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2024-05-07 23:12:52

Gene list

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COG category: Replication, recombination and repair
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259

Number of genes found: 129

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thiobacillus denitrificans ATCC 25259, ATCC 25259
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tbd_1663 ribonuclease HIchromosome CDS1747503 447 - 0.637584
NA Tbd_1496 putative helicase ATPasechromosome CDS1586860 1329 - 0.689992
NA Tbd_0828 DNA polymerase III, alpha subunitchromosome CDS870925 3072 - 0.709635
NA Tbd_2030 DNA repair protein RecNchromosome CDS2120397 1656 - 0.717995
NA Tbd_0383 formamidopyrimidine-DNA glycolasechromosome CDS411196 813 - 0.694957
NA Tbd_0829 conserved hypothetical proteinchromosome CDS874154 1404 - 0.730057
NA Tbd_2435 exodeoxyribonuclease III xthchromosome CDS2505845 768 + 0.636719
NA Tbd_1481 putative phage DNA polymerasechromosome CDS1569278 708 + 0.711864
NA Tbd_0436 Excinuclease ABC, A subunitchromosome CDS454617 2823 - 0.663479
NA Tbd_2457 Transcriptional Regulator, Fis familychromosome CDS2528181 240 + 0.604167
NA Tbd_0943 putative integrase prophage proteinchromosome CDS1003571 1203 - 0.574397
NA Tbd_2675 hypothetical proteinchromosome CDS2750091 1332 + 0.59009
NA Tbd_0003 DNA gyrase, B subunitchromosome CDS2860 2472 + 0.637945
NA Tbd_0938 hypothetical proteinchromosome CDS1001040 924 + 0.582251
NA Tbd_1058 hypothetical proteinchromosome CDS1120826 891 - 0.652076
NA Tbd_1215 integron integrasechromosome CDS1270724 981 + 0.646279
NA Tbd_0812 DNA ligase, ATP-dependentchromosome CDS853494 921 - 0.700326
NA Tbd_1733 DEAD/DEAH box helicasechromosome CDS1817343 1434 - 0.690377
NA Tbd_1318 probable integrase/recombinase proteinchromosome CDS1399557 573 - 0.561955
NA Tbd_2005 probable cp4-like integrase proteinchromosome CDS2092194 1278 - 0.622848
NA Tbd_0933 DEAD/DEAH box helicasechromosome CDS988978 2799 + 0.626652
NA Tbd_1820 TrwC proteinchromosome CDS1919351 2790 - 0.655556
NA Tbd_0469 ATP-dependent DNA helicase RecGchromosome CDS491230 2037 - 0.703485
NA Tbd_0488 putative TatD related DNasechromosome CDS507659 771 - 0.692607
NA Tbd_0896 ATP-dependent DNA helicase RecQchromosome CDS944968 1797 + 0.68837
NA Tbd_0089 Exonucleasechromosome CDS93724 702 - 0.690883
NA Tbd_2436 3-methyladenine DNA glycosylase IIchromosome CDS2506609 627 - 0.684211
NA Tbd_2214 Crossover junction endodeoxyribonuclease RuvCchromosome CDS2292927 516 - 0.697674
NA Tbd_2101 DnaB helicasechromosome CDS2191379 1392 - 0.66523
NA Tbd_0517 RecR proteinchromosome CDS546945 594 + 0.683502
NA Tbd_0745 conserved hypothetical proteinchromosome CDS788923 1071 - 0.724557
NA Tbd_1766 Competence protein ComEAchromosome CDS1859379 270 - 0.607407
NA Tbd_2815 DEAD/DEAH box helicasechromosome CDS2896265 1602 - 0.698502
NA Tbd_2580 Holliday junction resolvase YqgFchromosome CDS2656021 438 + 0.650685
NA Tbd_0579 putative DNA polymerase III chi subunitchromosome CDS609106 432 - 0.678241
NA Tbd_1016 hypothetical proteinchromosome CDS1084311 276 - 0.568841
NA Tbd_1517 DNA mismatch repair proteinchromosome CDS1604264 1797 - 0.69616
NA Tbd_0034 conserved hypothetical proteinchromosome CDS35262 2511 - 0.7272
NA Tbd_1511 Exonuclease VII, large subunitchromosome CDS1599187 1356 + 0.710914
NA Tbd_0852 putative hydrolasechromosome CDS901923 456 - 0.690789
