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2024-05-05 10:41:07

Gene list

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COG category: Replication, recombination and repair
Organism: Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2

Number of genes found: 198

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Salmonella enterica subsp. enterica serovar Typhi Ty2, Ty2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA t3400 probable bacteriophage integrasechromosome CDS3501128 1053 - 0.48433
NA t2647 hypothetical proteinchromosome CDS2735202 1032 + 0.44186
NA t4607 conserved hypothetical proteinchromosome CDS4757469 774 + 0.591731
NA t1685 putative MutT-family proteinchromosome CDS1748488 462 + 0.521645
NA t0568 conserved hypothetical proteinchromosome CDS644093 426 - 0.495305
NA t3409 DNA adenine methylasechromosome CDS3505322 858 + 0.463869
NA t4520 protein kinasechromosome CDS4669143 1074 - 0.349162
NA t1384 hypothetical proteinchromosome CDS1434614 1770 + 0.585311
NA t1188 conserved hypothetical proteinchromosome CDS1256994 909 - 0.546755
NA t1994 conserved hypothetical proteinchromosome CDS2051860 1659 - 0.556962
NA t1896 putative bacteriophage proteinchromosome CDS1952716 261 - 0.421456
NA t0102 putative IS element transposasechromosome CDS116022 1209 + 0.489661
NA t0518 conserved hypothetical proteinchromosome CDS590728 555 + 0.544144
NA t1180 putative MutT-family proteinchromosome CDS1248331 417 - 0.570743
NA t1052 conserved hypothetical proteinchromosome CDS1136416 579 - 0.587219
NA t4099 conserved hypothetical proteinchromosome CDS4237346 1125 + 0.536
NA t4280 hypothetical proteinchromosome CDS4446878 921 + 0.438654
NA t1718 conserved hypothetical proteinchromosome CDS1785445 798 - 0.530075
NA t1056 putative ATP-dependent helicasechromosome CDS1139104 1911 + 0.560963
NA t3198 ATP-dependent RNA helicasechromosome CDS3287491 1941 - 0.573931
NA t4330 putative exonucleasechromosome CDS4486672 585 - 0.439316
NA t2953 hypothetical proteinchromosome CDS3043685 1464 - 0.477459
NA t2160 probable DNA recombinasechromosome CDS2223360 567 - 0.506173
NA t4357 probable phage integrasechromosome CDS4511590 1014 + 0.455621
NA t4518 integrasechromosome CDS4666742 1266 + 0.496051
NA t3948 putative membrane proteinchromosome CDS4089049 372 + 0.532258
NA t2424 hypothetical proteinchromosome CDS2497128 285 - 0.410526
NA t1926 putative DNA methylasechromosome CDS1969578 882 + 0.530612
NA t1476 hypothetical proteinchromosome CDS1525124 705 + 0.4
NA t4367 hypothetical proteinchromosome CDS4521199 783 + 0.586207
NA t3191 conserved hypothetical proteinchromosome CDS3281393 318 + 0.553459
NA t4492 putative membrane proteinchromosome CDS4641479 447 - 0.447427
NA t1986 probable integrase remnantchromosome CDS2043456 378 + 0.460317
NA t2657 putative reverse transcriptasechromosome CDS2745590 774 - 0.404393
NA t2667 putative DNA-invertasechromosome CDS2754056 573 - 0.509599
NA t3106 conserved hypothetical proteinchromosome CDS3190731 633 - 0.530806
NA t4329 DNA adenine methylasechromosome CDS4485815 861 - 0.465738
NA t4338 phage integrasechromosome CDS4489831 1026 + 0.495127
NA t1917 putative DNA replication proteinchromosome CDS1963165 750 - 0.529333
NA t2913 conserved hypothetical proteinchromosome CDS3004308 531 - 0.506591
NA t2839 conserved hypothetical proteinchromosome CDS2912842 918 - 0.529412
NA t0101 putative IS element transposasechromosome CDS115562 441 - 0.45805
NA t0361 conserved hypothetical proteinchromosome CDS430548 726 + 0.53719
NA t1346 DNA-invertasechromosome CDS1408218 573 - 0.450262
NA t4519 protein kinasechromosome CDS4668070 1077 - 0.363045
NA t3009 conserved hypothetical proteinchromosome CDS3099846 417 + 0.551559
NA t0872 hypothetical proteinchromosome CDS973891 522 - 0.425287
NA t4227 DNA helicasechromosome CDS4395333 1365 + 0.530403
NA t4355 putative DNA helicasechromosome CDS4508342 1512 + 0.508598
