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# Desulfovibrio desulfuricans G20, G20

>Dde_2774 hypothetical protein
MFRPSERRRRRNKSTMAVDNTHNPHTHDHTATTATTSNTATAHYSHLKPK
AYSYLRFSTPDQMKGDSFRRQTELSRMYAEENGLDLDDTLTFQDLGVSAF
RGKNAEEGELGAFIEAVDQGKVKRGSFLLVESLDRLSRQSPYKAFLQFSN
ILNRGLSIVTLQDGKVYSAGSNGNDLAFSDLMVSIAVMQRAYEESLTKSR
RLSEVWKAKRRKAADGSLKLTSRCPEWLKLDKKNNTFHVIEERAAIVQRI
FEMTLDGIGKRVIAATFNAEGIKPFGRGKGWHYSYVTKILENEATIGRYQ
PHKMQEVQGKRKRVPVGEPIENYFPAVISEETFLKAKRMRKERKIAGANV
GNRYSNLFSGLAVCGVCGGVMHFENKGKPPKGGTYLVCSNARMKLGCKRY
SWRYPQAQAHILMNLTELNYRELFPTLYEKSRESVERLQDKLLVMEERLK
ATEAKLERLTNILIERPHSSTLLTRLDALEEEKQGLIVGIEKAARDLSEE
QERVEGAGKEYEELEDALQRYIEIEEAGEPDAILEARRRLFQLLKQVIES
ITFMPASSNDKDEKPELDYQGNPIHGTIEIRFRGVTDYSRRIKVAGNQED
SRGFKIIFNEKGEVSEEEEQTIIVDAQWPPRDRIVTASFVADLL
>Dde_1398 transposase-like
MSSPKRRTYDSEFKQNAVLLTEDPSRTVTEVAESLGVAKDLLYRWRREFA
AQGKVAFSGRGNPALTDEQRRIRELEKKLKNAELERDILKKALAIFSSAP
K
>Dde_0623 conserved hypothetical protein
MGRLIKYSKEFKLSAVKLVTELGYSCREAGEQLGCSSWSVRDWVRQLRAS
GDIPPENVTAASAQDMKALREENARLRLENEILKKAAAYFAKESL
>Dde_1361 polymerase most proteins contain PALM domain HD hydrolase domain and Zn-ribbon domain-like
MSHDDTAHSGQKTGSANADAVVRFNASKDYMKVGIARYVPPKGKGSPLSV
DLMAEQLAKAGIRVPLDVNAARTVIEKLQAGEDVTKIVVARGVPPVAGTN
GRLMCFGDERFPVFPGMAFGTLMPAIPAQGGMRIDGKPVSPPPELLSCDL
QIADHGNCSMQEQGGQLVAEVYGTVMVTGCVVQVLPLITVASDRLRITAT
LYHRDCLGIPVTLERLRELLDTMGVVAPLNEKPVRDALLRAAETGGPVHD
VEIARGVMPRHGTDGCLELLFDTMEMAGKVGADGTIDYKDRGSLPVVTEG
EAVALLYPPTAGDAGRDVFGESVAPHPGRPVPCVLCPKSIVEDEDGVTLR
AALDGFVQHAKGRLSVENMYVVRGDVSMETGNVDLQRGALLVRGNVLSGF
SVNCPENITVQGVVEAAFLHTGGDLLAGGLVLQDQGHVIVEGNLKAGFIS
EGSVDVRGNIQVTKSIDNSDVTCGGLVALGGSGRIVGGTVRSKGGVRVGQ
LGNELGVRTHVIIELDMKALEDMEEEVRTRRAAIKRINETLGTGSDEDIL
NQVRQENYKAVEKLLVIREEAQRSIESGKEKLAELKKVTKERLANVSVQV
SGVVYPGTVVTFEDRSFEVSSPVSQCEFRMASSKRVVELRSLGKVIAASE
EEE
>Dde_0858 CRISPR-associated protein Cas1
MTCILLEPGTRVSHAAVVLAARSGTLLVWTGEAGVRLYASGQPGGARSDK
LLYQAKLALDDTARLKVVRRMFAMRFQEQAPDRRSVNQLRGLEGARVRAL
YSLLAKQYKVPWKGRKYDPKDWESGDLPNRCISAATACLYGVCEAGILAA
GYAPAIGFLHTGKPQSFVYDIADLFKFETVVPVAFRVAAGKPVNPDQAVR
LACRDMFRKTKLLQRIIPTIEEVLAAGEIAPPEIEGVVTPAIQEKEGIGD
DGHRG
>Dde_0756 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_0551 exodeoxyribonuclease III
MNSPAAARTVLLTVMGSSFLRQHSTVAALLQPVCCRHRRYGFILPRSVLH
TVYVRFAAPLRRAYLLRIFTPPFQGKGGFEIVKLYSWNVNGFRAIRQKPD
WDWFSGCDADVIGLQETKAMPEQIDPADRNPAGYHSYWLGATVKKGYSGV
AAFSRREPLSVAYDLPVEQYQGEGRVIMLEYDAFYYFNIYFPNGQSGDER
LQYKLGFYDAFLEHAQTLRRKKPIVVCGDFNTAHRPVDLARPRENEGTSG
FLPVERAWMDKFIDHGYVDTFRLVHPDAQAMYSWWSYRFKARDRNVGWRI
DYFFVSDELRHAVKDATIEMEVFGSDHCPVGLELAL
>Dde_2032 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_2402 apurinic endonuclease (APN1)
METISRQNKPQQQLIGAHMSAAGGVHKAVERAEAAGATALQVFTRNQRQW
NAPPLEEHDAELFTAAVRRWGGYPVSSHASYLINPAADTPEGAERSVALM
ADELQRAGRLGIEMVVVHPGAHKGQGEAAGAALAAARLDEALERCGSPAV
MVLLENTAGQGTMLGASFAGLAAVIEASRMPERYGICLDTAHAFGAGYDL
RDAALYDAAIRELDVCAGLDRLRLVHANDSLTGLGSRRDRHTHIGQGELG
EAAFRLLMRDERLHHVPKVLETPKGKGPEEDMMNMAVLRRLACP
>Dde_0251 mutator mutT protein
MKSVDVVAGILWRGGRFLAVERPQGRPRAGFWEFPGGKIEQGETPEQALA
RELKEELGVDVRDFCFWRSVEHAYEDLAVRLRFFHVTGFAGEPQGLEGHR
LAWLRCDEALRLRFLEADRPLVADLATITF
>Dde_2442 DNA repair protein RadC
MVNEPHYHGHRQRLREKLKKDSTQLADYEILELILGMVLRRQDTKPLAKR
LLGRFGSLRGVLDARPQELMAEKGVGPAMESFWLLLREFIARYAEAPMRE
RTLLVSSRAVADMARTRLAGCPHEEVWVAYMDRQNRLLAWERATRGTVNA
SAIYPRDLMEAALRYKASGLILVHNHPGGSARPSAPDVEVTKLVARSAAS
LGMTLVDHVIVTEEGHYSLKEDGLF
>Dde_3365 ISSod2, transposase OrfA
MKKSRYTDSQILNILKQAENGVPIPELCREHGMSSATFYKWRAKYGGMDA
SLMARMKELERENRQLKKMYAEERLKAEIVKEALEKKW
>Dde_1743 Adenine specific DNA methylase Mod-like
MYPRLKIARSLLTHDGVIFISIDDGEQPNLRKICDEIFGEENFISCIMRK
RKKEISSDSKNVSIQGEYVLAYAKSNEVSFMSEPLSEKYIAKTYKEPTRE
FPEGKWRPVPITVSKGLTGGGYRYSITTPGGTTHDRLWAYPKEGYERLLK
SGRVYFGANKNGVPQRVIYAHESNGQPTTNYWDNSPTNKEGKKEVLNIFG
DNVFDTPKPTALLQRLIALVSKEEDIILDFFSGSCATAHAVMKGNVYEKT
KRKFIMVQLPEPCDKNSSAFKSGFSTIAELGKERIRRVISQLSEDNLSYS
GDLGFKVFKLESSNIVAWNPDKSDLENTLMAHSEHLVPGRSEQDVLYELL
LKRGVELTAPIEEKEIAGKKVYSIGFGVLFACLDKKIQRDQIEELAHGII
DWHKELDPISDTQVVFRDSAFENDVTKANMTAILEQSGIKHVRSL
>Dde_0514 uracil-DNA glycosylase
MSRSDVFADAPPADWAQAVPLLREGAHLPLLRSVARLRRSKTVYPPEGQV
FAALHCTPLHTVRVVIVGQDPYHGAGQAHGLAFSVPQGVKPPPSLRNVLK
EAAAQKPEAPAAAGMQHNGVQTDLTPWAEQGVLLLNTALTVEAGRAGSHA
ALGWHAVTDDIIRTVSERCPAVVFMLWGNHARQKAALVDTGRHLLLESVH
PSPFSAHKGFLGCGHFVTANSWLAARGLLPVLW
>Dde_2753 conserved hypothetical protein
MDIRVVMLSAFTVAGIRAYGPYSVSAPEAWNTLAPWLARMEKSGAELSYW
GIMHDDIHITQPEKIRYDAMVAVPADLRLDGSVFARRMDACEYAMAEHKG
PYHEVQAIWLSLFWDWLPFSGRCPATLPCLEQYMGNPVRTPSALLTTRLY
LPLAPL
>Dde_3361 transposase
MQRIDELFMELPFFGSRQMRNILRDEGHFVGRNRVRRLMRKMGLMAVYQK
PRTSQPHPQHKTYPYLLRGKAITKPNQVWCADITYIPMRRGFLYLVAIMD
WHSRAVLSWRLSNTMDADFCVAALEEAMNRYGVPDIFNTDQGSQFTSYEF
TRTLRQAGAKISMDGRGRWMDNVMIERLWRSLKYECVYLREIETGSELRR
TLAWWFEFYNNRRPHKTFDGRKPMEIYQQFKPEGVPPLACPRKAA
>Dde_2096 excinuclease ABC, B subunit
MQDSVFRIESEYVPRGDQPEAITQLSDNIRAGVAHQVLLGVTGSGKTFTM
AHTIERCQRPALILAPNKTLAAQLYNEFRALFPHNAVEYFVSYYDYYQPE
AYVPTSDTYIEKDSSINDNIDKLRHAATHALLTRRDVIIIASVSCIYGLG
SPEYYAKMVIPVEAGQHMSMDSLIGRLVDVQYERNDYDFHRGTFRVRGDV
LEVIPAYHHERALRLEFFGDEIDSIKEIDPLTGNVLGDVGKTVIYPASHY
VSDRDNLNRAVSDIREELRLRLEEYRQGNRLVEAQRLEQRTMLDLEMIEE
MGYCTGIENYSRHLDGRTAGEPPACLLDYFPDNFILFVDESHITVSQVGA
MYKGDRSRKQTLVDFGFRLPSALDNRPLEFSEFEKRLNQVVYVSATPSRW
ELDRSEGIVVEQIIRPTGLLDPLTEVRPTKGQMEDLMTECRSRTARDERV
LVTTLTKRMAEDLTEYLTSMGVSARYLHSDIDTMERMAIIQALRRKEFDV
LVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRAARNVDGR
VIMYADSVTRSMTAAMQETERRREKQRLYNEEHGIEPVSVRKSLETPFDT
LYSDARSAAAKGRGKGRGRQAAPAQTAAEDTTAYGISAEELGGLIQRLER
EMRESARDLEFEKAAELRDRIRMLRERLLQQD
>Dde_1093 endonuclease-like
MVARRAAGSCPAHIAAGRLGEEAACAYLAASGMRILARNWRAGHLELDII
AQDNGTIVFAEVKTRAARGLESPHEALTPAKRSRLVRAAGMWLSSNDMWD
RPCRFDLVCVTTEARAPEPEQMSLQAARAAGTAQARRAAGSGLPGILGKA
ASRLFGAGSPQRSHRAGGAPDSPEQLLRVEHIPHAFDLSESLGGGDAAWQ
PW
>Dde_0477 transposase for IS200
MANQKEVTMGDAKSLAHTKWNCKYHVVFAPKYRRQVFYGEKKRAVGEILR
KLCEWKGVHIVEAECCPDHVHMLLEIPPKMSVSSFMGYLKGKSSLMLYDQ
FGDLKFKYRNREFWCRGYYVDTVGKNKAKIQDYIKH
>Dde_3701 DNA-3-methyladenine glycosylase I
MNAPAHDTRCPWARTPEETAYHDHEWGVPVRDDRRHFEFLVLEGAQAGLS
WLTVLRRREGYRSAFAGFDPAAVAAFDESRMAALQQDTRIIRNRLKIASA
VRNARAFLRVQEEFGSYDSYIWRFTGGRPVQNQWRSIEEVPAATPLSDRI
SRDMKQRGFNFVGSTIVYALMQATGMVNDHLVTCPRHAPVRALGEGM
>Dde_1172 ATP-dependent helicase HrpB
MSLFLPAATQQLPVSGILQELTDTLARTTCCVLQAPPGAGKTTAVPLALL
HAQLPAGRIVMLEPRRLAARSAARRMAQMLGQRTGETVGFRVRHHSCTGS
GTRIEVVTEGVLTRMVQSDPALTDVACVIFDEFHERSLQGDLGLTLCLEV
QAALRPELRLIVMSATLDGAPVAALMGGCPVLTATGRSHAVHTRHFAPPA
GRSMLDRHHCIQLIADGIRRALYEEQGSILAFLPGLREITLVAEALQGAV
SPDGCRVQVLPLHGRLPPQQQDAAICPAPQGVRKVVLSTSVAETSLTLEG
IRIVVDSGLTRKAQFDPRSGMTGLVTRRASLAAAAQRQGRAGRLQEGICY
RLWSKADEPAMPAFDRPEILEADLVPLALELARWGACDHNSLPWLTPPPH
SSMEQAAMLLCQLGALKPAPSTGLRHITQHGARMAALPVHPRLAHMVITA
ADTGQPDILEQACRIAAVFSEAPSALRRQADLCTVIEDAATGRTTDSRTA
ARTAQMTRRLAAAAGKGPDDRPAVQALRTLPADARCAALCALAFPDRIGK
ATGQGRFLLTCGRAAIVAATHPLAGSPFIVAAELDGQNADARIHAAAALD
SRTVETLYADNIAQQDNIQWNPQTEAVEATTQRTLWKLPLEVRPLAEKPH
TQAAVQAMCEGIRSMGLSALPWTRETETLRQRVMLLRRHEPCGADQINIW
PDFSEETLLATLETWLAPFLDGIRRRTQLKNLNLKTALQAMLPWPLPARL
EQEAPELLTVPSGSNIRLDYSGPVPVLAVKLQEMFGATATPAIGNGRIPV
LVHLLSPAGRPLQITQDLEGFWKNGYRQVKAEMKGRYPKHPWPDDPVSAR
PTRRTNTGSKNVS
>Dde_1735 putative resolvase
MAHVGYIRVSSIDQNTDRQLADLDCNLVTEVFEEKASAATSKRPKLEECM
RFVRKGDTLHVHSIDRLARNLDDLLTLLKKFIGKGVAVQFHKEGLTFTGE
DNPFQTLQLQIIGAVAQFERSIIKERQREGIAKAQAKGKHCGRRAKLTPE
QAEELRHRATVMGEEKKALAAEYGISRQTLYRVIAESN
>Dde_3362 transposase (class V)
MSKKRRKFTAEFKTRVALDALSGEHTLSEIASKYGVHPNQVSQWKKQAKE
GIAASFSGKAQKVQQSDEARIKELHAKIGQLTVEKDFLQQAFAKI
>Dde_1923 conserved hypothetical protein
MMDRITVVVDTREQEPYSFDTDKVSAVRKALPAGDYSLVGLEERVAVERK
SLTDFVSTVIRGRKRFHRELEKLSAYESACVVVECNFRDLVDGRYRSDAH
PHALIGTVASIVVDFGVPVYFCSDRQAACRFVEEYLTRFHRRIARCQKEM
RVTRRDSGEE
>Dde_2906 putative transcriptional regulator, Fis family
MKRSKFTDEQIAFALRQAETGTKINEVCRKMGISEATFYNWKKKYGGIGV
SELRRLKQLEEENRQLKKLVADLSLDKQMLQDVLTKKL
>Dde_1397 transposase-like
MKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGS
PMITEDLRAEDAFRHVSRSRVARHMREMGLRCQTMKKFVVTTDSSHSEPV
APNVLNRRFSASAPNVTWVSDITYIKIGRTWHYLTVFIDLYSRLVVGWDL
SASLERHSVIHAFRKAVARRRPSKGLLVHSDRGIQYASRDFRKELHRHGC
IQSMSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAELALFHYIEAY
YNRRRRHSSNGWMSPAAFENFNQEYKKVA
>Dde_1673 ISPsy11, transposase OrfB
MAACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRK
LYSLLCDAISAKGIKLGRDALFALLRKEHMLIRHKRNYTKTTNSKHWLKK
HPNLFKDIRPSSPEQVFVSDITYLSTREQTYYLTLVTDAYSRKIMGHSLN
RDLGAEGVSKALEKAARNRLTTKEAIHHSDRGLQYASTIYQDKLSKAGML
CSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAVVDESIGIYNT
ERPHLSLNMKTPEYVHKMGCEVALTAQT
>Dde_2807 nuclease (SNase-like)
MNKVTTMPITKHKALPLIAYLLFFFLSCSLISPSLIVTAQAREDDDGATP
TPSYTSTNVVIVSRVTSVYDGDTFRCDIDGWPAIIGKNIGIRINGIDTPE
MRDKRPQVKALAIEARDFVRSRLKEANVIELRNIQRGKYFRIVADVYLDG
SVNLAEELIQRGLACEYHGGKKVFDWEK
>Dde_2320 chromosomal replication initiator protein DnaA
MINAWAQIEHTLRDNLNPGLFKVWIKPLAAEQAGDSLRLVAPNAFVASWV
RDRLMNEIEKAAASVLGSVPTITVVSGEEPAAAPRPVQVPAQKRPAAART
SGAEQMGLPLHYASRSADSIKWMHSFDEFVVGPSNQMAFAASQDICQQSF
RSDTLFLSSDPGLGKTHLLHAVGQQLCNISNRTLPRVEYLTAEEFATRLI
CALKAKEVDRFKARYRDVDVLLLEDVHFLQGKQRMQDEVLSTVKALQSRG
AKVLFSSSFAPKDLNDLDSQLTSRFCSGLLAVIEKPTFETRKQILREKAR
LHHVQLPEQVADLLADNIRADVRQIESCLRNLLLKARLLNQQITMDMAWE
IIGHYAKREAVLDIDAIVRQICSGFDISKEQLQSRSRRRELVIARNTAFF
LARKHTDLSLEEIGKRFNRKHSTVIKGIANIEREMNKETPLGRQVVNAVN
MVERNGRIIHP
>Dde_0896 Site-specific recombinase