NA Tbd_0827 DNA polymerase III, epsilon subunitchromosome CDS869458 1413 - 0.682944
NA Tbd_2449 ATP-dependent DNA helicasechromosome CDS2518254 2181 + 0.677671
NA Tbd_0701 Excinuclease ABC, C subunitchromosome CDS742011 1797 - 0.663884
NA Tbd_1771 RecJ exonucleasechromosome CDS1869715 1698 + 0.686101
NA Tbd_2073 putative integrase prophage proteinchromosome CDS2165580 1338 - 0.646487
NA Tbd_0033 conserved hypothetical proteinchromosome CDS32000 3270 - 0.705199
NA Tbd_1966 conserved hypothetical proteinchromosome CDS2057916 918 - 0.58061
NA Tbd_0948 DNA gyrase, subunit Achromosome CDS1008562 2550 + 0.638824
NA Tbd_1700 Serine/Threonine protein kinasechromosome CDS1791286 1278 + 0.654147
NA Tbd_0631 hypothetical proteinchromosome CDS668466 561 + 0.668449
NA Tbd_1306 ATP-dependent DNA helicasechromosome CDS1384602 2109 + 0.694168
NA Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunitchromosome CDS1773424 2724 - 0.609398
NA Tbd_0928 transposase InsF for insertion sequence IS3A/B/C/D/E/fAchromosome CDS984317 720 + 0.573611
NA Tbd_2110 conserved hypothetical proteinchromosome CDS2198973 552 - 0.628623
NA Tbd_2424 N6-adenine-specific DNA methylasechromosome CDS2493960 1197 - 0.670008
NA Tbd_1662 DNA polymerase III, epsilon subunitchromosome CDS1746795 699 - 0.658083
NA Tbd_2213 DNA recombination protein, RuvAchromosome CDS2292230 576 - 0.692708
NA Tbd_2247 DNA ligase, ATP-dependent, putativechromosome CDS2321679 2541 + 0.693034
NA Tbd_0799 ribonuclease Hchromosome CDS841944 615 + 0.700813
NA Tbd_2823 putative phage integrasechromosome CDS2904568 1323 - 0.594104
NA Tbd_1491 adenine specific DNA-methyltransferasechromosome CDS1578754 2340 - 0.565385
NA Tbd_1808 site-specific recombinase, phage integrase familychromosome CDS1911396 1059 + 0.609065
NA Tbd_1942 Serine/Threonine protein kinasechromosome CDS2035564 1866 - 0.689711
NA Tbd_2004 Possible Transcriptional Regulatorchromosome CDS2091698 207 - 0.613527
NA Tbd_2211 Holliday junction DNA helicase RuvBchromosome CDS2289661 1026 - 0.687135
NA Tbd_0830 conserved hypothetical proteinchromosome CDS875579 687 - 0.730713
NA Tbd_2453 DNA polymerase Achromosome CDS2522451 2724 + 0.67511
NA Tbd_0475 Serine/Threonine protein kinasechromosome CDS497701 945 + 0.621164
NA Tbd_2008 ATP-dependent helicase HrpAchromosome CDS2094965 3828 - 0.682079
NA Tbd_0012 SMF proteinchromosome CDS11993 963 - 0.728972
NA Tbd_0438 Single-strand binding proteinchromosome CDS458977 474 + 0.649789
NA Tbd_0254 DNA-(apurinic or apyrimidinic site) lyasechromosome CDS275859 780 - 0.635897
NA Tbd_1013 integration host factor, alpha subunitchromosome CDS1082656 312 + 0.589744
NA Tbd_0347 hypothetical proteinchromosome CDS365651 1020 + 0.602941
NA Tbd_1674 Histone-like DNA-binding proteinchromosome CDS1761048 273 - 0.6337
NA Tbd_1825 putative DNA helicasechromosome CDS1926423 900 - 0.622222
NA Tbd_1682 nuclease (SNase-like)chromosome CDS1770049 462 - 0.65368
NA Tbd_2104 putative primosomal replication proteinchromosome CDS2193661 291 - 0.635739
NA Tbd_2588 DNA repair protein RadCchromosome CDS2664044 675 + 0.688889
NA Tbd_2029 nuclease (SNase-like)chromosome CDS2119915 486 - 0.716049
NA Tbd_1159 MutS 1 proteinchromosome CDS1212400 2553 - 0.688602
NA Tbd_0010 DNA topoisomerase Ichromosome CDS8962 2574 - 0.661228
NA Tbd_0365 hypothetical proteinchromosome CDS395122 312 + 0.567308
NA Tbd_0001 chromosomal replication initiator protein, DnaAchromosome CDS137 1374 + 0.633916
NA Tbd_1571 probable site-specific integrase/recombinasechromosome CDS1655859 1146 + 0.649215
