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# Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2

>t4338 phage integrase
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKP
WLGEKEDRRHLSEVIEQWHSLYGQTLADPKRLLAKLSIICNGLGDPIASE
LTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKK
LGHWPAPNPLAGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIA
KICLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPISQELYDELP
KNRGKLFTPCRKSFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL
VLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
>t4520 protein kinase
MRKTKMKINHVLPERYSLKSTELGGGMGDILICKDNHLDRDVIVKLLKDG
EEERRLLDEQKALLKLRSKHVVQLYDLIDITVSEKTKKGLVLEYINGVDL
NYNPSESHPEKLKKLWQIACGLSDIHSAKVIHRDIKPNNIRVDENKIVKI
LDFGLARTSGTEAFTHSVIGTLGYMAPELWKRKNISFDQKIDVYAYGVLV
LDLFGIEKPDELYEHPPAAITNIPELGKILPKDLARTFISCLSHDKYARP
AMSSVRDQIAKYLLKDRHRALFVLNGKKYEINAKNKSVTITWGTSGSMEI
VYDGFDFKVGNFSGSATINNQQVITNKVFPSCSVITLINEKSRSFVTFDI
SRPEVIS
>t1685 putative MutT-family protein
MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETLAQAAAR
ELWEETGITAQPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATAPHDND
IDCCRWVSADEILNAPNLRSPLVAESIRSYQTGQRYPLSIVGEFNWPFTE
GVK
>t3948 putative membrane protein
MSKPPLFFIIIIALIVVAASFRFVQQRREKAANEAAPLQQKQVVVSNKRE
KPVNDRRSRQQEVSPAGTSMRYEASFKPLNGGLEKTFRLQAQQYHALTVG
DQGTLSYKGTRFVGFVSRTPDNE
>t4492 putative membrane protein
MVRARFTEEQIADFLQQSKNGVPNKALCEEYGFSNSTLRRWQEKHAESIR
QELKQIESTAKIVFLCFIIAAILLTLMFPKPTAALAIPPYLVYCISYIRR
FRRISAKHIQRWDISSSRSGSGAENVFYKLSWTFLFFMPAYSILQLLE
>t3106 conserved hypothetical protein
MRKSDNLPVTFTKSDVEIIARETRYRGFFSLDVYRFRHRLFNGEMSGEVK
REIFERGHAAVLLPFDPERDEVVLVEQIRIAAYDTSVTPWLLEMVAGMIE
EGETIEAVARREAMEEAGLTVGRTRPVISYLASPGGTSERSSILVGEVDA
TTAVGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAAAVIALQWLQLH
HQELKNEWKK
>t4227 DNA helicase
MSHKSVSAVSMLFNVGAETGVLGGLMLDNDRWDEIAPLLNSGDFYYGQHQ
IIFREIERLVSAGLPIDLITLSESMERKDLLERCGGVAYLAELSKNTPSA
ANIVAYAEIVREYSRKRRLVKLGHELHQLASVGDADIPGLIEKAEKQLFS
LAQQACDPDICLSVTTQVADTVSWLESVSGGSGVTGTATGFAELDEKTCG
WQDGDLILLGARPSMGKTAEALKHAVAALEGSPGKTVQFYSIEMPTQQLI
MRLLSMLARVPFDNLRKGLLSEGQWSLLADAVAKLTSWEGRLLIDDTSYQ
TPSTLRISARRNVRKYGQPSLILVDYLQLMSCPGRENRTQEIQEISRSLK
SLAKEIRCPVAALSQLNRSVEQRQDKRPMVSDLRDSGSLEQDADVIMFLY
RDEVYNEHSPDRGIAEIILGKQRQGPLGTVKVRFEGEYMRFSEYHLGYGE
VSYG
>t0568 conserved hypothetical protein
MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEAL
RREIREELGEQLILSDITPWTFRDDIRVKTYADGRQEEIYMIYLIFDCVS
ANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL
>t2424 hypothetical protein
MANLHITLELKNADGMATEETLMIPPFGLNTLGIDMQNHDVDPLITPYDL
PLYTQDFCHGIGDIHFTLKSATATINGKNVDLLKADSVHFLDKE
>t1180 putative MutT-family protein
MIKKLDVVAAIIERDGKILLAQRPVHADQAGLWEFAGGKVEPGETQPQAL
IRELREELGIDATPGVYIASHQRDVSGRRIHLHAWHVPAFNGLIRALEHQ
ALAWCTPEEALEYPLAPADIPLLQAFMALRDARLTDLC
>t3009 conserved hypothetical protein
MSDTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLK
EWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLST
VEARSGLFERGGYRALNKGKVDSASAVIILESYFEQGY
>t3400 probable bacteriophage integrase
MAVRKLTTGKWLCECYPAGRSGRRVRKQFATKGEALAFERHTMEETESKP
WLGESVDRRTLKDVVELWFKLHGKSLTAGQHVYDKLLLMVDALGNPLATD
LTSKMFAHYRDKRLTGEIYFSEKWKKGASPVTINLEQSYLSSVFSELSRL
GEWSYPNPLENMRKFTIAEKEMAWLTHEQIVELLADCKRQDPILALVVKI
CLSTGARWREAVNLTRSQVTKYRITFVRTKGKKNRSIPISKELYEEIMAL
DGFNFFTDCYFQFLSVMEKTSIVLPRGQLTHVLRHTFAAHFMMSGGNILA
LQKILGHHDIKMTMRYAHLAPDHLETALRFNPLATLPSGDKVAAAVGITP
>t1384 hypothetical protein
MNAALTERLVYVARAARDAGHGKRGAIYDAACAELGMSRATLLRRLKEVS
VTDKRKKRADAGRSALTRDEAALISATLREATRKNGKRLYSIADAVETLR
ANGFISAGRTDETTGEFFPLSEDAISRALRNYGLHPEQLDAPAPYTEVAS
LHPNHVWQIDASLCTLYYLSNGHKGLQVMDSAKFYKNKPANLARIASDRV
WSYEITDHASGWIYVEYVTGAESGENLCSVLINAMQERGGADVLHGVPKI
LYLDPGSANTAGMTKNMCRSLGIDLIAHKPHNARATGQVEKARDIIERKL
EPGLKFRPVHSLEELNALAAKWRSHFNATAVHSRHGKTRTDIWLKITAEQ
LKKAPSVEVCRELAVAAPELRKVTPKLRVSFRGTEFDVSTVPGVLVGEKL
MITRNPWRSDVAQVVLTGEDGHETFFLVEEVRKNEFGFAEGAAVFGESYK
ALPETPAQMAAKETEALVTGTDNAADAAAARKAKALPFGGRLDPYKHIDD
ATLPACIPKRGQASDVRGPRTEQRPMTHVEAAKALRGKFSANGLTWTPEH
YRQLTAQYPDGVPEAALDEVMATLTTPARSSVISIVNGN
>t2647 hypothetical protein
MMGLGTFPALSLADARRLRADYLSLLANGIDPQIQAEIAEEQQQIAQDSI
FTTVAANWFQLKSKSVTPDYARDIWRSLEKDVFPAVGELPVQQIKARTLV
EALEPVKARGALETVRRLVQRINEIMIFAVNTGLIDANPASGVGMAFEKP
KKQNMPTLRPEELPNLMRSLAMSNLSVSTRCLIEWQLLTLVRPSEASGTQ
WAEIDLENKLWTIPAGRMKAKREHIVPLSVRALDILEIMKPISAHREYVF
PSRNNPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEEGFNPDV
IEAALAHSDKNEVRKAYNRSTYLYQRIDLMNWWANFVFKKTHE
>t4329 DNA adenine methylase
MSTILKWAGNKTAIMPELIKHLPAGQRLVEPFAGSCAVMMATDYPHYLVA
DINPDLINLYKKIALDCEAFISRAKNIFAIANREVAYYNIRHEFNHSSEI
TDFMKAVYFLYLNRHGYRGLCRYNLSGHFNVPYGNYKNPYFPENEIRAFA
KKAQRATFICASYDETLAMLRAGDVVYCDPPYDGTFSGYHTASFTGDDQY
HLASILERRSSEGHPIIVSNSDTSLTRSLYRNFTRHRIIAKRSMGVAAGD
GKSATEIIATKLVRWFGVDLASGPDVSVETEVRAWQ
>t4280 hypothetical protein
MAGKTARSKVEKFRRDFVTLARDAGRAYATAADSMRIAKYFLNYLRDNGI
KLRHTDSIKTRHVTGYLQFRKSQGISVRTIQNERAAIRGVLNKAGRYKLA
DPNNPLLSNKALGLEKSSRSGTKLPLSPEEFQKAFKEVEKSNRGVAATML
LSYTLGLRTKEAVESCKSVMTWKRALESGEHSVRVIFGTKGGRGRNTLIV
DKDALRHAINYAEKVMKENNGKLIDRPDIRKAIDTYRYHVRRAGLTGEKA
PHSMRYHFSQEAREYYEKNGFSGKEIYAQVSMDLGHGDGRGRYVKQVYFR
DGTEDE
>t2839 conserved hypothetical protein
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVA
CIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLL
YQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYA
LLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGY
APAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIA
CRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDS
GHRST
>t2913 conserved hypothetical protein
MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAM
YRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWF
LLQLMSADAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKE
FASVVMALQDNPPKLQSAPAYRRKRG
>t2160 probable DNA recombinase
MKRKYLTQEEIEKLLSATDRMPFPERNRCLILMAFIHGFRASELLGLRLS
DIDLAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSWLRARKYLEKGADGDW
LFLSLRRHPLSRQQFFYILREAGRLAELTIAPHPHMLRHACGYALADKGI
DTRLIQDYLGHRNIQHTVRYTASNAGRFHGIWRKKRRV
>t2667 putative DNA-invertase
MIMLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKSDRPGLKKL
LRTLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTST
PMGRFFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTSEQW
AQIGRLLEAGESRQRIALIFDVGVSTIYRKFPANKNNKSP
>t1926 putative DNA methylase
MRYGSVCSGTAAMPIEEPALRTWRRPFLKWAGGKYSLLPELDRLIPAGKR
LIEPFVGGGSVFLNSDKHERFLLADVNADLINLYQMLAVVPDSVIAEAMK
AFRHLNDAENYTVIREAFNAQKLNATERAAAFLYLNRHCFNGLMRYNLDG
FFNVGWGKYKAPYFPEEEIRAFRQKSHACVFMTAGFERTLRLAGDGDVVY
CDPPYEPMPGTAGFTNYASGGFSWDSQVALAESCVAAHQRGAKVFISNST
APRVIELYERHGFTLHRVNARRSISSKGSTRETANDIVASLGI
>t1986 probable integrase remnant
MHKYLSVVKKHRVPLSDAAVDLLKDLPRLKDNNHVFPAPRAETLSDMSLL
AVLKRMGYIDLTQHGFRSTFREWAGEATDYQREVIEHALAHQLADKAEAA
YQRGTLWPKRVALMDDWTGYSTANS
>t0102 putative IS element transposase
MMLILKAYKFRLEPTPEQSQRLRQLCGCARFVWNLGLAETKRILGSGEKL
PSAFELNRMLTVWKKMPGHIFLQDAYTDNLQQKLKDLHTAWKRCFDKKLA
AKAPVWKRKNEGRDSIRFVNFEKYCRLENRRVKLPSGLGWVKFRQSQRVN
GKIKNATISQLAGQWYISFQVEVETAEPNHTSTTIVGLDAGVTKLATLSD
GTVYQPVNSFKASQRKLATLQRQLSRKVRFSSNWQKQKRKVQHLHSHIAN
IRRDYLHKVTSEISKNHAMIVIEDLKVSNMSKSAKGTAEQHGRNVKAKSG
LNRSILDQGWYEMRRQLEYKQLWRGGQVLAVPPAYTSQRCACCGHTAKEN
RLSQSKFVCQACGYTANADVNGARNILAAGHAVLACGGMVQSGRPSETGT
RR
>t1476 hypothetical protein
MLQPRLYTFYECYFFWLIKKVKLMKLSVTLAFFGYMMVSSMAQASDINMW
REPKPVVKEGKYYSLIMDRGELQKAVKSSSNNYLFSEKGAGVKPLVLIGS
PVEISEFMLQNKTRSIENHIKGLPDIYMGVTKYKPKQRFTGLFPLQDILT
QTVDQVSKFVPGTDITDAVGIPSDLKALQQAILAMKQKDKISKNILYVKF
SYLPEDGMVKVGSKTVSFGRILEKMQQSNRTLRR
>t1917 putative DNA replication protein
MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRM
NQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGS
GFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYD
GGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPV
GVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
>t2953 hypothetical protein
MAYSRHIKAALRAIHADRPNASYEEMREHLRDIAEWELSTGRSDLFEPDM
RDLYRDQYGEVGENLVHSEPLTIDQHRYINEALNVLKACMKRIEAGDSQP
LIDYIDGFDAAAGANDQASATLSVSAPQKTSITEGKHCVTVASLFEQYEQ
ENAQNWKPATLRENKASHAALIEVFDYLGLNADANVLARADMLRVRDILQ
QLPKNRKQRFKDVPLVDLLGREDKTDCLDIVTINNKYLIKMAAVFKWAVR
NDLIKKNMTEGLELKVPQRKASEARNAFSTEQVGQLLAAAQVYSQRPSGK
PYHYYVTALAAITGARLNEIAQLQVKDVRTTEAGTVYIHINEDDSSLPGK
SIKNAHSDRCVPLVDGAYGFILADFMRLVETRRGADGDDAMVFDGLRLMK
NGYGEQVSKWFNRTLLPKVLADRSGLAFHSFRHTVATQLKQHGVELAYAQ
AIMGHSSGSITYDRYAKEVEVDRLVNVMADVYKEIVG
>t1718 conserved hypothetical protein
MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTLPGYRHM
RELVGKRDNVVFSCGVHPLNQDEVYDVEELRLLAAEDDVVAMGETGLDYF
YTPETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDC
GGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRL
LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQITTDNF
ARLFHIDASRLSSIR
>t4519 protein kinase
MIEVGRIIAERYKILSYVGKGGMQDVYKVLDLKLDLDLALKTPLPGLESK
RFLKSAKIAAKINHHNIAKTFDYVEDNGNIFLAEEFVEGENLEEKLRHFD
FLDPHYGACILHNLAKGIMASHKADVIHRDLKPSNVMVSGGVQISNLKIT
DFGIATLTQELFDEAAASGDLTRSTSGTIKGALPFMSPELMFGKKGKPIE
ASTDIWPLGAMMFKLLTGDYPFGVYLDAAVNVKTKNRMEWPTFMTANPQY
QSLSQDLQKIVDKCLSYDSDKRPTAETLVKACETLCYLSEERHVGRVNNL
IQGGISGFIDGTPSNSFFSMESVYGSRYPNTSTRNTVCYSTFDGHPWPRA
HPVILWKD
>t4518 integrase
MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKE
DRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTF
ETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAP
IKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKA
RHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWD
EFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK
QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMAR
GALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADY
LDIIQYEHITPYEYARVCNIK
>t0872 hypothetical protein
MSLKISEITKERLRRAGKKVREDNPDWNGDVGFRVFKLDTSNIRPWEATA
ETLSEQIDAYVSPILEGRNEEDLLTELMLKRGIDLSVNIETRQFDGLTVS
CVDGGKLFTCFAKQIPASSVEELTKGIIDWYKSLKAGKDTVCYFLDDAFE
NNVAKTNLCAILEQHGLTNLHSL
>t3198 ATP-dependent RNA helicase
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEKPSPIQ
AECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPT
RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTP
GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT
ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN
EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI
GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR
LEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAALLKMAQ
GERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRERRDV
GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERR
EGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGDA
>t1346 DNA-invertase
MQIGYIRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSARPGLKKLLR
TLSEGDTLVVWKLDRLGRSMKHLITLIEELREKGVNFRSLTDSIDTSTPM
GRFFFHVMGALAEMERELIVERTLAGLEAARAQGRIGGRRPKLTKEQHEQ
IARLIKNGYSRKQLAIIYDIGISTIYRYHPVEELQTQAEL
>t4099 conserved hypothetical protein
MARTEIWLRLMYVGDLYGEAMLNMANSLIRQPQINRTHLQEAGLTARQAE
RFLQLPAGVLDETLRWLELPQHHFLCADSEIYPPQLRAIDDYPGAIFIDG
DPACLHTCQLAVVGSRSHSWYGERWGRLLCESLAKSGLTITSGLARGIDG
VAHNAAMSMGGKSVAVLGNGLAKIYPRRHAMLAENLIATGGAVVSEFPLS
TPPLSQNFPRRNRIISGLSKGVLVIEAALRSGSLVTARCALEQGRDVFAL
PGPIGSPGSEGTHWLIKQGATLVTTPEDILENLQYGLHWLPTTAENSLYS
LNQDEAALPFPELLANVGDEVTPVDVVAERAGQPVPAVVAQLLELELAGW
IAAVPGGYVRLRRASHVRRTNVFV
>t4357 probable phage integrase
METNITWQQLIDEYFFAKPLRSASEWSYTKVFKSFVHYMGPLSCPNDVTY
HKVLAWRRFLLKEKKLSGRTWNNKVAHMRAIFNYGIQRGLLHYDENPFNN
SVVKPDKKRKKTLTQAQIEYAYQIMEQYENQENTGLGLKYSRCALFPAWF
WLTVLDTLYYTGIRQNQLLHIRLNDVDLREGQIRLITEGCKNHKEHYVPV
ISFLRPRLTCLMEKAQSEGLKGNDRLFNIALFTGKDPAIGDDMDSPQVRA
FFRRLSKECQFAISPHRFRHTLATEMMKMPEQNLHMAQSVLGHSNMKSTL
EYVENDIAVMGRALEAQFMQIKAAHARSIYSGLTKNR
>t1188 conserved hypothetical protein
MNNQLTEITVVRRQSAPRLEFEAAAIYEYPEHLRPFLSEAPALPGVYIFH
SESDTLPLYIGKSVNIRSRVLSHLRTPDEAAMLRQARRISWICTAGEMGA
LLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQKIEVVSARSVDFSHEPN
LFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAG
ACCGQETPQAHFLRLQASLERLRVVCWPWKGAIALKESRPQMTQFHIINN
WLWLGAVPSLDEAATLVRTPAGFDQDGYKILCKPLMSGQYEIIELHTDCR
QS
>t4355 putative DNA helicase
MPHTDTPEQAAVIAWKGERLVVCAFAGSGKTTTLRRYAEENPTERMLYIA
YNRAIRDEAEQKFPFNVTCKTSHQLAWPTVGKHYSHRLINSLRLTYVARA
LNSRNWLLARLTLDVLNRFICSAATDITPEHMPDPDDCKGLQPGQILFSA
KKIWAMMSARQGDFPVTHDTYLKLYQLSKPNLSSRYTTLLFDEAQDANPV
ISAIVLNQTCRVVLVGDTHQQIYRFRGADNAMQAPQLENSDRLWLTHSFR
FGPEVAGVANRLLALKGETHQITGKGGAGRVLLTMPRNFGHHAVLHRSVC
GVIRTALHWSLAGRKVFWVGGMESYRIEDLLDLYWFSIDMSERMRHDRLT
REYRDYDEYLQIAEDTGDVEMKQGIFILEQFFPLPDRLNTLREQRVISES
EADVTVCTAHRSKGLEWDRVKLHDDFLDILDPDMPESQRQDEINLMYVAA
TRARKVLITDPILHELLIQPRAEDIAGTSADKSGESEVSTENDKKGTEYV
PES
>t1994 conserved hypothetical protein
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEL
DLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACW
SPCEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLPVENINDQVRHL
VRLMPVLRLRDARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNL
TDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQNEQRSWRYLDII
NRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRLH
PIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWR
LGTGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
RSLLNNDREEEREHLTALPTLDMEHFMYRQGFADVFHRVAQLPLNVPMNT
RKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGR
AD
>t0101 putative IS element transposase
MFATLLFLRSTSIQKHKINRSRHAAFLLHVHLVFITKYRRKILGESHYAA
FHQYAAEVCRDFGGELKESNGDVDHVHMLIEYPPTVQLSVLVNSLKAVTS
RRLRNEFIDLRGAYGKAVLWSRSYFAGSCGGAPLEVVKQYIQHQRG
>t4367 hypothetical protein
MGILAQEMKRLAQQAGGSHKTVHDRIKLAQGITKRSLQNEMAAVRCILKQ
AGRDRLAQSERLNNRSLGLSGASRNGTKLAITPEHYRDVLETARVKDPGM
AAALELSKLMGLRSQEAVQSVQSLKTWRQALDRGDTRLTVVFGTKGGRPR
ETIILDAVAVRKALDNALAVAEDRHDRLIDKPDLKTAMKYWHSQASRLGL
TGAYSPHSLRYAWAQDAIRHYLAQGFSEKEALAMTAMDLGHGDGRGRYVA
QVYGRKDGGD
>t3191 conserved hypothetical protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGE
LTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTP
VLKND
>t2657 putative reverse transcriptase
MTIEVQRWEDKFEIKPGVWVYVPSVEARKVGGKILQAVRNKWIPPLYFYH
LRTGGHLKAARLHLKSDFFAVVDIKQFFQSTSRSRITRDLKSYFTYSQAR
EISTFSTVRNLSHSPHKHVLPFGFVQSPILATLCLDKSYFGSLLRRLNKH
HDLKLSVFMDDVIISSNNLAQLQAAYDEALVAMRKSGYQANMSKTQAPSS
KISVFNLTLSKGVMKVTSQKMSDFLIDFYSSNYEPHRIGVKNYVEAVNPG
QAKLFKL
>t4330 putative exonuclease
MNTDKMTISQRANQWLDNDYLFIDTETTGLGDDAEIVEICIIDSHGFIML
NTLIKPTKPIPDEAIAIHGITNEMVAFAPAWTDICGAVEELFRRFGFVIY
NADFDLRLIRQTYALNERPSEGAPWMLAAHSVCAMKLYAEYRGEPGRFNG
YKWHKLVDAAAHEGVVVEGKAHRALADCKMTLGLVRALAKGGAK
>t1052 conserved hypothetical protein
MDTSRLTLDHFLSRFQLLRPQMTHETLNQRQAAVLIPVVRRPQPGLLLTQ
RAIHLRKHAGQVAFPGGAVDSTDASLIAAALREAQEEVAIPPQAVEVIGV
LPPVDSVTGFQVTSVVGIIPPNLPWRASEDEVSAVFEMPLAQALQLGRYH
PLDVYRRGNSHRVWLSWYEHYFVWGMTANILRELALQIGVKP
>t1896 putative bacteriophage protein
MVCNHSFWVITMNQAIEQIIHSSLNKNEPGAGVGSSVTANDIIEGVRPYY
QAASGAEKLSIVERLNKLKVEPGVPIPSNIEQLLSN
>t4607 conserved hypothetical protein
MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAAHFPRVL
ALAARFPSLYAALGLHPIVIERHADDDPDKLQQALAQQQNVVAVGEIGLD
LYRDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMRLKRQSLP
QTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVMARLPLDA
LLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELRPEPAEVIADTLYRN
TVTLFRL
>t3409 DNA adenine methylase
MSTILKWAGNKTAIMSELKKHLPAGPRLVEPFAGSCAVMMETDYPSYLVA
DINPDLINLYKKVAADCESFISRARVLFEIANREVAYYNIRQEFNYSTEI
TDFMKAVYFLYLNRHGYRGLCRYNKSGHFNIPYGNYKNPYFPEKEIRAFA
EKAQQATFICASFDETLAMLQVGDVVYCDPPYDGTFSGYHTNGFTEDDQY
HLASVLEYRSSEGHPVIVSNSDTSLIRSLYRNFTHHYIKAKRSIGVSAGE
SKSATEIIAVSGARCWVGFDPSRGVDSSAVYGVRA
>t0361 conserved hypothetical protein
MSSWVEVSLNTPAQLSLPLYLPDDETFASFWPGDNASLLAALQNVLRQEH
SGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDG
MEHLSLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQ
LNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRF
LLKRLDREMRTLFMTLDQLDHASITAQRKLTIPFVKEILKL
>t1056 putative ATP-dependent helicase
MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTG
KTYAYLAPALRAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALL
KGRSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVS
VAEDSQAWPLVTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHL
FLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
DSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRSRLKRLK
EINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLS
VNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAAR
QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK
GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL
KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE
>t0518 conserved hypothetical protein
MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIVVHDGMG
KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVP
FAEHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITAR
CDEFTPDSLKALALWMTRNAKNEAALQEKPEETE
>t0599 ada, ADA regulatory protein
MMKKALLTDDECWLRVQARDASADGRFVFAVRTTGVFCRPSCRSKRALRK
NVRFFANAQQALDAGFRPCKRCQPDNARAQQRRLDKIACACRLLEQETPV
TLASLAQAVAMSPFHLHRLFKASTGMTPKGWQQAWRARRLREALAKGEPI
TAAIYRAGFPDSSSYYRHADQTLGMTAKQFRKGGDNVSVRYALTDWVYGR
CLVAESGRGICAILPGDSDDALLAELHTLFPAARHEPADAPFQQRVRQVA
AAINTRDVLLSLPLDIQGTAFQQQVWQALCAIPCGETVSYQQLAATIGKP
TAVRAVASACGANKLAMVIPCHRVVRRDGALSGYRWGVRRKAQLLKREAQ
KEE
>t0748 alkA, DNA-3-methyladenine glycosidase II
MFTLSWQPPYDWSWMLGFLAARAVDGVETVGEGFYARSLVVGEHRGLVSV
RPHLPTHTVQVSVSAGLLPVAPACLAKVSRLFDLDCQPEQVAAVLGPLGE
DRPGLRLPGSVDTFEQGVRAILGQLVSVAMAARLTAKVARRYGEALPDAP
DYVCFPGPETLALADPLALKALGMPLRRAEALIHLAQATLAGKLALSAPP
DIEQSVKNLQTFPGIGRWTANYFALRGWQAKDIFLPDDYLIKQRFAGMTA
AQIRRYAERWKPWRSYALLHIWYTHGWQPSMDSEIAGIQ
>t0600 alkB, AlkB protein
MLDLFADEAPWQEPLAPGAVVLRRFAFRAAQSLLDDIGFVASQSPFRQMV
TPGGYTMSVAMTNCGALGWTTDGHGYCYAVRDPLTDKPWPALPLSFASVC
RQAAIAAGYASFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGV
PAVFQFGGLRRSDPLQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMT
GEFRYNLTFRQAAEKE
>t4022 dam, DNA adenine methylase
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRY
ILADINSDLISLYNIVKLRTDEYVQASRELFMPETNQAEVYYQLREEFNT
CQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKRPYFPEAELYH
FAEKAQNAFFYCESYADSMARADKSSVVYCDPPYAPLSATANFTAYHTNS
FSLTQQAHLAEIAENLVSNRIPVLISNHDTALTREWYQLAKLHVVKVRRS
ISSNGGTRKKVDELLALYQPGVATPARK
>t0886 dcm, DNA-cytosine methyltransferase
MQENISVTHARNLIADDAGSEIQAMLSQLLEIYDVKTLVAHLNGLGEQHW
SPAIFKRVMMNAAWHRLSDNELSCLKTELPTPPAHHPHYAFRFIDLFAGI
GGIRRGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRDITL
SHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAGVSKKNALGRAHG
FACETQGTLFFDVVRIIDARRPALFVLENVKNLKSHDQGNTFRIIMQTLD
ELGYDVADAADNGPDDPKIIDGQHFLPQHRERIVLVGFRRDLNLKTDFTL
RNIARCYPPRRPTLAELLEPVVEAKYILTPVLWKYLYRYAKKHQARGNGF
GYGMVYPDNPESVARTLSARYYKDGAEILIDRGWDMAKGEVNFDDAGNQQ
HRPRRLTPRECARLMGFEAPQTYQFRIPVSDTQAYRQFGNSVVVPVFAAV
AKLLEPKIHQAVTLRQRETADGGRSR
>t2537 dinP, hypothetical protein DinP
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARQ
FGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPL
SLDEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAK
IASDLNKPNGQYVITPADVPDFLKTLPLAKIPGVGKVSAAKLENMGLRTC
GDIQQCDLAMLLKRFGKFGRVLWERSQGIDERDVNSERLRKSVGVERTLA
EDIHEWSDCEAIIEHLYPELERRLAIVKPDLLIARQGVKLKFNDFQQTTQ
EHVWPQLNKEDLITTARKTWDERRGERGVRLVGLHVTLLDPQLERQLVLG
L
>t3681 dnaA, chromosomal replication initiator protein
MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDW
VRDKYLNNINGLLNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQT
TTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLAR
AAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYM
HSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF
HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET
RVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG
RAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKIADLLSKRRSR
SVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREES
HDIKEDFSNLIRTLSS
>t4152 dnaB, replicative DNA helicase
MAGNKPFNKPQTDARDRDPQVAGIKVPPHSIEAEQSVLGGLMLDNERWDD
VAERVVAEDFYTRPHRHIFTEMGRLQESGSPIDLITLAESLERQGQLDSV
GGFAYLAELSKNTPSAANISAYADIVRERAVVRDMIAVAHEIADAGYDPQ
GRNSDELLDLAESRVFQIAENRANKDEGPKSIDQILDATVARIEQLFQQP
HDGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAM
LQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGT
MGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRV
PSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
LTFNGQWSRFDNYAGPQYDDE
>t4586 dnaC, probable DNA replication protein
MKNVGDLMQRLQKMMPAHITPAFKTGEELLAWQKEQGEIRAAALARENRA