MLNNNNTQNGQRKTLRCAIYTRKSHEEGLDQEFNSLDAQREAAEAYIESQ
KLQGWKAIPYRYDDGGFSGGTMERPALQRLLADIDAGKIDVIVVYKIDRL
SRSLLDFMKMIELFNEKEVSFVSVTQHFSTTDSTGRMFLGILITFAQYER
EVIGERIRDKVAAAKRRGKYCGGPAVLGYDVDRENKKLLINQSEAPLVKL
IFRRYTQVGSAKKVAQELNEQGYKTKSWTTKKGKERIGTEWNTAQVYRLL
NNRLYIGEIAYKGKNYPAEHDALIDQNTWDKVQALLSENNRTKMSKARVK
MVSPLSGVIRCGHCDSAMGITYTNKGDRRYSYYICEKDTKRAVSRCPLKR
VPAGDIESVVLDQLGAVFRTPTLVAKTYFAAREIEAEERERLQVQKKELE
QSLQSVRQEALKLMSPDNDDPDRNSRLPLVNQQAVDLTKQLTNVSARLKV
IDTEQISEGDVSEAFQSVKTFWEDLFPLERNRLIQLLVETIEIRETGIDM
ELKTNGLTNLVTELAGLACEVRERSNS
>Dde_0534 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_1567 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_2513 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_1746 type III restriction system methylase
MQKMTPSDGQSMNVVDENIEVLKKAFPEAFTEDGIDFEVLRQLLGDNVAE
GEEKYGLNWFGKKKARQIALSPSMGTLRPCPEESVDWDTTQNLFIEGDNL
EVLKILQKSYAGKIKVIYIDPPYNTGKEFIYPDKFHDNLDTYLRYTGQKG
EDGLVVSSNNESSGRFHTNWLSM
>Dde_1014 excinuclease ABC, C subunit
MDQIDISCIPTTPGVYLYKDPAGKVVYVGKAKHLRRRVASYFRDIQRHTP
KTRAMLRSAATVETLSTTTEKEALLLEASLIKKHRPRYNILLRDDKQYVL
FQLTRKHHWPRLVLTRKVRKDGSAYFGPFTSGQAARQTWKVIHKVFPLRR
CSDKAFRNRVRPCLYHFMNQCPGPCVLDVDRDGYMQMVRKVEMLLAGRST
ELIDMLRADMQAASDALEFEEAALLRDQLQAVERTVERQAAVLPGVHDMD
AVGLAEAGGGLALSVLFIRRSVLLDKRNFFWSGLTLEEGPEVLLSFLTQY
YGPGSFIPPRILVPWDIRTEDREGAELAPAAVCTDAGLLPDTPLLPDCPE
AAPLPAAPVFAVSAGDVMPSGHDADPAGTADAPVVRGDSAPEQPLPAAVP
PLCAEESASGSALRAVAEMLTELRGGPVRVLPPRNATDNQLVTMATENAR
EDARAEKRPDVAGVIAAKLGMSAPPVRIEAVDVSHTGGSNTRVGVVVFEN
GTPARDQYRTYAFADDEAGGDDTGVLALWAVRRVHSGPPWPDLLLVDGGR
GQLAAVMTALESAGAGGLFAVASIAKARNEETGRADRRAGNLADRIFLPG
RSNPVNFKSGSPELLFLQHVRDTVHDYAIGRHRRARSGAALSGELQRMQG
IGPATARLLWEHFSSLQEMVDAGEKGLAALPGIGKAKAAVIHEGLKRLVG
>Dde_0998 methylated-DNA--protein-cysteinemethyltransferase
MYDVEILVSGPLAMLLEWSGPDGAPDGPACAEPCIARVGLRWSAGLDGSG
LLTGVKLPRPGAEAGDLLPRTLVAFSGSVPDGMHNGAAELSATGSRMLEA
LDSYVQQGRTQWPQVALPMDGLTPFARKVLETLRHEVPAGSTVTYGQLAA
MAGRPAAARGVGQIMARNRWPLVIPCHRVLGSKGAMVGYTGAGVDMKRYL
LQLEGASL
>Dde_2909 ISGsu6, transposase OrfA
MLTKEGVMEIRILRRQGKSIRWIARELEISRNTVRKYLRDSSEPIYERQT
KQPGKLDPFKDYIDERVRQASPHRLPATVIFREIVEQGYAGSERLVRYYV
SGLYPVPAPEPDNRFETAPGIQMQVDWCVFRRGKEPLSAFVATLGFSRLT
YVEFVTDETFASLRKCHENAFAFFQGIPQEVLYDNMKTVVVERDAYGSGK
HRFHSAFRQLATDYGFTPRLCRPYRARTKGKVERFNHYLRNSFYVPLVTK
LANSGLKLDALTANLEVGKWLREVANCRKHKTTGQRPDRRFLEERESLLP
LPKTIRQDSACLLDGTGKLGTWPVEMLQRSPAFYDRFLQGGA
>Dde_1155 hypothetical protein
MPPRTIIPHAAPSVSSDNIMQPGKKMAIVNRVFLLGTVIVWPRRRQEREL
GCGAVTALKISTAQDGLHAAHTVFAPGKLGDWCMRMLTPGSVVHIEGELF
SLCGQQAGSLIRAFAVQLVSTENKDEAPCGQQALFRQPFCLHPAAASLH
>Dde_2752 histone-like DNA-binding protein
MTKAELVQKIAAKAGMNSKTQAESALDATIAVITEALSAGDSVTFTGFGS
FKVAERAARKGRNPRTGEEMTIPASKVVKFTPGKALKDAVK
>Dde_2987 transposase
MESEKNQHVKRTQRDYTMAFKISVVTQVEQGEMTYKQAQKMYGIQGRSTV
LIWLRKHGTLDWSKPVVHSSKSPKAKETPAQQIRRLERELRDERLKNMLL
NEMIDISDREYGTAIRKKFTPELHEIFNKKPK
>Dde_1233 putative transposase B
MVSPSGFYSWLKAPEDALMSRSESLRKAIRFYHQRSSGVYGYRKIHKDII
EETTLRCCRETVRRAMKSDGLRSKVTRKHRYPANIEQIPRAAPNVLARDF
TAATPDQKWTADITYLWTNEGWLYLAVVLDLFSRRVVGWAMSERADAHLA
CRALEAAIQLRRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCSMSRRGN
CWDNAVTESFFSKLKREWVRGKRYRTRNDARQDIFLYLKAFYNRKRRHAF
LGYQSPEAFEQLFYQAKQKQAA
>Dde_0177 DNA polymerase III, delta prime subunit, putative
MSAQGETLCAPHASDIIAPALSSRHDRVRGYLERLAGSVPQVLLLEGGTP
REREAVALWWAARLNCAGTGAPCLSCAVCTQFATRNNRDMFYLDGAQGSI
KIDDVRAVRAVLGEPPRGRYRVVVLAEAQSLGIEAANALLKSLEEPRPGT
SFVLLAPQRERLLPTLVSRSWVLTLAWPDGGACDPAVQEWADALAGFVSG
EEGWFARTGAKGSIDQGTALQLVAFLQRQLALALTGRGASSFARLLVSRL
DTAAMRRLDEALAECQDSLIYNVNPALVLDWLATRLFAWARTSRRA
>Dde_1491 endonuclease III
MKKKERAAAFLALLKKRYPAPATHLDARTPWELLVATVLAAQCTDERVNK
VTPGLFRRWPGPAELAQALQGEVEEVVHSTGFYRNKAKNLIAAADMVTRL
HGGQVPRTMDELTALPGLARKTANIVLWGGYGINEGLAVDTHVKRIAFRM
GFTASDNPVVVEKDLMPLFPRAEWGDVNHRMVWFGRHVCDARKPLCHECE
MFDFCPRKGVQGKKTAARASARKAGV
>Dde_2859 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_3407 ISGsu6, transposase OrfA
MLTKEGVMEIRILRRQGKSIRWIARELEISRNTVRKYLRDSSEPIYERQT
KQPGKLDPFKDYIDERVRQASPHRLPATVIFREIVEQGYAGSERLVRYYV
SGLYPVPAPEPDNRFETAPGIQMQVDWCVFRRGKEPLSAFVATLGFSRLT
YVEFVTDETFASLRKCHENAFAFFQGIPQEVLYDNMKTVVVERDAYGSGK
HRFHSAFRQLATDYGFTPRLCRPYRARTKGKVERFNHYLRNSFYVPLVTK
LANSGLKLDALTANLEVGKWLREVANCRKHKTTGQRPDRRFLEERESLLP
LPKTIRQDSACLLDGTGKLGTWPVEMLQRSPAFYDRFLQGGA
>Dde_2941 ribonuclease HI
MKQVDIFTDGSCLGNPGPGGWAAVLRYAGTQKELGGGFSGTTNNRMEILA
VIEGLEALQEPCTVNLYTDSQYVRNAVEKKWLDSWQRNGWKTAARKPVKN
KDLWLRLLPLLARHTVKFHWVRGHSGHPENELCDTIARGHASRGGLPPDT
QAAG
>Dde_1921 DNA primase-like
MSMGGTDNVREYYRLVTEMDIGDVARELLPGRITQETGQRLMCDCPNHQS
QSRLALHVMLDKQGWYCFGCGVGGDVLQLVEFIQTGSVTAGQSGPMPDSH
RQARDYLAKKAGLPPLSRYGLSQERLAQTEADRAFELRVKDALTSLARLY
HARLKESPEVLDWLKSKYALSEETIDDLLIGYADNASGAVAQLTGGEDGF
SKRELAATGAFRPTSQDGLTPFFERRIVFPYWSRGRVVFMIGRKTPWTPD
VGWEQGKYKKLPVHDEHQRPYVADFINNALLFNEDCLLARPGKVIITEGV
TDCLALMQLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQA
GLKGALQTARTLAEHKIDTRLVTLPLSETQISARQELTERFSLTASVGPK
ELAKLLAGRPAEEIQAAEALLATAKIDVNDYIAAGHTREDFERLLAEAST
PIEFGVRSLPEGAEEEERNRLLEPILGEISEQSPLEQSRLLKLVQERIGG
GVSMATLKEQIRAIQKDRKVEFRNEKKKAKRMSGAMPGSCRARVDEVLID
TELENGAPDYTLAAEAAYDWFNANGAQFFHTLQGEPFMYFDNAIYWMDSP
DRGRKRHYAAMLYKHTGMVPTTGGGRTFFEVLPSLAMIRGQVRDHFSWLH
TDVASYTVYFNLNNPEHEIAKITPDEIRIMKNGGNEDGIILDGSRKMKPL
KFLPDADLEEADRLLVDLLVGNMTCPQGDRFLILSWLSCFLLIDFAGTRP
MTRFEGSAGSGKTTASKITSTLLYGEPQHKKATDAANYTDGSQNPLIVLD
NIEVKQMTEDLTTFMLTSITGIAKEKRKSGTDSETITERTKCLLNTTGIE
PLCGELSEILSRSFVINFDLANQASDCFLESEVISAIQQNRDLIISAIMK
RTSHVLAMIRDGAQKQVMRLLHRTMPTHGKRRCNDYLSLMYLMMLAGSED
HEVTTGLEDLSPLFIEQIHSINDTSQEMARESNPIATALASLFHAYRNAV
ELDEKARYGEDDRANHVVGFIERYQVRFENENTMEPVSAGRLLAALRRVG
REFNLEFEYKKPAQLGRRISNDLDVIRDAGFDIDRQRNAHTKNFEYRISS
KGV
>Dde_3750 putative transposase B
MTRKHRYPANIEQIPRAAPNVLARDFTASTPDQKWTADITYLWTNEGWLY
LAVVLDLFSRRVVGWAMSERADAHLAYQALEAAIQLIRPGLGLLHHSDQG
CQYTSGAFSAVLDQYGIVCSMSRRGNCWDNAVTESFFSKLKREWVRGKRY
RTRNDARQDIFLYLEAFYNRKRRHAFLGYQSPEAFEQLFYQAKQKQAA
>Dde_2323 Holliday junction DNA helicase RuvA
MIAYIEGRVAEVTEQSCVVVTQGGVGYEVHLPSHLLARLPEQGAAVSFYI
HTVVREDALELYGFSGWDERQTFLVLISISKVGAKTALAVLSLYRPDDLR
RIVADDDVTALTRVSGIGKKSAQHILLELKYKLKVESLPASAGLAAGVPG
SVLRDAVQALGNLGYAEEEAAPVLKNILKQDPDLDVSEALRAALKALAKA
R
>Dde_3499 ATP-dependent DNA helicase, UvrD/REP family
MKQFRADLHIHSRFSRATSKKLTARHLAAWAAVKGLDVLGTGDFTHPQWR
EELAAQLIPDDNTGLLRLREADGLDEEISVFAGRPLGGRVQFMLQAEISS
IYKRGGKVRKVHNLVYVPTLEAAESLSRKLEQVGNLASDGRPILGLDSRD
LLEMVLETHPRAFLVPAHIWTPWFSVFGSKSGFDSIEECYGDLSAEIFAL
ETGLSSDPDMNWMWSALDRFRLISNSDAHSGDKLGREANLFSGDVSYDGI
YRALRGEGLGHRFLGTLEFFPEEGKYHMDGHRKCGVIMDPRETAARDGIC
PVCGKPLTVGVLSRVMELADREMPERPAGQPGFISLVPLAEVISEIVGTR
PGTRKVLDFYAGAVSRFGSELGILQDVPEEDLRTFSAPLAEGISRMRRGE
VARQPGCDGEYGVISVFTPRERDEFKNGRMLMDLPLPACGTTRTAEPAAA
ADAVPQDGGGNGPETQAAASGGTAGAALQDADAGVQGVSDEFIFEDDEAG
EQPQGANEAQQRAMDAGPEPVLVLAGPGTGKTRTLVGRIRRLVDNGVSPR
QILAVTFTRRAATEMDGRLLAELGGNAALPRTDTLHALAFEYWHKAYDDA
PVLLSEDGARRVFAEANSGETAQRIREAWERIAVCRERMSVCHTDDAPFL
HRYVKLKESWNLADYTDLLEFWLEQVNNGIYACPYVHVLVDEIQDLSPLQ
LTLVRSLLPENGAGFFGIGDPDQSIYGFRGAHGDVRAFFGAAWPDMQVIK
LTRNYRSSQAILDFSAALLPQDPPLVAMRALPGEIRLFEAPTAEGEASWI
AGQIRSLIGATSHSLADSGATRLKSGGHDDDVSGMAGALAPGDIAVLVRF
KAVIPVIQRTLVRLGIPCSVPEAEAFWVEPRIQMILAAAGRVLGIAYRSE
EETISCPDKVLAKGPLGVSAYLQDMPPFDNLFWQSPEFRRLVKAYDEYGG
WAGLLNWVHLQTELELVRSRSEKVQIMSLHAAKGLEFKAVFLPALEDGIL
PFASAGVLTGSVDKARMRTDTEEERRLLYVGMTRAEQALFLSRAARRMLY
GKELRLRESRFLQGLPLGDLRRSTLVAHQKRKEKQLTLM
>Dde_2908 ATPase
MDSLQHERMVSVCEKLKLCAVPNCYDQLAEAAVRQEKSYIQFLEEVLRAE
EAFRKERSREVMTRMAKFPAPKTIEGYDFSFAAGAPKRLIQELAGLTFLK
RRENVLLLGPSGVGKTHLAIALGLRAAEAGLKVRFTTAADLILQLETAIR
QGRYAQTMKRSVSGPSLLIVDEVGYLPMTGDQANLFFQVVAKRYESGSII
LTSNLSFGEWETVFSGNTALTSAMLDRLLHHSHVIQIKGDSYRLKDKIKS
GVFGKNN
>Dde_1782 conserved hypothetical protein
MKIISGEYGGRTLKTTVGPGYRPAMAKVRKALFSMLEARGVHWSECRVLD
LFAGSGSCGFEALSRGAAEGWFVESNPAAVKVIRSNAELLKVEAARWQVF
HEDVSKFLRVAPARAFDVVFIDPPYGKNFVSPAATALLRNRWLAPEAMIV
AEAEAAVSELPEVDSRLELLVNRTYGQTRILIWGQLTEK
>Dde_0106 DNA topoisomerase I
MGKDLIIVESPAKVKTIKKFLGNKYMVQASVGHIRDLPTKELGVDEENDF
SPDYQVIQGKQKVVSALREAAAKADNVFLAPDPDREGEAIAWHVAEIIAK
ENKNISRIQFNEITARAVREALENPRELNRSLFDAQQARRVLDRLVGYKI
SPILWNKIKRGISAGRVQSVALRLIVDRERERYAFTSEEYWVFRANLAAE
TPPPFKAELFKVDDKKPAIASAEQAQELEKSIEGKAFIVDSVQEKERSRK
PQPPFITSTLQQLASQRLGFSAKRTMSVAQRLYEGLDLGDMGTTALITYM
RTDSVRISDEARDSARELIASLYGKEYCPAKAPVYKTKGSAQDAHEAIRP
VDVTLTPDKIKGLVAPEQYSLYRLIWSRFMASQMAPARFHDTTVLIGCGG
TQWRVKGERLLFPGYMAAAPASAKEANVELPPMQQGQTLELTLLEKEQKF
TQPPARYSEASLVREMEEKGIGRPSTYASIISTIVDRDYTRLEEKHFVPT
DLGFVVCDMLTNHFGTLMDIGFTAQMENSLDKVAEGDLDWVALMKDFTSD
FNPTLASAAKEMKTVKAGLETDIVCSECGKPMAIKFGKAGPFLACTGYPD
CKNTSNFTRDESGTIQLVEREQEELKPVGTCPECGKDLVVKQARTGSRFI
ACTGYPDCKHTEPFSTGVPCPNDGCDGQLVEKSSRRGKIFYSCNRYPQCD
YATWNWPVAEACPQCDSKILTIKSTKARGKHIACPACKYTRALEDEE
>Dde_0714 transposase, putative
MTISSREDLLRSEDAALAYVLRECWPGGGRFCPRCGESRLYDLAGGRSRC
ARCKYTFQDFSGRWINNGGLSPLTWLRLADLFSREPTVHQMAVEAGLSYN
ATYKAVTTMRFAILAHATDAVQLLGPETGLGSFLRNRKLTGDPDSGGRGT
VPVFGILERNGWLFIDLVSGMSAETVFHFNHSFHLKVERAGNLIWTDRYR
HYDALVFCGDDSLPYEYLRRHDRPVAVECGTGFWAFAEKRLKLFKGITPR
RFPLYLKELEFRYNMRHSDIFPVLVRYLCDFVPDMNPEGAAETAAGAARG
HAAGSRG
>Dde_3423 hypothetical protein
MYRVHRWFARRVGSQFRSIITALTLPPDKADAFWDTYLGKTSVHGAVVLD
PFIGGGTSLVESMRCNAWVIGFDIDPVATFITRFELAASRMGDHYPEIEQ
ICNEVAQLITPLHRTMVDGVERDVLHHFWVQVKQCSNCQSDVELHPHFQL
AYSKEKGLQWVFCKDCHAVHELPIERKVLHCSCGKRTTISAGTHGNGIMA
CPNSSTHRRSQRMTLTVPKAPLGGSLPRSIWSEPARTAQGISSASKRPTR
RCGPGC
>Dde_1524 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_2725 Helicase RecD/TraA
