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2024-05-15 06:13:55

Gene list

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COG category: Replication, recombination and repair
Organism: Chlorobium chlorochromatii CaD3, CaD3

Number of genes found: 121

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Chlorobium chlorochromatii CaD3, CaD3
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Cag_1148 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1543585 432 + 0.476852
NA Cag_0328 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS365337 2121 + 0.489863
NA Cag_1981 transposaseSubName: Full=Transposase; chromosome CDS2513293 1236 - 0.402913
NA Cag_1099 DNA modification methylase-likeSubName: Full=DNA modification methylase-like protein; EC=2.1.1.113; chromosome CDS1486323 1242 + 0.309984
NA Cag_0164 Crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS185205 579 - 0.511226
NA Cag_1580 transposaseSubName: Full=Transposase; chromosome CDS2061805 1236 + 0.410194
NA Cag_1802 Methylpurine-DNA glycosylase (MPG)RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS2324131 612 - 0.49183
NA Cag_1415 DNA helicase IISubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; chromosome CDS1884000 2232 - 0.474462
NA Cag_1005 Protein of unknown function DUF48RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS1344306 1032 - 0.448643
NA Cag_1007 CRISPR-associated protein TM1801SubName: Full=CRISPR-associated protein, Csd2 family; chromosome CDS1346002 843 - 0.398576
NA Cag_1189 RecR proteinRecName: Full=Recombination protein RecR; chromosome CDS1583846 615 - 0.486179
NA Cag_0086 transposaseSubName: Full=Transposase; chromosome CDS95231 1236 + 0.402913
NA Cag_1513 DNA repair protein RadCRecName: Full=UPF0758 protein Cag_1513; chromosome CDS1987113 669 + 0.433483
NA Cag_1882 Transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS2390726 3300 - 0.470909
NA Cag_0911 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1243727 1686 + 0.310795
NA Cag_1438 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1905723 555 + 0.468468
NA Cag_0599 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS702757 834 - 0.314149
NA Cag_1041 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1409777 291 + 0.439863
NA Cag_0275 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS302186 2004 + 0.513972
NA Cag_0457 DNA recombination protein, RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS535712 615 + 0.474797
NA Cag_0528 AP endonuclease, family 2RecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS616283 849 - 0.47232
NA Cag_0554 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS658051 534 - 0.365169
NA Cag_0682 transposaseSubName: Full=Transposase; chromosome CDS952670 1149 - 0.506527
NA Cag_1004 Protein of unknown function DUF196RecName: Full=CRISPR-associated endoribonuclease Cas2; EC=3.1.-.-; chromosome CDS1343970 291 - 0.388316
NA Cag_0202 transposaseSubName: Full=Transposase; chromosome CDS230436 1236 + 0.402913
NA Cag_1767 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS2284284 1059 + 0.496695
NA Cag_1025 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1380089 1518 - 0.322134
NA Cag_0603 RecJ exonucleaseSubName: Full=Exonuclease RecJ; EC=3.1.-.-; chromosome CDS706047 1707 + 0.491506
NA Cag_0543 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS646895 2061 + 0.498787
NA Cag_0181 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS203930 603 - 0.356551
NA Cag_1559 transposase for IS1663SubName: Full=Transposase for IS1663; chromosome CDS2039958 1056 - 0.355114
NA Cag_1317 MutS 1 proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1783423 2622 + 0.490084
NA Cag_0362 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS414466 276 + 0.427536
NA Cag_0890 Methylated-DNA-(protein)-cysteineS-methyltransfe raseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS1221177 516 + 0.494186
NA Cag_0832 transposaseSubName: Full=Transposase; chromosome CDS1158648 1236 + 0.402913
NA Cag_1347 TatD-related deoxyribonucleaseSubName: Full=TatD-related deoxyribonuclease; chromosome CDS1814533 807 + 0.498141
NA Cag_1993 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS2530005 621 - 0.479871
NA Cag_0002 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS2113 1125 + 0.399111
