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2024-05-06 16:35:47

Gene list

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COG category: Replication, recombination and repair
Organism: Rhizobium etli CFN 42, CFN 42

Number of genes found: 164

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Rhizobium etli CFN 42, CFN 42
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RHE_CH00128 putative NTP pyrophosphohydrolase protein, MutT/nudix family (responsible for removing an oxidativelydamaged form of guanine from DNA and the nucleotichromosome CDS138852 960 + 0.620833
NA RHE_CH00320 putative endonuclease proteinchromosome CDS326564 315 + 0.666667
NA RHE_CH01852 probable holliday junction resolvase proteinchromosome CDS1939744 495 - 0.614141
NA RHE_CH03355 probable 3-methyladenine DNA glycosylase proteinchromosome CDS3522708 618 + 0.635922
NA RHE_CH03669 probable 6-O-methylguanine-DNA methyltransferase proteinchromosome CDS3885767 873 - 0.631157
NA RHE_PF00426 hypothetical conserved proteinp42f CDS479437 549 + 0.626594
NA RHE_CH00775 probable insertion sequence transposase proteinchromosome CDS813453 384 + 0.598958
NA RHE_CH00027 hypothetical conserved proteinchromosome CDS25916 3195 - 0.653834
NA RHE_CH02833 probable DNA polymerase III, epsilon subunit proteinchromosome CDS2955650 591 - 0.632826
NA RHE_PF00327 hypothetical conserved proteinp42f CDS368111 357 - 0.593838
NA RHE_CH02655 putative insertion sequence transposase proteinchromosome CDS2767515 276 - 0.619565
NA RHE_CH02011 putative insertion sequence transposase proteinchromosome CDS2105294 345 + 0.611594
NA RHE_CH00780 probable insertion sequence transposase proteinchromosome CDS818322 384 - 0.598958
NA RHE_CH02015 putative insertion sequence transposase proteinchromosome CDS2109497 294 - 0.629252
NA RHE_CH02722 putative endonuclease/exonuclease/phosphatase family proteinchromosome CDS2834354 1110 - 0.608108
NA RHE_CH00773 probable insertion sequence transposase protein, IS66 familychromosome CDS812222 681 - 0.609398
NA RHE_CH02721 putative NTP pyrophosphohydrolase protein, MuT/nudix familychromosome CDS2833584 756 - 0.646825
NA RHE_CH00214 probable insertion sequence transposase protein, ISRM11/ISRM2011-2chromosome CDS227446 360 + 0.588889
NA RHE_CH01302 probable DNA polymerase bacteriophage-type (uracil-DNA glycosylase) proteinchromosome CDS1354978 894 - 0.653244
NA RHE_CH01057 hypothetical conserved proteinchromosome CDS1109274 210 - 0.533333
NA RHE_CH00777 probable insertion sequence transposase proteinchromosome CDS814251 1593 + 0.611425
NA RHE_PF00108 probable DNA (cytosine-5-)-methyltransferase proteinp42f CDS117472 1515 + 0.607261
NA RHE_CH00287 probable methylated-DNA-[protein]-cysteine S-methyltransferase proteinchromosome CDS296158 564 + 0.650709
NA RHE_CH02012 putative insertion sequence transposase proteinchromosome CDS2105712 1593 + 0.611425
NA RHE_CH02010 putative insertion sequence transposase proteinchromosome CDS2104914 384 + 0.598958
NA RHE_CH00520 probable insertion sequence transposase proteinchromosome CDS538607 480 + 0.602083
NA RHE_CH02363 probable ribonuclease H proteinchromosome CDS2470715 498 - 0.588353
