Gene list
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COG category: Replication, recombination and repair
Organism: Thiomicrospira crunogena XCL-2, XCL-2
Number of genes found: 120
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| Thiomicrospira crunogena XCL-2, XCL-2 | ||||||||
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| Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Tcr_0578 | hypothetical protein | chromosome | CDS | 652084 | 747 | + | 0.461847 |
| NA | Tcr_1883 | DEAD/DEAH box helicase-like | chromosome | CDS | 2060218 | 1206 | + | 0.450249 |
| NA | Tcr_1180 | Histone-like DNA-binding protein | chromosome | CDS | 1288163 | 273 | + | 0.432234 |
| NA | Tcr_1191 | DNA gyrase, A subunit | chromosome | CDS | 1302138 | 2616 | + | 0.453364 |
| NA | Tcr_0866 | DNA repair protein RecN | chromosome | CDS | 944470 | 1668 | - | 0.47482 |
| NA | Tcr_1661 | integration host factor, alpha subunit | chromosome | CDS | 1814254 | 294 | - | 0.380952 |
| NA | Tcr_1698 | Inactivated superfamily I helicase-like | chromosome | CDS | 1855668 | 2769 | - | 0.470928 |
| NA | Tcr_0003 | DNA replication and repair protein RecF | chromosome | CDS | 2853 | 1089 | + | 0.484848 |
| NA | Tcr_0409 | Phage integrase | chromosome | CDS | 459562 | 954 | + | 0.493711 |
| NA | Tcr_1594 | DNA mismatch repair protein MutS | chromosome | CDS | 1744852 | 2616 | + | 0.477829 |
| NA | Tcr_0106 | serine/threonine protein kinase | chromosome | CDS | 136378 | 1365 | + | 0.415385 |
| NA | Tcr_1048 | chromosomal replication initiator protein DnaA | chromosome | CDS | 1125539 | 714 | + | 0.404762 |
| NA | Tcr_0779 | DEAD/DEAH box helicase-like | chromosome | CDS | 853629 | 1338 | - | 0.470105 |
| NA | Tcr_0720 | TatD-related deoxyribonuclease | chromosome | CDS | 788826 | 774 | + | 0.444444 |
| NA | Tcr_0651 | Tyrosine recombinase XerD | chromosome | CDS | 727742 | 894 | + | 0.444072 |
| NA | Tcr_2009 | DEAD/DEAH box helicase-like | chromosome | CDS | 2214284 | 1725 | + | 0.45971 |
| NA | Tcr_1859 | Integrase, catalytic region | chromosome | CDS | 2035034 | 816 | + | 0.469363 |
| NA | Tcr_0196 | DNA topoisomerase | chromosome | CDS | 230244 | 2508 | + | 0.472089 |
| NA | Tcr_0719 | DNA-directed DNA polymerase | chromosome | CDS | 787819 | 978 | + | 0.43047 |
| NA | Tcr_0120 | A/G-specific adenine glycosylase | chromosome | CDS | 153051 | 1053 | + | 0.470085 |
| NA | Tcr_1807 | DNA primase | chromosome | CDS | 1983723 | 1731 | - | 0.456384 |
| NA | Tcr_0892 | crossover junction endodeoxyribonuclease RuvC | chromosome | CDS | 972407 | 519 | + | 0.44316 |
| NA | Tcr_1000 | NUDIX hydrolase | chromosome | CDS | 1077045 | 498 | + | 0.447791 |
| NA | Tcr_1858 | Transposase IS3/IS911 | chromosome | CDS | 2034672 | 309 | + | 0.456311 |
| NA | Tcr_0194 | DNA processing protein DprA, putative | chromosome | CDS | 227950 | 1134 | + | 0.485009 |
| NA | Tcr_0001 | chromosomal replication initiator protein DnaA | chromosome | CDS | 69 | 1404 | + | 0.444444 |