NA Tbd_2276 adenine specific DNA methylasechromosome CDS2349228 1680 - 0.602976
NA Tbd_2377 methylated-DNA-(protein)-cysteineS-methyltransfe rasechromosome CDS2451507 471 + 0.692144
NA Tbd_2443 DNA polymerase III, delta subunitchromosome CDS2512184 1035 - 0.700483
NA Tbd_2781 Primosomal protein nchromosome CDS2861158 2160 + 0.718982
NA Tbd_0222 conserved hypothetical proteinchromosome CDS245480 654 + 0.689602
NA Tbd_2068 DnaB helicasechromosome CDS2161338 1401 - 0.65596
NA Tbd_2819 conserved hypothetical proteinchromosome CDS2900959 2031 - 0.645002
NA Tbd_1101 DEAD/DEAH box helicasechromosome CDS1160123 1383 + 0.676067
NA Tbd_0515 DNA polymerase subunits gamma and tauchromosome CDS544784 1746 + 0.706758
NA Tbd_0379 Conserved hypothetical protein 95chromosome CDS407826 573 + 0.712042
NA Tbd_0444 NUDIX hydrolasechromosome CDS464671 441 + 0.650794
NA Tbd_1057 conserved hypothetical proteinchromosome CDS1120039 516 - 0.689922
NA Tbd_0703 conserved hypothetical proteinchromosome CDS744091 624 - 0.689103
NA Tbd_0881 Exonuclease VII, small subunitchromosome CDS931230 243 - 0.646091
NA Tbd_2084 Recombination protein O, RecOchromosome CDS2177088 771 - 0.701686
NA Tbd_1810 C-5 cytosine-specific DNA methylasechromosome CDS1912766 1149 + 0.655352
NA Tbd_1812 DNA mismatch endonucleasechromosome CDS1914837 414 + 0.613527
NA Tbd_0232 conserved hypothetical proteinchromosome CDS254089 558 + 0.623656
NA Tbd_0166 ATP-dependent DNA helicasechromosome CDS179706 1983 - 0.655572
NA Tbd_0845 conserved hypothetical proteinchromosome CDS895031 687 + 0.733624
NA Tbd_2130 A/G-specific adenine glycosylase MutYchromosome CDS2217846 1035 + 0.685024
NA Tbd_0002 DNA polymerase III, beta chainchromosome CDS1689 1104 + 0.648551
NA Tbd_2378 tyrosine recombinase XerDchromosome CDS2451958 891 + 0.675645
NA Tbd_0971 conserved hypothetical proteinchromosome CDS1034876 804 - 0.636816
NA Tbd_0858 DNA polymerase III, alpha subunitchromosome CDS906765 3426 + 0.664915
NA Tbd_0209 conserved hypothetical proteinchromosome CDS228660 960 + 0.669792
NA Tbd_2021 Endonuclease III/Nthchromosome CDS2110294 690 + 0.676812
NA Tbd_0936 adenine specific DNA methylase MODchromosome CDS995552 1734 + 0.542676
NA Tbd_0957 integration host factor, beta subunitchromosome CDS1020248 285 + 0.631579
NA Tbd_0997 helicase c2chromosome CDS1064266 1932 + 0.677019
NA Tbd_1656 transcription-repair coupling factorchromosome CDS1738365 3441 + 0.674513
NA Tbd_0007 Histone-like DNA-binding proteinchromosome CDS6865 297 - 0.646465
NA Tbd_2197 RecA DNA recombination proteinchromosome CDS2277515 1095 + 0.624658
NA Tbd_0624 NAD-dependent DNA ligasechromosome CDS655939 2061 + 0.696749
NA Tbd_1723 putative phage DNA polymerasechromosome CDS1808932 642 - 0.699377
NA Tbd_2275 hypothetical proteinchromosome CDS2346487 2709 - 0.613511
NA Tbd_1364 conserved hypothetical proteinchromosome CDS1444555 600 - 0.656667
NA Tbd_2528 tyrosine recombinase XerCchromosome CDS2598405 885 + 0.701695
NA Tbd_1542 DNA polymerase III delta prime subunitchromosome CDS1626767 984 - 0.681911
NA Tbd_1540 TatD-related deoxyribonucleasechromosome CDS1625583 789 - 0.661597
NA Tbd_1568 Excinuclease ABC, B subunitchromosome CDS1650662 2028 - 0.643491
NA Tbd_1679 site-specific recombinase, phage integrase familychromosome CDS1767440 1071 + 0.608777
NA Tbd_2387 DNA primasechromosome CDS2458278 1698 + 0.649588
NA Tbd_1967 conserved hypothetical proteinchromosome CDS2058972 849 - 0.58775