NA RHE_CH02009 putative integrase proteinchromosome CDS2103363 1386 + 0.554113
NA RHE_CH02967 putative uracil DNA glycosylase proteinchromosome CDS3105474 1455 - 0.624055
NA RHE_CH01739 hypothetical proteinchromosome CDS1823189 315 + 0.555556
NA RHE_CH03151 putative DNA alkylation repair proteinchromosome CDS3304895 1017 + 0.628319
NA RHE_CH01164 probable DNA ligase (ATP) proteinchromosome CDS1218412 1626 + 0.640221
NA RHE_CH00776 probable insertion sequence transposase proteinchromosome CDS813833 345 + 0.611594
NA RHE_CH00519 probable insertion sequence transposase proteinchromosome CDS538138 360 + 0.588889
NA RHE_CH01490 putative DNA replication initiation ATPase proteinchromosome CDS1562089 714 + 0.621849
NA RHE_PF00063 hypothetical conserved proteinp42f CDS62889 372 - 0.567204
NA RHE_CH03050 probable NTP pyrophosphohydrolase protein, MutT/nudix familychromosome CDS3190355 651 - 0.620584
NA RHE_CH02122 putative hydrolase protein, MutT/nudix familychromosome CDS2221650 534 - 0.56367
NA RHE_CH00806 probable NTP pyrophosphohydrolase protein, MuT/nudix familychromosome CDS844500 510 - 0.590196
NA RHE_CH00556 probable DNA glycosylase proteinchromosome CDS575673 684 - 0.631579
NA RHE_CH00779 probable insertion sequence transposase proteinchromosome CDS817981 345 - 0.611594
NA RHE_PF00086 putative NTP pyrophosphohydrolase proteinp42f CDS87161 474 + 0.637131
NA RHE_CH02439 probable uracil-DNA glycosylase proteinchromosome CDS2549810 633 - 0.64297
NA RHE_CH04084 putative nucleotidyltransferase proteinchromosome CDS4328419 1614 - 0.6171
NA RHE_CH03057 probable insertion sequence transposase proteinchromosome CDS3200475 345 - 0.611594
NA RHE_CH02440 putative succinoglycan biosynthesis proteinchromosome CDS2550447 558 - 0.641577
NA RHE_CH00869 hypothetical conserved proteinchromosome CDS910058 1158 - 0.643351
NA RHE_CH03906 hypothetical conserved proteinchromosome CDS4137544 1221 + 0.669943
NA RHE_CH00688 hypothetical conserved proteinchromosome CDS707018 414 + 0.589372
NA RHE_CH00238 probable insertion sequence transposase proteinchromosome CDS253241 348 + 0.623563
NA RHE_CH01539 probable insertion sequence transposase protein, ISRM11/ISRM2011-2 elementchromosome CDS1616732 360 + 0.588889
NA RHE_CH03062 putative hydrolase protein, MutT/nudix familychromosome CDS3203311 552 - 0.625
NA RHE_CH00617 putative DNA ligase proteinchromosome CDS635560 1980 - 0.613636
NA RHE_CH01183 hypothetical conserved proteinchromosome CDS1235837 456 + 0.614035
NA RHE_CH03056 probable insertion sequence transposase proteinchromosome CDS3198809 1593 - 0.611425
NA RHE_PF00110 probable DNA mismatch endonuclease proteinp42f CDS119596 444 + 0.585586
NA RHE_CH01096 hypothetical conserved proteinchromosome CDS1145120 1038 + 0.663777
NA RHE_CH02252 putative endonuclease proteinchromosome CDS2352233 342 - 0.488304
NA RHE_CH02434 hypothetical conserved proteinchromosome CDS2543836 606 + 0.620462
NA RHE_CH00916 probable exodeoxyribonuclease VII small subunit proteinchromosome CDS966190 252 - 0.630952
NA RHE_CH01332 probable insertion sequence transposase protein, IS10chromosome CDS1389655 1209 - 0.449959
NA RHE_CH00732 probable exodeoxyribonuclease III proteinchromosome CDS770109 273 + 0.615385
