TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-19 15:52:42

Gene list

Applied filters:

COG category: Replication, recombination and repair
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259

Number of genes found: 129

Free access
Sort by:

 

Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thiobacillus denitrificans ATCC 25259, ATCC 25259
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Tbd_2435 exodeoxyribonuclease III xthSubName: Full=Exodeoxyribonuclease III xth; chromosome CDS2505845 768 + 0.636719
NA Tbd_0852 putative hydrolaseSubName: Full=Putative hydrolase; chromosome CDS901923 456 - 0.690789
NA Tbd_2101 DnaB helicaseSubName: Full=DnaB helicase; chromosome CDS2191379 1392 - 0.66523
NA Tbd_2029 nuclease (SNase-like)SubName: Full=Nuclease (SNase-like); Flags: Precursor; chromosome CDS2119915 486 - 0.716049
NA Tbd_1517 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1604264 1797 - 0.69616
NA Tbd_0829 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS874154 1404 - 0.730057
NA Tbd_0517 RecR proteinRecName: Full=Recombination protein RecR; chromosome CDS546945 594 + 0.683502
NA Tbd_0383 formamidopyrimidine-DNA glycolaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS411196 813 - 0.694957
NA Tbd_0365 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS395122 312 + 0.567308
NA Tbd_1016 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1084311 276 - 0.568841
NA Tbd_0001 chromosomal replication initiator protein, DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS137 1374 + 0.633916
NA Tbd_1679 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS1767440 1071 + 0.608777
NA Tbd_0579 putative DNA polymerase III chi subunitSubName: Full=Putative DNA polymerase III chi subunit; chromosome CDS609106 432 - 0.678241
NA Tbd_0438 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS458977 474 + 0.649789
NA Tbd_1540 TatD-related deoxyribonucleaseSubName: Full=TatD-related deoxyribonuclease; chromosome CDS1625583 789 - 0.661597
NA Tbd_2815 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS2896265 1602 - 0.698502
NA Tbd_0703 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS744091 624 - 0.689103
NA Tbd_0379 Conserved hypothetical protein 95SubName: Full=Uncharacterized protein; chromosome CDS407826 573 + 0.712042
NA Tbd_2781 Primosomal protein nSubName: Full=Primosomal protein n; chromosome CDS2861158 2160 + 0.718982
NA Tbd_2276 adenine specific DNA methylaseSubName: Full=Adenine specific DNA methylase; EC=2.1.1.72; chromosome CDS2349228 1680 - 0.602976
NA Tbd_1810 C-5 cytosine-specific DNA methylaseSubName: Full=C-5 cytosine-specific DNA methylase; chromosome CDS1912766 1149 + 0.655352
NA Tbd_2005 probable cp4-like integrase proteinSubName: Full=Probable cp4-like integrase protein; chromosome CDS2092194 1278 - 0.622848
NA Tbd_2110 conserved hypothetical proteinRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS2198973 552 - 0.628623
NA Tbd_2588 DNA repair protein RadCRecName: Full=UPF0758 protein Tbd_2588; chromosome CDS2664044 675 + 0.688889
NA Tbd_2424 N6-adenine-specific DNA methylaseSubName: Full=N6-adenine-specific DNA methylase; chromosome CDS2493960 1197 - 0.670008
NA Tbd_0624 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS655939 2061 + 0.696749
NA Tbd_1942 Serine/Threonine protein kinaseSubName: Full=Serine/Threonine protein kinase; chromosome CDS2035564 1866 - 0.689711
NA Tbd_1057 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1120039 516 - 0.689922
NA Tbd_0631 hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS668466 561 + 0.668449
NA Tbd_2030 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; Flags: Precursor; chromosome CDS2120397 1656 - 0.717995
NA Tbd_2449 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS2518254 2181 + 0.677671
NA Tbd_0828 DNA polymerase III, alpha subunitRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS870925 3072 - 0.709635
NA Tbd_0089 ExonucleaseSubName: Full=Exonuclease; chromosome CDS93724 702 - 0.690883
NA Tbd_2675 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2750091 1332 + 0.59009
NA Tbd_1820 TrwC proteinSubName: Full=TrwC protein; chromosome CDS1919351 2790 - 0.655556
NA Tbd_1318 probable integrase/recombinase proteinSubName: Full=Probable integrase/recombinase protein; chromosome CDS1399557 573 - 0.561955
NA Tbd_0943 putative integrase prophage proteinSubName: Full=Putative integrase prophage protein; chromosome CDS1003571 1203 - 0.574397
NA Tbd_0827 DNA polymerase III, epsilon subunitSubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7; chromosome CDS869458 1413 - 0.682944
NA Tbd_0799 ribonuclease HRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS841944 615 + 0.700813
NA Tbd_0933 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS988978 2799 + 0.626652
NA Tbd_1101 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS1160123 1383 + 0.676067