MQDPAPQEEMDAQVELVGTLERVVFHNEENGYTVFRLKVQGNRDQVTVVG
HMVEPQAGVALSLKGDWTENPRFGRQFQMSSFDQVLPATLEGIRHYLSSG
LIKGVGEKMAGRIVETFGTGTFNVLDDEPERMLEVEGVGQKLMERIRDGW
AEHRGIRDLIMFLQPHGVSTSYAVRIYRHYGQQALAVVRENPYRLAMDIR
GIGFLTADAVAQKLGFARDCDLRAEAGLLYMLMRLTEDGHVYYPRDELVI
QTSDKLEISAPMVDQAIDNLQLEERIVLDETDSGQAVYLSRYHRYESGIS
HYLRRILHSPKSVSGGDEDALVDEIVAGLDITLAEEQEQAVRTAARSKVM
VLTGGPGTGKTTIINAIIKVFAAMKARILLAAPTGRAAKRMSETSGRESK
TIHRLLEYSPREDGFSRNENNPLACSLLVVDEASMMDTMLMYHLLKAVPL
GATVVFVGDVNQLPSVGPGNVLQDVIRSGVVDVVELVEVFRQAQESEIIC
NAHLINQGEIPSLESSKDRLSDFYFIRQEDPDRVADMVVDLVKNHIPRRF
RLDSINDIQVLTPMHKGTAGAANLNTRLQEALNPKTLVIQRGERQFRLDD
KVMQIRNNYEKDVFNGDIGRICRLDKEERELTVRFDEERNVVYEFSELDE
LVPAYAISVHKSQGSEYPAVVMPVLTQHYVLLQRNLLYTGVTRGKRLVVL
VGSQRALAIAVKNNKMQKRFTYLAQRLARGV
>Dde_1519 primosomal protein N'
MILCGRRCRPLFFVTSGNRQLVMNENLRIVSVSLMAPPYTTLHYRLPEWL
PEEMWCAGLRVAVPLGARGTLRAGVIAACGCAPDTVPQGVELKAVLWPLE
FVPLLGEEYLEMVRQLAVRQMVPPGQILGMLLPAGLRSAGVRLRVRAGGR
PRTLRLRDIAKMADSERHVLASHWSAGRVEVLEPETDEAENDICHVTADP
PWPVRPAARRQTEVLEYLWENGPVSRRRMLHDLGTGAQTPLLTLAERGLV
HVGPLDAEQAEVCGCGIDSACHTEAFENQLFELTDAQQAALRACTDAVES
DSAETRLLFGITGSGKTAVYLELARACLEKGLSVMLLAPEVALACKLYRD
VQLRFPGLPAVLYHGYQSAHEREQQFLNLAAQAREGRPVLIAGTRSALFL
PVASLGAVVLDEEHDASFKQDERLSYQAKEVAWFRVAQSKGALVLGSATP
DVKTFHAVREGHMPGIVLSERVGGGTLPAVELVNIKDNAVKETILAPQTL
TRIKETVTRGEQAVILLNRRGYAPLMYCLDCGSVARCPECEIGLTYHKGR
ERLVCHYCGHSVPFPSPCAKCRGVHYLPMGEGTEKLEETLSTMLPHGKKV
LRLDRDSTRRPGRMEQILAAFAREESSILVGTQMLSKGHHFPSVTLAVVA
DGDIGLNMPDYRATERTFQLLVQAAGRAGRGERPGSVIIQTRDPAHYCWD
YIRNCDYEGFFEKELEARRKRRYPPFVKLALIRLSYPMDWPQGQDRVNAL
ASAVRASGRELGVSVLGPAPAPLPVLRGRRRFQCLLKASDWKTIRMLFHA
ARQGVPASSRLRLSLDLDPVNML
>Dde_2441 conserved hypothetical protein
MAKDGFSFIVCPDGQLLRDRIEGQLAAHSSSHGAWERHVYWGDEGLAASF
WEHLTLQGLFATPKALVVRNAQNLAAADWKKLSESLRQASPTSWAFICLE
VAFERGKAKVPAAVQKTACWKFASGQGWIWESPGLDERSLQGFASAWAQK
RGVRFAPGALPAICAALPADATAARNELEKLALAAGADGVISADTSALGD
HAADLDIFGFIRAVQSGTQHDKVWRKVMGSSSANDGLVFQFLGMLQREAR
MMWQLLSGESVRLPAAVLQSKTRTAQQLRYRGIMRMWDLALEAEKGIKSG
ERSPDQAMEALIGGLLALFAPRRP
>Dde_2596 DNA repair protein RecN
MLELLRIRNLALIEDMELEFAPGMNVLTGETGAGKSFILKALNFLTGDRL
SADIVRAGADKATVEALFALSDGDLIIRRELTAHSGRSRLFINDKLSSQE
TVRDMRSSLIIHTSQHGQQKLLQPSFQAALLDTYMNRPDLLEQRDSLLRS
LRSLTEEKEALHERSRSLADRRELLEFQQQEIAKVDPQPGEEDALLERKR
LLRGQTQSKQLVEDALSCLGGYEGGIIPALGTLESTLRQLAAALPEYEED
ATTVSGFRQTLHDIEGRLRRQPVHDADEEDLEEIEARLYELAQLKRKLKR
SLDEIVDLQREIEENLSFLDSCGLDLKRIARQEQETREKLAALLEKLNPA
RRKAGEKLAADIVAELKGLGFSDQVQVRFTHTPHKLAENCIEEKAGMLWL
PNPGQPPQPLDKIASGGELSRFLLAVVGLMAREESATLIFDEVDSGVGGL
TLNSVAERLRSLASQRQMLLITHWPQLAAKAQRHFHVRKEVHDDATYTYC
TALDAKGISNELSRMAGGGEQGEAFAGNLLTPHLQHR
>Dde_2093 DNA ligase, NAD-dependent
MDRRGAPVKQDSAKVEQRMEELRTLLEYHGHRYYVMDEPEISDAEYDALF
RELVRLEEEHPEHIHPGSPTHKVGGQILDGLKPREHSLRMYSLDNAFGIE
EFREFVERVVRLEPDAPLEFWVDPKMDGLAMELVYENGVFLLAVTRGDGS
MGEDVTHTMRTVRNVRMRLNPEIEAPVRLEVRGEVIITRADFEALNARQQ
QKGGKLFANPRNAAAGSVRQLDSSVAAARPLRFMAYGVGQVVWADGRQRW
RTQYDIMRGLQELGFAVPSQGRLCAAPADVEAAFTELSAARHELPFEIDG
VVAKLNDLDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGV
MTPVAELEPVTVGGVTVSSATLHNEDEIRAKGLMLGDVVIVQRAGDVIPE
VVRAVPEERTGAEREYVFPAVCPVCGSAAVRGEGEAAWRCTNMQCPAVRK
QAIIHFVSKAGLDIDGVGRKWIEQLVDSGRVVSPADLFRITREDLLGMER
MGEKLASNFIEAFDSARHESTLQRFICALGIRHVGEQTARTLAARFGNMD
ELMRADQETLQSLRDIGGEVAGSIRAFFANGQNRELLQQFKNLGLWPEEQ
QPAGDSTPVTPLAGKKILFTGSLVRMTRSEAKAMAEKAGAAVMSGVSARL
DILVAGDKPGSKLEKARSLGITVLTEDEFIRQASESEEISGQAADDYENS
LLRVQ
>Dde_2446 ATP-dependent DNA helicase RecQ
MLDTAREILISTYGFRDFQGLQKDIIEHTASGGDALVLMPTGGGKSLCYQ
IPSIMRQGTGIVISPLIALMQDQVDSLTQMGVRAAFLNSSLSPEKQREVE
ARLLSGMLDLVYVAPERLVQPAFLGLLERITPALFAIDEAHCVSQWGHDF
RPEYTRLTILHEQFPHVPRIALTATADGPTRRDIIRHLDLQDATVFSTGF
DRPNISYTIQPKDKPLEQLLHFIRTRHKGQSGIVYRLSRKKVEETAAWLC
AKGIEALPYHAGLNAIQRHHNQERFMREDGLVMVATVAFGMGVDKPDVRF
VAHLEPPKSLEAYHQETGRAGRDGLPADAWMTYGLADVVQLRRMLGQGEE
DSPRRMVELRKLDAMLAFCETTECRRKVLLGYFGEHDREPCGNCDTCQFP
VETWDGTVAAQKALSAVYRTGQRFGAAHLTDILTGKLTDRIRSHGHNDLK
TFGCGKELGASQWKGVFRQLACLGLLATDADGHGGLRLTPESWQVLRGER
MLSFRRDILGRSATRALAKTQADAALQNALNTEESRQLWDTLRSLRGRLA
QERDVPPYAVFADRALLEMVCFRPRTPDDLQCIHGVGKAKLSMFGQEFLD
ALLSHEAAWGRPDDLPALPERRPATAAKKENGLTDTIRETLQLFNKLQDM
QAVAEARALKPATICNHLVRCIRHGELTTEQVVPLPAHELAEIRGVLGET
ASLGGVTAAHGRLKGRYDFETLRLVQAELFIRRGDEEDW
>Dde_0003 DNA gyrase, B subunit
MTNETQKQSYDAANITVLEGLSAVRMRPAMYIGSTDSRGLHHLVYEVVDN
SIDEAMAGYCDKVTVKLHLDNSVTVIDNGRGIPVDIHPKEGRPAVEVVMT
VLHAGGKFDNDSYKVSGGLHGVGVSCVNALSEYLEVTVRRDGYKYHHRFE
RGVPVKELERVGETDLRGTTIRFRPDEEIFETNQFSFDILKKRFEELAYL
NPGLEVEFIDERTGDTASFHYEGGIREFVKNLNSGEGGVHSIIFASGESD
NVMVDFALQYNAGYKENMLTFANNIRTKEGGTHLAGFKTALTRAINNYIQ
NSDLPKKLKVKLSGDDVREGLTGVVSVKLPNPQFEGQTKTKLGNSEVAGI
VSGLVYENLNTYFGENPKDAKLIIEKAVDAARARDAARKAKDLVRRKGAL
SDNALPGKLADCQSKDPSESELFIVEGDSAGGSAKQGRNPSTQAILPLRG
KILNVEKTRFDKMLANKEVKALITAMGAGIGEEDIDYGKLRYHKIVIMTD
ADVDGAHIRTLLLTFFYRQYPELIDRGHLYIAQPPLFRVYNSKFERFIKD
ETELNTYLLERIAKDVVIEAHNGMEFRETQILDLLKAIRFINARIADVEN
VGIGRNLFLAFLEYGEKLSPQFFEAPEFNGFGTYLQEKGYSVQTSVDESG
LERRVYLEFEDSNGHKTRIGNEFFNSKMYKQPYDSMADMRRICGGFSFVV
DRKGERTEVENIFVLLDHVLQEARKGINIQRYKGLGEMDAEQLWVTTMNP
ENRVLLQVQVDDAEEANEIFEQLMGDRVEPRREFIVRNALSVQELDI
>Dde_0486 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_2872 transposase-like
MCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGSPMI
TEDLRAEDAFRHVSRSRVARHMREMGLRCQTMKKFVVTTDSSHSEPVAPN
VLNRRFSASAPNVTWVSDITYIKIGRTWHYLTVFIDLYSRLVVGWDLSAS
LERHSVIHAFRKAVARRRPSKGLLVHSDRGIQYASRDFRKELHRHGCIQS
MSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAELALFHYIEAYYNR
RRRHSSNGWMSPAAFENFNQEYKKGPFAF
>Dde_0779 DEAD/DEAH box helicase-like
MTTPYHAKYFAHDLTIQKPLDGVERLSRSLFDACVDLNPHQIDAALFAFR
SPLSKGVILADEVGLGKTIEAGLLLCQYWAERKRNIIIVCPASVVIDARA
YRLEKKNGNITPFDQNCVIITSLHYAARMKEELRLTKWDLVVIDEAHKLR
NAYRPSNKMGQGLRWAFEDCFKVLLTATPLQNSLLELYGLSTFIDDYMFG
DISSFRSQFVNSGGDLPGLRDRMAPFCKRTLRKDVLEYIQYTERKPIAFR
FRSTDEEQRLYDAVTEFLKREETYSFPSQQRQLITLIMRKLLASSSQALL
GTLQTMRKRLLDLKEGIEAERSLAEELIDLEEIEDDLLEEDELYDPLLSE
DAEAPDDGKLDLEKLAEEITELDKYITWAESIRVDSKSKTLLKGLETGFA
EMQKMGARRRALIFTESRRTQDYLKSFLEANGYANKVIAFNGTNTAQETR
AIYDSWLDKNQGTGRISGSRPIDVRTALVEHFRDNAQIMIATEAAAEGVN
LQFCSLIVNYDLPWNPQRIEQRIGRCHRYGQKHDVVVVNFLNERNAADQR
VYELLEHKFNLFNGVFGASDAVLGSIESGVDFEKRILGIYQSCRTTEEIE
KAFAALQAELEEQINTKMEKTKQLLLDNFDEDVHTRLKVQLDDAHRQNGM
PRMLGRKIKGYIMEV
>Dde_3341 conserved hypothetical protein
MKKSRFTETQIFSILKEGEAGIKVKDICRAHGISDATYYSWKSKYGGMQA
SDLKRMKNMEAELTQLKRMYADMALENRALKDLIEKKL
>Dde_0869 ISPsy11, transposase OrfB
MAACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRK
LYSLLCDAISAKGIKLGRDALFALLRKEHMLIRHKRNYTKTTNSKHWLKK
HPNLFKDIRPSSPEQVFVSDITYLSTREQTYYLTLVTDAYSRKIMGHSLN
RDLGAEGVSKALEKAARNRLTTKEAIHHSDRGLQYASTIYQDKLSKAGML
CSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAVVDESIGIYNT
ERPHLSLNMKTPEYVHKMGCEVALTAQT
>Dde_1648 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_2480 DEAD/DEAH box helicase-like
MIFSCRRFQRAHSALRCGGCPEKRTADVVRCVRRPDGVCCRSSAHELDHV
KTGAAVSFARFSLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLA
ATGTGKTAAFVLPLLHRLLLQGESARGTLRALVVAPTRELVAQIHEEVKT
LARFCRLRSATVYGGVGMHAQTVQLRTGVDIVLACPGRLLDHVRRGHADL
SHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQTMLFSATMPAPLREL
AEECLRQPVRIELDTCAIAPTVRHSLCPVPKHLKTPLLKYVLRAFARDSV
LVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFRV
MVATDIAARGIDVSQVGYVINYDFPPSVEACVHRAGRTGRASNSGVALTF
VTQEDEPQVRTLERVLGGALSRWHAEGFDYSALQRTEAARPARLRREPRP
QRVQRVRRLLEDAAREQMAAARKVASHAGHGGDMHQDGQPVKPAFRIVPR
EAPAPLKPKPGQYVMKPQPPVIIRKRRGGA
>Dde_1745 transposase-like
MSSPKRRTYDSEFKQNAVLLTEDPSRTVTEVAESLGVAKDLLYRWRREFA
AQGKVAFSGRGNPALTDEQRRIRELEKKLKNAELERDILKKALAIFSSAP
K
>Dde_3406 ATPase
MDSLQHERMVSVCEKLKLCAVPNCYDQLAEAAVRQEKSYIQFLEEVLRAE
EAFRKERSREVMTRMAKFPAPKTIEGYDFSFAAGAPKRLIQELAGLTFLK
RRENVLLLGPSGVGKTHLAIALGLRAAEAGLKVRFTTAADLILQLETAIR
QGRYAQTMKRSVSGPSLLIVDEVGYLPMTGDQANLFFQVVAKRYESGSII
LTSNLSFGEWETVFSGNTALTSAMLDRLLHHSHVIQIKGDSYRLKDKIKS
GVFGKNN
>Dde_0496 hypothetical protein
MISSLTNAPCGAGLVIQRIADPSLERRLARMGLFPSSVITRLDEEVALHT
VRVRGPRGEVVLSGGMGGKVIVHLEDGRMLPLPELHVGDKGHIEAVTAGE
SLLAALAALGLKNDDEIELLRRLPPMEYVTVVEGRGRIRLPEGMAAKILG
VMGDIECQFVNAQAGSPFLVRRILGGERAQKTIALLDIREGGTLRLESVE
KAPSYRMSSGDRIIVSSHEGLRLFLRVDQADLIIVNSESGEA
>Dde_3099 methylated-DNA--protein-cysteinemethyltransferase
MILHNKNTNQHKTDSVGTILGSRRAGVWSTLTAPCLRCTGQSRRQRAAFG
LRPSSPPSADTRETASRRQCGAFSFALLQYTRRQRRPDALCTAYRIAPLE
RTQFTVEVIRQIKSIPAGYVSTYGMIAAMAGNPRAARQVARVLHSCSARD
ALPWYRVINAGGNISLPRGGGYERQKALLQREGIVFDETDRVDLQRFMWT
MPA
>Dde_2026 conserved hypothetical protein
MKLYVIEDLQPEDISVITGRLKAMELEAGLEDLYWLPVPPEHLTPVQKEH
LPRCGPYAMALEISGDALRMELLVRARNMLRCECIAYASPALQSHMTGYL
DSLLSENGIAI
>Dde_1744 transposase-like
MKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGS
PMITEDLRAEDAFRHVSRSRVARHMREMGLRCQTMKKFVVTTDSSHSEPV
APNVLNRRFSASAPNVTWVSDITYIKIGRTWHYLTVFIDLYSRLVVGWDL
SASLERHSVIHAFRKAVARRRPSKGLLVHSDRGIQYASRDFRKELHRHGC
IQSMSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAELALFHYIEAY
YNRRRRHSSNGWMSPAAFENFNQEYKKVA
>Dde_3592 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_2715 single-stranded-DNA-specific exonuclease RecJ
MAKNWIPRGTEPLPGETALWAERLGVSELLVQLLWTRGLHTPEDMDVYLS
PGLRHLAPPDCWPGLAQAAAVLDDGLAQGLPFAVWGDYDVDGVTSVALVK
SFLAAHGIAARHHIPNRFEEGYGMNVAWVERLAQEGVRLLLTVDCGISDH
ESVARARELGMTVVVSDHHLPGESLPQAHAICNPRLADCPCPALAGVGVA
FFLMAALNSRLAQRTGVKADIRPLLDLVALGTIADVVDLSGQNRILVKNG
LLVMTEAGRPGIAALKEVSGYSVSASLGAGQVAFGLAPRINAAGRLGEAD
TALSLLLAPDYAAAAPLAARLDAMNQERKEEEERILEEAREQAAAQQDRM
GLVLYAPHWHAGVIGIVASRIVEEFYRPTLILCDEGGVVKGSGRSTAEFH
LHEGLTRCADLLLGFGGHRQAAGMSLDHAGVDALRERFHAVVVESCGPHP