ada t0599 ADA regulatory proteinchromosome CDS683567 1062 + 0.609228
alkA t0748 DNA-3-methyladenine glycosidase IIchromosome CDS833616 870 + 0.611494
alkB t0600 AlkB proteinchromosome CDS684631 651 + 0.591398
dam t4022 DNA adenine methylasechromosome CDS4175716 837 + 0.492234
dcm t0886 DNA-cytosine methyltransferasechromosome CDS987120 1431 + 0.540881
dinP t2537 hypothetical protein DinPchromosome CDS2612961 1056 - 0.514205
dnaA t3681 chromosomal replication initiator proteinchromosome CDS3790618 1401 + 0.529622
dnaB t4152 replicative DNA helicasechromosome CDS4296365 1416 + 0.550141
dnaC t4586 probable DNA replication proteinchromosome CDS4742281 738 - 0.51084
dnaE t0232 DNA polymerase III, alpha chainchromosome CDS266421 3483 + 0.558714
dnaG t3130 DNA primasechromosome CDS3217501 1746 + 0.517182
dnaN t3682 DNA polymerase III beta-subunitchromosome CDS3792023 1101 + 0.563124
dnaQ t2601 DNA polymerase III epsilon subunitchromosome CDS2678123 732 - 0.516393
dnaX t2376 DNA polymerase III subunits gamma and tauchromosome CDS2445416 1929 - 0.589425
endA t3005 endonuclease Ichromosome CDS3096585 708 + 0.560734
exo t2880 5'-3' exonucleasechromosome CDS2965030 816 + 0.556373
exoX t0999 exodeoxyribonuclease Xchromosome CDS1089074 699 - 0.519313
fis t3300 Fis DNA-binding proteinchromosome CDS3395358 297 + 0.464646
gyrA t0592 DNA gyrase subunit Achromosome CDS670704 2637 + 0.555176
gyrB t3684 DNA gyrase subunit Bchromosome CDS3794423 2415 + 0.556522
helD t1845 helicase IVchromosome CDS1903289 2055 - 0.549392
hepA t0099 probable ATP-dependent helicase HepAchromosome CDS109791 2907 - 0.570347
himA t1220 integration host factor alpha-subunitchromosome CDS1287512 300 + 0.483333
himD t1952 integration host factor beta-subunitchromosome CDS2002662 285 - 0.501754
holA t2221 DNA polymerase III, delta subunitchromosome CDS2287802 1032 + 0.575581
holB t1719 DNA polymerase III, delta' subunitchromosome CDS1786253 1005 - 0.58607
holC t4511 DNA polymerase III, chi subunitchromosome CDS4658845 483 - 0.536232
holD t4600 DNA polymerase III, psi subunitchromosome CDS4751758 438 + 0.59589
hrpA t1544 ATP-dependent helicase HrpAchromosome CDS1598822 3903 - 0.536767
hrpB t0197 ATP-dependent helicase HrpBchromosome CDS222741 2442 + 0.595823
hupA t3461 histone like DNA-binding protein HU-alphachromosome CDS3551212 273 - 0.47619
hupB t2409 DNA-binding protein HU-betachromosome CDS2480576 273 - 0.494505
int t4371 bacteriophage integrasechromosome CDS4524556 1260 - 0.566667
int t1929 integrasechromosome CDS1970990 1341 + 0.488441
ligA t0431 DNA ligasechromosome CDS503087 2016 + 0.572421
mfd t1704 transcription-repair coupling factorchromosome CDS1769354 3447 + 0.56832
mod t2507 Type III restriction-modification system StyLTI enzyme modchromosome CDS2584244 1959 - 0.466565
mug t3132 G/U mismatch-specific DNA glycosylasechromosome CDS3221367 507 - 0.538462
mutH t2914 DNA mismatch repair proteinchromosome CDS3005521 696 + 0.579023
mutL t4410 DNA mismatch repair proteinchromosome CDS4560944 1857 + 0.58266
mutM t3792 formamidopyrimidine-DNA glycosylasechromosome CDS3911856 810 + 0.546914
mutS t2810 DNA mismatch repair proteinchromosome CDS2886601 2568 + 0.569704
mutT t0141 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS162959 396 + 0.520202
mutY t3023 A/G-specific adenine glycosylasechromosome CDS3110575 1053 + 0.548908
nei t2148 endonuclease VIIIchromosome CDS2211593 792 - 0.52399
nfi t3463 putative endonucleasechromosome CDS3552303 672 - 0.58631
nfo t0652 endonuclease IVchromosome CDS734840 858 - 0.537296
nth t1321 endonuclease IIIchromosome CDS1382732 636 - 0.522013
ntpA t0977 DATP pyrophosphohydrolasechromosome CDS1066514 453 + 0.529801
ogt t1563 O6-methylguanine-DNA-alkyltransferasechromosome CDS1624332 516 + 0.552326
parC t3095 topoisomerase IV subunit Achromosome CDS3179945 2259 - 0.55954
parE t3102 topoisomerase IV subunit Bchromosome CDS3186959 1893 - 0.555732