NA Cag_1392 putative type II DNA modification enzyme (methyltransferase)SubName: Full=Putative type II DNA modification enzyme (Methyltransferase); EC=2.1.1.72; chromosome CDS1855303 1056 + 0.326705
NA Cag_1527 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2006216 600 + 0.421667
NA Cag_0847 Helicase RecD/TraASubName: Full=Helicase RecD/TraA; EC=3.1.11.5; chromosome CDS1177760 2217 - 0.498872
NA Cag_1341 Excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1808936 1890 + 0.454497
NA Cag_0003 RecF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS3251 1095 + 0.386301
NA Cag_0095 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS110399 459 + 0.411765
NA Cag_0179 DNA polymerase ASubName: Full=DNA polymerase A; EC=2.7.7.7; chromosome CDS200023 2775 - 0.481802
NA Cag_1387 ATP-dependent endonuclease of the OLD family-likeSubName: Full=ATP-dependent endonuclease of the OLD family-like protein; chromosome CDS1851699 1653 + 0.315185
NA Cag_0809 probable transposaseSubName: Full=Probable transposase; chromosome CDS1133897 462 + 0.290043
NA Cag_1625 Helix-hairpin-helix DNA-binding, class 1SubName: Full=Helix-hairpin-helix DNA-binding, class 1; chromosome CDS2124104 519 - 0.458574
NA Cag_0088 DNA gyrase, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS97415 2487 + 0.455167
NA Cag_0699 DNA mismatch repair protein MutS-likeRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS970440 2382 + 0.52267
NA Cag_1966 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2496300 696 - 0.425287
NA Cag_0934 ATPaseSubName: Full=ATPase; EC=2.7.7.7; chromosome CDS1269562 1191 - 0.466835
NA Cag_1402 DNA modification methylase-likeSubName: Full=DNA modification methylase-like protein; EC=2.1.1.72; chromosome CDS1866280 795 - 0.327044
NA Cag_1509 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1977873 963 - 0.442368
NA Cag_1123 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1514844 597 + 0.400335
NA Cag_0014 Holliday junction resolvase YqgFRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS16209 423 + 0.491726
NA Cag_0788 transposaseSubName: Full=Transposase; chromosome CDS1106516 1236 - 0.403722
NA Cag_0029 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS31358 1914 - 0.468652
NA Cag_1796 AnkyrinSubName: Full=Ankyrin; chromosome CDS2316188 3144 + 0.463422
NA Cag_0321 Exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; chromosome CDS356170 1224 - 0.464869
NA Cag_1772 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2288369 1722 - 0.311266
NA Cag_0770 Exodeoxyribonuclease V, alpha subunitSubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5; chromosome CDS1087346 1740 + 0.531609
NA Cag_0368 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS423147 864 - 0.417824
NA Cag_1214 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1613701 285 - 0.442105
NA Cag_0507 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS589877 1845 + 0.254201
NA Cag_1969 Recombination protein O, RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2501729 852 - 0.484742
NA Cag_1301 Excinuclease ABC, A subunitSubName: Full=Excinuclease ABC subunit A; chromosome CDS1766885 2829 + 0.489219
NA Cag_0876 DNA photolyase, class 2SubName: Full=Deoxyribodipyrimidine photo-lyase type II; EC=4.1.99.3; chromosome CDS1208588 1380 + 0.553623
NA Cag_0416 Endonuclease III/NthRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS487980 627 - 0.480064
NA Cag_1749 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2266628 1725 + 0.467246
NA Cag_1992 Protein of unknown function UPF0102RecName: Full=UPF0102 protein Cag_1992; chromosome CDS2529619 390 - 0.451282
NA Cag_0848 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS1179976 309 - 0.404531
NA Cag_1363 serine/threonine protein kinaseSubName: Full=Serine/threonine protein kinase; chromosome CDS1828351 1437 + 0.309673
NA Cag_1545 NUDIX/MutT family proteinSubName: Full=NUDIX/MutT family protein; chromosome CDS2025635 456 - 0.491228
NA Cag_1006 Protein of unknown function DUF83SubName: Full=CRISPR-associated exonuclease, Cas4 family; chromosome CDS1345334 648 - 0.458333
NA Cag_1778 DNA polymerase III, delta subunit, putativeSubName: Full=DNA polymerase III, delta subunit, putative; EC=2.7.7.7; chromosome CDS2295628 1176 - 0.491497
NA Cag_1744 ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS2262878 441 + 0.453515
NA Cag_1628 C-5 cytosine-specific DNA methylaseRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS2126357 1080 + 0.322222