NA RHE_CH01405 hypothetical conserved proteinchromosome CDS1477357 903 - 0.620155
NA RHE_CH00241 putative recombinase protein, phage integrase familychromosome CDS256048 1584 - 0.566919
NA RHE_CH00026 probable nuclease/helicase protein, ATP dependentchromosome CDS22372 3552 - 0.640484
NA RHE_CH02542 putative NTP pyrophosphohydrolase protein, MutT/nudix familychromosome CDS2652178 417 + 0.59952
NA RHE_CH00235 probable recombinase, resolvase familychromosome CDS251222 570 - 0.566667
NA RHE_CH00237 probable insertion sequence transposase protein, ISRm14chromosome CDS252882 363 + 0.600551
NA RHE_CH01010 putative NTP pyrophosphohydrolase protein, MutT/nudix familychromosome CDS1060481 453 - 0.584989
NA RHE_CH01457 putative DNA polymerase III, chi subunit proteinchromosome CDS1529344 450 + 0.615556
NA RHE_CH03058 probable insertion sequence transposase proteinchromosome CDS3200816 384 - 0.598958
NA RHE_PF00151 putative nucleotidyltransferase proteinp42f CDS159378 1392 + 0.661638
NA RHE_CH00215 probable insertion sequence transposase protein, ISRm2011-2chromosome CDS227915 480 + 0.6
NA RHE_CH00778 probable insertion sequence transposase proteinchromosome CDS816315 1593 - 0.612053
NA RHE_CH04118 putative DNA polymerase III, delta subunit proteinchromosome CDS4371850 1041 + 0.581172
NA RHE_CH02919 probable integrase/recombinase proteinchromosome CDS3051864 1215 - 0.546502
NA RHE_CH01639 probable DNA processing chain A proteinchromosome CDS1726075 1143 - 0.685039
NA RHE_CH00239 probable insertion sequence transposase proteinchromosome CDS253661 1566 + 0.595785
NA RHE_CH01580 hypothetical proteinchromosome CDS1661428 588 + 0.573129
NA RHE_CH00774 probable insertion sequence transposase proteinchromosome CDS812948 348 - 0.603448
NA RHE_CH01977 probable DNA-methyltransferase protein (hemagglutinin-associated protein)chromosome CDS2062742 606 + 0.622112
NA RHE_CH01540 probable insertion sequence transposase protein, ISRM11/ISRM2011-2 elementchromosome CDS1617201 480 + 0.6
NA RHE_CH00782 probable insertion sequence transposase protein, IS1111A/IS1328/IS1533 familychromosome CDS820447 1017 + 0.606686
NA RHE_PF00107 hypothetical conserved proteinp42f CDS115582 1737 - 0.625216
NA RHE_CH02016 putative insertion sequence transposase protein, IS66 familychromosome CDS2109841 363 - 0.600551
NA RHE_CH01485 putative ADP-ribose pyrophosphatase proteinchromosome CDS1557086 591 + 0.593909
NA RHE_CH00395 putative hydrolase protein, MutT/nudix familychromosome CDS411588 639 - 0.636933
NA RHE_CH00836 putative methylase proteinchromosome CDS877390 561 + 0.627451
NA RHE_CH00948 putative NTP pyrophosphohydrolase protein, MuT/nudix familychromosome CDS996622 543 + 0.58011
NA RHE_CH02156 putative deoxyribonuclease protein, TatD familychromosome CDS2261359 687 - 0.609898
NA RHE_CH01993 probable resolvase proteinchromosome CDS2080280 558 + 0.582437
NA RHE_CH01967 putative site-specific recombinase, phage integrase family proteinchromosome CDS2050210 690 + 0.586957
NA RHE_CH02014 putative insertion sequence transposase proteinchromosome CDS2107859 1566 - 0.595147