LTASLKVDAELGFARASDFAMLKELELLQPFGMGNAEPTFSSPVLEVRGN
RRFGKNHMQLELLDPSCGVTLRAKAWRQADNLPRDMRGRKMRLAYTPRID
RYNGLASVDLRIKDWELF
>Dde_2871 transposase
MLDLLNLPGIKPVDMRHESKGLVIVAEPETVEVPLCGGCNTLMHKHGTRK
NKFMDTPLYMEPVRLEVQRPRFRCESCGKMSMPELSFLDDKRRATKRLVD
VIRQQCLGTTFHALAEQTGVAVNTVKNIAHDLINELSQTVRYETPVIMGI
DEVNLAGGYRCVITNLATNNVFDMLEHRTQEHLKPFFKALPDADKVEWVC
TDMWRPFKRSFAQYLPNAKLVIDKFHVVKMASEALEVERKNYQAQLSKED
RIYVKKSIRWLTLKRPGNLTPAEQKALEVVKQAIPELAVAYDFKEAFFCI
YDELDKQNAQNAFEAWENSLPDQGLVAFKKLAKTVHNHYDDIFAYWDAPF
SITNGYTEGLNGLIKMSNRLGRGYGYPIIRAKTLYSKEARKVGSGIRAGH
GKVEYGPHIPTLLKQAESGELD
>Dde_3450 DNA polymerase I
MRSTQTPAVYPRLLYHYALADCLHSLQDRGKIVTIPVLLAAAPAVPARQS
GTKRCRRTAKTSSRITMSLKERLGLDKEPVYLIDGSAFIFRGFYAFQNMQ
RSDGLPTNALFIVLRILLKLLREEQPAYAAFFMDGKGPTFRHALYDQYKA
NRSATPEPLVQQLDPIRRGVRSLGIPLEVSDGCEADDCIASLAAKFKSER
PVIIVGADKDLKQCIDDNVYLWDPGAKQEKLLDLAGFTEETGLSPSQWPD
FQAVIGDSSDNIPGVPGVGPKTAAQIFAEFPTLEAIQENEKALKPGVQKK
FAGQWDNIYLYRRLTTLDTGRCTSLALKDMTVQSVDADNAAAFLREFELR
TLLRELPQSVPVRPARSGAAAMQQASLFGEPQAAPQIPSFSSADQLPAVS
GTVALVPAEKGIAVAFNGNEYLYTGKPEDLAAHMAQTGAISRIIAPDVKA
LYRSHTSWRAIEVHRWFDLGLAAYLLNPEERDYSWTSLARRAEEFGIDAQ
TPATLALTLAQDAAARLEGVGLSALMEELEMPLIPVLADMELRGIRINRA
EFSGFLAEVQKELDRLTQEVYAVAGGQFNIRSSQQLGELLFGTLGLKAGS
KTKGGQASTSQAVLEKLAGKHPVIDTILEYRKLEKLRSTYLEPLPRLAQE
NDRIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNKL
VAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTP
DQRRNAKTINFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLKEF
YDNVEQSAREHGFVTTLAGRRRLLPEIHSDNNQLRSQARRQAINTVVQGS
AADIIKIAMLKAAADETLQQLNAALILQVHDELLLEAPQDAAEAAAKRLA
DIMSSVRPGGAALDVPLAVDYGIGDNWGQAH
>Dde_3464 DNA mismatch repair protein MutL
MTQDNTPQRKRIQLLPDALRNQIAAGEVVERPSSVVKELVENSLDAGART
VEVAIEDGGRSLITVRDDGDGIDAAELELAVTRHATSKVTTFDELMRIAS
YGFRGEALPSIASVSDFRMTSAPAQRTAADTAPEASCIHVRHGSIISHGP
AALSRGTLVEVRDLFMNVPARLKFLKTTATESKRCQELFCRLALARPDAG
FSLSSGGREVFRFPAGQTWRERLAVLWPPSITESMVEVPPLCSRAHDGTV
PDVQVRGLCGDPRQSQPRADKMLFYVNGRAVTDKLLMRAVRDAYSGRMLG
REYPQVLLFIELDPEMVDVNVHPAKSEVRFREERHVFSAVRRAVEAALQQ
LSATGTPDSPDTAGVADIPGHAASGAAGLRLTPDSPATPRAAARPLGFWG
EADAAPIVPRAPRDHEDDEVTLRHMPQPSSADGRTDRTEHTDSAEAPDAH
LPHRDDGVRIDFMAGGPSRAAGHTDAAVAEQPDAEYGHAAPHSTPQPAGA
PADPAHGGVTVGEYTYLGQIADTYLVVRRKGSTLLLLDQHAVHERVLYER
IRRDATQGQTQLLAFPAEMPLHNAEAERLASVWEKLAAMGFALETHGPSL
RIRGIPSTLDQRGATEFLREVLADRKGRLPDMWVMMSCRSAIKAGQRLTP
DEAAGLIAQWLEVPDREFCPHGRPAVLRFTPADLEKMFKRTG
>Dde_1922 helicase, RecD/TraA family
MFARENQPVVLLGSWATHPKYGRQFKVDGMEHDLELDPEGLIHYLANHPE
IKGIGPAKARLIVESFGDAFEETLLNDPERIALKARLPLDAARRLRDEWL
KNRSVNAVMAWLSAFGLTHHQVTTLVERLGGNCLDILKEDPYILIREIRG
FGFKKVDKIARKLGTPKDHTPRIRAGLNFCVREALDNGHCWIEYEDLVDQ
ANLLLVMDALDSRVRIESALDALIEEQALACDSHGGRFVVALPEIVRMER
ELALLFGQAETPNPHFQSVKKLDALIRRCASTLNEKQLDAVRSALQHSIS
LISGGAGSGKSYTISVINTICEESDLEVVLAAPTGKAAKRLEEVSGRSGT
TIHRLLGYDGKGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSR
TTVLLVGDHNQLPPVGPGNILRDLIQTRAIPTVILDKVVRQAGVLKENCT
AVLKGEVRKTSEASVSGCRDWYLVDQFTDPMAARSFLLELFQERLDTLGF
DIIKDVQVLTPTHKGPLGTKELNEELQRLIQRKLWNTEVPPVAMGRRAPF
LKHDKVIQTRNNYDLNVMNGAIGYVVDVLANGTLVIDFDGMPVELEKGSP
DLQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNLLYTGVTRARR
TAIVLGDHWGIQNCAKRCQVDDRRTFLPLFLDAAQHADADSARVAEAE
>Dde_3761 ISSod2, transposase OrfA
MKKSRYTDSQILNILKQAENGVPVPELCREHGMSSATFYKWRAKVGGMDA
SLVARMKEPERENKLLKRMYAEEKMKAEVVAEALAKNW
>Dde_1607 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_3356 histone-like DNA-binding protein
MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLT
GFGAFKVTRRTARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN
>Dde_2899 ISSod2, transposase OrfA
MKKSRYTDSQILTTLKQAENGIPVPELCREHGMSSATFYKWRAKFGGMDA
SLMARMKELERENKLLKRMYAEEKMKAKVVAEALAKNW
>Dde_1998 ATPase
MNASRLPSLLFFGPPGCGKSTIALLLARNTGQKYIRISAPEAGLQQLRKS
LAGVRILVLDELHRFSKAQQDFFLPVLESGEVTLLASTTENPSFSVTRQL
LSRMHVLRLKPLAHSDLLTLARRGAEAQGAALKDDVCEMLATVAHGDART
LLNLVEYVAGLPEEKQTPEAVKAALPELVMRHDKDGDSHYEIASALIKSI
RGSDPDAALYYLACLLEGGEDPRFICRRLILSASEDIGLADPQALPMAVS
CQQAVEFVGMPEGFIPLAETAVYLALAPKSNSTYAAYLNASKEIRLNGPK
PVPMHLRNPSSKLQKDWGYGKGYLYPHNYPEGWVEQTYLPDGLQERAFYH
PRENGHEQRMAAWWRRLRRPRRTGK
>Dde_1585 Site-specific recombinase XerD-like
MSWTGGAPDFNLPPLPDTAEMYMGYLALEKGYSSATVRGYACDLAQFEDF
LQRRDMSLDTPADIVPRTIHDFLADLHRQHVGKSSMGRKLSALRGFFRYL
ARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDTRTQAASRAQVHV
RQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTGKG
SKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQA
LRIIEDLCRAAGLPQAVSPHALRHSFATHLLEAGADMRSVQELLGHERLT
TTQRYTHLTLRKIVEVYDRAHPGSKAGKGGSK
>Dde_2988 ISPsy11, transposase OrfB
MAACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRK
LYSLLCDAISAKGIKLGRDALFALLRKEHMLIRHKRNYTKTTNSKHWLKK
HPNLFKDIRPSSPEQVFVSDITYLSTREQTYYLTLVTDAYSRKIMGHSLN
RDLGAEGVSKALEKAARNRLTTKEAIHHSDRGLQYASTIYQDKLSKAGML
CSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAVVDESIGIYNT
ERPHLSLNMKTPEYVHKMGCEVALTAQT
>Dde_1587 conserved hypothetical protein
MTFSDRTIPPVAIIPWQNDFLQALLRYVTEHTDGETGRAVIVFPHSRPRR
YLLDLFRTSPDIPRPCLIPQILPVSEFLSAVSTAGSTAQPRTIELLDRVG
LLLECVRELGIGEQPPSAGEMPASATFTPRGPLSALPLTDARRFFPWGMR
LAALLEDFYNQGLEPDDYHYMEGDVVDFAARLLEQLGSIHRLYTGRLDAE
NWTTPGYDAFRAAHAADSLPAMFAGKIIFIAGFYGLTGVEKKVFTTLRSA
CGAHMVLHTDPALAAKKTVHWSCKEHESLLEQWQAGTVLLEEPEDRHATI
EYHEGFDLHSQLDALQKKLTQTDSLEQSAVVLPDSGMLMPLLHHLPRKDV
NISMGYPLGKSPLAQLLDTIMDLQEGRTPSGYPWRRIIDLIRHPYLKMLS
LHNARPLQQVFRHMERSVRQGARHTDPRNLQIEYLAEADATGAGTAAVDD
EALAALVSRIFDLTLTRWERVSTPQQLAGVLADMCTLLLEQGADMWKRFP
VDAECMYRLMHRVIPALRESTVRDAELDSGLLYTILREVMNAERVPFEAE
PLTGLQVMGMLEARLLRFRRVYVLDATENNLPGVPANDPLLPENLRGLLG
LPDIRHRERVSAYNFFRLIKGAREVTLLYQAGTTQSGLFDEKKQRSRFLE
ELIWQDEQRTGRLLQAGTPPLHAVSYSIPAISLHDAVIPRSATIDDRIRE
LLARPVSATMLDSYLRCPVSFFYERLCRIAPAEQVNEGDDHLGVGDLMHA
VLQEFFTPYAGQEITRGQLDAKALTGLFHQRLHSSGLQDTLPYDSYCMLS
VAGPERLTRFLNNQPETTRILKLEEALEAKVEAGGSTYWIAGRLDRVDER
DGCDIVLDYKTGTARKPAQDVWKSEDLWEKIARWHPAAEDDPLPLLSDAL
RSIQLPFYLYLYATACGRPAGNAGWIALRDSGKEEMLFTAAGRDEVQHAA
AHQIPAIIGFLLQHMTTSSCFRPRRGKHCDWCFYANLCTFRLEGPTG
>Dde_1976 DNA mismatch repair protein MutS
MTSHSPKLTPMFEQYMNIKAEYPDALLFYRMGDFYELFFEDAEVAARELQ
IALTCRNPNAENKVPMCGVPHHSARSYISQLVDKGYKVAICEQMEDPREA
KGLVKRGVIRVLTSGTALEDENLSPKAHTYLGALCWDKSEGAGGFAWVDF
STGEWSGLQSRKEQELWQWVQKMAPRELLLADTLTPPASLELTETQFSKV
PERAYFDYKRSAEKIMSAQQVAELGALGLENRKELVRACGALLTYLSQTQ
KQDLNHLCQFKPLNLNRHLLLDEITERNLELFRRLDGRKGKGTLWHVLDH
TVTPMGGRLLQERLKHPWREQAPIDETQEAVSHFFAHNTLRRQLREALDT
VYDIERLSTRIFLNRATPRDYVALRQSLKALPAVRELLEAPQTGDGRYAT
PEEQLGAALPPFLHRMLKSWDDLADYHDLLEKALVDNPPHVITEGGLFRQ
GFHPALDELMDLSEHGASKLHDLLAEVQQTTGISKIKLGNNRVFGYYFEV
PKSVSEELPDTFVRRQTLANAERYTSERLKELEEKLFSAADKRKTMELKL
FQQLREHVAQARPRVLFMADLLATLDHWQGLAEAARHWNWVRPVLHDGQD
IVIREGRHPVVEAVQGPAGFIPNDLRIDDQRRLLLITGPNMAGKSTVLRQ
AAIICILAQIGSFVPAREARIGLCDRIFSRVGASDNLAQGQSTFMVEMME
TARILRQATRRSLVILDEIGRGTSTFDGLALAWAVVEELMKKQQAGIRTL
FATHYHELTSLEGTIPGVHNMNIAIKEWGGEIVFLRRLVPGPSDRSYGVE
VAKLAGVPQNVVQRARQILELLEQKSKADGTRRPASYHEAQPLLPGMPEP
PSTASAEPPQTVTPPEPPVLTALRDLDTDNLTPLEALTVLTEWKTLWGAG
KNEC
>Dde_0068 recombination protein RecR
MPEPLKALVDRLARLPGLGPKSALRMAMTLLKWPESETRGLGAAIAQLRD
NLHLCRRCGSLTDVDPCAICTDATRGRDTLCLVSEWDSLLAMEDGGFYKG
QYMILGGLLAPLDNVNPESLELERLRRRLAEGEVREIILGLGTTLEAENT
ASYIRSMVNRDFPQVRVTRLAQGIPLGSEVKFIDKETLRQSLQFRQDL
>Dde_1492 conserved hypothetical protein
MLKNTFCHLPGVGAGTERSLWDKGVLTWEDALDAPQKLLGKNGDRLRRGA
EESLARLESADAAWFGGSLPANMQWRLFDPFRCNAAYVDIETTGLSWPSA
HVTTIALYDGRQVRTYVHGRNLHDFAEDMAAYDLLITFNGKCFDVPFLER
ALDMRMTAGHVDLRYVFRALGLGGGLKHIEHCLGFDRGELEGVDGYMAVL
LWNLFRRTGDERVLETLLAYNAEDVLTLEPLMYHAYNRHLAGTPFSQTAA
LSVPPVAPNPFRASPHALREARSGAMF
>Dde_1674 transposase
MESEKNQHVKRTQRDYTMAFKISVVTQVEQGEMTYKQAQKMYGIQGRSTV
LIWLRKHGTLDWSKPVVHSSKSPKAKETPAQQIRRLERELRDERLKNMLL
NEMIDISDREYGTAIRKKFTPELHEIFNKKPK
>Dde_2202 exodeoxyribonuclease VII, small subunit
MTGTGTTGFEEQLARLQEIVRRLETGELPLEEGVALYKEGLELAAGCRKR
LQTARNDIKVFSDGVLKDFDMPEDSPAADD
>Dde_1435 HhH-GPD
MNRETLLMQMFGAMLARLGPSGWWPAGSPFEVAAGAVLTQNASWTNAGQA
LQRMRSADMLSESGVAAAAPDTLEELVRPAGFYRQKAATLRRLVQFLYEE
ADGDIRNLAGTSMDSLRARLLDIKGIGPETADSILLYALDMPSFVVDAYT
RRICVRHGLLPEDVQYAEMREFFMDVLPADVSVYNEYHALLVRVAKEWCR
KTHPRCDSCPLRQFLEYEVVC
>Dde_3364 ISxcd1 transposase
MAKAAVNERKVSIRLACVAFSISQTCYRYESKFSDENDLIAEWLIRLTHN
QRNWGFGLCFLHLRNVQRFKWNHKRVYRIYCELELNMRIKPKKRIIREKP
EPLAQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDFNREGLTIEADFSL
PAERVIRTLEQVIEWRGKPESIRCDNGPEYISKKLLLWAANQGIRIEHIQ
PGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHATNWLWTYNNERPN
MGIGGITPAQKLRMAA
>Dde_0870 transposase
MESEKNQHVKRTQRDYTMAFKISVVTQVEQGEMTYKQAQKMYGIQGRSTV
LIWLRKHGTLDWSKPVVHSSKSPKAKETPAQQIRRLERELRDERLKNMLL
NEMIDISDREYGTAIRKKFTPELHEIFNKKPK
>Dde_0179 deoxyribodipyrimidine photolyase
MHSGRLSYSTVPPQEARGHAAGAPVLYWMHREMRARDNWALLHAQQCAAA
GGAPLAVVFCLVPQFIDAGLRHFHFMLQGLEETARILEELGIPLFLLRGT
PPEEVVRFAQAHGASRVVTDFDTLRIKRQWIRSAVEAARQLDIAVDVVDS
RNVVPCLRASDKREYAARTIRPKIHRLLDEYLDPLPALQPAAVPWKGAYQ
RPDWQAALDSLQADASVQPAGWLPPGENAALAELTAFIRVRMHRYAAERN
NPLMPVLSHLSPYLHFGMLSAQRAVLEVMQAQGTAAGGTYGEGAAAFVEE
LVVRRELADNFCWYEPSYDSVEAFPDWALKTLDRHRADRRPYLYDEQQLE
KARTHDPLWNAAQQEMVLTGKMHGYMRMYWAKKILEWTESPEEALRIVIR
QNDRWSLDGRDSNGYAGAAWSVGGVHDRPWREREVFGTIRFMSYNGARSK
FDVDGYVAAVAALENHPVPAPVSRCGGRRKPAQGLLL
>Dde_3621 DNA-directed DNA polymerase
MHIDMDAFFASVEQLDNAALRGRPVVVGGGKRGVVAAASYEARRYGIRSA
MPSGQARRLCPHAVFVKGRMHRYKEISAQVMQVLHEFSPLVEQASVDEAY
LDATGSARLFGPPEEMARRIRAAVREAVSLTCSVGVAPVKFLAKIASDVN
KPDGLFVLQPDEVAGFLAVLPVGDIPGVGRHFAGQLQALGVRTAGDVLRY
PETFWQRRFGKGGLGLFARAQGIDPRVVEPYTQAKSESAENTFEEDTDDR