NA Cag_0769 Exodeoxyribonuclease V, beta subunitSubName: Full=DNA helicase/exodeoxyribonuclease V, beta subunit; EC=3.1.11.5; chromosome CDS1083474 3624 + 0.518212
NA Cag_1447 SMF proteinSubName: Full=SMF protein; chromosome CDS1914605 1158 + 0.505181
NA Cag_1529 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2007135 579 + 0.373057
NA Cag_0042 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS47090 1905 - 0.36168
NA Cag_0075 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS83182 2397 - 0.479349
NA Cag_0332 type II DNA modification methyltransferase M.TdeIIISubName: Full=Type II DNA modification methyltransferase M.TdeIII; chromosome CDS370767 1593 + 0.323917
NA Cag_0893 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1224229 3570 + 0.484314
NA Cag_0314 Excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS349424 2046 + 0.517107
NA Cag_0658 transposaseSubName: Full=Transposase; chromosome CDS931743 1236 - 0.410194
NA Cag_1695 reverse transcriptase family proteinSubName: Full=Reverse transcriptase family protein; chromosome CDS2200966 1035 + 0.418357
NA Cag_0145 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS162849 1935 + 0.453747
NA Cag_1063 transposaseSubName: Full=Transposase; chromosome CDS1445420 1236 + 0.402913
NA Cag_1296 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1759852 954 + 0.432914
NA Cag_0708 transposaseSubName: Full=Transposase; chromosome CDS982852 1236 - 0.403722
NA Cag_0223 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS252467 519 + 0.435453
NA Cag_0241 RecA DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS272459 1062 + 0.480226
NA Cag_0765 transposaseSubName: Full=Transposase; chromosome CDS1079123 1236 - 0.402913
NA Cag_1116 DEAD/DEAH box helicase-likeRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS1505789 1923 + 0.49038
NA Cag_1136 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1531344 579 - 0.336788
NA Cag_0626 ATPaseSubName: Full=Recombination protein MgsA; chromosome CDS899851 1362 + 0.488253
NA Cag_1507 transposaseSubName: Full=Transposase; chromosome CDS1976160 1236 + 0.402913
NA Cag_0224 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; chromosome CDS253059 1041 + 0.432277
NA Cag_1137 HhH-GPDSubName: Full=HhH-GPD; chromosome CDS1531982 846 - 0.518913
NA Cag_0597 transposaseSubName: Full=Transposase; chromosome CDS699769 1236 + 0.402913
NA Cag_0748 transposaseSubName: Full=Transposase; chromosome CDS1054528 1236 + 0.410194
NA Cag_1609 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2102122 1566 - 0.355683
NA Cag_2007 DNA-directed DNA polymerase BRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS2544884 2367 + 0.421631
NA Cag_0763 Exodeoxyribonuclease V, RecC subunitSubName: Full=DNA helicase/exodeoxyribonuclease V, gamma subunit; EC=3.1.11.5; chromosome CDS1074992 3384 + 0.516253
NA Cag_0828 Primosomal protein nSubName: Full=Primosomal protein n; chromosome CDS1154285 2448 + 0.502451
NA Cag_0154 Excinuclease ABC, A subunitSubName: Full=Excinuclease ABC subunit A; chromosome CDS171329 2856 - 0.489496
NA Cag_1118 Tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerC; chromosome CDS1508225 915 - 0.444809
NA Cag_0548 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS652586 1983 - 0.486132
NA Cag_1872 exodeoxyribonuclease, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS2379971 249 + 0.437751
NA Cag_0564 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS669531 309 + 0.407767
NA Cag_0555 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS658585 384 - 0.361979
NA Cag_1694 HRDCSubName: Full=HRDC; chromosome CDS2200530 462 + 0.409091
NA Cag_1630 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2128507 690 + 0.26087
NA Cag_1918 transposaseSubName: Full=Transposase; chromosome CDS2435513 1236 - 0.402913
NA Cag_1017 HhH-GPDSubName: Full=HhH-GPD; chromosome CDS1361039 939 + 0.417465
NA Cag_1093 putative exonucleaseSubName: Full=Putative exonuclease; chromosome CDS1478952 1305 - 0.521839
NA Cag_1608 DnaB helicaseSubName: Full=DnaB helicase; chromosome CDS2100167 1536 - 0.475911
NA Cag_1762 site-specific recombinase, phage/XerD familyRecName: Full=Tyrosine recombinase XerC; chromosome CDS2278902 1017 + 0.447394
NA Cag_0001 chromosomal replication initiator protein, DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS346 1479 + 0.394861