NA RHE_CH01708 putative ATPase associated with chromosome architecture/replication proteinchromosome CDS1789614 1317 + 0.635535
ada RHE_CH00423 methylated-DNA-[protein]-cysteine S-methyltransferase proteinchromosome CDS438230 1074 + 0.647114
alkA RHE_CH03785 DNA-3-methyladenine glycosidase II proteinchromosome CDS4011844 693 - 0.65368
alkB RHE_CH00039 alkylated DNA repair proteinchromosome CDS42086 612 + 0.629085
ccrM RHE_CH00995 site-specific DNA-methyltransferase (adenine-specific) proteinchromosome CDS1042499 1143 + 0.622922
deaD RHE_CH02179 ATP-dependent RNA helicase proteinchromosome CDS2282640 1956 - 0.654397
dinB RHE_PF00149 DNA-directed DNA polymerase proteinp42f CDS157052 1092 - 0.605311
dinP RHE_CH01629 DNA damage inducible P proteinchromosome CDS1713032 1293 - 0.632637
dnaA RHE_CH00358 chromosomal replication initiator proteinchromosome CDS370494 1551 + 0.629271
dnaB RHE_CH01436 DNA helicase proteinchromosome CDS1506873 1497 - 0.610554
dnaEch1 RHE_CH01627 DNA polymerase III alpha subunit proteinchromosome CDS1707959 3498 + 0.609205
dnaEch2 RHE_CH04083 DNA polymerase III alpha subunit proteinchromosome CDS4324967 3453 - 0.587605
dnaEf RHE_PF00152 DNA polymerase III alpha subunit proteinp42f CDS160769 3264 + 0.627757
dnaG RHE_CH02954 DNA primase proteinchromosome CDS3084575 1998 - 0.638138
dnaN RHE_CH00318 DNA polymerase III, beta chain proteinchromosome CDS324227 1119 - 0.616622
dnaQ RHE_CH00005 DNA polymerase III, epsilon chain proteinchromosome CDS3379 723 + 0.593361
dnaX RHE_CH00126 DNA polymerase III, tau subunit proteinchromosome CDS136339 1875 - 0.6528
fpg RHE_CH00355 formamidopyrimidine-DNA glycosylase proteinchromosome CDS367500 891 + 0.654321
gyrA RHE_CH02110 DNA gyrase subunit A proteinchromosome CDS2210445 2727 + 0.636597
gyrB RHE_CH00012 DNA gyrase subunit B proteinchromosome CDS8271 2436 + 0.618637
helO RHE_CH00057 helicase proteinchromosome CDS58549 2466 - 0.66545
himA RHE_CH01533 integration host factor alpha-subunit proteinchromosome CDS1612109 339 + 0.589971
holB RHE_CH02159 DNA polymerase III delta prime subunit proteinchromosome CDS2264729 1026 - 0.634503
hrm RHE_CH01590 bacterial nucleoid DNA-binding proteinchromosome CDS1674294 276 + 0.605072
ialA RHE_CH04080 nucleoside polyphosphate hydrolase proteinchromosome CDS4323441 534 + 0.623595
ihfB RHE_CH00399 integration host factor beta-subunit proteinchromosome CDS413725 300 - 0.606667
ligA RHE_CH02835 DNA ligase (NAD+) proteinchromosome CDS2957093 2157 - 0.629115
mfd RHE_CH02095 transcription-repair coupling factor (TRCF) proteinchromosome CDS2191936 3504 + 0.63984
mgpS RHE_CH04022 ATP-dependent DNA helicase proteinchromosome CDS4256943 3159 + 0.641026
mutL RHE_CH00848 DNA mismatch repair proteinchromosome CDS887874 1833 - 0.666121
mutS RHE_CH00388 DNA mismatch repair proteinchromosome CDS400314 2727 - 0.657132
mutT RHE_CH03766 NTP pyrophosphohydrolase proteinchromosome CDS3992274 414 - 0.620773
mutY RHE_CH00997 A/G-specific adenine glycosylase proteinchromosome CDS1044727 1104 - 0.641304
nth RHE_CH03671 endonuclease III proteinchromosome CDS3887197 816 + 0.612745
parC RHE_CH01499 DNA topoisomerase IV subunit A proteinchromosome CDS1575738 2256 + 0.612589