phrB t2167 deoxyribodipyrimidine photolyasechromosome CDS2229355 1422 - 0.567511
pin t3437 DNA-invertasechromosome CDS3526780 567 + 0.513228
polA t3621 DNA polymerase Ichromosome CDS3722073 2787 - 0.53929
polB t0100 DNA polymerase IIchromosome CDS112871 2352 - 0.565901
ppdB t2907 prepilin peptidase dependent protein B precursorchromosome CDS2998240 564 - 0.535461
priA t3523 primosomal protein replication factorchromosome CDS3625514 2199 + 0.593452
priB t4443 primosomal replication protein Nchromosome CDS4589362 315 + 0.530159
radC t3789 putative DNA repair proteinchromosome CDS3910451 666 + 0.527027
rci t4252 shufflon-specific DNA recombinasechromosome CDS4419989 1152 + 0.49566
rdgC t2472 recombination associated protein RdgCchromosome CDS2545831 846 + 0.546099
recA t2730 recA proteinchromosome CDS2813610 1062 - 0.544256
recB t2902 exonuclease V subunitchromosome CDS2987540 3546 - 0.556402
recC t2904 exonuclease V subunitchromosome CDS2994144 3372 - 0.537367
recD t2901 exonuclease V alpha-subunitchromosome CDS2985708 1836 - 0.585512
recF t3683 recF proteinchromosome CDS3793321 1074 + 0.546555
recG t3774 ATP-dependent DNA helicasechromosome CDS3894835 2082 - 0.582133
recJ t2960 single-stranded DNA-specific exonucleasechromosome CDS3049966 1734 - 0.572664
recN t2638 DNA repair proteinchromosome CDS2714398 1662 + 0.54633
recO t0278 DNA repair protein RecOchromosome CDS316849 729 + 0.554184
recQ t3339 ATP-dependent DNA helicasechromosome CDS3440746 1830 - 0.551366
recR t2374 recombination protein RecRchromosome CDS2444436 606 - 0.613861
relB t4483 RelB proteinchromosome CDS4630414 243 + 0.502058
rep t3384 ATP-dependent DNA helicasechromosome CDS3485500 2025 - 0.528395
rhlB t3382 putative ATP-dependent RNA helicasechromosome CDS3482595 1266 + 0.546604
rhlE t2068 putative ATP-dependent RNA helicase rhlEchromosome CDS2130325 1368 - 0.584795
rnhA t2602 ribonuclease Hchromosome CDS2678918 468 + 0.502137
rnhB t0231 ribonuclease HIIchromosome CDS265801 597 + 0.561139
rnt t1302 ribonuclease Tchromosome CDS1366107 648 - 0.529321
ruvA t0982 Holliday junction DNA helicasechromosome CDS1070157 612 + 0.553922
ruvB t0983 Holliday junction DNA helicasechromosome CDS1070777 1011 + 0.569733
ruvC t0979 crossover junction endodeoxyribonucleasechromosome CDS1067773 522 + 0.55364
samB t4291 UV protection proteinchromosome CDS4456072 1275 - 0.50902
sbcB t0807 exodeoxyribonuclease Ichromosome CDS901447 1431 - 0.539483
sbcC t2469 exonuclease SbcCchromosome CDS2540225 3111 + 0.585664
sbcD t2468 exonuclease SbcDchromosome CDS2539026 1203 + 0.558603
sbmC t0813 putative DNA gyrase inhibitory proteinchromosome CDS911282 468 + 0.508547
seqA t2178 seqA proteinchromosome CDS2245352 543 - 0.510129
srmB t0267 ATP-dependent RNA helicase SrmBchromosome CDS305010 1335 - 0.548315
ssb t4237 single strand binding proteinchromosome CDS4406801 537 + 0.540037
ssb t4161 single-strand DNA-binding proteinchromosome CDS4306060 531 + 0.59322
tag t3877 3-methyladenine DNA glycosylase Ichromosome CDS4003989 582 - 0.517182
tatD t3321 putative deoxyribonucleasechromosome CDS3422245 783 - 0.541507
tnpA t3447 transposasechromosome CDS3536217 459 + 0.466231
tnpA t0388 transposase for insertion sequence element IS200chromosome CDS464716 459 + 0.453159
tnpA t2258 transposase for insertion sequence element IS200chromosome CDS2323397 459 - 0.459695
tnpA t2402 transposase for insertion sequence element IS200chromosome CDS2473258 459 - 0.45098
tnpA t0593 transposase for insertion sequence element IS200chromosome CDS673526 459 + 0.457516
tnpA t2054 transposase for insertion sequence element is200chromosome CDS2116578 459 - 0.457516
tnpA t1154 transposase for insertion sequence element IS200chromosome CDS1220753 459 + 0.457516
tnpA t2995 transposase for insertion sequence element IS200chromosome CDS3085185 459 - 0.459695