MKMQRTFNRSGIRPLHQNCSFDNYRVECDGQMNALSKARQYVDEFDGNIA
SFVFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNRE
TSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM
LTNSNMEEMTKMLGERVMDRMRLGNSLWVNFSWDSYRSRVTGKEY
>t0232 dnaE, DNA polymerase III, alpha chain
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGL
VKFYGAGHGAGIKPIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLL
ISKAYQRGYGAAGPIIERDWLVELKEGLILLSGGRMGDVGRCLLRGNQAL
VEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATN
DVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELF
SDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKSKEGL
EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQW
SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP
DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
HPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRALIDMARK
LEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAG
LVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN
FIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY
TLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEK
FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL
VDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAII
DARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL
DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLV
IAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV
SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR
LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLI
GSEQVELEFD
>t3130 dnaG, DNA primase
MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSF
TVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYE
AGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSA
EIIQRFAIGFAPPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRF
RNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYE
AQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRA
TNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLV
RKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLIN
QVPGDTHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTT
MRILIGLLVQNPDLAPLVPPLDALDQNKLPGLGLFKELVKTCLAQPGLTT
GQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLR
QEELIARDRTHGLSSEERRELWTLNQELARK
>t3682 dnaN, DNA polymerase III beta-subunit
MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLE
MEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVR
SGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQD
VRYYLNGMLFETEGSELRTVATDGHRLAVCSMPLEASLPSHSVIVPRKGV
IELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPK
NPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE
EAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIE
DAASQSAAYVVMPMRL
>t2601 dnaQ, DNA polymerase III epsilon subunit
MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHV
YLKPDRLVDPEAFGVHGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNA
SFDIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMFPGKRNSLDALCS
RYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEA
TIQRIVRQASRLRVVFASEEELAAHESRLDLVQKKGGSCLWRA
>t2376 dnaX, DNA polymerase III subunits gamma and tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVG
KTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK
VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHV
KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP
RALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL
SLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPA
ALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVE
MTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQVQQPSAPAPQTS
PAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLA
SVSERVQARPAPSALETTPVKKEAYRWKATTPVVQTKEVVATPKALKKAL
EHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNA
VCLHLRSTQRHLNSSGAQQKLAQALSDLTGTTVELTIVEDDNPAVRTPLE
WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI
>t3005 endA, endonuclease I
MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPGSFYCGC
QIRWQGKKGVVDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQD
GGRKNCAKDPVYCKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQ
CAMKVDFKAKLAEPPARARGAIARTYFYMRDQYQLKLSRQQTQLFNVWDK
QYPVTAWECERDARIAKVQGNHNPYVQRACQARKS
>t2880 exo, 5'-3' exonuclease
MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSPCVETCQ
HALDQLIIHSQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNE
MPALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGY
CQLLSPGLRIRDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVP
GVAGIGPKSATQLLVQFQNLEGIYAHLDEVPEKWRKKLETHKEMAFLCRD
IARLQTDLHIDGNLQQLRLVR
>t0999 exoX, exodeoxyribonuclease X
MLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAI
HRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTM
KLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDI
MRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFN
NLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ
>t3300 fis, Fis DNA-binding protein
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>t0592 gyrA, DNA gyrase subunit A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY
AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY
MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYD
GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDN
EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEA
DAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG
MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI
ISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRA
PTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYL
TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLME
VIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQGYVK
YQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY
WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMAT
ASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAA
GKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQN
GYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITD
AGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA
IDGSVTEGDEDIAPEAESDDDVADDADE
>t3684 gyrB, DNA gyrase subunit B
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE
ALAGHCKDIVVTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHA
GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVP
QAPLAVTGDTDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSG
VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI
GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE
QQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDL
AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD
VDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE
AMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRMERR
FPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFD
VHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGL
IEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYKGLGEMNPDQL
WETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA
NIDI
>t1845 helD, helicase IV
MELKATSLGKRLAQHPYDRAVILNAGVKVSGDRHEYLIPFNQLLAIHCKR
GLVWGELEFVLPEDKVVRLHGTEWSETQQFHRYLDAHWRRWSQEMSDVAA
QALQEQWARISERTGGNQWLTREHVRGLEHEIRQTFAALPLPVSRLEEFA
HCREIWRKCLAWLQDSEGSRQQHNQAYADAMLEAHADFFTQIESSPLNPS
QARAVVNGESSLLVLAGAGSGKTSVLVARAGWLLARGQADAGQILLLAFG
RKAAEEMDERIRERLHTEEITARTFHSLALYIIQQGSKKAPVVSKLESDA
TARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNFWDDETLQR
RLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKRIKLMAPLLKAWK
SALKAENAVDFSGLIHQAMVILEKGRFISPWKHILVDEFQDISPQRAALL
EALRKQNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGEGEHCHLDT
TYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQLDALL
DKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQ
QADYVILVGLQEGNDGFPAPARESIMESALFPQVEDFPDAEERRLLYVAL
TRARARVWLLFNKDNPSRFVEALKQLDVPVARKP
>t0099 hepA, probable ATP-dependent helicase HepA
MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYARSDSPV
TRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREV
LLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQ
RTNLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA
ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQ
LVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIE
QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYR
PVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSDRDDAQAAR
DELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTS
HRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF
AEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASL
INYLAAPEETDGFDDLIKSCREQHEALKAQLEQGRDRLLEINSNGGEKAQ
QLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVLTPSDHMLVPD
FPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSST
ISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN
NLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEQSAR
ALIDNARREADEKLSGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESL
NQAGWRLDALRLIVVTHQ
>t1220 himA, integration host factor alpha-subunit
MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFG
NFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE
>t1952 himD, integration host factor beta-subunit
MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGS
FSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
>t2221 holA, DNA polymerase III, delta subunit
MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRLAAASQGFEEH
HAFTLDPSTDWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATL
SELLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLPRW
VAARAKAQNLQLDDAANQLLCYCYEGNLLALAQALERLSLLWPDGKLTLP
RVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTL
QRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRPMIGDALQRLHPAQLRQ
AVQLLTRTEITLKQDYGQSVWADLEGLSLLLCHKALADVFIDG
>t1719 holB, DNA polymerase III, delta' subunit
MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYALSRYLLC
QQPEGHKSCGHCRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKL
YEHSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLASPEPAR
LLATLRSRCRLHHLAPPSESYAMSWLSREVTASQEALLTALRLNAGSPGA
ALALLQSERWAQREALCQALMDSLHTGDWYALLTALNHEQAPARLHWLAT
LLVDALKRQHGASYLTNVDADAVVAALAGPLSPARIQAILNDVCHCRDQL
LHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL
>t4511 holC, DNA polymerase III, chi subunit