ELLKTWLLKQAERVGRNQRRMGLSGRTVTLKVKFADFRTVTRSRTLAAPT
SSTRVIYDTAAALLDEMGLPQKVRLIGVGLSHYAEGPQQLALPLCSPAAV
RDEKSEQLEKTMDAVRDRFGSAAIVRGRLFGFGKD
>Dde_1899 hypothetical protein
MELIKFRASNRHTFSAPSPTKSSNWSNSMGVKRTGDWDKARARLNAGMGP
RLASALRQATIRNALFLAREIQRGIRSQSPGGQPFSKLAESTIARKGSSK
ALIDTGFLINAITQRIMADKAFVGLLRGTVNQDGEDIVNIGAVMEYGATI
KHPNGAIIIIPPRPFLHPVMEKYRDQIAENFIKAIRNEGF
>Dde_0517 histone-like DNA-binding protein
MSGKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLIS
GFGKFEAYDKKARKGRNPQTDETITLPPRKVVVFRLSRKFRAELNGE
>Dde_0628 DNA polymerase III, epsilon subunit
MGIRSLLRSLRHRPPLHPALQRNRSAFADFNQDIPLEDCEFAVTDMEMTG
LDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARPATLIHRITPA
QLQHSPALAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHLGGAPAT
PCVDTMRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDAL
EDALQTAYLFLYLVRKLKGGGITTLRGLHAAGRSWRWYL
>Dde_2373 recA protein
MSKKTSLTPEEMRREALNTALSTIERKYGSGSVMKLSDDAHTNVAVIPSG
SIGLDLALGVGGIPRGRVTEIYGPESSGKTTLALHMIAECQKQGGTAAFI
DAEHALDINYARRLGVKTDEMLISQPDYGEQALDIADMLVRSNAVDVVVI
DSVAALIPQSELEGNMGETQVGSQARLMSHAMRKLTGTIHKSRTSVIFIN
QIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRKIQTLKDKEEVYGNRV
RVKIVKNKVAPPFREAQFDILYGQGVSRTGELIDLGVETGIVEKSGAWYA
FGSERLGQGKENVRQMLQENTTLREAIEQKLLEHLGMREPVQSADEAEKQ
D
>Dde_2354 nuclease (SNase-like)
MSISMRVLHIAAQLCLWCLAAAAHAGPLQSPAAAVMPYAPAAARVVRVVD
GDTLIVDIDTYPPVFGQAIPVRLAGCDTPELNDPDPRLRALAVAAREFVR
QVLSDAPVELHDIGRGKYFRIIARVRVAGQDLSTLLLQAGLAVPYAGGKR
PDHSVLLTAATAAP
>Dde_0212 A/G-specific adenine glycosylase
MIHDDDKERFVQALLGWFSVNMRDLPWRRDYTPYRVWVSEIMLQQTQMER
GVTYFNRWMGRFPDVAAVARAAENDVLKAWEGLGYYSRARNLHRAARLIM
QEHGGVFPCRYEDIRALPGVGDYTAGAIASIAFQQDAVAVDANVERVFSR
LFDIDTPIKEKENAAFVRHTAQSLLPRGKARLFNQALMELGALVCGKKAR
CPLCPVQQWCEAFRLGIVQERPVLTARKSIVPIEVATGFLVHQGRIFIQK
RPEMGVWAGFWEFPGGCIEQGETAEEAVRREFMEETEFDVVPREKIAVVR
HGYTTYRATLHCYLLELRGGSDVPVLHAATESRWVRFAELDGYTLPAGHR
KLVDMMAGSLQWQWLQGG
>Dde_1149 conserved hypothetical protein
MFTFTPAGVCAKQMQFDIDAGGKLADVRFTGGCPGNLEAISRLLEGMEAG
EAVSRLTGITCGKKPTSCPDQLARAVRKVLDGEGDSMRARPAGAASLGFG
LGNPFA
>Dde_0741 putative transposase protein
MKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNRYRKEGAVG
LVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELFASRYGLEL
SAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMDASPFDWLG
DGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLERHGVPRAIY
ADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRFIAARSPQA
KGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMHNPKFAGAP
AEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYRLQDSRGRT
RLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEPASEEKSLA
RGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_1300 adenine specific DNA methyltransferase, putative
MIQIGRATLHRGEALSLIRTMPDESVDAIVTDPPYSSGGLHTGQRQRPPG
VKYQNSDARRRHAEFHGDNRDQRSFTLWASLWIAECYRVAKAGASCMVFT
DWRQLPAMTDAMQIGGWTWRGIVVWDKPSARPILGEFRRQCEYVVFGVKG
RLMPAHRRCLPGVYRHSIIAHQKRRHMTEKPMPLIHDLLEVTPPGCTVLD
PFMGSATTGAACLKTNRNFIGIELSPEYFQSACERLELVANPSTENS
>Dde_1718 conserved hypothetical protein
MPWYLEHHFDPDFDHMHLKPRETESGKVDHYNLGYAQNVVHGQLLAELKE
VSQEETAGLDSRYVYEKPVLPCGPNCAIDPANSHAIVAAANGYVFYNEGL
ITVKKMLNVRRDVDFHTGNVVFVNDIAVHGSVRTGFEVHGNNVLVKGVIE
GARIHARGALASETGVKGQKSAQLYAAKAIRLPFCENAQLRTHGNVMIDT
SCLHTDVYVSGSLVVKERLQGGTVYTSGLVYVMEQLGGGQGTPTQFVMGY
DPFLFSKLRDVEASIKNLKSKVDSLETLCAKSPEHRTEFSPLKNETSRKL
QAMHRIRTEIWEKFDAQDVPPGCRILVPGKVRPGVEISIGRAFLKVNDYL
EDVRFCLENEEIVIHSPAVDK
>Dde_1545 single-strand binding protein
MSLNKVMLIGRLGADPELKYSQSGTPVARMRIATSETYTDREGNRQESTE
WHTVVVFQRQAENCANYLSKGSMVYVEGSLQTRQWQDQQGQNRYTTEIKG
QRVQFLDRKGDGPGAPAQGGGERRSFQQPQQSQQRGGRQAPPADDGFDDL
GPAFPSEVSGMDDVPF
>Dde_1298 putative transposase B
MVSPSGFYSWLKAPEDALMSRSESLRKAIRFYHQRSSGVYGYRKIHKDII
EETTLRCCRETVRRAMKSDGLRSKVTRKHRYPANIEQIPRAAPNVLARDF
TAATPDQKWTADITYLWTNEGWLYLAVVLDLFSRRVVGWAMSERADAHLA
CRALEAAIQLRRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCSMSRRGN
CWDNAVTESFFSKLKREWVRGKRYRTRNDARQDIFLYLKAFYNRKRRHAF
LGYQSPEAFEQLFYQAKQKQAA
>Dde_0745 putative transposase protein
MKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNRYRKEGAVG
LVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELFASRYGLEL
SAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMDASPFDWLG
DGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLERHGVPRAIY
ADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRFIAARSPQA
KGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMHNPKFAGAP
AEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYRLQDSRGRT
RLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEPASEEKSLA
RGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_3727 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_1297 conserved hypothetical protein
MGRPIKYSKEFKLSAVKLVTELGYSCREAGEQLGCSSWSVRDWVRQLRAS
GDIPPENVTAASAQDMKALREENARLRLENEILKKAAAYFAKESL
>Dde_0452 hypothetical protein
MNRIMMNRAVPTGCAALALCLVVMWGGCRALAAPASPDALLDTVTSAIAI
EKAAHERGSEWEREQALLQEELRQARLEEAWYALQVNTFTRYVDTARSRV
DELTKTRDELVRMETELEGALVESVEALENFVRQDMPFLQQERDQRLRFL
HASMNDYELGGAEKLRRVLEALQAELGYGRGVELAAAQIDVQGVSRRVQL
LRTGRAGLYALSPDGSAAWRWTRAAGFVPVEDVYLDSLREAAEMTESGSA
FSLPVLPFGEVW
>Dde_2322 Holliday junction DNA helicase RuvB
MMMEQECVDDSIRPRTLDDFIGQEDLRANLRVYLQAARGRGQAMDHTLFY
GNPGLGKTTLAQIMASEMGVNMVCTSGPVLERSGDLAAILTNLGKGDLLF
VDEIHRMPVAVEEVLYPAMEDFKLDLVIGQGPGARTVKIDLEPFTLVGAT
TRIGLLSSPLRDRFGIISRLEFYTPAELACIVKRTAGIMGVSLTEDGAVE
IGRRSRGTPRIANRLLRRVRDFASVQNSAAVTAALASDALARMDVDELGL
DQMDRKLLSVLIEHFAGGPVGVKTLAVACSEEVRTIEDIYEPYLIQCGFL
KRTPRGRMATAKAYRHMNLLA
>Dde_0624 putative transposase B
MVSPSGFYSWLKAPEDALMSRSESLRKAIRFYHQRSSGVYGYRKIHKDII
EETTLRCCRETVRRAMKSDGLRSKVTRKHRYPANIEQIPRAAPNVLARDF
TAATPDQKWTADITYLWTNEGWLYLAVVLDLFSRRVVGWAMSERADAHLA
CQALEAAIQLRRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCSMSRRGN
CWDNAVTESFFSKLKREWVRGKRYRTRNDARQDIFLYLEAFYNRKRRHAF
LGYQSPEAFEQLFYQAKQKQAA
>Dde_0074 TatD-related deoxyribonuclease
MSKSKHKTPPPAAHTLGLPPAGVDSHAHLDLDALRPDLDEILTRAREAGV
SHIGQVFLGPQAWAQNRHLFDAYPQVFFILGLHPGDADACDENAVTAMKQ
AFATDPRLKAVGEIGLDYYWDDHPRELQQKTFVMQLRMAVQIDKPVVIHS
RDADEDTVRLLEAEGFAGRPLLWHCFGADAALAERIVRNGWHVSVPGPVT
YPANNALREALSVIPADRLMLETDCPYLTPVPWRGRRNEPALAAFTGACV
ARCLGIDPAELWTRCGNNARAFFGIQ
>Dde_0618 ISxcd1 transposase
MAKAAVNERKVSIRLACVAFSISQTCYRYESKFSDENDLIAEWLIRLTHN
QRNWGFGLCFLHLRNVQRFKWNHKRVYRIYCELELNMRIKPKKRIIREKP
EPLAQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDFNREGLTIEADFSL
PAERVIRTLEQVIEWRGKPESIRCDNGPEYISKKLLLWAANQGIRIEHIQ
PGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHATNWLWTYNNERPN
MGIGGITPAQKLRMAA
>Dde_0004 DNA gyrase, A subunit
MSNQVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELG
NGYNRAPKKSARVVGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQ
GNFGSIDGDSAAAMRYTEVRMSRLASEFMADIDKETVEFRPNYDNTLQEP
AVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGELVDGLLLELDSPECTVA
DLAGLVKGPDFPTGGFCYAGRGLRDAYETGRGTVKIRGRVEVEERKKGFQ
SIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDL
KRGTIPEIVINQLYKYTPLETSFGINMLAVVGNRPQLLTLKKVFECFLQH
RREVIIRRTHYDLRKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAK
ERLMQRFSLSEVQAQAILDMRLQRLTNLEHEKLIEEYRELLKKIEYFKSI
LENEEVLRGVIRDELKELKETYATPRRTEMLEDELEGIDIEDLIPDEDVV
ITLSRRGYIKRTPLDSYQQQRRGGKGIAGVHTGDGDFVQDFLVTTNHQYL
LLFTNKGRMFQLKVHQVPEGSRTAKGMHINNLLPMEENEWVNTALTIREF
TEEKYFLFSTRKGMVKRSSASLYAKARRTGLIAVGLREGDELIMVREVDD
NCEVVLTTEKGIAIRFGCGDVRPMGRSATGVKGIALSQDDSVVACVTVQG
GLESEIMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTPKTGEVLGAMT
VVSNDQLILLTSTNKIIRIGVKEVRSVGRATQGVRLVWLDEGDHVVGFDR
VSEQEQEQLDD
>Dde_3623 Ser/Thr protein phosphatase family protein
MLPFRWPQQPSRSTAKHAEHMNSLRFFHAADLHLDTPFKGLSGTPHMATT
LHAATFTALERLTSLCIARRADFLLVAGDIYNHEEGSLKAQFALRDACEK
LHAAGIGVFIVHGNHDFAGSRITRMQWPPNVVIFGTDNVETVPVVRSGKE
VALIHGISHAARNERSNMARRFTRDTSRADLPQIGLLHCTVASVAAADRY
APCTAEDLKAAGMDYWALGHVHERQTVLQTPLSVYPGNIQGLHINETGPR
GCYEVTYAPEDGFSLRFHRLGPVVWERLNVSIDTPATLDALEEEIHRRIA
ACCNAVQKAPQDEESGSTEPPVEAWMLRLTLEGRGPLNQPLRAAGGHEEL
TERLRTAWADASPTVWIKDIDLRCRPEADMEALRSGDNLLGETLRLVQQA
RDALEHCSAENGSTATVAQELLSGPLAPLFAAPQAKRLLDEPDTAALHDL
LDSVEMTCLDLLEAR
>Dde_3350 bacteriophage transposase A protein, putative
MAKAKDAYTAKELAIALNVTVMTITRRAEREGWQSRPRAGRGGGNEWIIS
SMPEATRTKLLAACAQDQLDALDRAPKLTLATAAVSESKKSKALARADLV
ALYTDWLDKSPHGAKSAARDKFILAYVGGAWPALLKVLGDKVSWKSIERW
KVQIQREGSAAALVDRRGGANAERMAMTESHAELLLSAVLRPNHPSISGA
IRMASAAMKARGLEVPAERTMRRFLDQWKATNFGTWVYTREGKKAWNDKA
AFFIDRDYSLIEVGDILVADGHVLNFETLNPWTGKPQRMELVLWYDMASN
CPVGWEIMPTENTQAIASAFRRAVLTLGKYPLIAYLDNGRAFRSKYFNGV
DFRQTGIAGLFQELSVHTIFAWPYHGQSKTVERFFGTLHDLEQWVPSYVG
RDIESKPPRLNRGELLHRKVWDASGCRALTMEETHVAVARWVDQYINRPQ
RGHLNGRCPAEVFMAGRGSGVDEAKLRHLMMAKEVRKLSREGIRIFGERY
YAPELYSRTHAVQVRYDIGDLSSLLVYSEDGKHFICEAHKVRGIHPAADL
LGTEQHSADLREALSLKKLQEREASSVARGVLEAALTDQRNRMRALQEEQ
VEPKAVSTGTLPQSKITSIEAAKRQAQTKRESAPTYIPPAQKPDIVNELD
KYEYLFNVSVRDGLTLRESDQEWMESIERTEDFQRDAAHRYERLRKYYAR
NRANPATA
>Dde_1289 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_0002 DNA polymerase III, beta subunit
MYLKVFKEDVIDGLQKAANIIPAKTGAAYLRSIWLKAEAGMVHVLSTDSN
IEFRGSYKAEVTEEGLAGVQGRAFVDLIRKLPAGEITLHLDPKTGTLGIE
QGRRKYTLPTNDTAWFQNFSDYPESGSVFWSGDFLQELIDKLSFCISDED
TMEAIACMSMKPRQDNAIEACGLNGHQFAMQRFLNDDIHALLPAEGILVQ
KKYLMELKKWLGADEIELNIDNKRLFFRTGDKRETFSLPLSYYQYPDYTS
FVSKLSTPDAGALEVNRKDMMAALDRVLIFNTDNNRCTYFDLEAGEVSLS
SQGQEVGSASESLEGTYDGSLKRIAFPTRNLIEIMNHYQSDSMRFTLTGT
EGPCGLTGENDPDYLVIVMPMKIVEETYYSEEEV
>Dde_0906 helicase, RecD/TraA family
MPRKTNSPAKLRGRIERVYYAGPKFSAGRLLTATGEEIQFAGNLFARENQ