tnpA t1587 transposase for insertion sequence element IS200chromosome CDS1647002 459 + 0.457516
tnpA t1554 transposase for insertion sequence element IS200chromosome CDS1613303 459 - 0.459695
tnpA t4460 transposase for insertion sequence element is200chromosome CDS4605008 459 - 0.457516
tnpA t1735 transposase for insertion sequence element IS200chromosome CDS1802131 459 - 0.459695
tnpA t2464 transposase for insertion sequence element IS200chromosome CDS2534377 459 - 0.459695
tnpA t1832 transposase for insertion sequence element IS200chromosome CDS1895018 459 - 0.457516
tnpA t1681 transposase for insertion sequence element IS200chromosome CDS1745409 459 - 0.457516
tnpA t2909 transposase for insertion sequence element IS200chromosome CDS2999510 459 - 0.459695
tnpA t1197 transposase for insertion sequence element IS200chromosome CDS1265128 459 + 0.459695
tnpA t1105 transposase for insertion sequence element IS200chromosome CDS1189317 459 + 0.459695
tnpA t0456 transposase for insertion sequence element IS200chromosome CDS528278 459 + 0.459695
tnpA t2920 transposase for insertion sequence element IS200chromosome CDS3012372 459 - 0.457516
tnpA t3019 transposase for insertion sequence element is200chromosome CDS3108025 459 + 0.459695
tnpA t1837 transposase for insertion sequence element IS200chromosome CDS1898230 459 - 0.457516
tnpA t0244 transposase for insertion sequence element IS200chromosome CDS280079 459 - 0.457516
tnpA t1406 transposase for insertion sequence element IS200chromosome CDS1450560 459 + 0.457516
tnpA t2986 transposase for insertion sequence element IS200chromosome CDS3077594 459 - 0.459695
tnpA t0234 transposase for insertion sequence element IS200chromosome CDS271067 459 + 0.455338
topA t1627 DNA topoisomerase I, omega protein Ichromosome CDS1685267 2598 - 0.54157
topB t1177 DNA topoisomerase IIIchromosome CDS1244535 1950 + 0.56
topB t4234 topoisomerase Bchromosome CDS4403378 1995 + 0.528822
umuC t0881 UmuC proteinchromosome CDS981739 1269 + 0.544523
ung t0263 uracil-DNA glycosylasechromosome CDS301952 690 - 0.553623
uvrA t4160 excision nuclease subunit Achromosome CDS4302987 2826 - 0.573248
uvrB t2089 excision nuclease ABC subunit Bchromosome CDS2150027 2022 - 0.553907
uvrC t0930 excinuclease ABC subunit Cchromosome CDS1024005 1833 + 0.534643
uvrD t3346 DNA helicase IIchromosome CDS3447448 2163 - 0.577439
vsr t0887 patch repair proteinchromosome CDS988531 471 + 0.56051
wcaH t0764 putative O-antigen biosynthesis proteinchromosome CDS854333 480 + 0.602083
xerC t3348 integrase/recombinasechromosome CDS3450462 903 - 0.566999
xerD t2962 site-specific integrase/recombinasechromosome CDS3052442 897 - 0.530658
xseA t0345 exodeoxyribonuclease large subunitchromosome CDS412555 1350 - 0.582963
xseB t2439 exodeoxyribonuclease small subunitchromosome CDS2511234 243 + 0.54321
xthA t1181 exodeoxyribonuclease IIIchromosome CDS1248820 807 - 0.521685
yafM t4614 conserved hypothetical proteinchromosome CDS4765555 486 + 0.485597
ybaV t2407 putative exported proteinchromosome CDS2477890 375 - 0.522667
ybaZ t2393 putative methylated-DNA methyltransferasechromosome CDS2463894 390 + 0.558974
ycaJ t1972 conserevd hypothetical proteinchromosome CDS2027028 1344 - 0.568452
yejH t0631 putative helicasechromosome CDS712019 1761 - 0.570131
yffH t0382 conserved hypothetical proteinchromosome CDS456842 576 + 0.487847
yhdJ t3301 putative adenine-specific DNA-modification methylasechromosome CDS3395740 885 + 0.456497
yhhF t3950 conserved hypothetical proteinchromosome CDS4089701 597 - 0.564489
yibL t3830 conserved hypothetical proteinchromosome CDS3953588 363 - 0.506887
yjaD t3465 conserved hypothetical proteinchromosome CDS3554089 774 - 0.555556
yraN t3185 conserved hypothetical proteinchromosome CDS3277989 396 + 0.558081
yrdD t4101 conserved hypothetical proteinchromosome CDS4238942 543 + 0.528545
yrfE t4012 putative NUDIX hydrolasechromosome CDS4165345 597 + 0.522613