MATHLNPPQEASYMKNATFYLLDNDTTVNGLSAVEQLVCEIAAERWRAGK
RVLIACEDEKQAIRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQK
RNSSPRDILISLRTSFADFATAFTEVVDFVPYEETLKQLARERYKAYRVA
GFNLNTATWK
>t4600 holD, DNA polymerase III, psi subunit
MTSRRDWQLQQLGITQWALRRPGALQGEIAISLPAHVRLIVVAEELPALN
EPLMRDILRALTVSPDQVLPLTPERVAMLPQGSRCNSWRLGTDAPLQLEG
AQVTTPAFNELRVNPAARAALWQQICEHEHDFYPQHDRSPRSLAD
>t1544 hrpA, ATP-dependent helicase HrpA
MTEQSTLTLQVLQQRLDALMLRDKQRFSRRLHGVKKVKNPDAQQAIFQTM
AKEIEQAATQVALREAARPSITYPQNLPVSQKKQDILEAVRDHQVVIVAG
ETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEP
GGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAH
ERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVS
GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNV
AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRC
GRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
FPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDP
RLARMVLEAQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHD
KESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEYTGARNA
RFSIFPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLI
KRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFI
RHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEFYD
QRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPN
FWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRM
TGVTVDREDWHWDQVPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKV
QETLSAVADDGIEQSGLHIWSFGELPESYEQKRGNYKVKAWPALVDERDS
VAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEKVRAELNDTVV
DIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDREQMLKVESVQQAWQQWINK
LPPARREDDDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA
>t0197 hrpB, ATP-dependent helicase HrpB
MEPFVTSLPVAAVLPELLTALKTAPQVLLSAPTGAGKSTWLPLQLLQQGP
VAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQSCVGPRTRL
EVVTEGVLTRMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQGL
RDDLRLLIMSATLDNDRLCQRLPDAPTIVSEGRAFPVERRYQPLAAHLRF
DEAVAMATAELLRNENGSLLLFLPGVGEIQRVHEHLASRVGSDVLLCPLY
GALSLEAQRKAIVPAPAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVA
RFDARTGLTRLVTQRISQASMTQRAGRAGRLAPGICLHLLAKEQAERAAA
QSDPEILHSDLSGLLMEVLQWGCHDPASLFWLDRPPEVNLQAARRLLLML
GALEGERLSARGRKMAATGNDPRLAAMLVNADEGDSAATAAMLAAILEDP
PRGGGTDLSVLFSRRQPGWQQRSQQLLKRLQVRNGEPDSALIMPLLARAF
SDRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQGSASPDA
RILLAQPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAWRRMRIGQLTVS
VQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLPE
YDWPAVDEASLLATLENWLLPHMTGVQSLRSLKSLNVTQALRGLLDYAML
QRLDSELPGHYTVPTGSRITIRYHEDNPPALAVRMQEMFGEASTPTLAQG
RVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEMKGRYPKHVWPDDP
ANTAPTRRTKKYS
>t3461 hupA, histone like DNA-binding protein HU-alpha
MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTF
KVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK
>t2409 hupB, DNA-binding protein HU-beta
MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTF
AVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN
>t4371 int, bacteriophage integrase
MLTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRL
AFGPYPQVTLAEAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYI
ATAWHSSCLKLWSEDHADKILTCLKRYVFPDIGAMDIAEVETRHLAQLVK
SIDDKGVHDVAGRVRQHLTKIMRHAVQQGTIKYNPAYDLDGVVTPVVTQH
HPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSELRLARWDEF
NLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEI
TGESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSA
LNESALWSKDAIERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLD
MSREGYVAPYIYARRHKAA
>t1929 int, integrase
MKSSTLVNAPGRQEGLMANASYPTGVENHGGSLRIWFLYKGKRVRENLGI
PDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSTNLARFGQDRKEITV
LELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLY
VRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKE
NPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRH
GELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAI
DALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGY
HYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQM
GHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
>t0431 ligA, DNA ligase
MEPIEQQLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRP
DLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQD
RLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVR
TIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPR
NAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWG
LPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAG
VLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETR
PIVFPTHCPVCGSDVERVEGEAVTRCTGGLICGAQRKESLKHFVSRRAMD
VDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNAL
EKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVP
DVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLA
KAQELGITVIDEAEMIRLLGA
>t1704 mfd, transcription-repair coupling factor
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQ
NALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPS
MQRGVLIVPVNTLMQRVCQHSYLHGHALVMKKGQRLSRDALRAQLDSAGY
RHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQ
RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSK
GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDGLFSELKRWPRLQLKTDHLPEKAAN
TNLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGE
LLARIKIAPKRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLL
GERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLE
AGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAW
SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA
EGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE
AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL
ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTADAQKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ
QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRF
GLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVDPAWL
IGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENAIA
>t2507 mod, Type III restriction-modification system StyLTI enzyme mod
MLKDNQKHNESVAPNSAFLSELQRALPEFFIADRYNEQGELIAKGGFDLA
KFERALKARNIDELTSGYQIDFIGKDYAKKQAGEKSVTVIVPDVEHNTLA
ENKNSHNLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYPDH
FEYSDRALQDMFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLK
DTGFIFISIDDNEYANLKLMMDEIFGEGGFVTNVMWKRKKEISNDSDNVS
IQGEYILVYAKTGQGALRLEPLSKEYIQKSYKEPTEQFPEGKWRPVPLTV
SKGLSGGGYTYKITTPNGTVHERLWAYPEASYQKLVADNLVYFGKDNGGI
PQRVMYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFDTPKPTALL
KKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQAL
SNNTIAKKAGYNTIDEISRERITRVAAKIRANNPATNSDLGFKHYRFATP
TQQTLDDLDSFDIATGHFINTSGQLAAFTESGFTDMINPFSARGLGVPGG
ASGEETLLTTWLVADGYKMDIDVQTVDFSGYCARYVDNTRLYLIDERWGT
EQTRDLLNHIGTHQLPVQTIVIYGYSFDLESIRELEIGLKQLDQKVNLVK
RY
>t3132 mug, G/U mismatch-specific DNA glycosylase
MVKDILAPGLRVVFCGINPGLSSANTGFPFAHPANRFWKVIHLAGFTDRQ
LKPEEAEKLLDFRCGVTKLVDRPTVQATEVKLHELRSGGRNLIEKIEDYQ
PAALAVLGKQAFEQGFSQRGIAWGKQKIAIGATMVWVLPNPSGLNRIKTE
KLVEAYRELDQALIMRGL
>t2914 mutH, DNA mismatch repair protein
MSALCPLLTPPASEALLLAQARQLSGYTLGELAVMAGITTPKDLKRDKGW
IGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPL
TGNSGVTWETSHVRHKLKRVLWVPVEGDRSIPLAERRVGSPLLWSPSEEE
DRQLRLDWEELMDMIVLGQVERITARHGEVLQLRPKAANARALTEAIGAR
GEPILTLPRGFYLKKNFTQALLARHFLLQNP
>t4410 mutL, DNA mismatch repair protein
MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGG
AKLIRIRDNGCGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALA
SISSVSRLTLTSRTAEQAEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDL
FYNTPARRKFMRTEKTEFNHIDEIIRRIALARFDVTLNLSHNGKLVRQYR
AVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWVADPNHTTTAL
TEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD
VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHV
PENRIAAGRNHFAVPAEPTAAREPATPRYSDGASGGNGGRQSAGGWPHAQ
PGYQKQQGEVYRTLLQTPTTSPAPEPVAPALDGHSQSFGRVLTIVGGDCA
LLEHAGTIQLLSLPVAERWLRQAQLTPGQSPVCAQPLLIPLRLKVSADEK
AALQKAQSLLGELGIEFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLA
QQTTFATVNIAQWIARNVQSEHPQWSMAQAISLLADVERLCPQLVKAPPG
GLLQPVDLHSAMNALKHE
>t3792 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETSRRGIEPHLVGATILHAHIRNGRLRWPVSDEIYRLSDTPVL
SVQRRAKYLLLELPDGWIIIHLGMSGSLRILSEALPAEKHDHVDLVMSNG
KILRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDEFNGEYLQQKCAKK
KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSTEECDLLAR
VIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTP
IVATKHAQRATFYCRHCQK
>t2810 mutS, DNA mismatch repair protein
MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRAS
QLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGD
PATSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATL
DISSGRFRLSEPADRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRR
RPLWEFEIDTARQQLNLQFGTRDLVGFGVENASRGLCAAGCLLQYVKDTQ
RTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCT
VTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDTVSELQPVLRQVGDL
ERILARLALRTARPRDLARMRHAFQQLPELHAQLETVDSAPVQALRKKMG
DFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLD
RLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNA
ERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANA
LAELDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIA
NPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIG
PIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGRG
TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLD
ALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
ISPNAAATQVDGTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYR
LKSLV
>t0141 mutT, 7,8-dihydro-8-oxoguanine-triphosphatase
MKKLQIAVGIIRNPNDEIFITRRAADAHMANKLEFPGGKIEAGETPEQAL
IRELQEEVGITPTQVTLFDTLEYQFPDRHITLWFWLVERWEGEPWGKEGQ
PGRWIAQNALNTDDFPPANEPIIRKLRQFAP
>t3023 mutY, A/G-specific adenine glycosylase
MQASQFSAQVLDWYDKYGRKTLPWQINKTPYKVWLSEVMLQQTQVTTVIP
YFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLH
GGEFPQTFAEIAALPGVGRSTAGAILSLALGKHYPILDGNVKRVLARCYA
VSGWPGKKEVENTLWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPKCT
LCPLQNGCIAAAHESWSRYPGKKPKQTLPERTGYFLLLQHNQEIFLAQRP
PSGLWGGLYCFPQFASEDELREWLAQRHVNADNLTQLNAFRHTFSHFHLD
IVPMWLPVSSLDACMDEGGALWYNLAQPPSVGLAAPVERLLQQLRTGAPV