NA Tbd_1808 site-specific recombinase, phage integrase familySubName: Full=Site-specific recombinase, phage integrase family; chromosome CDS1911396 1059 + 0.609065
NA Tbd_0745 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS788923 1071 - 0.724557
NA Tbd_2457 Transcriptional Regulator, Fis familySubName: Full=Transcriptional Regulator, Fis family; chromosome CDS2528181 240 + 0.604167
NA Tbd_2068 DnaB helicaseSubName: Full=DnaB helicase; chromosome CDS2161338 1401 - 0.65596
NA Tbd_0701 Excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS742011 1797 - 0.663884
NA Tbd_1542 DNA polymerase III delta prime subunitSubName: Full=DNA polymerase III delta prime subunit; EC=2.7.7.7; chromosome CDS1626767 984 - 0.681911
NA Tbd_0475 Serine/Threonine protein kinaseSubName: Full=Serine/Threonine protein kinase; chromosome CDS497701 945 + 0.621164
NA Tbd_0444 NUDIX hydrolaseSubName: Full=NUDIX hydrolase; chromosome CDS464671 441 + 0.650794
NA Tbd_1496 putative helicase ATPaseSubName: Full=Putative helicase ATPase; chromosome CDS1586860 1329 - 0.689992
NA Tbd_2211 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS2289661 1026 - 0.687135
NA Tbd_0812 DNA ligase, ATP-dependentSubName: Full=DNA ligase, ATP-dependent; Flags: Precursor; chromosome CDS853494 921 - 0.700326
NA Tbd_2008 ATP-dependent helicase HrpASubName: Full=ATP-dependent helicase HrpA; chromosome CDS2094965 3828 - 0.682079
NA Tbd_1159 MutS 1 proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1212400 2553 - 0.688602
NA Tbd_0469 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; Flags: Precursor; chromosome CDS491230 2037 - 0.703485
NA Tbd_1674 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS1761048 273 - 0.6337
NA Tbd_0936 adenine specific DNA methylase MODSubName: Full=Adenine specific DNA methylase MOD; chromosome CDS995552 1734 + 0.542676
NA Tbd_1571 probable site-specific integrase/recombinaseSubName: Full=Probable site-specific integrase/recombinase; chromosome CDS1655859 1146 + 0.649215
NA Tbd_1656 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1738365 3441 + 0.674513
NA Tbd_0002 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1689 1104 + 0.648551
NA Tbd_2084 Recombination protein O, RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2177088 771 - 0.701686
NA Tbd_1481 putative phage DNA polymeraseSubName: Full=Putative phage DNA polymerase; chromosome CDS1569278 708 + 0.711864
NA Tbd_1723 putative phage DNA polymeraseSubName: Full=Putative phage DNA polymerase; chromosome CDS1808932 642 - 0.699377
NA Tbd_2528 tyrosine recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS2598405 885 + 0.701695
NA Tbd_1967 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2058972 849 - 0.58775
NA Tbd_1662 DNA polymerase III, epsilon subunitSubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7; Flags: Precursor; chromosome CDS1746795 699 - 0.658083
NA Tbd_1306 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS1384602 2109 + 0.694168
NA Tbd_0347 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS365651 1020 + 0.602941
NA Tbd_2247 DNA ligase, ATP-dependent, putativeSubName: Full=DNA ligase, ATP-dependent, putative; chromosome CDS2321679 2541 + 0.693034
NA Tbd_0858 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS906765 3426 + 0.664915
NA Tbd_1682 nuclease (SNase-like)SubName: Full=Nuclease (SNase-like); Flags: Precursor; chromosome CDS1770049 462 - 0.65368
NA Tbd_0436 Excinuclease ABC, A subunitRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS454617 2823 - 0.663479
NA Tbd_0254 DNA-(apurinic or apyrimidinic site) lyaseSubName: Full=DNA-(Apurinic or apyrimidinic site) lyase; EC=4.2.99.18; chromosome CDS275859 780 - 0.635897
NA Tbd_0971 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1034876 804 - 0.636816
NA Tbd_0997 helicase c2SubName: Full=Helicase c2; chromosome CDS1064266 1932 + 0.677019
NA Tbd_0488 putative TatD related DNaseSubName: Full=Putative TatD related DNase; chromosome CDS507659 771 - 0.692607
NA Tbd_2021 Endonuclease III/NthRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS2110294 690 + 0.676812
NA Tbd_1215 integron integraseSubName: Full=Integron integrase; chromosome CDS1270724 981 + 0.646279
NA Tbd_1491 adenine specific DNA-methyltransferaseSubName: Full=Adenine specific DNA-methyltransferase; EC=2.1.1.72; chromosome CDS1578754 2340 - 0.565385
NA Tbd_0830 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS875579 687 - 0.730713
NA Tbd_0845 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS895031 687 + 0.733624
NA Tbd_1364 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1444555 600 - 0.656667
NA Tbd_2377 methylated-DNA-(protein)-cysteineS-methyltransfe raseSubName: Full=Methylated-DNA-(Protein)-cysteine S-methyltransferase; chromosome CDS2451507 471 + 0.692144
NA Tbd_1812 DNA mismatch endonucleaseSubName: Full=DNA mismatch endonuclease; chromosome CDS1914837 414 + 0.613527