| NA | Tcr_1828 | Holliday junction resolvase YqgF | chromosome | CDS | 2004380 | 405 | + | 0.466667 |
| NA | Tcr_0141 | hypothetical protein | chromosome | CDS | 174504 | 339 | - | 0.451327 |
| NA | Tcr_1932 | conserved hypothetical protein | chromosome | CDS | 2120671 | 618 | - | 0.466019 |
| NA | Tcr_1168 | transcription-repair coupling factor | chromosome | CDS | 1270543 | 3480 | - | 0.439655 |
| NA | Tcr_0375 | hypothetical protein | chromosome | CDS | 423541 | 1467 | - | 0.364008 |
| NA | Tcr_2153 | ATP-dependent DNA helicase RecG | chromosome | CDS | 2376348 | 2073 | + | 0.478534 |
| NA | Tcr_1313 | conserved hypothetical protein | chromosome | CDS | 1429772 | 507 | - | 0.43787 |
| NA | Tcr_0948 | DEAD/DEAH box helicase-like | chromosome | CDS | 1022792 | 1407 | - | 0.46624 |
| NA | Tcr_0044 | DNA polymerase I | chromosome | CDS | 52769 | 2820 | + | 0.448936 |
| NA | Tcr_1336 | conserved hypothetical protein | chromosome | CDS | 1450926 | 393 | - | 0.407125 |
| NA | Tcr_1209 | exodeoxyribonuclease VII, large subunit | chromosome | CDS | 1321073 | 1569 | - | 0.439133 |
| NA | Tcr_0440 | transcriptional regulator, Fis family | chromosome | CDS | 493697 | 264 | - | 0.393939 |
| NA | Tcr_1852 | Integrase, catalytic region | chromosome | CDS | 2028543 | 759 | - | 0.44137 |
| NA | Tcr_0832 | Phage integrase | chromosome | CDS | 904415 | 1026 | - | 0.423977 |
| NA | Tcr_1853 | Transposase IS3/IS911 | chromosome | CDS | 2029436 | 303 | - | 0.412541 |
| NA | Tcr_0212 | UvrD/REP helicase | chromosome | CDS | 251532 | 2034 | - | 0.470993 |
| NA | Tcr_1695 | Protein of unknown function UPF0102 | chromosome | CDS | 1851012 | 363 | + | 0.424242 |
| NA | Tcr_0658 | C-5 cytosine-specific DNA methylase | chromosome | CDS | 735114 | 1947 | - | 0.482794 |
| NA | Tcr_0002 | DNA polymerase III, beta subunit | chromosome | CDS | 1648 | 1107 | + | 0.444444 |
| NA | Tcr_1996 | ATP-dependent DNA helicase RecQ | chromosome | CDS | 2195419 | 1890 | - | 0.469841 |
| NA | Tcr_2072 | hypothetical protein | chromosome | CDS | 2288544 | 2691 | + | 0.361576 |
| NA | Tcr_0736 | DNA repair protein RecO | chromosome | CDS | 809134 | 741 | + | 0.442645 |
| NA | Tcr_1754 | excinuclease ABC, B subunit | chromosome | CDS | 1914956 | 2037 | - | 0.454099 |
| NA | Tcr_1410 | Phage integrase | chromosome | CDS | 1521355 | 1191 | + | 0.366919 |
| NA | Tcr_2076 | Integrase, catalytic region | chromosome | CDS | 2295846 | 816 | + | 0.469363 |
| NA | Tcr_0323 | conserved hypothetical protein | chromosome | CDS | 361477 | 783 | - | 0.408685 |
| NA | Tcr_0128 | UvrD/REP helicase | chromosome | CDS | 160746 | 2226 | + | 0.484277 |
| NA | Tcr_2121 | Phage integrase | chromosome | CDS | 2343502 | 1302 | - | 0.40937 |
| NA | Tcr_0384 | DNA topoisomerase IV, A subunit | chromosome | CDS | 432874 | 2229 | + | 0.471063 |
| NA | Tcr_0324 | excinuclease ABC, A subunit | chromosome | CDS | 362344 | 2808 | - | 0.478989 |
| NA | Tcr_1120 | Exonuclease | chromosome | CDS | 1208873 | 624 | + | 0.392628 |
| NA | Tcr_0088 | Phage integrase | chromosome | CDS | 114857 | 1284 | - | 0.373832 |