>t2148 nei, endonuclease VIII
MPEGPEIRRAADNLEAAIKGKPLTDVWFAFAQLKPYESQLTGQLVTRIET
RGKALLTHFSNGLTLYSHNQLYGVWRVIDTGEIPQTTRILRVRLQTADKI
ILLYSASDIEMLTAEQLMTHPFLQRVGPDVLDARLTPEEVKARLLSPRFR
NRQFSGLLLDQSFLAGLGNYLRVEILWQVGLTGQHKAKDLNEAQLNALSH
ALLDIPRLSYTTRGQADENKHHGALFRFKVFHRDGEACERCGGIIEKTTL
SSRPFYWCAHCQK
>t3463 nfi, putative endonuclease
MDLASLRAQQIELASSVCREDRLDKDPPAFIGGADVGFEQGGEVTRAAMV
LLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLL
FVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSAEPGALS
PLMDKGEQLAWVWRSKARCNPLFIATGHRVSTDSALAWVQRCMKGYRLPE
PTRWADAVASGRPAFVRWQEIQR
>t0652 nfo, endonuclease IV
MKYIGAHVSAAGGLANAPARAAEIGATAFALFTKNQRQWRAAPLTPQVID
DFKIACEKYHFSAAQILPHDSYLINLGHPVSEALEKSRDAFLDEMQRCEQ
LGLTLLNFHPGSHLMQIAQEDCLARIAESINIALAQTEGVTAVIENTAGQ
GSNLGFEFEQLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPEACEKTF
AEFGKIVGFQYLRGMHLNDAKSAFGSRVDRHHSLGEGNIGHDAFRWIMQD
ARFDGIPLILETINPDIWAEEIAWLKAQQIAEAMA
>t1321 nth, endonuclease III
MNKAKRLEILTRLRDSNPHPTTELNFTSPFELLIAVLLSAQATDVSVNKA
TAKLYPAANTPAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILMDKH
NGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQF
APGKNVEQVEEKLLKVVPNEFKVDCHHWLILHGRYTCIARKPRCGSCLIE
DLCEYKEKVDI
>t0977 ntpA, DATP pyrophosphohydrolase
MKDKVYKRPVSVLVVIFAQDTKRVLMLQRRDDPDFWQSVTGSIEEGETAL
QTAVREVKEEVTIDVAAEQLTLVDCQRTVEFEIFSHLRHRYAPGVMHNTE
FWFCLALPHERQVIFTEHLTYQWLDAPDAAALTKSWSNRQAIEEFVINVA
>t1563 ogt, O6-methylguanine-DNA-alkyltransferase
MLRLLEEKIATPLGPLWVVCDEQFRLRAIEWEQYRDRMEQLLNIHYRHEG
YERVSATNPGGLSDKLADYFAGNLAVIDTLETATGGTPFQREVWQALRAI
PCGQVMHYGQLAAQLGRPGAARAVGAANGANPISIVVPCHRVIGRNGTLT
GYAGGVQRKEWLLRHEGYLLL
>t3095 parC, topoisomerase IV subunit A
MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMS
ELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV
DGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTADWVPNFDGT
MQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPK
TTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWTKEDG
AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV
PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEW
LAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK
PALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI
LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPV
TIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTG
RSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDA
GYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAG
RMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLTI
HVGKRKIKLRPEELQKVVGERGRRGTLMRGLQRIDRIEIDSPHRVSHGDS
EE
>t3102 parE, topoisomerase IV subunit B
MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAG
HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF
SNKNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEKVQDL
QVVGTCGKRNTGTSVHFWPDESFFDSPRFSVSRLMHVLKAKAVLCPGVEI
TFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKPFIGNFNGETEAVD
WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI
LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV
KDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLTSGPALPGK
LADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIAT
LLCALFVRHFRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQ
LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTISDEDDQRTN
AMMDMLLAKKRSEDRRNWLQEKGDLADLDV
>t2167 phrB, deoxyribodipyrimidine photolyase
MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPR
QAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHL
FYNYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKV
FTPFKNAWLKRLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAA
LFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRLSASLATGGLSP
RQCLHRLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYPALCKHQPFI
RWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITA
SFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI
FNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPR
PIVEHKQARIATLSAYEAARKGA
>t3437 pin, DNA-invertase
MLIGYVRVSTNDQNTDLQRNALSCAGCERIFEDKISGTKSDRPGLKKLLR
TLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPM
GRFFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTSEQWAQ
IGRLLEAGESRQRIALIFDVGVSTIYRKFPANKNNKSP
>t3621 polA, DNA polymerase I
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLI
MQYQPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVK
AMGLPLLAVSGVEADDVIGTLAREAEKVGRPVLISTGDKDMAQLVTQNIT
LINTMTNTILGPDEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKT
AQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNKDVAYLSYKLA
TIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK
GAKPAAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAP
VFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQR
ALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILN
SVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAE
DADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPA
VLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINP
KTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYL
IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVT
GEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLE
YMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQG
TAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI
HQLMENCTRIDVPLLVEVGSGENWDQAH
>t0100 polB, DNA polymerase II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQATLAPQESVAFIPTSQT
SRAASLLQAEKDYRLTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENG
VTVYEADVRPPERYLMERFITSPVWVDGEMRNGVIRNARLKPHPDYRPPL
KWVSLDIETTRHGELYCIGLEGCGQRTVYMLGPANGDERQLDFELVYVAS
RPQLLEKLNAWFAEHDPDVIIGWNVVQFDLRMLQKYAERYRIPLRLGRDN
SELEWREHGFKNGVFFAQARGRVIIDGIDALKSAFWNFSSFSLEAVSQEL
LGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLKDCELVTRIFHKTEIMP
FLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYIAPNLGEVPPLASP
GGYVMDSQPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
TEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQGNKPLSQALKIIMNAFY
GVLGTTACRFFDPRLASSITMRGHAIMRQTKALIEAQGYDVIYGDTDSTF
VWLRRAHSEADAAEIGHRLVRHVNEWWAQTLQQQNLTSALELEFETHFCR
FLMPTIRGADTGSKKRYAGLIQEGDSQRMVFKGLETVRTDWTPLAQRFQQ
ELYLRVFRNEPYQDYVRETIDKLMAGELDAQLVYRKRLRRPLHEYQRNVP
SHVRAARLADEQNLKQGRPAQYQNRGAIKYVWTVNGPEPVDYQQSPLDYE
HYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF
>t2907 ppdB, prepilin peptidase dependent protein B precursor
MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQLSLEDE
IWQRTYTVAKHLQRAGYCHGHCIGEGLHLAEQGQCVIVQWDGNNNGVWDT
IPAKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFNVER
RDITGFSPVLMLHLRGASKAEPQTVIDAQYSVTGFNL
>t3523 priA, primosomal protein replication factor
MSVAHVALPVPLPRTFDYLLPEGGVAKAGCRVRVPFGKQQERVGIVVSVS
DHSELPLDELKSVIEILDNEPIFSPSIWRLLLWAADYYHHPLGDVLFHAL
PVLLRQGKPASNAPLWYWFATEEGQAVDINSLKRSAKQQQALAALRQGKI
WRYQVAELDFTDATLQTLRRKGLCELASETPAFTDWREHYAVAGERLRLN
TEQATAVGAIHSASDGFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALV
MVPEIGLTPQTIARFRERFNTPVEVLHSGLNDSERLSAWLKAKNGEAAIV
IGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQI
PIILGSATPALETLCNVRQKKYRMLRLTRRAGNARPALQHVLDLKGQRLQ
AGLAPALIARMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
YYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHMLPVGLGTEQLEQVLAP
FFPGVPISRIDRDTTSRKGALEQHLAEVHRGGARILIGTQMLAKGHHFPD
VTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHH
PEHPLLQTLLYKGYDAFAEQALAERQTLQLPPWTSHVIIRAEDHNNQQAP
VFLQQLRNVIQASPLSDDKLWILGPVPALAPKRGGRYRWQILLQHPSRIL
LQHIISGTLALINTLPEARKVKWVLDVDPIEG
>t4443 priB, primosomal replication protein N
MTNRLTLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQM
PVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELI
DSGD
>t3789 radC, putative DNA repair protein
MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLAKEILQH
FGSLYGLLSADFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESAL
LSPEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVH
PREIVREAIKLNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIR
VLDHLIIGRGEYVSFAERGWI
>t4252 rci, shufflon-specific DNA recombinase
MSRPQRIKKMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQRHPLAEKMM
DEITTVDIASYRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEW
GTCRTNPVEMVRKPKISGGRDRRLTSQEERRLSRYFQEQNPALHAIFHLA
IETAMRQGEILSLRWEHIDLQHGVAHLPMTKNGSSRDVPLSRKARHLLQG
MTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHFHDLRHEAISRLFELG
TLNVMEVAAISGHRSLNMLKRYTHLRAYQLVSKLDARRRQTQKIAPYFVP
YPACIESVNEGSDGCCGFRVHLPDFDNLSVSAASRESALEAAGVLLLRTL
AKAAQRGERVPRPGDLPEGKHERVMIHPLLSAA
>t2472 rdgC, recombination associated protein RdgC
MEKQLASMTFTPCGSQDMAKMGWVPPMGSHSDALTHTANGQIIICARKEE
KILPSPVIKQALEAKIQKLEADQGRKLKKTEKDSLKDEVLHSLLPRAFSR
FSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPI
ELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDEIAVH
IEAGKVVTKLALDWQQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFA
QRFDADFILMTGELAALIQSLVEGLGGEAQR
>t2730 recA, recA protein
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDI
ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL
DPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL
TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI
GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKN
KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIG
QGKANATTWLKENPATAKEIEKRVRELLLSNQNATPDFAVDDSEGVAETN
EDF
>t2902 recB, exonuclease V subunit
MNDVAETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAF
PRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARL
LEEISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLSLNAFESGMLFEQ
QLIEDESLLRYQACADFWRRHCYPLPRDIAQVVFDVWKGPKALLKDIDRY
LQGEAPVIKAPPSQEETLASRHEQILARINQVKQQWCEAVSELDALIESS
GIDRRKFNRGNQAKWIEKITAWAQEETKNYQLPEALGKFSQRFLAERTKA
GGVTPQHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELG
FDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI
WRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYTLDTNWRSA
PGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMT
LWLMEGESCGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVR
ASDISVLVRSRREAALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVL
QAVMAPERENTLRSALATSMMGLTALDIETLNNDENAWDAVVEEFDGYRQ
IWHKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGSQ
LESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYP
LVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAEDLR
LLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDA
AGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDS
WRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGAS
PGTFLHSLFEELDFTQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHV
PLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGC
PALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAA
AMQAHRYDLQYQLYTLALHRYLRHRMANYDYERHFGGVIYLFLRGVDSER
PQQGIFTTRPAAALINQLDDMFAGEMSEEAQ
>t2904 recC, exonuclease V subunit
MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTL
SQKFGIAANIAFPLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLP
QLLDKDEFVLLRHYLTDDTDKRKLFQLSARAADLFDQYLVYRPDWLTQWE
AGKTVEGLGEAQNWQAPLWKALVEYTAALGQPRWHRANLYQRFIQTLESA
TACPPGLPSRVFICGISALPPVYLKALQALGKHIEIHLLFTNPCRYYWGD
IKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGNPLL
ASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAV
AGVNLEEYSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEAD
PTLTPRDIIVMVADIDSYSPFIQAVFGSAPTERYLPYAISDRRARQSHPV
LQAFISLLSLPDSRFVSEDVLALLDVPVLAARFTINEEGLRYLRLWVNES
GIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAMESAQGEWQSVLPY
DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNDFFL
PDADTEAAMTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERI
SQRFLAGPINICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGFDLMSQK
PMRGDRSRRDDDRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQE
LVDYIGQSHYLPGDETLTCDESEARVKAHITRLHTRMPFDAQNYQPGEQQ
SYAREWLPAASQSGKAHSDFVQPLPFTMPETLTLESLQRFWAHPVRAFFQ
MRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEEDDAERLFRR
FRAAGELPYGAFGEIFWDAQCQEMQQLASRVIACRKPSQSLEVDLLCNGV
QLTGWLPQVQEDGLLRWRPALISVAQGVQLWLEHLVYCASGGSGESRLFL
RKEGEWRFPPLDKTQAMAYLAQLIEGYREGMSSPLLVLPESGGAWIKACY
DAENDVMLDDDDTLQKARTKFLQAYEGNMMVSGEGEDIWYQRLWRQLESE
TLQAIIAQSRHYLLPLFRFNQSR
>t2901 recD, exonuclease V alpha-subunit
MTIQKRLLEAVEQKLLRPIDAQFALTVAGNDDPAVTLAAALLSHDAGEGH
VCLPLSRLTLTEEAHPLLVAWISETATPIDWKKRLLASAAVSCGDSPAPL
ILCGDRLYLNRMWCNERTVARFFNEVNQAIAVDEDQLSRILDALFPPTDE
VNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR
LAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPGS
QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQ
LASVEAGAVLGDICAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRD
SLCLLQKSYRFGSDSGIGKLAAAINCGDRSAIQAVFQQGFSDIEKRTLQS
SDDYAGMLDEALAGYGRYLRLLHEKAAPEAILQAFNEYQLLCALREGPFG
VRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGLFNGDIGI
ALDRGQGLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEFDHAA
LILPSQRSPVVTRELVYTAVTRARRRLSLYADERILAGAIVTRTERRSGL
ATLFDEVSRIG
>t3683 recF, recF protein
MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR
AFRSLQPGRVIRHEQEAFVLHGRLQGEERETSIGLTKDKQGDSKVRIDGT
DGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTA
WSNLKRLLKQRNAALRQVSRYEQLRPWDKELIPLAEQISTWRAEYSSAIA
QDMADTCQQFLPEFSLTFSFQRGWEKETDYADVLERSFERDRMLTYTAHG
PHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL
IDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV
EKGKITD
>t3774 recG, ATP-dependent DNA helicase
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHL
YPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFN
AAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTP
VYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRT
LHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQP
LSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGW
LAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLE
AQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKS
PLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD
LLRDQAMIPEVQRIARHIHERYPQQAQALIERWMPETERYSNA
>t2960 recJ, single-stranded DNA-specific exonuclease
MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLP
WQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGC
DNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAK
TLRIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLML
ALRTFLRDKGWFDERGIAPPNLAELLDLVALGTVADVVPLDANNRILTWQ
GLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERS
SETLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSG
RSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFG
ELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLF
DGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREV
ELAYKLDINEFRGNRSLQIIIDDIWPL
>t2638 recN, DNA repair protein
MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRA
EADMVRTGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSD
GRSRGFINGTAVPLSQLRELGQLLIQIHGQHTHQQLTKPEQQKSLLDSYA
NEAALAQQMAAHYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDF
NPQAGEFEQIDEEYKRLANSGQLLTTSQNALALLADGEDVNLQSQLYSAK
QLVSELVGMDSKLSGILDMLEEATIQLTEASDELRHYCERLDLDPNRLFE
LEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQQLDDQADSLETLTLAV
NKHHQQALETAQALHQQRQFYAQELGQLITESMHLLSMPHGLFTIDVKFD
EHHLSNDGADRVEFKVTTNPGQPLQPIAKVASGGELSRIALAIQVITARK
METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGH
QHFFVSKETDGAMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKEL
LAA
>t0278 recO, DNA repair protein RecO
MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGAL
QPFTPLLLRYSGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVL
EYETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTH
CAGSGERVDDTMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVD
TLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTKKD
>t3339 recQ, ATP-dependent DNA helicase
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTG
GGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQS
REQQLEVMAGCRTGQIRLLYIAPERLMLDNFLDHLAHWNPVLLAVDEAHC
ISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLND
PLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVE
DTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRR
CLEEKPAGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGLNDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDF
GHDKLKVYGMGREKSHEHWVSVIRQLIHLGLVMQNIAQHSALQLTDAARP
VLRGDVPLKLAVPRIVALKPRVMQKSFGGNYDRKLFAKLRKLRKAIADEE
NIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
>t2374 recR, recombination protein RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRA
MSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQ
FSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEG
EATANYIAELCAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKII
F
>t4483 relB, RelB protein
MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVT
LSDSEDALIQTVRERLSSPQKGIKVSLDDL
>t3384 rep, ATP-dependent DNA helicase
MRLNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHI
AAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALG
MKSNFSLFDDTDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPA
QAAAGAKGERDRIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDEV
RERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFTVVGDDDQSIYSW
RGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVFEK
RLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYR
GNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDS
AFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGY
DSLTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEM
RMKNVNQLFSWMTEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELD
QVQLMTLHASKGLEFLYVYMVGMEEGFLPHQSSIDEDNIEEERRLAYVGI
TRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAE
ERMQKGQSHLANLKAMMAAKRAKS
>t3382 rhlB, putative ATP-dependent RNA helicase
MSKTHLTEQKFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVA
GQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQI
HADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSAT
LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA
GASGHSISLACEEYALNLPAIESYIGHSIPVSKYNPEALMNDLPKPLRLT
RSRPGNGPRRAGAPRNRRRSG
>t2068 rhlE, putative ATP-dependent RNA helicase rhlE
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG
KTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK
YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQI
EILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEK
LLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLV
FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC
VDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGG
RGRGQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKPAGDKARPPRRPRR
ITPAQ
>t2602 rnhA, ribonuclease H
MLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTNNRMELM
AAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKN
VDLWKRLDAALGQHQIKWVWVKGHAGHPENERCDELARAAAMNPTQEDSG
YQAEA
>t0231 rnhB, ribonuclease HII
MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLNDSKKLS
EKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHI
APEYVLIDGNRCPELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAAL
DIVFPQYGFAQHKGYPTAFHLEKLAQYGATAHHRRSFAPVKRALGLVS
>t1302 rnt, ribonuclease T
MSDNAQLSGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQG
WLMPDMTLHFHVEPFAGANLQPEALAFNGIDPSNPLRGAVSEYEALHAIF
KMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFD
TAALSGLALGQTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVNR
WKRLGGWPLPLPTDK
>t0982 ruvA, Holliday junction DNA helicase
MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQEAIVFTH
FVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVN
AVEREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTS
PASPTSEDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIRDALR
AAL
>t0983 ruvB, Holliday junction DNA helicase
MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIFIQAAKR
RGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAM
LTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKI
DLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHM
GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGAISAEIAAQA
LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV
LEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPEMP
>t0979 ruvC, crossover junction endodeoxyribonuclease
MSIILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVDDLPSRLKLIYA
GVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF
EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITH
CHVSQNAMQMSESRLNLARGRLR
>t4291 samB, UV protection protein