PVVLLGTWATHPKYGRQFKVDAMEHDLDLNPEGLIHYLANHPDIKGIGPA
KARLIVEEFGDSFEETLIESPELIASKARISLDAANRLKDEWCKNRSVNA
VLAWLSAFGLTHHQVTTLVDKLGGNCLEILKADPYILIRELRGFGFKKVD
KIARKLGTPKDHTPRIRAGIQYCMHEALDQGNCWVEYEDLVDQANLLLVM
DNLDSRIRIEASLDNLISERLLSCESHAGRFLVALSDILKMEQDIAAIFT
KADASNPHFKSTRNLQKLILRQAETLNEKQLEAVHSALQHSISLISGGAG
SGKSYTVSVINAVCEECDLEVVLSAPTGKAAKRLEEVSGRTGTTIHRLLG
YDGKSFSKDSNNPIDADILIIDEFSMVDVSLAWHLFNAVDFARTAIVIVG
DHNQLPPVGPGNILRDLIHSNAIPTVILDKVVRQAGVLKENSTAILKGEV
RKTSDASTQGCRDWYLADQFTDPGAARNFLLDLFDKRLDALGFDLIKDVQ
VLTPTHKGPLGTKSLNEDLQRLIQKRLWNVSVPETQLGRRSPFLKHDKVI
QTRNNYDLNVMNGAIGHVVDVLPNGTLLIDFEGVAVEIEKGSPNLQDIQL
AYALTIHKTQGSEFPCAVVVVHKAHSFMHHRNLLYTGVTRARKTAIVLGD
RWGIRNCAKKCQVDDRKTFLSILLNNLNCPEEQSACAGAL
>Dde_1581 DNA processing protein DprA, putative
METISEHPDAYTLKRMDEAGRRNFWASLALRYSCGIGPRTWKRLLTWYGS
PYAAVMDVADWAAAGVPATRADSCRRGLWREQARAEWDAAGKAGYKILLW
NDPRYPERLKEIPDPPLFLYYLGDASLLSAPMVGVVGARRCSRYGLDVAA
CISRELSRRGITIASGLARGIDRQAHIAALEGIGSSVAVLGNGPDQIYPP
ENRDVLFSLAGRGLVVTEFAPGVPPESKNFPVRNRIISGLSLGILVVEAA
ARSGSLITARLALEQGREVFAVPGRITAQTSSGCHELIKQGARTVCGAED
ILLELAPLLRAAAEKPSSPAVQEPMHPHTAHSVPQSAGACCHSDVPSVVA
AAPADGGAAGTEPATSPADADGQKVLAVLARRGGLHIDVLCRELDWDAGR
VSAALLLLEIAGSVRQAPGMLYCPA
>Dde_1935 Site-specific recombinase
MLDNSNVAPGKNKTLRCAIYTRKSHEEGLEQEFNSLDAQRESAEHYIEAQ
RMRGWTALPDRYDDGGFSGGNMERPGLRRLLADIDAGKIDVIVVYKVDRL
SRSLLDFMKMIDLFNEKGVSFVSVTQHFSTTDPTGRMFLGILITFAQYER
EVIAERIRDKVAAAKRRGKYCGGVPILGYDVDRDNKKLLVNPDEARTVQY
IFRRFIQIGSAKKLGQELNEQGYRTKAWTTKKGKVREGSEWNTAHIYRLL
NNRIYIGEIAHKDRSYPGEHEGIIDRATWDKVQAILEDNKPVKVSMARTK
MVAPLKGVIRCGHCGCAMGPTYARKNGRHYTYYICQKDSKRTVSRCPLKR
IPAGDIEQAVIEQLSAVFRTPTLVAKTYFAARDIEQAERERLFKQKAQLE
MELSQAREQALELMKPGSDQPGKTEMLTTVNRQAVELSKQLTHVSERCRA
YRGNSITEQDVSEAFQNVEGFWEDLFPVERNRLIRLLVDKVEIRETGIDM
ELRTNGLTTLIAELAGLACEVTERRASR
>Dde_0922 Adenine-specific DNA methylase-like
MELFATDLERLAFLLEADAALTLDPDALGTEAAEQSAPEELPPEKRPKYI
TNYIGSKQKLVDWIWKHTPEGVGTVLDAFSGSAVVAYMYKTKGLQVIAND
RLRYCHHAAKAIIENNSVRLSEDEIEALLADNAKAGSFVQDNFKGIFFAK
GVHALIDTIRANCDKLSGFKKDIALFGLGKTCMSGKGGFGHFSSSTDYGR
RQDTPDEFKDRLRKNLQRINALVFDNDKENKAHRQDINDLLPKAKADLAY
FDPPYATEFSTTNYERAYHFVEGLMTYWEGLEIKADTKVKYYETDHKTVT
KANASEFFQTFLGNAKHIPHWLISYRDHAYPNEQEMKRIIGSFGKQSRMK
SKDHHYAITSKHGEASNAKERLFVCAPGAKASAEREEKPVPMAAAANFHT
SIPVDIRLGDGERLATEAMDVGSAGDPQFSFVLCRTGTNKNGDHFTAEEL
SGRHMTAVNKKVDLQHSQEFNDIVGGIVAADYLEDDNGGRVECVGELYVH
DTPAARLAYKLMKRGIISQVSMECDYQEGECSVCHKRFQNKADYCTHLRK
FKGRDVGGQPVFEILHGVTFTGLGLLDRKGADENARILQVASLQSQPDQS
QPEGDSTMEDKTKPTDEPAVEAAKKKPAQQEGDPARVTDLEKENRQLKAQ
VAELQKRVQELEAEQKAAACRSRAKKLLTRLEKQGLSFASEEDREAELKR
LAELSDEAFAATEAAYERLPKSAKADKDKEEKPADSDQGGKPAAKASTET
PLRSDAGVRPHDVDDRKVSLEDRLRDGFMAAYRNRVGEDFPEHSQINA
>Dde_1802 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_2973 DNA-directed DNA polymerase
MCLHLRQYRHAAPVREGGMAVDVTVLGRAACSRVRHDGGTPSAPAAQRQG
RPLYALVDCNSFYVSCERVFRPDLVRRPVVVLSNNDGCIIARSAEAKALG
IPMGAPWFKVRRHAESAGVTVFSSNYALYGDMSSRVMRVLERFCPDVHVY
SIDEAFMRLDSLIMPPGMSPERYAACLRREVYRRTGIPVSVGLGCTKTLA
KLANRLSKQQNAGARAMVPAAFRYAGVFNFGAVTDPDVMDALLETLDVTD
VWGVGARHAGRLRTWGIRTARALRDAPDDRVRRYMSVTGLHTVLELRGIS
CLPLDDAPPSRRSVVSSRSFGTLVTHKEHMLEAVTAYMTRAAEKLRREQL
EAHCVGVMISTPRHGDGPRYADSAQVQLAVPTSHTPQLIVRARALLESIW
RDGYRYQKAGVMLSGLESAVSRQVSMLPALQGTGRGLERGRRLMAAADAV
NARFGRGTLEYAAAGLGRPWSMKQEHLSPRYTSDWKKLPLVR
>Dde_2054 DNA mismatch repair protein MutS-like
MQSRSAHVLEFDKVLRHLAGYAVSEAGAQACLLLAPAADCDSARMRCAFF
RQGQLWAERTGFSLAPFPDLSGVFRFLESPAAVLDIDALWAVRQVLAQSR
ELAVAIGSGNTAENWPLLAQMLERYRMPEKALSGLMRCLGEDGLLRDESS
PELLLVREEIRRIHRLCTRKVKELANTYNLSHYMQDEFLTLSSDRYVLPL
KANFKGRLQGIIHEYSQTGETCYFEPMFLVEINNDLQNLKRQERAEERKI
FEYLTGLLRAEMEGVNACWNLLVEADVLLARCALAGAFGGIAIDFDDTRP
FSLRGVKHPLLALSSADTHPVDLELLEGQNCLIISGGNAGGKTVSLKTIG
LVALMAAAGLPVPAAEGSTLPCWRAVHAFIGDEQSLEGNVSTFTAQIRNL
SDIWQEVGSGSLVILDEFGAGTDPAQGAALAQAVVDELMEKNVTVCVATH
FPALKAYALSREGVRAASVLFDPGTKRPLYRLAYDQVGASQALDVAREHG
MPDAVLRRAHNYLLLDGEDSAALIERLNALAVSREQELDDLEREKLRLKS
KRDKLEARFEKERLRLFESVQAQAQDVLRDWKQGKRSHKQALKDLAAVRQ
RLVSEQAAAQQGQAAPVEALCAGMTVRYIPWGKKAVIEEVDARKERLKVD
LNGVSLWVSCKDVAASVPPAAPKTVRRESVVAEDNVQEPAGPPMRADLRG
MRADVAVAELAAVLDNALLAGTREVEVVHGRGTGALRKEVHAFLRSFAAV
DAFRLAPEGRGGDGMTIVELK
>Dde_1232 conserved hypothetical protein
MGRPIKYSKEFKLSAVKLVTELGYSCREAGEQLGCSSWSVRDWVRQLRAS
GDIPPENVTAASAQDMKALREENARLRLENEILKKAAAYFAKESL
>Dde_1488 conserved hypothetical protein
MADFSHKSTVLVTCPLAASALLATELKALGFTPRNELPAGVEVQADLNDC
MRMNLHLRTANRVLYQVAAFRARDADALYRAASRIHWELFIAPEGYVSIA
SSVDNPTIRDSRFANQRLKDAVVDRIRSRTGRRPDSGPLQTGVVLFLHWH
DDWCRLYVDTSGEPLSRRGYRKNPWKAPMQETLAAAVLMAAGWPGGGHLI
NPMCGSGTLAVEAVLMAMNSAPGLLRDSFCFMHLPGYKPEIWDALLDRAE
AQETGEIPGRVIATDIVPEAVKASQENAVRAGVAGFIEFGVCDFTQTDIP
QPSEGRDVIIMNPEYGARLGDAAQLEGVYRAVGDFFKQRCGGYTGYVFTG
NMKLAGNVGLRTSRRIPFHSAKIECRLLEYELYSGSRKHADHQ
>Dde_0912 integrase/recombinase
MSNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARVADELAP
GIICRAITAGLLDRAFSAGAVTESGRGPRSAASLHRMKAAVRAFFAWASE
AGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFSALRDRA
MIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRT
LLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKE
LTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEA
LERL
>Dde_2053 DNA primase
MSGHDNSAVQAIKSRLNLAELARRYVELRRIGNRWMAPCPFHQETKPSFS
INEEEGFFYCFGCQASGDIIDFYSRINGLEFREALEQLAEEAGVTLGQRQ
ADPREEQERKFRSRCYEMYELATKHFRRNLQSAAGAECRSYIADRGIPDE
IVSSFELGWSKREWAALSDELQRAGYAPRDATRAGLLSSNDSGRMYDRFR
GRLIFPIKNLSGKVIAFGGRIISSEDQAKYINSSDSTIYKKGDHLYGLYQ
ARRSISQHKRALLTEGYMDVLALHQFGHTNACGVLGTALTEAQVKRLGGF
CSHVDLLFDGDGPGRKAALRSCEMMLVKGMDCRVVLMPEGEDIDSLLHQQ
GAQAFRELTESAPDGLEYCIRTLRDSYSPREILDWTAAFLRQLDRPDLAS
FYVTRLAGGLGLQEADLRASLSSPAGRNRQQRAAGNRVQTGKEKKLEMHL
MEFLVRFPHHISNLQARGAEEVLVSRWARDMWDKLLAFGADEAPNHFSEE
QKALWIRCRVASPIPAENERQELEDLYSKLAELNQKEQSRMMLAALRQLS
SDANSEAGFELLRAMKDNLGRSDGQH
>Dde_2849 ISPg7, transposase
MQPKKSDRQRSFLCPDLIDQLDPRNHLLGLAKAIPWQVFEDSFRPLYATS
GRPAKPVRLMVGLLILKQLENLSDERVVEIWVQNPYFQAFCGQQRFTWKL
PCDPSELTYFRRRIGEDGVRKIFEVSVTLHGDKAKEEEVVVDSTVQEKNI
TFPTDAKLLTKIVTRCRILAKQEGIKLRRSYQREVKKLLRIIRFKSKGRE
QGEAQRAIKRLRTIAGVLIREMKRKLSPEALEAHQQSLDLYDRVQRQQRS
DSNKIYSLHEPGVSCISKGKAHKKYEFGAKASVTVTKTSGIIVGALSFHD
NPFDGHTLPAVLTQVESIVGQRPTMAICDRGYRGKRQIGETRIEIPESGK
GPKTEYEKRKARERFRRRAAIEPIIGHLKSDHRMMRNYLKGRIGDSVNLF
MACAAFNFRKFIRLLYFLCPKLLWHIFRPNVRPVRACA
>Dde_0940 hypothetical protein
MSAETKTLFSGTALGLSGPLRVEILPNGMTARLTQPFRVRTGAGRIIEVP
AGFETDFASVPRLFWRVVPPWGRYSPAAVVHDYLYHTGKVSRLAADRLFL
ELMAALGVPLWKRQFMYWAVRLGGWLAWNASRKREAEHA
>Dde_0125 histone-like DNA-binding protein
MLTKAEFVAAFKDALPEVFETKVSAEKAYDAFCQVLADGIAKNEGVRLPN
VGALTVAERAERQGRNPQTGQPMTIPARKVVKFSPAKSLVDGVNR
>Dde_3762 ISxcd1 transposase
MAKKAVQEKQLNIRQVCEAFNISQTCSRYEPKLSAENELVADCLIRLTDN
QRNWGFGLCFLHLRNVRGYRWNHKRVYRIYCELELNMRIKPKKRIVREKP
ELLGQPQRVNQSWSMDFMHDQLQSGRSFRLFNVIDDFNREGLTIEADFSL
PAERVIRSLEQVMEWRGKPESIRCGNGPEYITDVGCQSGNTH
>Dde_1588 ATP-dependent DNA helicase, UvrD/REP family
MLQQIKASAGSGKTYRLTGEFLDRLRAASEESSAACALAPAGAAYCWPEI
LAVTFTNKAATEMQERIIRTLKERALGMGASGPAADWPASGARRWVNTML
RRYSSLNVRTIDSLLHMLVRLCALELGLPPDFEPVFDEEEIFTPLYERML
EQARSGSHQLRQQLVDASESLLYHADMQGFMAGNSLRERLLHLMRYRLRH
PEEEMPCVDAAELKTRMAEHMHALQASAGFLLQGIEREKLAASAHYVNFL
KKLPPLGSLSVVPESKMGTKPDIDDCLNKKSKGTASADMRRAHDELTRAY
GWLSREGKLMRRALQQAPFITLINLLTEQAQSMLKQEGLVPNALWPAYAR
TVLSGEAGASEAFCRMGTRLTHLLVDEFQDTSRDQWQAIMPLATECLAKG
GSVTYVGDVKQAIYSWRGGDSDLFDGALEEPELRAICPSPRQLLLPFNWR
SSEIVVTTNNRLFEPLGSGQSALAAARAICDDDAPEEVIQEAASRILRSF
TGTAQQVPEHRQGSGGLVRLYDLYADSSEDLYESVKEELHRLITEELSGR
RQWRDIAVLVRSNPEAGRVAEWLVEWDIPIITENSLRLADHPLITQTVAF
LRFLDYPLDELALCEVLCGCELFGGAGGLARASLDGQLATRGDRPLITWL
RETYPDIWKTWFAPFYTQAGLMSAYDTVQELFNRFMVCRRHPADTVFIRR
FLEIVHAADARGLRSLSTFLEYWQQHGTEEKVPMPDNLDAVRIMTMHKSK
GLEFPVVIIPFHHHTLQNDNTPVRTTVDGQDVMVAACAELGAQWYAARAR
DACEQLNLLYVAWTRPVDELHAFLGCTSRNENKAPMLSALRVMLGEDYPA
RGETVQWGETPHAQAAGSSPAGTTADAVQQPCAGSAPCSAPAEPAAALQN
WMPMDWLPTLKIFRNPLEDVVFDERRRGELAHSCMESLKLTGDTESDIRR
AVSHALEKCPFPVPDKESTAQELHGMLRWAASLPDMPRWLAHGQPEQSVM
DADGALHRVDLLVDDGHTRTVVEYKTGAQSAAHRQQVSRYLNLLRQISPV
PAAGVIIYLDLQQTVTV
>Dde_0047 Elongator protein 3/MiaB/NifB
MRPQVHTDGMEYIAARTILARVKNAPDALFGGHYTMNLYRGCPHGCIYCD
TRSNCYGIGRLEHIRAKRHALEILWHEVVSKRARGTVVTGSMHDPYLPQE
KEEQLTRSALKLLIRHGFGVHVITKGTLVTRDADLLAQAQRTFGAVSITV
TTPDDGLAAAIEPHAPPPSMRFKALAALRAAGVYAGITLMPVLPFITDSP
RDITRLVRCAADAGAAYVLFWPGMTLRDACREHYLLRLEHLFPGMARQYR
RRYGDRYVCMSPAAAQLNRIVDRCTAACGMERSVRVWQPPRPEQGRLL
>Dde_2204 exodeoxyribonuclease VII, large subunit
MTKIFSVGEVTRGIKNTLEAAYPFVWVRGQVSNLSRPASGHVYFSLKDED
ASLACVWFRHAQRGEETFDPLTGEVFDDGPRPGLAAVMRNGQEMLCAGRV
TVYGPRGTYQLVVELAQDVGLGELHLRFEELKKKLAGMGWFDAARKRPLP
RHPLRVAVVTAATGAAVRDFVRIAADRGSGCSIRIYPVPVQGDDAPPRIA
AALELAAAHDWAQVVVLIRGGGSLEDLWAFNDERVAKAVFESPLPVLTGI
GHEVDTAIADMVADVRAATPSHAAQLLWPERQELVQRLDDASQLLDRAWE
LGMQEREKSVKECERALHWLSPQRSLERLDERFAEAVRRLMAAAQALTER
KERRLAAETASLRHAFGPAALDTGLLAVRQLAARLVRAGESFAERAAVRL
ERETLRLKAADPLLPLERGYSILQRPDGGFVRSVAGLEAGDNLRVLVRDG
AADVAVTAVHAVSAAEAAGMPAGGKKIKGDRSDDES
>Dde_1971 Tyrosine recombinase XerD
MLKNSQKNEAAAPPHPIVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFL
HHKKSRLEDVTDQSLLLYIMHLRRRGLSSKSLARQLAALRGLFRYGTEQN
LLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPDLKEKLGFRDRTMLE
LLYAAGLRVSELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAARFLG
AYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVADAGIHRQISP
HTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQ
FHPRSKIKI
>Dde_0152 DEAD/DEAH box helicase-like
MESKEAALRQKKGVSACNGRNIRLCRSVVITRCRKTHGKETYKIMVEKLL
FADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKT
AAFGIPILERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVV
PVYGGQPIERQVRALRRGAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDE
ADEMLDMGFRDDIEFILGKMEQEVQTVFFSATMPRAILDMAQRYLKEPEF
LKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLDVYNPKLTIVFCSTKVG
VDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVATDVAAR
GIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKL
RDIKRFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYIELV
EGIIGEEFTSVEAAAALLRMMMHRNAGDAVTEEQKFGDTGAQPGMVRLFF
NVGRKARVTARDFVGAIAGETGLPGRMIGSIDIYDRFTFVEVPNEFAAEV
LAVMNGNQIRGNKLAVEPASRR
>Dde_1944 putative transposase protein
MKTRGDVLMKAEEARRAFVIKQAVAGAFTVREAGEVLGLSYRQVIRLKNR
YRKEGAVGLVHKGRGKASNRRIAQEIRKFVAEKAKSDFEGASCQHMEELF
ASRYGLELSAKSIGRILKEQGVACAHRHRSPKGRRCRERSRRRGDLVQMD
ASPFDWLGDGVMRSLHGAIDDATGEVVGLWIEKNECLSGYLRVLRQMLER
HGVPRAIYADRHTIFVSPKTGKLTIEEELQGKVAPQTQFGRVLETLGVRF
IAARSPQAKGRIERLWRTLQSRLVIAFRLAGIRTVEAANDFLGTYAEQMH
NPKFAGAPAEAQNAFLPVVEGTNLDLLLARHEQRKACGDSTVAFGGQKYR
LQDSRGRTRLLRRGKAVTVVEKLDDELMALADGEAFVLVPVVTGKSSEEP
ASEEKSLARGAQEREQTSPAAESSWHWYLHPREPIARAIHNPQETTPGTW
>Dde_3548 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_3402 hypothetical protein
MRGKRYRTRNEARQHIFLYLEAFYNRKRRHAFLGYQSPEAFEQLFYQAKQ
KQAA
>Dde_2051 nuclease (SNase-like)
MHKKALPVSVPAAYAVMRLCLCTFLLACFACTAEAGLLRYDISSVPDGDT
IVLAGGTVVRLRGIDAPEVGRNGHASGFYAHRAHQQLVGLLKKRQVLIDM
EKSSRDRYGRVLADVYLPDRRLLSEVLVASGAAWLYQHADTPVGLRDTLL
AAQRRAITAKTGMWRYVAGLDTPQGGYRGNRRSMRFFTQKCEAYYKISYR
NVVHFDTLTESFMAGMAPARSCDVWPLQ
>Dde_3571 ATP-dependent DNA helicase, UvrD/REP family
MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIA
ASNILLLTFTRKAAQEMQHRAAQLLGQSAGMVGGVQGGTFHAFAYSILRM
HKPQGYEGDLSVMDSADAAGALKHCKDTLGLGKGDRSFPKTQTVMGLLSK
ARNKELTVEDVLRREAFHLASYAGDLTRISDTYRAFKRRHALMDYDDLLF
ELERLLQSDADLLAYYRDRFRYIMVDEFQDTNLVQARLVRLLGSGHNNVM
AVGDDAQSIYAFRGANVQNILDFPDMFPGTRIIKLEENYRSVQPVLDLTN
AILDDAPQAFRKKLFTRREGGPTPHVLRPLSDLTQASMVTSKITELLRTY
PPDEIAVLFRAGYQSYHVEMQLGKLGVKFKKYGGVRYSDAAHVKDVLSYI
RLVVNPLDLPAFQRMASLVKGIGAKTCLKLYDAAQKADRSVLKKACARFP
DLQHDLDMLDALRAKPLTPAGLTQAVIEHYQPRLEANYPDDYPRRQHGLE
QLVQIAASYNDVDLMLSDLCLEDPATDKGEDISAVTLSTVHSAKGLEWSA
VLLIDLVEDRFPSRHALNKAEDFEEERRLMYVACTRARDYLALFVPATIY
DRSGGGNTPANPSPFVRDLPAHLYEDWRENFTGTLTRRQDARPVTVSAAR
TSGPASGGGRQAEQGGGALGNGGRPASGYCTHKIFGRGKIIQHVPPDKYR
VNFPGFGLKVIMAQYLTLE
>Dde_0620 hypothetical protein
MTVGKWAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSV
EKASKVLAVLKEHHSGNNLNRMRKNLIAAWNWGIKNHKIPAQNPFALTDR
SSEIIKLRYVPPMEDLKAVVDVAAGEQRLMLLTAFYTAARKCELFRLRWT
DVDFASNKIGLWTKKRKGGNLELDLMPMAKPLRSLLEEHHRGAESEHVFD
QSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIESGASIVDVQE
LLRHKSANVTARYIRRLKKGNRAVEALEMAL
>Dde_0341 DEAD/DEAH box helicase-like
MTDETNRNSGFGDELQNDPAARMASELTGVDEPENALPALTFEEVPDTIR
QAAARAGWQSLMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLIDRI
DPHKNECQALVLVPTRELALQVVHEAEVLYQELGINIAAVYGGVGYGKQT
DALKAGAQLVVGTPGRVLDHLLRRTLTLDALRVLLFDEADRMLSIGFYPD
MKEVQRYLPRRRISTYLFSATYPPHVVRLAGEFLHDPQMLSLSHSQVHIT
QTPHVFYECKPMEKDRVLVRIIEIENPASAIIFCNTKSNVHYVTAVLQGF
GYNADELSADLSQAKREQVLKKLRNGQVRFLVATDVAARGIDIPDLSHVV
LYEPPEDHESYIHRAGRTGRAGASGEVISLVDIMQKLELGRIAKHYQIDM
QMRPTPTDEDVAKVATERMTAMLEAKLRSRSPLQRERMQRFMPMVRQMAE
DEEQMKLVAMLIDELYQDSLHAAPPAPSAEEHRQRPAARPAPRTAPAPRP
QQAAAGNEQQDSDPRPKRRRRRRKPASSE
>Dde_2841 conserved hypothetical protein
MDTRHPRIISASRRTDLPAFHTAWFIESLRQGRCQVPDPFNPARHRTISL
LPQDVNGIVFWTRNAAPLAPWLHEVDARQIPYYFLWTITGYPRALEARTP
DMQQAVDSFRSLAVRLGPARMIWRYDPVIITDITPAQWHEENFARLCAAL
KGCTQRCITSFVEPYVKTRRALAALARSGVHTHLPGEHAKAAMAAALHSI
AANHNITLQTCCTPVTGIHASLPLAAPCVDAALLQRIGGNATGASATDKN
QREHCLCAPSTDIGRYGTCRFGCVYCYARR
>Dde_3468 serine/threonine protein kinase
MFIGRYRVCGLLGRGGMGAVYKVLQPVTGRMAALKLLRPSDVLEELVGTE
ELARRFYEEARIMGQLEHPHVAAVLDADHDARNRPFFLMEYYCLNLGMLI
GESYRVEAPTRRLPLDRAVRYARQTLEALRRMHYAGIVHRDVKPYNIMIT
ADDDVKLIDFGLSRLRGETGHGTAGRLHKGVKVGSPYYAPPEQENDPESA
DARADIYPVGVMLYRMLTGVLPTGEEAMAEGGIPPASQFSDDLDAEWDVF
FERAMAPDPGARFACAAAMLDRLNVLERRWRARVTNTCTLAGASPLRRQC
PPVHTDVRTVPLKAGTREARGVFGLDDLWRPLCPAGETFEDQGDMTVLDS
ATDLMWQQSGSDYPLTWDEAAEYVHSLNAMRFAGYGDWRLPTVAELVTQL
AEPPMLGDYCVPPVFDTRCDVLWSADTKSHVAAWFVSASMGFVGWQDFTC
RFSVRAVRTHSGE
>Dde_2898 ISxac2 transposase
MAQKAIQEKQLNIRQACEAFAISQTCYRYEPKLSAENELIADCLIRLTHS
QRN
>Dde_3763 ISxcd1 transposase
MERYNRTVRYDWLGQFLFSSIEEVQDHATNWLWTYNMGIGGVTPAQKLRI
TA
>Dde_1534 polymerase most proteins contain PALM domain HD hydrolase domain and Zn-ribbon domain-like
MSMRNASISIAISEDGLSAVISDWSAAQEGGALISSSGLNDALRQAGVIT
PPLVGVLTKINTVLKKGEDPRGITVARGTLPEPAKDAALQPAGDFRMPVF
PGDVIGTITPARSAVPGKGVNGTVVKSEGPEKGQEISFAEDCGCHLDTTT
LQVRASRYGIIGITRNRIHMRPLIAVPPDAMVAMGSVFARDFKGREVTPL
QMESALKAEDITQPLETAVLQAALKNAQKSNAEIPNVPLSRGVQPQSGKD
GWFELYIKDERSSIGIEAADGSIDFRARGMIKAVTSGTKLGKLHAPTRGR
PGKDVFGKLIPAHDGAVFLLQTGEHVDALEGSEFAAAIEGMVIYKNNSLS
VSEVFQTRGDLNMSVGNISLEKGSAHIRGAVLAGFRVSAPRHVRVDDIVE
NAEIECGGDVEIGAGILMDRTGFIKAGGTISATFAKGARLESGADIIIAH
ELSNCTVFAAGSVEAVKGRGKIVGGEVHAVKNILANEVGSDLGVLTTIIL
GTEPQPKDNTRSARRKELNSLIERIDAGLGQRDLRTLLEQTPPEKRPAVA
SVIKTRIAAQEELRALDEEEKQEKERLLNAPKPRLKVLKTLYPGTSIKAG
GLTLCITDPVPYSQIYFDPQAGEIVIASL
>Dde_1914 integrase/recombinase
MSNRTADLDLTGATEAFCARLSAEGRSPATIAAYRRDLALVARVAGELAP
GIVCREVTVGLLDEVFSAGAVTESERGPRSAASLHRMKAAVRAFFAWAAE
TGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFSTLRDRA
MIEVLLGTGIRLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRT
LLRRYLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKE
LTPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEA
LERL
>Dde_1564 DEAD/DEAH box helicase-like
MDRKEETTVKTMLQEFVTDTIPEYIIDGSHNILNSGGVLKLSLKKGEGYW
DVEAHIQGDDFQNYSPKLSLSIGEETVNYMCNCPDSFSGVCRHVGAAALK
LLASLETSDDAEPVAPKTEWRQSFRNFFSTELEPEAGKHYLIFRFHPEPG
RLQVSLFRARQNKSGLSTVHNEITLEQIIRNPDWCELSPDLPAVAHQIGQ
YLDYHGHRIEIPDGLLTWFLWTIRNEYYLFWQETEKPCHIDSSTMRLKLQ
PRLAEDGLGFDVLLHREGKPPQSILDSEVTFHGQLPLWVCWRRGFYPVHT
SLSSGLVQEMVQHPPAIPQEDISEFLDRVWTQLPASDLYGQEEFLEHMEP
IFVPASYNPKLYLDEEGSLLTLQIQNIYETIHGEFLLPGPNPEFQTGSYP
FEGHTFLLRRQQEEEAALTQKLIEMNFQPRNNRVWFLEPEEAINFLLDAY
PKLIAEYRVYGEKALSRYKVRLSQPVISAKVESNEEEKWFSLDLNVEYDG
QSVPIEKIWKAWTQGKRYVQLKDGSYTSLPESWLKTLGHKLRAMGLDPEK
APKKRFEQYEAPLLDNLLEDLPEVQTDSFWNALREKIHTFKEITLIEPPQ
GLNATLRGYQQQGLSYLNFLREYGFGGILADEMGLGKTIQTLSFIQYMVE
TGRTGPNLIVVPTSVLPNWDREAEKFVPGLRRLIIYGTRRENMFSHISES
DLVITTYALLRRDLEELQEHEFNSLILDEAQNIKNPNTITARSVRKINAG
LRICLSGTPIENNLFELWSLFEFLMPGFLGSQHSFQRGIIKPIKDGDPET
LEYLRTRVKPFILRRTKSEVAKDLPPKVENVYYCALAEEQQELYGALAKK
LKDQVMADVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGLTTNLP
SGKFDAFKDMITDIVEEGHKVLVFSQFVQMLHIIRSWLQINDMPFCYLDG
TSKDRFDQVDRFNDSPDIPIFLISLKAGGTGLNLTSADYVIHYDPWWNPA
VENQATDRAHRIGQKNQVFAYKMICQNTVEEKILKLQDMKRGVADAIIPG
QDSWKSLTRDDLEMLFDV
>Dde_2803 putative resolvase
MAHVGYIRVSSIDQNTDRQLADLDCNLVTEVFEEKASAATSKRPKLEECM
RFVRKGDTLHVHSIDRLARNLDDLLTLLKKFIGKGVAVQFHKEGLTFTGE
DNPFQTLQLQIIGAVAQFERSIIKERQREGIAKAQAKGKHCGRKAKLTPE
QAEELRHRATVMGEEKKALAAEYGISRQTLYRVIAESN
>Dde_3342 conserved hypothetical protein
MGLSRTAYYRLPASGSRVHEVIEAINSLIDKHPRWGFWKCFKVLRRKHCW
NHKRVYRVYCELRLNLKSRAKKRLPQRTKQPLSIPAQPNLTWSADFMSDS
LYAGKRFRTFNVIDDFNRELLHVEIDTSITGRRLIRVFERLRLERGLPQV
LRTDNGPEFLSGEFVAWAESAGMSIQYIQPGEPNQNAYIERFNRTYRTEV
LDLYLFRTLNEVREITHWWKIEYNEQRPHDSLGDLTPSEFLSNNAGNSIF
QLSS
>Dde_1748 DEAD/DEAH box helicase-like
MFLDNKKHGKVGETLLQSIDKQSELAVISNAFSIFGFDALKKSISKVSKA
RLLLSCNRKDGSLSQLLAGDEFETRFRNQLNQSYIARECAEWIKKKAQIR
LVKNPAALGQNLFVVDGKPSPLAIQGSSAFTCEGLGFAESDRHHMNMCVS
DAPNVSPLLSWFETLWRDTGLTEDATSTIVNGLETLHKDNSPEFIYFLTL
YNIFNDLLDDIDEENIVKTKTGFHDTIVWNKLYKFQRDGVLGAIDKLEKY
NGCIIADSVGLGKTFEALAVIKYYELRNDRVLVLCPKKLRDNWSIYTIND
KRNLLAKDRFNYDVLNHTDLTRRTGKSGEINLETINWGNYDLVVIDESHN
FRNNTKSDNGLTRYSRLMTDIIRSGVKTKVLMLSATPVNNRMNDLKNQVA
FITEGFDAAFADNGITSIEDTLRKAQTKFNQWQKLAEEERTAEKLLDSLN
FDYFKLLDMLTIARSRKHIEKYYDVAEIGEFPERLTPINIKADIDLNNEF
PALRDINRTIRRLNLSAYSPLKYVRMEKRNEYDRKYDTLMKDGKSVFRQV
DREQSLVHLMRVNLLKRMESSINSFSLTLEKLLREVTNLLQKLDDHNGSE
IEELSIEDIEVDSPEFDDFLIGRKVKVLIKDLDQIRWKQDLEDDKEKLER
LLAVSRAVTSNRDAKLDNLKSQITAKCQEPINARNKKVIIFTAFADTASY
LFEHIASWAKTSLGIHTALITGGGANKSTLQSVRSDFDALLAAFSPVSKE
RSKIDDTVSDEIDILIATDCISEGQNLQDCDFLVNYDIHWNPVRIIQRFG
RIDRLGSKNKRIQLVNYWPNMELDEYINLEARVSGRMVLLDISATGEENV
IEQDSASHMNDLEYRRKQLQKLQETVVDLEDLSSGVTITDMTLNDFKMDL
SAYLKDNASQLESAPHGLFAISRLESDLAADGLEPGVIFCLKSKKDEPSD
DGYALAPFYVTYVSDDGDVTLGFTQAKKVLDILKKQGVTHKKPDSALLED
FNRRTQSGKDMRHYCNLLESAVTSIVGKAEEKGVESLFSRGGTNFSKQSF
KGMEDFEVVSYMIVEAK
>Dde_3430 putative transcriptional regulator
MGRMSEQSKRLQSIRANKMEDRWLSVDEIGKYLGVSSDTVYRWIDKHALP
AHRMGRLWKFKKDEVDEWVKAGGAADKSRQDQAE
>Dde_1318 DNA topoisomerase III
MSKILIIAEKPSVAREIAPLVGAVSRRDGFLEGPTHIVSWAVGHLVNIAE
PEEQDEAWGGRWALEQLPMIPRQFRLTVLPEARRQYETVRQLMHRDDVAH
VVNATDAGREGELIFRRIQLHAGCTKPVQRMWANDMTEEGLRRSLGNLLE
DAAKRNLGLAAFARAEADWLIGMNLSRLFTLKAGSLISVGRVQTPVLKLI
CDRRAEIEHFVPSDFWTVEARFGRSAPCNAGGAAAAAGSAAPVCLSAGAA
DAQGAEKHPPQAAAATAGQASCPPDENADARGTGTETPADDVFSAVWHLP
PDFKETRLERQDDAEAVIGRCQGGTGVVDATENRKGSQKPPLPFDLTTLQ
REANSRFGYSAKETLAIAQALYEQRKLITYPRTDSRYLTRDLFKEILKHF
RAVYHLYPQETVPAVERVKAGCKFDCVNDKKVTDHHAIIPTAAKGRPDAL
SAEERNVYDMVCRRFVAAFSAPASFMSSTVRVLSGEDVFVARGKVFKDIG
WLAVEPWRTAEDNPLPALRKGTRLHVHEVSAVRRQTKAPAHFTDASLLAA
METAGRLVDDEELRNAMKERGLGTPATRAQIIETLLARGYVEKKGKRLIA
TDSGMQAAALVSSMLPDMASAELTGLWEKKLKDIEAGNNTYPLFMQEIRT
MLAQSVESIKPRNVKNILVETAARLASRELDGKCPLCGAEVEERDKGFGC
SRWKRADGGCPFMIWRTFMGTQIDAGMVRELLETGCTSQELQLTSRGGNT
FSARLRLEQGRVRPDLPEKHARASGGAAPSAGVDMHDPAENPFFADENPF
PPEMP
>Dde_1721 transposase, IS5 family, truncation
MALGKQGDRNGKMFIAWDELPKSPGHVFYDRLQSLLNKAGFDSFVEGLCA