| NA | Tcr_0529 | DNA-directed DNA polymerase | chromosome | CDS | 592288 | 2091 | + | 0.470588 |
| NA | Tcr_1642 | Integrase, catalytic region | chromosome | CDS | 1795156 | 816 | + | 0.469363 |
| NA | Tcr_0328 | Phage integrase | chromosome | CDS | 368408 | 1185 | + | 0.405907 |
| NA | Tcr_0663 | NAD-dependent DNA ligase (contains BRCT domain type II)-like | chromosome | CDS | 739995 | 891 | + | 0.38945 |
| NA | Tcr_0928 | Ribonuclease H | chromosome | CDS | 1005816 | 438 | + | 0.47032 |
| NA | Tcr_0893 | Holliday junction DNA helicase RuvA | chromosome | CDS | 972935 | 603 | + | 0.451078 |
| NA | Tcr_1239 | DNA ligase, NAD-dependent | chromosome | CDS | 1353289 | 2019 | - | 0.45369 |
| NA | Tcr_2075 | Transposase IS3/IS911 | chromosome | CDS | 2295484 | 309 | + | 0.456311 |
| NA | Tcr_1673 | Competence protein ComEA helix-hairpin-helix region | chromosome | CDS | 1826506 | 264 | - | 0.363636 |
| NA | Tcr_2200 | methylated-DNA--protein-cysteinemethyltransferase | chromosome | CDS | 2426233 | 324 | - | 0.459877 |
| NA | Tcr_1713 | Exonuclease | chromosome | CDS | 1873705 | 882 | + | 0.473923 |
| NA | Tcr_2125 | Deoxyribodipyrimidine photolyase | chromosome | CDS | 2346649 | 1440 | + | 0.475694 |
| NA | Tcr_1115 | DNA polymerase III, alpha subunit | chromosome | CDS | 1199151 | 3477 | + | 0.45614 |
| NA | Tcr_1592 | recA protein | chromosome | CDS | 1742885 | 1044 | - | 0.443487 |
| NA | Tcr_0656 | Phage integrase | chromosome | CDS | 732761 | 1119 | - | 0.413762 |
| NA | Tcr_1756 | NUDIX hydrolase | chromosome | CDS | 1918531 | 552 | - | 0.460145 |
| NA | Tcr_1200 | hypothetical protein | chromosome | CDS | 1313544 | 375 | + | 0.336 |
| NA | Tcr_1030 | endonuclease III | chromosome | CDS | 1106131 | 633 | - | 0.436019 |
| NA | Tcr_0083 | hypothetical protein | chromosome | CDS | 104412 | 3705 | - | 0.34305 |
| NA | Tcr_0124 | nuclease (SNase-like) | chromosome | CDS | 157083 | 828 | - | 0.411836 |
| NA | Tcr_0327 | single-strand binding protein | chromosome | CDS | 367628 | 606 | + | 0.470297 |
| NA | Tcr_1269 | Helicase c2 | chromosome | CDS | 1384473 | 1911 | - | 0.430141 |
| NA | Tcr_1015 | DEAD/DEAH box helicase-like | chromosome | CDS | 1093814 | 1182 | - | 0.485618 |
| NA | Tcr_2052 | exodeoxyribonuclease III | chromosome | CDS | 2266265 | 822 | + | 0.461071 |
| NA | Tcr_1705 | HEAT | chromosome | CDS | 1866465 | 1080 | + | 0.442593 |
| NA | Tcr_1672 | ATP dependent DNA ligase, central | chromosome | CDS | 1825637 | 801 | - | 0.443196 |
| NA | Tcr_0329 | Phage integrase | chromosome | CDS | 369602 | 1542 | + | 0.391699 |
| NA | Tcr_0950 | ATP-dependent helicase HrpA | chromosome | CDS | 1025064 | 4029 | + | 0.445768 |
| NA | Tcr_0938 | hypothetical protein | chromosome | CDS | 1013452 | 207 | + | 0.376812 |
| NA | Tcr_0218 | Exonuclease | chromosome | CDS | 257501 | 1083 | - | 0.45614 |
| NA | Tcr_0481 | DNA polymerase III, delta subunit | chromosome | CDS | 539021 | 1017 | + | 0.465093 |