NA Tbd_2580 Holliday junction resolvase YqgFRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS2656021 438 + 0.650685
NA Tbd_1511 Exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1599187 1356 + 0.710914
NA Tbd_0209 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS228660 960 + 0.669792
NA Tbd_0938 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1001040 924 + 0.582251
NA Tbd_2378 tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS2451958 891 + 0.675645
NA Tbd_1663 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS1747503 447 - 0.637584
NA Tbd_1733 DEAD/DEAH box helicaseRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS1817343 1434 - 0.690377
NA Tbd_2104 putative primosomal replication proteinSubName: Full=Putative primosomal replication protein; chromosome CDS2193661 291 - 0.635739
NA Tbd_1771 RecJ exonucleaseSubName: Full=RecJ exonuclease; chromosome CDS1869715 1698 + 0.686101
NA Tbd_1700 Serine/Threonine protein kinaseSubName: Full=Serine/Threonine protein kinase; chromosome CDS1791286 1278 + 0.654147
NA Tbd_1568 Excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1650662 2028 - 0.643491
NA Tbd_2004 Possible Transcriptional RegulatorSubName: Full=Possible Transcriptional Regulator; chromosome CDS2091698 207 - 0.613527
NA Tbd_1966 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2057916 918 - 0.58061
NA Tbd_2436 3-methyladenine DNA glycosylase IISubName: Full=3-methyladenine DNA glycosylase II; EC=3.2.2.21; chromosome CDS2506609 627 - 0.684211
NA Tbd_0515 DNA polymerase subunits gamma and tauSubName: Full=DNA polymerase subunits gamma and tau; EC=2.7.7.7; chromosome CDS544784 1746 + 0.706758
NA Tbd_0010 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS8962 2574 - 0.661228
NA Tbd_0007 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS6865 297 - 0.646465
NA Tbd_2073 putative integrase prophage proteinSubName: Full=Putative integrase prophage protein; chromosome CDS2165580 1338 - 0.646487
NA Tbd_1825 putative DNA helicaseSubName: Full=Putative DNA helicase; chromosome CDS1926423 900 - 0.622222
NA Tbd_0896 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; chromosome CDS944968 1797 + 0.68837
NA Tbd_2819 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2900959 2031 - 0.645002
NA Tbd_2453 DNA polymerase ASubName: Full=DNA polymerase A; EC=2.7.7.7; chromosome CDS2522451 2724 + 0.67511
NA Tbd_2823 putative phage integraseSubName: Full=Putative phage integrase; chromosome CDS2904568 1323 - 0.594104
NA Tbd_0034 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS35262 2511 - 0.7272
NA Tbd_2275 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2346487 2709 - 0.613511
NA Tbd_2387 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS2458278 1698 + 0.649588
NA Tbd_0948 DNA gyrase, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1008562 2550 + 0.638824
NA Tbd_2197 RecA DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2277515 1095 + 0.624658
NA Tbd_1013 integration host factor, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1082656 312 + 0.589744
NA Tbd_0222 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS245480 654 + 0.689602
NA Tbd_0928 transposase InsF for insertion sequence IS3A/B/C/D/E/fASubName: Full=Transposase InsF for insertion sequence IS3A/B/C/D/E/fA; chromosome CDS984317 720 + 0.573611
NA Tbd_0232 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS254089 558 + 0.623656
NA Tbd_2213 DNA recombination protein, RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS2292230 576 - 0.692708
NA Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunitSubName: Full=Putative ATP-dependent exoDNAse (Exonuclease V) alpha subunit; Flags: Precursor; chromosome CDS1773424 2724 - 0.609398
NA Tbd_0033 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS32000 3270 - 0.705199
NA Tbd_0881 Exonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS931230 243 - 0.646091
NA Tbd_0957 integration host factor, beta subunitRecName: Full=Integration host factor subunit beta; chromosome CDS1020248 285 + 0.631579
NA Tbd_2214 Crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS2292927 516 - 0.697674
NA Tbd_0166 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS179706 1983 - 0.655572
NA Tbd_0012 SMF proteinSubName: Full=SMF protein; chromosome CDS11993 963 - 0.728972
NA Tbd_2443 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; chromosome CDS2512184 1035 - 0.700483
NA Tbd_1766 Competence protein ComEASubName: Full=Competence protein ComEA; Flags: Precursor; chromosome CDS1859379 270 - 0.607407
NA Tbd_1058 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1120826 891 - 0.652076
NA Tbd_2130 A/G-specific adenine glycosylase MutYSubName: Full=A/G-specific adenine glycosylase MutY; chromosome CDS2217846 1035 + 0.685024
NA Tbd_0003 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS2860 2472 + 0.637945