PLYASRKGRPSIPPGRYFRMHLVGYFEGIESERGIEWRCADSLSLREFLL
LDTGQSVPDHSSLSRIRSRLPLELHQEIFTWVLDVITHAGLVQGDRIGVD
ASTMEANAAMRSIVRKDTGEGYRQMLYRMAKESGMNTPTNEDLSRMDRQR
KGKKTSNKDWESPTDPEAKVARMKDGRTRLAYKPEHAVDLDTGAVVGVDI
HPADQGDTKTLSETLKTTKKNLEKVGKAPSLNNPTELIADKGYHSRAVLK
ELDDSLWKTRIAEPKRKGLNWWNGDHDARRAVYNNRIRLGSGKACESAKR
RTELVERSFQHTLDRGGMRKTWLRGRENVEKRYLLHVTGFNLGLLMRKMI
GYGTPKGAADAWNLVFVGYQTKSGWILLVFAVHEEHPNNLMPVAAVSKSL
V
>Dde_2486 excinuclease ABC, A subunit
MSKPCIHIEGARQHNLKNLTLDIPRDELVVVCGPSGSGKSTLAFDLVYAE
GQRRYVESLSAYARQFLPQMDKPDVDKIEGLSPAISLEQQSTSRNPRSTV
GTVTEVYDFLRVFYARLGMMYCPKCGKPIAARAADEIIADILSMEQGTKF
MVMAPLVEHQKGTHADRLKRLKAQGFVRIRLNGEVMTLDEVPALEKNKKH
SIDLVVDRLVLKDGIRGRLADSVELALRFGEGRLIVSIPGGAEQVHSTES
VCPTCKLSLPPLSPQLFSFNSPQGACPRCSGIGSIDYFEPNLLAPNKGLS
LVSGGLLPWKNPKVFERYKPALEALGKELGFAADTPFREYSEKAWNALFH
GEKETGWPGVVLLLERGMQLGSQWRDELSRYRQSHPCPACDGARLKPEAL
AVRVDDLNISQFCSLSITRALEWLRGRDFRQSQAVIAEPLLKELTHRLGF
MENVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGL
HPKDNERLIRTLRSLQKRGNTVLVVEHDEATILEADTVVELGPGSGMLGG
EIVFNGSVKSLLSDSDSLTARYLRGEMTIPLPEKRRQGSGSIVLRGVTTN
NLQDIDCEIPLGALTCVTGPSGSGKSSLVVDSLYKHIALHQSIKVDSPGQ
IRGIDGLENIERLVAIDQTPIGRTPRSNPATYTKIFDEIRNIFAMTPDAR
KRGYKPGRFSFNVRGGRCEACGGDGQIRVEMHFLPDIYVTCDVCGGKRYN
HETLEVRYKGMNIADVLGMTVRQAKAFFENYPALERRLAVLEDVGLEYLR
LGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLI
RVLHQLVDRGATVVVIEHNTDVIMAADTVIDLGPGGGEYGGRIVSSGTPE
EIMADPASVTGSFLKHEAVAVKAAGR
>Dde_1991 isopentenyl-diphosphate delta-isomerase
MRKTEKKTGNSPDAGTMHLVEVVDALGRPLLVMPAESVHRQGLNHKIILV
LLYDLQGRLYLQKRAASKTVYPGRWDLSATGHVQAGEAAMDAAVRELREE
LGVEPVSIKELCRVAACAETGHAFTTLFTTGRISAVPSPNPAEVAEGMFI
SADDLDATVNHFGEMLTPAVHWAYTNGFLFRRSA
>Dde_2865 Site-specific recombinase XerD-like
MAFKWIKTNIKGIRYREHDTRKHGIKKDRYYTIRYQRSGQRVEEGLGWAS
EGWTLDKAVATLAKLREAATTGEGETRLQEKRKAAEAQKALKEKKNITFA
TILAGYLEAGTEKKNTRVLAVQKGYGDKWLLPDLGPLPIRQVTAGHLEQI
QKQILAAGRSKQTAAHAIDLFRAAWNWAYKRELIEGRNPVTQMERIRPDG
SRERFFSAAELQSLLGWLHRKDIHTYRITLCAAHTGARLGELAHLTWDRV
NLPDRQINFIHTKSGVPRSVPMTPELHDMFSDLLMTMSSAKTSGIPLGTN
YTPAGLAGKIVFLTKARKPFFKEIEGRLRTDTPTAFRSALSALKLNEGHA
TAKTKLTFHCLRHTAATLLLSNGVDPVTVQNIMGWSTLKMLERYSHAIPA
TKRKAMEALSAALSGEG
>Dde_0314 Holliday junction resolvase YqgF
MKYLGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEE
RPAGVVVGLPLLAGGEETLITRQVRNFVARLRRRSSLPVYLVAEELSSFE
AGEDLREAGLSFREREAVVDQQAAVRILESFLNLPEDRRIPLEG
>Dde_0542 formamidopyrimidine-DNA glycosylase
MPELPEVETIARGLAPELTGRRITEVEVFNAGSVQGDREVFDACTPGRVI
AGVGRRGKLLLVHLEKERRQGAACRAVLDHRPAGDTPDMLAFHLRMSGRL
FIYGPEQLPGPHTRIIITLDSGRRLFFDDARKFGSCRALSPFSRPLWRFW
ATLGPEPLDVDRETFIEQFAERRKAVKALLLDQTVIAGVGNIYADESLFR
AGIRPDARPGDWTRDEAERRLGRLYDELREVLREAISECGSSIRDYRDAR
GDAGAFQNCFRVYGRSGMQCVSCRDALTTARVAGRTTVYCSNCQK
>Dde_1409 replicative DNA helicase
MDQVSDDLLRNVPPHSVEAEQAVLGGVFLRGQVFHTLVDIVNEDDFYLPA
HKTIFESFSELYRRNSPIDLITVAEFLKDQGKLEMAGGTVYLAELAESVI
SAANAEHYATLVRNKSLQRSLIGACSDIISNCYDASQDIEQLLDHSESSI
FSISERTTGKVFKSSKELVSKVFEDLEKRVERKELVTGVTTGYFRLDSMT
AGLQPSDLIIIAARPSMGKTAFVLNMAMRAAVNAGTPVAIYSLEMSMESL
MMRMLCAWGKVDLGKLRKGFLDDEDWAKLYAAADVLSRAPIYIDDTPAIT
TLDLRARTRRLHADKGVGMVVVDYLQLMRSSRRTDSRELEISDISRNLKA
LAKELNIPVIALSQLNRKVEERTNKRPMLSDLRESGAIEQDADIIMFVYR
DEVYNKRDDNPKKGVAEIIIGKQRNGPTGMAELAYIGSYTAFEDLAEVPP
PSEEFQ
>Dde_2196 DNA polymerase III, alpha subunit
MPQFVHLHCHTEYSLLDGAIRLKDLCEKAKEFDMSAVAITDHGNMYGAVY
FYQMAQKMGLKPIIGCEVYVAHGDHTDKTGDMAKKRYHLVLLAQNRTGYH
NLAKLVTRGFTEGFHYKPRVSKDLLRQYSEGIIALSACLAGEIPRALLNE
GMDRAIELAREYAEIYPDRFYLEVQSNGLKEQDELNDKLIELAGITGLPL
VATNDCHYLEKTDVEAHDTLLCIQTGAKVTDERRMRFETTELYYKSPDEM
AAAFAHVPEAIENTVKIAGQIDVTLDLGNYYFPNYELPEGMTLEDEFRKL
SHEGLQKRLEILPYRDQIDEPAYWQRLEKELDVICSMGFPGYFLIVQDFI
NWAKDNKIPVGPGRGSAAGSIVAWALKITNLDPIPYNLLFERFLNNERVS
MPDIDVDFCERRRGEVIQYVGRKYGEDSVAQITTFGKMKAKAVVRDVARA
LGLSFQDGDRIAKLIPEDLKMTIKKALDMEPDLKTLYTNDPQIRKLLDIS
MRLEGLSRHASTHAAGVVISDKPMFEYLPLYRDKKGGIVTQFDMKIVEKV
GLVKFDFLGLRTMTLVQDALDLIAMQGLTPPDLDTMSLEDKETYELYSRG
ETDGVFQVESSGMRQYLRMLRPSCFDDVIAMLALYRPGPLGSGMVDEFIK
RKHGEVAVTYPLESLKDCLRDTYGVIVYQEQVMQIAQIVANYTLGGADLL
RRAMGKKNAEAMAEERIKFTKGAKENNVPEAKATEIFDLMEKFAEYGFNK
SHSAAYALISYYTAYLKVHYPVEFMAALMTSEMNNQEKVLKYVACCKDMG
VEVLAPNVQISRREFSVLDGKVTYGLGGIKNVGDEAIREIVRAREEDGPF
QSMLDLCMRVNLRKVTKRVLENLIKSGACDCLGCTRQGMVAGLDTVVARA
QKKAKEKASNQISMFSVMEQEPQTCPGLGFDCPEQSMEEWDDEEKLRKEK
EALGFYLSSHPLQPYRKEIFRLRLTPLEDCREMGPEQSFKSAVLVTSIKE
ILTKKGHRMAFCQVEDLTASGECIFFPEAYAECREMLQSDQPLLLEAKIS
DKKDDEQPAKQDDEEEILKEIKVIGEAVIPLAKACHESEEPVTIELGLHQ
LHSSDLDSLKALLRKNKGTIPVNVQLVIEDSWCLLQLGPEYSIQPGPVFD
NDFNQWKMKGKTTHA
>Dde_3748 ISxac3 transposase
MLCRVVMVSPSGFYSWLKAPEDALMSRSESLRKAIRFYHQRSSGVYGYRK
IHKDIIEETTLRCCRETVRRAMKSDGLRSKVTRKHRYPANIEQIPRAAPN
VLARDFTASTPDQKWTADITYLWTNEGWLYLAVVLDLFSRRVVGWAMSE
>Dde_2874 hypothetical protein
MRCEFSSPPIKKVFRNSQTFSNLGYCDRQFLFSSIEEVQDHATNWLWTYN
NERPNMGIGGITPAQKLRMAA
>Dde_3398 site-specific recombinase, phage integrase family
MQNWHKTGTDFLGICAWEAVMTKTNWIKIDRGIRYKEHPTRKHGVKPDRY
FVLRHSSEGKMHQEALGWASEGVTLEKARIRLAELKEAKRTGRGATTLAS
QRRALREEEERNKQAQQAAKARFITSGSFWHEYYWPSQSHKAQGSLDAEK
ALWEKWLCPIIGQIPLATTTTKDLEEVKRRMMKAGRAPATIKYALALFSQ
MWTLAQNYGIADGTCPAKRLKLPARDNKRQRYLKPAEIDTLLSALRDKSQ
KTHDIALLSLECGLRFGEIANLRWEDVDLEHERLFIRDPKSRRNRFTYIN
QTIRSMLLLNRPDRAGDLIFPDYEGKPMARVSKTFGRVADELFNSDVTDT
RNRVCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPDYY
KALSTKE
>Dde_0001 chromosomal replication initiator protein DnaA
MLKKALRQHFRQSCTEQDLHRWFDPLDITLADEKRLEVRFPHRFFAEWFS
TQVQGRFESELNTFMGEGTTVEYTTGCCPVLSSSPLPPAAVSKKLSAPFG
REYTFETFISNKRNFFPVASARELARQEEEIRYNPFVLCGPAGSGKTHLL
RAIANELSKTVYKKHIFISTIDDLGTLFSNNGSGDPAQVRQQLSACHYLL
LDDLHRLREQPQLQDELTVLFNSFYDRQKQMVFTCPGKLSELDFLETGLR
SRLEWGLIVTMKPPDLEILVTFIQRQCKLHKLQLAKEHVFTLAQRFRDFR
HLQGVLNRLTAYRDLVNRTLADTDFEQVLSHTEAGAGRPLTADRIIALCA
GRFSLPPKDVTGDKRHQKVVLARQVAMYLCRELMGSSYPVLGRTFGGKDH
STAMYAVKKIKKMIDSDKTTRQLVTELKKQCLSGAE
>Dde_1384 conserved hypothetical protein
MNKDTKPLQDRYRREFVEVICPKCRQTQIIALPEETMPRCPTCRRDMIIK
EVLTEGKY
>Dde_0066 DNA-directed DNA polymerase
MSHASLTAKYRPQTFADVAGQETVKAILSRAAAENRVAPAYLFSGTRGVG
KTTIARIFAKALNCTRGPAAEPCNECEQCRKITQGMAVDVVEIDGASNRG
IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPANV
TFVMATTEPHKFPVTIVSRCQHFIFKRLTENGLAAHLVRILEREGTGYES
EAVKLIARRAAGSVRDSMSLLGQVLALGSDSLTVADARGILGLAGQELFF
RVADAIRRQDCVGVSTVLRDVLDQGLDLGFFLRELTGMWRNLFMLRQAGE
SALPLLDLPEEEARQWLEWAPQFALSHIHACWQMTLEGQRRVLNSLEPAM
ALELLLLNLAFMPRLLGMQQVSQTAPAPVPVAGDGPAPSGGSSGTPPAGG
HAAPPRSAPSVPSVPDPAGTSGRVADAAKPQQQAQADSTAPPPAEDAPPG
QSEPSGPATWEGFAQFCLQQNGQDGKSLRLLRQIKGELRDGVLHITPAYQ
MQRDRLTQPEMAAALETLARSYWGAGVTVAVGEPTEQRKAISDLRKELDD
HPAVQLLKEELGARVLAVRYMEKNNND
>Dde_2897 ISxcd1 transposase
MCFLHLRNVRGYRWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLTQPQ
RVNQSWSMDFMHDQLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIR
SLEQVIEWRGKPESIRCDNGPEYISNKLLTWAASQGIRIEHIQPGQPQQN
AYVERYNRTVRYDWLGQFLFSSIEEVQDHATNWLWTYNNERPNMGIGGIS
PAQKLRMAA
>Dde_2324 crossover junction endodeoxyribonuclease RuvC
MTTQGITVLGIDPGSRTTGWGIVREVSGVLTLVDCGAVRPRGDEFSDRLG
AIYHGLHEVIARHMPDEASVENVFTAKNAASALKLGQARGAAVAACAAHH
LPVASYAPTEIKKTIVGVGRAEKEQVSFMVARLLGVKGDWGPDTGDALAA
AICHLNMRRLRRLAAG
>Dde_0905 conserved hypothetical protein
MGMVTVVVDTREQEPYGFDSESVASVRKALPAGDYSIEGFETRVAVERKS
MADFVSTVIRGRKRFHKELEKLRHYDAACVVVEANYRDILGACYQSDAHP
NALIGTIASIIIDFGVPVYFCSDRQAACRFVEEFLMRFHRRFAQCQEKQT
PRQNSGEE
>Dde_1094 Ribonuclease H
MAARTKNGLTASASGMQSLLPHTLPHADPAGPRDSLYPAFFTGIDEAGRG
CLAGPVVAAAVILPPAGAPAAPHIAAALSGLTDSKKLSEKRRLTLEPAIK
SCAVRWGVGVVWPQVIDRINILQATYRAMSLAVRHLRGGGAAASMPAGLP
PVFLAVDGDKTIPGQVLQAVTGLSVPQEAIVGGDGCVMAISAASVLAKTF
RDRLMTALDKRYSGYGFATHKGYGTAAHIEAIRRLGPCRMHRLSFAKVKP
AAAPHAADQNTLW
>Dde_2058 histone-like DNA-binding protein
MTKADLVEKIAEKANLTKANAERSLNAFLESVEDVLVKEGKLTLTGFGTF
MVETRQERQGRNPRTGDPIVIPAAKVVKFRPGKLLKDAVK
>Dde_1799 histone-like DNA-binding protein
MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSF
KVKQYEGYSGRNPKTGEIVNVQPKQLPFFRAGKELKEFLND
>Dde_3213 histone-like DNA-binding protein
MNKSELVKTLAEDYNLSQDEAVAVVNTFFDSVREALVAGDRVEIRGFGSF
KVKEYKGYVGRNPKTGDSVKVSPKRLPVFRAGKEMKELVNP
>Dde_3747 ISRSO8-transposase orfB protein
MEAAIQLRRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCSMSRRGNCWD
NAVTESFFSKLKREWVRGKRYRTRNDARQDIFLYLEAFYNRKRRHAFLGY
QSPEAFEQLFYQAKQKQAA
>Dde_2039 transcription-repair coupling factor
MQFEEIAKRLGGGAAHSLHVARSGPATRARLAKELIDQGRSVVLVARNAD
ELAELRALATLFSPDESSEDVSLTVPAWERRWIIIPQHPAGSPGRTAWAA
RMASLYALNRRHMPQAVIVSLDNFIPKLPPPSLFDKHQLVLSTGEDMSPG
LVMEQAVEWGYTRTAYVTQPGEIALRGDILDIFPPGYAKPVRLDFFGDTL
EEIRLFDPSSQRSKGNLAEVTLIPTAPVVLEGAPRAEARSFWQRAAESGL
LPDGAPAALDVAAGEARATLLPGVYYQDAVFLERWLPPDAVYILPAERDV
AEALKQSARTWDDFSDQQEREYGIHQPAAMTIREAEDVTALFGQTVRVYF
EELVMGVEQKGENLPERGYEVFQDLFYEKEQSDRPWQTLIEALKEWSRTR
RQTVLSFGSARSRAKFLSLAQQDGISPYLRYDKSTAGVFALVSAFRKGAE
LQWDNSVVLGEDVLQPRTRQQRVRSGAFAGLKSYDDLEAGAMLVHRDYGV
ARFEGLLRMDLGGVSNDYLLLRYAGDDKLYLPVDRLSLVQRFKGPDGTAP
SLDKLGGAGWSASKSKARKAIERIAHDLVEMYAWRKVAKGYRYSPVNDMY
REFEASFGFEETPDQARAIEDVLDDMERAEPMDRLVCGDVGFGKTEVALR
AAFRAAMDGKQVALLCPTTVLAEQHFQTFRSRLGQFPVNVGMLSRFVSRQ
RQKEVLAACERGQIDILIGTHRILSDDVILPNLSLLILDEEQRFGVRHKE
RLKKMRRNVDVLTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVKTAL
IDRDPDILREVLLRELQREGQVFWVHNRVQGLERVAEYVRSLVPDARVGM
AHGQMSEKALEETMHKFWHAELDVLVCTAIVESGLDFPRANTLVVDQAQM
FGLGQLYQLRGRVGRSDRQAHAVFVVPDVDGVPELARKRLKIILEMDYLG
AGFQVAMEDLRLRGAGNILGEVQSGHMVKIGLDMYLEMLEEEVARLKGEP
VREDVQTELNIGITAHIPEGYMDDGRERLKYYKALSSAADGAAQESIELE
MRDRFGHFPQELQAFLGILRLKRYLGTLDVQKADIFADKVRLTWAENAGA
VSPATLVGWVAERAGRARLVPPAIMEIQLPEGSAFEDRLSALQSELELLR
AQ