MFALADVNSFYASCEKVFRPDLRNTPVVVLSNNDGCVIARSKEAKQLGIK
MGVPWFQLKTTEFPVPVVAFSSNYELYASMSNRVMAHLEELAPRVEQYSI
DEMFLDVRNIDSCIDFEDFGRQLREHVHSGTGLTIGVGMGPTKTLAKSAQ
WASKEWRQFEGVLALTSGNPKRTEKLLSLQPVDEIWGVGRRISKKLHTMG
ITTALQLARANPTFIRKNFSVVLERTVRELNGESCISLEEAPPPKQQIVC
SRSFGERVTTYEAMRQAVCQYAERAAEKLRGERQFCRHVAVFVKTSPFAV
NEPYYGNVASEKLTTPTQDTRDIIAAAVKALDRIWVKGHRYAKAGCMLND
FTPTGISQLNLFDEVQPHERSEQLMKVLDSINHSGMGKVWFAGRGIAPEW
QMKRELLSPAYTTRWAELPVARLR
>t0807 sbcB, exodeoxyribonuclease I
MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVF
YCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCV
VGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRP
EGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLVKT
RQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL
AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVK
LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVA
IFAEAEPFATSDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFV
DKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANELQM
LSQQYAEDKTKLGLLKSLWQYATEIV
>t2469 sbcC, exonuclease SbcC
MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAI
CLALYHETPRLNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNR
ARNRPDGNLQAPRVELARCSDGKIFADKVKDKLEMIATLTGLDYGRFTRS
MLLSQGQFAAFLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLEL
EKLQAQASGVALLADEQLQQLEASLQALTDEEKRLLADQQGQQQHLHWLT
RKNELHTELHARQQALYAAQEAREKAQPQLAALTLAQPARQLRPHWERIQ
EQTRAVERVRQHSDEVNARLQSAYRLRQRIRACAHRQFTQLNATGQRLKT
WLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSDMRQRDALP
PLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQKRQAQLQAAIA
RHHQEQTQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHL
QSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALR
GQLDALTQQLQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAG
WLTAAEEHEQQLDQLSQRHALQTQIAAHTEQVARFTAQIAQRQASLTADL
AQYTLSLPAPEDEASWLNERADEAKIWQQRQTEFADLQTQIDRLAPLLET
LPQTDTADSDDDVPLDNWRQTHDECVSLQSQLQTLQEQTTQEQQRAAEAI
AHFDAALKNSPFDSQATFLAALLDEETVTRLEKQQQTLESQLQQAKALSA
QSAQALADHQQQPPAGLDPTCTAEQLAQRLAQLAQQLRENTTRQGEIRQQ
IKQDADNRQRQRALMAEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQGL
TLDNLVWLANHQLTRLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLS
GGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDAALDALD
ALNASGKTIGVISHVEAMKERIPVQIKVKKNQWAWL
>t2468 sbcD, exonuclease SbcD
MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIF
DTDSPPSYARELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFL
NTTVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQ
QQLLHAIADYYQQQYQEACLLRGERKLPVIATGHLTTVGASKSDAVRDIY
IGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEHIRYCGSPIALSFDECG
KSKCVHLVTFDQGKWQSTESLAVPVTQLLAVLKGDLASITEQLEQWRGVE
QSPPVWLDIEITTDDYLHDIQRRIQALTESLPVEVLLVRRSREQRERSLA
NERRETLSELSVEEVFARRLALEALDTPQRERLNQLFSSTLYALNEEHEA
>t0813 sbmC, putative DNA gyrase inhibitory protein
MDYEIRQEQKRKIAGFHMVGPWEHTVKQGFEQLMTWVDRQRIVPVEWIAV
YYDNPDVVPAEKLRCDTVVSVAENFILPDNSEGVIVTAIEGGEYATAVAR
VEDRDFAKPWERFFDVLEQDSAYQIASAPCFETYLNNGMEDGYWDIEMYI
PVQRK
>t2178 seqA, seqA protein
MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTASAVKGTP
AAQPVAEAKPVNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLILTTLYSL
DHHAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNT
NTGRKCSMIEHIMQSMQFPAELIEKVCGTI
>t0267 srmB, ATP-dependent RNA helicase SrmB
MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT
GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA
KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFA
ERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLKHLLKQDDATR
SIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN
VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAIS
LVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVLA
KRAEKKKEKEKEKPRVKKRYRDTKNIGKRRKPSGTKMQEQSSEE
>t4161 ssb, single-strand DNA-binding protein
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMK
EQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTT
EINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGG
AQSRPQQSAPAPSNEPPMDFDDDIPF
>t4237 ssb, single strand binding protein
MASKGVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKK
ERTEWHRVVLYGKLAEIASEYLRKGSQVYIEGALRTRKWTDQSGVEKYTT
EVVVSQSGTMQMLGGRNSAGSGQQQGGWGQPQQPAAPSHSGMPPQQHPAN
EPPMDFDDDIPFAPFGHSVARHALYVLS
>t3877 tag, 3-methyladenine DNA glycosylase I
MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVL
KKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNAR
AWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALK
KRGFKFVGTTICYSFMQACGLVNDHITGCFCHPGEKHDSQIPE
>t3321 tatD, putative deoxyribonuclease
MFDIGVNLTSSQFAKDRDDVVARAFAAGVKGMLLTGTNIHESQQALKLAR
RYPHCWSTAGVHPHDSSQWSSASEDAIIALANQPEVVAIGECGLDFNRNF
STPQEQERAFQAQLQIAAELQMPIFMHCRDAHERFLALLDPWLDSLPGAI
LHCFTGSRQQMQACVDRGLYIGITGWVCDERRGLELRELLPFIPAEKLLI
ETDAPYLLPRDLTPKPTSRRNEPAYLPHILERIALWRGEDPQWLAAMTDA
NARTLFEVVF
>t2920 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t2986 tnpA, transposase for insertion sequence element IS200
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t0244 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t2054 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t0234 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t2909 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t0456 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t3447 tnpA, transposase
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
NILEAECCADHIHMLLEIPPKMSVSGFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPSSPFTG
RK
>t1154 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t1837 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t2995 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t1832 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t3019 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t2402 tnpA, transposase for insertion sequence element IS200
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPTKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t1735 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t1197 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t0593 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t2464 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t0388 tnpA, transposase for insertion sequence element IS200
MRDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIYMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t1554 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t2258 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t1105 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t1587 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t1681 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t1406 tnpA, transposase for insertion sequence element IS200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSLFTG
RK
>t4460 tnpA, transposase for insertion sequence element is200
MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNV
RILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKY
RNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTG
RK
>t1627 topA, DNA topoisomerase I, omega protein I
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADS
TSTKTAKKPKKDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLA
EKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQA
FEQPGELNINRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVA
VRLVVEREREIKAFVPEEFWEIDANTTTPSGEALPLQVTHQNDKPFRPVN
REQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYIGDNFGKKYLPD
NPNQYASKENSQEAHEAIRPSDVAVMAESLKDMEADAQKLYQLIWRQFVA
CQMTPAQYDSTTLTVGAGEFRLKARGRILRFDGWTKVMPALRKGDEDRTL
PAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASI
ISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSL
DQVANHQAEWKAVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDD
AETNALRAKRRCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFR
IKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTRKILRNGEVAP
PKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVEEL
YRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYVAAEKDGKATG
WSAFFVDGKWVEGKK
>t4234 topB, topoisomerase B
MRLVLCEKPSQGRDIAKFLGATQRGEGFLNGPGVTVTWARGHLLETAEPE
VYGEQYGKPWRTDVLPLLPQQWKLVVKADAKAQFAVINRLLKQVDEVVIA
TDADREGEVIARELLDYCKFQGRVFRLWMSALDDASIRSALADLWPSSRT
ESLYYAGVGRSRADWLIGMNLTRLFTLLGREAGIGNVLSVGRVQTPTLAI
VVKRDREIDNFVSKPYFEVIATMAVNGVLFPSKWVPAAQYCDEEKRCIQS
GVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMP
AQTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPAL
QPVVASLDTQFVSRIWNDKKITAHHGIIPTKHTGDLSKLSDAERNVYQLV
RLHYLAQFLPQMEIDVTEATFNIGGQLFRTRGNVLVKPGWKSLFGKMSED
DEDNTGETTLPAMQAGQVCQVQGAEQKVLQTKPPAPYNDGTLIAAMTNAA
AFVTDAALKKVLKENAGIGTEATRAGIIDTLLKRGFLVREKKTLKSTPLG
RNLVDVLPGTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQLVA
QGRSQPLTMQAPPSPPCPVCGGKTLQRNGKSGLFWGCLKYPECKGIVNNG
NKGPRGRRRKPSPA
>t1177 topB, DNA topoisomerase III
MRLFIAEKPSLGRAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQ
PDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHQAGEIIH
AGDPDREGQLLVDEVLDYLQLPAEKRQQVRRCLINDLNPQAVERAIDRLR
ANSDFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQT
PVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQ
DEEGRLLHRPLAEHVVNRINGQPALVTSYNDKRESESAPLPFSLSTLQIE
AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRQAVMNA
ISVHAPDLLPQPVVNPDTRNRCWDDKKVDAHHAIIPTARSSSVHLTENEA
KVYTLIARQYLMQFCPDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLL
GSKERDEENDGTPLSVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAM
TGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRSFLTKKGRYIHS
TDAGKALIHSLPEMAARPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLY
QLIDQAKRTPVKRFRGIVAPGGGEKKKSAPRKRAGKKSPPAEETGRQTE
>t0881 umuC, UmuC protein
MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIA
AGEPYFKQKERFRRSGVVCFSSNYELYADMSNQVMTTLEEMVPRVEIYSI
DEAFCDLTGVRNCRDLTDFGHEIRATVLKRTHLTVGVGIAQTKTLAKLAN
HAAKKWQRQTDGVVDLSNIDRQRRLLALIPVEDVWGVGRRISKKLNALGI
KTALDLSEQSTWIIRKHFNVVLERTVRELRGEPCLELEEFAPAKQEIVCS
RSFGERVTDYEEMRQAVYSYAARAAEKLRGEHQYCCFISTFVKTSPFALN
EPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIWRDGHRYQKAGVMLGGF
FSQGVAQLNLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFAGQGMSQQW
AMKREMLSPRYTTRYSDLLRVK
>t0263 ung, uracil-DNA glycosylase
MATELTWHDVLADEKQQPYFINTLHTVAGERQSGITVYPPQKDVFNAFRF
TELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAPPPSLVNMYKELEASI
PGFVRPAHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVIS
LINQHREGVVFLLWGSHAQKKGAIIDPQRHHILKAPHPSPLSAHRGFFGC
NHFALTNQWLEQHGEKTIDWTPVLPAESE
>t4160 uvrA, excision nuclease subunit A
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
ITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLML
LAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTI
EVVIDRFKVRNDLSQRLAESFETALELSGGTAVVADMDDEKAEELLFSAN
FACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPDL
SLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVDAPWASLSANVHKVVLYG
SGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKF
ISNRPCASCEGTRLNREARHVFVENTPLPAISDMSIGHAMDFFTNLKLSG
QRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQ
IGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDA
IRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV
PKQRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLI
NDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSN
PATYTGVFTPVRELFAGVPESRSRGYTPGRFSFNVRGGRCEACQGDGVIK
VEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFF
DAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTG
QTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVAGTPETVAECEASHTARFLKPMLK
>t2089 uvrB, excision nuclease ABC subunit B
MSKPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIA
NVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA
YVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGD
PDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVI
DIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTVPRYTIYPKTHYV
TPRERILQAMEEIKDELADRRKVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM
YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE
LEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL
VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA
ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG
QNIAKTKAKGKGKGRSTAKAGIVELDMTPKALQQKIHELEEQMMQHAQNL
EFEEAAQIRDQLHQLRELFIAAS
>t0930 uvrC, excinuclease ABC subunit C
MSEIFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSN
LASRKTEALVAQIQHIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDK
SYPFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFP
IRQCENSVYRNRSRPCLQYQIGRCLGPCVAGLVSEEEYTQQVEYVRLFLS
GKDDQVLTQLIARMEKASQDLAFEEAARIRDQIQAVRRVTEKQFVSNAGD
DLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELGEVVETFV
GQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRRIHVQTKPRGD
RARYLKLARTNAATALVTKLSQQSTITQRLTALATVLKLPAIKRMECFDI
SHTMGEQTVASCVVFDANGPLRAEYRRYNIAGITPGDDYAAMNQVLRRRY
GKAIEESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGA
DRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRA
KVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGL
AEKIFWSLKH
>t3346 uvrD, DNA helicase II
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVE
NNSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRA
HHMDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQK
DEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELW
LNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDTGKVMIVGDDD
QSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSVANALIENN
NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAQC
AILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN
RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGE
KGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTW
QDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGWRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATV
SRPVSHQRMGTPLAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQV
AFQGQGIKWLVAAYAKLETV
>t0887 vsr, patch repair protein
MADVHDKATRSKNMRAIATRDTAIEKRLAGLLSAQGITFHTQDTTLPGKP
DFVVNDYDCVIFTHGCFWHHHHCYLFKVPATRTAFWLEKIGKNVERDERD
IQRLQALGWRVLIVWECALRGRAKLSDAALAERLEEWICGGGASAQIDTQ
GIHLLA
>t0764 wcaH, putative O-antigen biosynthesis protein
MTMFLRQEDFAAVVRTTPLISLDFIVENGQGEILLGQRLNRPAQGYWFVP
GGRVCKDETLEAAFARLTQAELGVRLPLAAGTFYGVWQHFYDDNFSSEDF
STHYIVLGFRLRVAESDLRLPDAQHGSYRWLTPEQLLAGDNVHENSRAYF
SPDAPAVGL
>t3348 xerC, integrase/recombinase
MTEVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSW
QQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPA
KGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAMLEVMYGAGLR
LSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL
FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFAT
HMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK
>t2962 xerD, site-specific integrase/recombinase
MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATA
QADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQL
ASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVS
ELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL
LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF
ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA
>t0345 xseA, exodeoxyribonuclease large subunit
MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFT
LKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAE
SMQPAGEGLLQQKYEQLKAKLHAEGLFDQQHKQPLPSPAHCVGVITSKTG
AALHDILHVLKRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANTRGECDV
LIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHETDVTIADFVAD
LRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIF
HRLQQQHPQLRLARQQTALERLRQRMGFALEARIKQATQRQQRVSQRLSQ
QNPQPRIHRVQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA
TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT
>t2439 xseB, exodeoxyribonuclease small subunit
MPKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQ
AKLQQAEQRVQILLSDNEEASPEPFIADNE
>t1181 xthA, exodeoxyribonuclease III
MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDEMFPLEEVAKL
GYNVFYHGQKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPL
GNITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMG
DMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFR
QANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYDI
RSMEKPSDHAPVWATFRV
>t4614 yafM, conserved hypothetical protein
MSNYRRYYINGGTWFFTVNLKNRKSDLLVRQIAELRSAIRRVKNTKPFQI
DAFVVLPEHLHCIWTLPENDCDFSSRWRELKKLFTKSIMRHDVWQPRFWE
HTIRDEKDFRRHVDYLYFNPVKHGWVRRVQDWPFSTFHRDVRNGVYPVDW
AGEVRDLDAGE
>t2407 ybaV, putative exported protein
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAA
LPAKASDDEGTRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKT
VDDLKQVPGMGSALVERNLAVLTL
>t2393 ybaZ, putative methylated-DNA methyltransferase
MLVSCASGLSSPLIPDYPEALTQDSIMDIQDTFPQRVWQIVASIPEGFVT
TYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGAISLTGPDL
QRQRQALLAEGVVVSGSGQIDLQRYRWVY
>t1972 ycaJ, conserevd hypothetical protein
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL
HSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQ
NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELN
SALLSRARVYLLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAI
AELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTEIAGERSARFDN
KGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVY
TAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYA
AGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR
>t0631 yejH, putative helicase
MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARG
RVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSV
ARNLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLT
ATPFRLGKGWIYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPE
RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAQ
TRKGVMIFAATVEHAKEIVGLLPADDAALITGDTPGPERDALIDNFKAQR
FRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD
CLILDYAGNPHDLYAPEVGSPKGKSDNVPVQVFCPACGFANTFWGKTTAD
GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
CDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDED
GADVSERFRLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALL
RHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>t0382 yffH, conserved hypothetical protein
MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATI
LLYNSTKKTVVLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKE
AIEETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVED
EEIEVLELPFSRALEMVRSGEIRDGKTVLLLNYLQTSHLMD
>t3301 yhdJ, putative adenine-specific DNA-modification methylase
MKAECEPQYFGDESKKIIHGDALTELKKLPSESIDLIFADPPYNIGKDFD
GMVESWDEASFLAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRT
LFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKNPKSYTFNRDAILVE
TTTGAKRALIDYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQKP
SALLKRIILASSNPSDTVLDPFAGSFTTGAVAAASGRKFIGIELNNEYVK
MGLRRLSVTSHYSENELAKVKKRKTQNLSKKQRNVGINALSSEK
>t3950 yhhF, conserved hypothetical protein
MKKPTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV
MVDAHCLDCFAGSGALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKA
NNARVVNTNTLAFLSQPGTPHHVVFVDPPFRKGLLEETLQLLETQGWLAD
DALIYVESEVENGLPPVPANWALYREKVAGQVAYRLYQRDAQGENDVD
>t3830 yibL, conserved hypothetical protein
MKEVEKNEIKRLSDRLDAIRHQQAGLSLVESADKYAELEKEKETLEAEII
RLREVHSQKLSKEAQKLMNLPFRRAITKKEQADMGKLKKSVRGLIVVHPM
TALGREMGLKEMTGFAKSEF
>t3465 yjaD, conserved hypothetical protein
MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRALRIGEWQ
GEPVWLVLQHRRHDMGSVRQVIDQDAGLFQLAGRGVQLAEFYRSHKFCGY
CGHPMHPSKTEWAMLCSHCRDRYYPQIAPCIIVAIRREDSILLARHVRHR
NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSL
MTAFMAEYDSGEIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA
MCRAEYD
>t3185 yraN, conserved hypothetical protein
MAQIPARGDCSRQLTRKQAGDAWEAAARLWLESKGLRFIAANVRERGGEI
DLIMRDGKTTVFVEVRYRRSGLYGGAAASVTRSKQHKLLHTARLWLARQN
GSFDTVDCRFDVLAFTGNEIEWFRDAFNDHS
>t4101 yrdD, conserved hypothetical protein
MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYVRPLKSQ
ADGHIVKILEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPD
ETAIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPEC
HYSLLIEKKTAQGVKRFCASKQCGKPVPVE
>t4012 yrfE, putative NUDIX hydrolase
MTTDYTAKILTMSKSLQKPTILKVETVAQSRLFNVESVDLEFSNGVRRVY
ERMRPSTREAVMIVPIVDEHLILIREYAVGTESYELGFSKGLIDPGETVF
EAANRELKEEVGFGAHNLTFLKKLSMAPSYFSSKMNIVVAEDLYPESLEG
DEPEPLPQVRWPLAHLMDLLEDPDFNEARNVSALFLVREWLKAQGRIA