parE RHE_CH02188 DNA topoisomerase IV subunit B proteinchromosome CDS2294075 1983 + 0.640948
polA RHE_CH00151 DNA-directed DNA polymerase, DNA polimerase I proteinchromosome CDS164051 3000 + 0.624
priA RHE_CH03875 primosomal protein N` (replication factor Y)chromosome CDS4105979 2217 - 0.651331
radC RHE_CH01848 DNA repair proteinchromosome CDS1936609 825 - 0.631515
recA RHE_CH02323 recombinase A proteinchromosome CDS2422674 1089 - 0.605142
recD RHE_CH02771 exodeoxyribonuclease V alpha subunit proteinchromosome CDS2887136 1128 - 0.620567
recF RHE_CH00141 DNA replication and repair proteinchromosome CDS149341 1125 - 0.650667
recG RHE_CH02093 ATP-dependent DNA helicase proteinchromosome CDS2189436 2106 - 0.64245
recJ RHE_CH01879 single-stranded-DNA-specific exonuclease proteinchromosome CDS1964131 1803 + 0.660566
recN RHE_CH02837 DNA repair proteinchromosome CDS2959868 1674 - 0.655914
recO RHE_CH01394 DNA repair proteinchromosome CDS1467316 771 + 0.66537
recQ RHE_CH02953 ATP-dependent DNA helicase proteinchromosome CDS3082707 1869 - 0.632424
recR RHE_CH00123 DNA recombination proteinchromosome CDS134442 606 - 0.643564
rhlE1 RHE_CH02265 ATP dependent RNA helicase proteinchromosome CDS2367966 1584 + 0.618056
rhlE2 RHE_CH03152 ATP-dependent RNA helicase proteinchromosome CDS3306142 1683 + 0.663102
rnhA RHE_CH00963 ribonuclease H proteinchromosome CDS1011173 456 + 0.618421
rnhB RHE_CH00868 ribonuclease HII proteinchromosome CDS909201 690 - 0.665217
ruvA RHE_CH03481 holliday junction DNA helicase proteinchromosome CDS3665517 615 + 0.650406
ruvB RHE_CH03482 holliday junction DNA helicase proteinchromosome CDS3666214 1041 + 0.643612
ruvC RHE_CH03478 crossover junction endoribonuclease proteinchromosome CDS3664279 510 + 0.617647
ssb RHE_CH02108 single-strand DNA binding proteinchromosome CDS2208863 516 + 0.625969
tag RHE_CH00815 DNA-3-methyladenine glycosylase I proteinchromosome CDS853917 630 + 0.614286
topA RHE_CH01638 DNA topoisomerase I proteinchromosome CDS1723177 2655 - 0.626742
traAch RHE_CH00726 conjugal transfer protein Achromosome CDS761414 4674 + 0.627514
ung RHE_CH03242 uracil-DNA glycosylase proteinchromosome CDS3409477 630 - 0.601587
uvrA RHE_CH02107 excinuclease ABC subunit A proteinchromosome CDS2205657 2922 - 0.626626
uvrB RHE_CH02563 excinuclease ABC subunit B proteinchromosome CDS2671761 2886 + 0.647956
uvrC RHE_CH01479 excinuclease ABC subunit C proteinchromosome CDS1549459 2040 - 0.630392
uvrD1 RHE_CH00573 ATP-dependent DNA helicase proteinchromosome CDS597433 2061 - 0.65017
uvrD2 RHE_CH02819 DNA helicase II proteinchromosome CDS2940136 2427 + 0.631232
xerC RHE_CH03879 tyrosine site-specific integrase/recombinase proteinchromosome CDS4110863 936 + 0.651709
xerD RHE_CH03827 tyrosine site-specific integrase/recombinase proteinchromosome CDS4050609 1152 + 0.642361
xseA RHE_CH00276 exodeoxyribonuclease VII large subunit proteinchromosome CDS287406 1581 + 0.662872
xthA1 RHE_CH01731 exodeoxyribonuclease III proteinchromosome CDS1815750 783 - 0.61175
xthA2 RHE_CH01815 exodeoxyribonuclease III proteinchromosome CDS1900798 792 - 0.592172
xthA3 RHE_CH03970 exodeoxyribonuclease III proteinchromosome CDS4195199 804 - 0.608209