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2024-05-15 04:10:50

Gene list

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COG category: Replication, recombination and repair
Organism: Pelodictyon luteolum DSM 273, DSM 273

Number of genes found: 100

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Pelodictyon luteolum DSM 273, DSM 273
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Plut_1196 conserved hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS1354358 1047 + 0.614136
NA Plut_1883 Site-specific recombinase XerD-likeSubName: Full=Site-specific recombinase XerD-like protein; chromosome CDS2092433 1950 + 0.617949
NA Plut_1171 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1328738 249 - 0.477912
NA Plut_1191 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1350865 537 - 0.55121
NA Plut_1087 HhH-GPDSubName: Full=HhH-GPD; chromosome CDS1235638 936 + 0.55235
NA Plut_1301 Protein of unknown function DUF196RecName: Full=CRISPR-associated endoribonuclease Cas2; EC=3.1.-.-; chromosome CDS1472725 291 + 0.463918
NA Plut_1612 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1803239 1722 + 0.594657
NA Plut_0995 ATPase involved in DNA repair-likeSubName: Full=ATPase involved in DNA repair-like protein; chromosome CDS1123367 2733 + 0.613977
NA Plut_0996 Exodeoxyribonuclease V, RecC subunitSubName: Full=DNA helicase/exodeoxyribonuclease V, gamma subunit; EC=3.1.11.5; chromosome CDS1126089 3228 + 0.625155
NA Plut_0528 ExonucleaseSubName: Full=Exonuclease; chromosome CDS620342 594 - 0.555556
NA Plut_0453 DNA helicase IISubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; chromosome CDS531235 2208 + 0.595562
NA Plut_0817 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS937023 804 + 0.560945
NA Plut_1298 CRISPR-associated protein TM1801SubName: Full=CRISPR-associated protein, Csd2 family; chromosome CDS1470144 900 + 0.474444
NA Plut_0587 DEAD/DEAH box helicase-likeRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS686304 1773 + 0.594473
NA Plut_0275 RecA DNA recombination proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS280738 1047 + 0.597899
NA Plut_1830 transposase subunitSubName: Full=Transposase subunit; chromosome CDS2043341 1581 + 0.55661
NA Plut_1766 SMF proteinSubName: Full=SMF protein; chromosome CDS1977136 861 + 0.629501
NA Plut_0107 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS123125 471 - 0.543524
NA Plut_2073 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS2304204 2409 + 0.592777
NA Plut_1981 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS2205363 1881 - 0.606592
NA Plut_0948 Primosomal protein nSubName: Full=Primosomal protein n; chromosome CDS1072352 2433 - 0.633374
NA Plut_0630 Transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS732901 3330 - 0.6003
NA Plut_0590 Tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS690247 921 - 0.609121
NA Plut_1300 Protein of unknown function DUF48RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS1471690 1032 + 0.494186
NA Plut_1462 Helicase RecD/TraASubName: Full=Helicase RecD/TraA; EC=3.1.11.5; chromosome CDS1645129 2220 - 0.608108
NA Plut_0997 Exodeoxyribonuclease V, beta subunitSubName: Full=Exodeoxyribonuclease V, beta subunit; chromosome CDS1129313 3612 + 0.608804
NA Plut_0321 Methylpurine-DNA glycosylase (MPG)RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS332099 591 - 0.622673
NA Plut_1724 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS1932397 309 + 0.569579
NA Plut_0391 Excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS464610 2088 + 0.624042
NA Plut_0833 DNA-damage-inducible protein JSubName: Full=DNA-damage-inducible protein J; chromosome CDS951196 264 - 0.462121
NA Plut_1957 Histone-like DNA-binding proteinSubName: Full=Histone-like DNA-binding protein; chromosome CDS2176195 276 - 0.554348
NA Plut_0994 DNA repair exonucleaseSubName: Full=DNA repair exonuclease; chromosome CDS1122180 1191 + 0.61377
NA Plut_0164 Exonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS171696 309 - 0.540453
NA Plut_1837 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2049551 339 + 0.469027
NA Plut_0340 Exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; chromosome CDS348884 1209 - 0.617039
NA Plut_0522 DNA photolyase, class 2SubName: Full=Deoxyribodipyrimidine photo-lyase type II; EC=4.1.99.3; chromosome CDS614930 1488 - 0.620296
NA Plut_0643 putative transposaseSubName: Full=Putative transposase; chromosome CDS747678 300 - 0.506667
NA Plut_1681 Endonuclease III/NthRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1887011 639 + 0.588419
NA Plut_0005 DNA-directed DNA polymerase BRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS4402 2379 - 0.498108
NA Plut_0462 RecJ exonucleaseSubName: Full=Exonuclease RecJ; EC=3.1.-.-; chromosome CDS542864 1716 + 0.601981
NA Plut_1855 conserved hypothetical transposaseSubName: Full=Conserved hypothetical transposase; chromosome CDS2066944 984 - 0.535569
NA Plut_1667 ATP-requiring DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; Flags: Precursor; chromosome CDS1870374 1848 - 0.607684
NA Plut_1662 Excinuclease ABC, A subunitSubName: Full=Excinuclease ABC subunit A; chromosome CDS1864871 2877 + 0.613486
NA Plut_0987 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS1115046 1257 - 0.584726
NA Plut_0279 Helix-hairpin-helix DNA-binding, class 1SubName: Full=Helix-hairpin-helix DNA-binding, class 1; chromosome CDS284727 513 - 0.576998
NA Plut_2133 chromosomal replication initiator protein, DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS2363373 1470 + 0.496599