| NA | Tcr_2013 | hypothetical protein | chromosome | CDS | 2218774 | 369 | - | 0.390244 |
| NA | Tcr_1749 | DNA polymerase III chi subunit, HolC | chromosome | CDS | 1910231 | 441 | + | 0.453515 |
| NA | Tcr_1641 | Transposase IS3/IS911 | chromosome | CDS | 1794794 | 309 | + | 0.456311 |
| NA | Tcr_1084 | DNA mismatch repair protein MutL | chromosome | CDS | 1164844 | 1893 | + | 0.472266 |
| NA | Tcr_2119 | putative transposase | chromosome | CDS | 2342726 | 219 | - | 0.30137 |
| NA | Tcr_2092 | hypothetical protein | chromosome | CDS | 2309513 | 2691 | + | 0.361576 |
| NA | Tcr_1199 | integration host factor, beta subunit | chromosome | CDS | 1313185 | 327 | + | 0.373089 |
| NA | Tcr_0362 | uracil-DNA glycosylase | chromosome | CDS | 411006 | 699 | - | 0.446352 |
| NA | Tcr_0859 | DNA-directed DNA polymerase | chromosome | CDS | 935784 | 1353 | + | 0.466371 |
| NA | Tcr_0597 | ribonuclease T | chromosome | CDS | 674070 | 624 | - | 0.439103 |
| NA | Tcr_1103 | Excinuclease ABC, C subunit-like | chromosome | CDS | 1187379 | 264 | + | 0.405303 |
| NA | Tcr_1145 | excinuclease ABC, C subunit | chromosome | CDS | 1240816 | 1842 | + | 0.440282 |
| NA | Tcr_0012 | DNA gyrase, B subunit | chromosome | CDS | 13957 | 2442 | + | 0.457002 |
| NA | Tcr_0531 | recombination protein RecR | chromosome | CDS | 594740 | 594 | + | 0.469697 |
| NA | Tcr_1360 | replicative DNA helicase | chromosome | CDS | 1475747 | 1422 | - | 0.45429 |
| NA | Tcr_0377 | Integrase, catalytic region | chromosome | CDS | 426006 | 1911 | - | 0.377289 |
| NA | Tcr_1921 | formamidopyrimidine-DNA glycosylase | chromosome | CDS | 2104399 | 843 | + | 0.44484 |
| NA | Tcr_1697 | UvrD/REP helicase | chromosome | CDS | 1852123 | 3549 | - | 0.474782 |
| NA | Tcr_0930 | DNA polymerase III, epsilon subunit | chromosome | CDS | 1006901 | 696 | - | 0.46408 |
| NA | Tcr_1987 | primosomal protein N' (replication factor Y) | chromosome | CDS | 2184438 | 2325 | - | 0.487742 |
| NA | Tcr_1358 | Nucleoside diphosphate pyrophosphatase | chromosome | CDS | 1473989 | 609 | - | 0.430213 |
| NA | Tcr_0894 | Holliday junction DNA helicase RuvB | chromosome | CDS | 973755 | 1023 | + | 0.45259 |
| NA | Tcr_1647 | transposase | chromosome | CDS | 1799893 | 1851 | - | 0.421934 |
| NA | Tcr_0766 | AAA ATPase | chromosome | CDS | 836036 | 1362 | + | 0.496329 |
| NA | Tcr_0321 | TatD-related deoxyribonuclease | chromosome | CDS | 359997 | 765 | + | 0.407843 |
| NA | Tcr_1248 | Phosphoesterase, RecJ-like | chromosome | CDS | 1362341 | 1794 | + | 0.473244 |
| NA | Tcr_0364 | DNA topoisomerase IV, B subunit | chromosome | CDS | 412468 | 1887 | + | 0.472708 |
| NA | Tcr_1917 | DNA repair protein RadC | chromosome | CDS | 2099859 | 714 | + | 0.466387 |
| NA | Tcr_1272 | Ribonuclease H | chromosome | CDS | 1387931 | 624 | - | 0.434295 |
| NA | Tcr_0554 | ATP-dependent helicase HrpB | chromosome | CDS | 622087 | 2547 | + | 0.462112 |
| NA | Tcr_1102 | conserved hypothetical protein | chromosome | CDS | 1185880 | 1317 | + | 0.383447 |
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