01499 | DNA topoisomerase IV subunit A protein | RecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; | chromosome | CDS | 1575738 | 2256 | + | 0.612589 |
| parE | RHE_CH02188 | DNA topoisomerase IV subunit B protein | RecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; | chromosome | CDS | 2294075 | 1983 | + | 0.640948 |
| polA | RHE_CH00151 | DNA-directed DNA polymerase, DNA polimerase I protein | SubName: Full=DNA-directed DNA polymerase, DNA poyimerase I protein; EC=2.7.7.7; | chromosome | CDS | 164051 | 3000 | + | 0.624 |
| priA | RHE_CH03875 | primosomal protein N` (replication factor Y) | SubName: Full=Primosomal protein N` (Replication factor Y); | chromosome | CDS | 4105979 | 2217 | - | 0.651331 |
| radC | RHE_CH01848 | DNA repair protein | RecName: Full=UPF0758 protein RHE_CH01848; | chromosome | CDS | 1936609 | 825 | - | 0.631515 |
| recA | RHE_CH02323 | recombinase A protein | RecName: Full=Protein RecA; AltName: Full=Recombinase A; | chromosome | CDS | 2422674 | 1089 | - | 0.605142 |
| recD | RHE_CH02771 | exodeoxyribonuclease V alpha subunit protein | SubName: Full=Exodeoxyribonuclease V alpha subunit protein; EC=3.1.11.5; | chromosome | CDS | 2887136 | 1128 | - | 0.620567 |
| recF | RHE_CH00141 | DNA replication and repair protein | RecName: Full=DNA replication and repair protein RecF; | chromosome | CDS | 149341 | 1125 | - | 0.650667 |
| recG | RHE_CH02093 | ATP-dependent DNA helicase protein | SubName: Full=ATP-dependent DNA helicase protein; | chromosome | CDS | 2189436 | 2106 | - | 0.64245 |
| recJ | RHE_CH01879 | single-stranded-DNA-specific exonuclease protein | SubName: Full=Single-stranded-DNA-specific exonuclease protein; | chromosome | CDS | 1964131 | 1803 | + | 0.660566 |
| recN | RHE_CH02837 | DNA repair protein | RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; | chromosome | CDS | 2959868 | 1674 | - | 0.655914 |
| recO | RHE_CH01394 | DNA repair protein | RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; | chromosome | CDS | 1467316 | 771 | + | 0.66537 |
| recQ | RHE_CH02953 | ATP-dependent DNA helicase protein | SubName: Full=ATP-dependent DNA helicase protein; | chromosome | CDS | 3082707 | 1869 | - | 0.632424 |
| recR | RHE_CH00123 | DNA recombination protein | RecName: Full=Recombination protein RecR; | chromosome | CDS | 134442 | 606 | - | 0.643564 |
| rhlE1 | RHE_CH02265 | ATP dependent RNA helicase protein | SubName: Full=ATP dependent RNA helicase protein; | chromosome | CDS | 2367966 | 1584 | + | 0.618056 |
| rhlE2 | RHE_CH03152 | ATP-dependent RNA helicase protein | SubName: Full=ATP-dependent RNA helicase protein; | chromosome | CDS | 3306142 | 1683 | + | 0.663102 |
| rnhA | RHE_CH00963 | ribonuclease H protein | RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; | chromosome | CDS | 1011173 | 456 | + | 0.618421 |
| rnhB | RHE_CH00868 | ribonuclease HII protein | RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; | chromosome | CDS | 909201 | 690 | - | 0.665217 |
| ruvA | RHE_CH03481 | holliday junction DNA helicase protein | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; | chromosome | CDS | 3665517 | 615 | + | 0.650406 |
| ruvB | RHE_CH03482 | holliday junction DNA helicase protein | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; | chromosome | CDS | 3666214 | 1041 | + | 0.643612 |
| ruvC | RHE_CH03478 | crossover junction endoribonuclease protein | RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; | chromosome | CDS | 3664279 | 510 | + | 0.617647 |
| ssb | RHE_CH02108 | single-strand DNA binding protein | RecName: Full=Single-stranded DNA-binding protein; | chromosome | CDS | 2208863 | 516 | + | 0.625969 |
| tag | RHE_CH00815 | DNA-3-methyladenine glycosylase I protein | SubName: Full=DNA-3-methyladenine glycosylase I protein; EC=3.2.2.20; | chromosome | CDS | 853917 | 630 | + | 0.614286 |
| topA | RHE_CH01638 | DNA topoisomerase I protein | RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; | chromosome | CDS | 1723177 | 2655 | - | 0.626742 |
| traAch | RHE_CH00726 | conjugal transfer protein A | SubName: Full=Conjugal transfer protein A; EC=3.1.11.5; | chromosome | CDS | 761414 | 4674 | + | 0.627514 |
| ung | RHE_CH03242 | uracil-DNA glycosylase protein | RecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; | chromosome | CDS | 3409477 | 630 | - | 0.601587 |
| uvrA | RHE_CH02107 | excinuclease ABC subunit A protein | RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; | chromosome | CDS | 2205657 | 2922 | - | 0.626626 |
| uvrB | RHE_CH02563 | excinuclease ABC subunit B protein | RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; | chromosome | CDS | 2671761 | 2886 | + | 0.647956 |
| uvrC | RHE_CH01479 | excinuclease ABC subunit C protein | RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; | chromosome | CDS | 1549459 | 2040 | - | 0.630392 |
| uvrD1 | RHE_CH00573 | ATP-dependent DNA helicase protein | SubName: Full=ATP-dependent DNA helicase protein; | chromosome | CDS | 597433 | 2061 | - | 0.65017 |
| uvrD2 | RHE_CH02819 | DNA helicase II protein | SubName: Full=DNA helicase II protein; | chromosome | CDS | 2940136 | 2427 | + | 0.631232 |
| xerC | RHE_CH03879 | tyrosine site-specific integrase/recombinase protein | RecName: Full=Tyrosine recombinase XerC; | chromosome | CDS | 4110863 | 936 | + | 0.651709 |
| xerD | RHE_CH03827 | tyrosine site-specific integrase/recombinase protein | RecName: Full=Tyrosine recombinase XerD; | chromosome | CDS | 4050609 | 1152 | + | 0.642361 |
| xseA | RHE_CH00276 | exodeoxyribonuclease VII large subunit protein | RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; | chromosome | CDS | 287406 | 1581 | + | 0.662872 |
| xthA1 | RHE_CH01731 | exodeoxyribonuclease III protein | SubName: Full=Exodeoxyribonuclease III protein; EC=3.1.11.2; | chromosome | CDS | 1815750 | 783 | - | 0.61175 |
| xthA2 | RHE_CH01815 | exodeoxyribonuclease III protein | SubName: Full=Exodeoxyribonuclease III protein; EC=3.1.11.2; | chromosome | CDS | 1900798 | 792 | - | 0.592172 |
| xthA3 | RHE_CH03970 | exodeoxyribonuclease III protein | SubName: Full=Exodeoxyribonuclease III protein; EC=3.1.11.2; | chromosome | CDS | 4195199 | 804 | - | 0.608209 |
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