NA Plut_0485 Excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS566446 1887 - 0.584526
NA Plut_0854 invertase/recombinase like proteinSubName: Full=Invertase/recombinase like protein; chromosome CDS972563 597 + 0.552764
NA Plut_1824 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2036179 1884 - 0.527601
NA Plut_1284 RecR proteinRecName: Full=Recombination protein RecR; chromosome CDS1452520 615 - 0.61626
NA Plut_0707 NUDIX/MutT family proteinSubName: Full=NUDIX/MutT family protein; chromosome CDS820128 405 + 0.590123
NA Plut_0260 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; chromosome CDS266359 1041 - 0.581172
NA Plut_1200 DNA-directed DNA polymeraseSubName: Full=DNA-directed DNA polymerase; EC=2.7.7.7; chromosome CDS1358604 1299 - 0.641263
NA Plut_0822 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS939792 3198 - 0.513446
NA Plut_0998 Exodeoxyribonuclease V, alpha subunitSubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5; chromosome CDS1132921 1761 + 0.633731
NA Plut_1624 site-specific recombinase, phage/XerD familyRecName: Full=Tyrosine recombinase XerC; chromosome CDS1819515 1026 - 0.545809
NA Plut_0436 Transposase-likeSubName: Full=Transposase, IS4 family; chromosome CDS513258 1542 - 0.550584
NA Plut_1259 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1420206 462 + 0.575758
NA Plut_0650 RNA-directed DNA polymeraseSubName: Full=RNA-directed DNA polymerase; EC=2.7.7.49; chromosome CDS751910 1488 - 0.558468
NA Plut_1699 DNA ligase (NAD+)RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1905646 2034 - 0.627335
NA Plut_1619 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1814224 1035 - 0.609662
NA Plut_1645 DNA polymerase ASubName: Full=DNA polymerase A; EC=2.7.7.7; chromosome CDS1845351 2838 + 0.595842
NA Plut_0732 ATPaseSubName: Full=Recombination protein MgsA; chromosome CDS845042 1374 + 0.613537
NA Plut_1010 DNA polymerase III, epsilon subunitSubName: Full=DNA polymerase III, epsilon subunit; chromosome CDS1148798 711 + 0.589311
NA Plut_0447 DNA mismatch repair protein MutS-likeRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS523612 2370 + 0.624051
NA Plut_1397 invertase/recombinase like proteinSubName: Full=Invertase/recombinase like protein; chromosome CDS1578503 531 - 0.580038
NA Plut_1344 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1518951 798 + 0.572682
NA Plut_1831 ATPaseSubName: Full=ATPase; chromosome CDS2044940 741 + 0.557355
NA Plut_0113 AP endonuclease, family 1SubName: Full=AP endonuclease, family 1; EC=4.2.99.18; chromosome CDS128038 804 + 0.55597
NA Plut_1758 DNA recombination protein, RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1968437 603 - 0.616915
NA Plut_1589 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1777743 1902 + 0.590431
NA Plut_0002 RecF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS1555 1110 + 0.512613
NA Plut_0598 DNA repair protein RadCRecName: Full=UPF0758 protein Plut_0598; chromosome CDS698283 672 - 0.581845
NA Plut_1602 DNA-directed DNA polymeraseSubName: Full=DNA-directed DNA polymerase; EC=2.7.7.7; chromosome CDS1794564 1167 + 0.604113
NA Plut_0001 DNA-directed DNA polymeraseRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS284 1137 + 0.501319
NA Plut_2047 Holliday junction resolvase YqgFRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS2277625 426 + 0.63615
NA Plut_0428 Deoxyribonuclease IV (phage T4-induced)RecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS504531 840 - 0.595238
NA Plut_1199 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1357774 834 - 0.63789
NA Plut_0115 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS129480 477 + 0.507338
NA Plut_0902 DEAD/DEAH box helicase-likeSubName: Full=DEAD/DEAH box helicase-like protein; chromosome CDS1025199 3021 + 0.57994
NA Plut_2037 Recombination protein O, RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2267317 795 + 0.633962
NA Plut_0481 TatD-related deoxyribonucleaseSubName: Full=Sec-independent protein translocase TatD; EC=3.1.21.-; chromosome CDS562756 771 - 0.622568
NA Plut_0011 Ribonuclease HRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS15317 627 - 0.61563
NA Plut_1262 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1422049 3567 - 0.593216
NA Plut_1820 RNA-directed DNA polymeraseSubName: Full=RNA-directed DNA polymerase; EC=2.7.7.49; chromosome CDS2031253 1488 + 0.558468
NA Plut_0098 DNA gyrase, subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS101707 2448 + 0.581699
NA Plut_0353 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS363615 1230 - 0.534959
NA Plut_1642 Crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1843002 576 - 0.618056
NA Plut_1607 ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS1799552 462 + 0.564935
NA Plut_1913 DnaB helicaseSubName: Full=DnaB helicase; chromosome CDS2126100 1536 + 0.584635
NA Plut_1819 transposase-likeSubName: Full=Transposase-like protein; chromosome CDS2030256 297 + 0.518519
NA Plut_0539 Excinuclease ABC, A subunitSubName: Full=Excinuclease ABC subunit A; chromosome CDS630807 2871 + 0.597353
NA Plut_0971 HhH-GPDSubName: Full=HhH-GPD; chromosome CDS1095243 858 + 0.618881
NA Plut_0010 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS13263 1935 - 0.55969
NA Plut_0869 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS991184 837 - 0.591398
NA Plut_0350 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS358918 2112 + 0.625947
NA Plut_0261 Single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS267470 492 - 0.619919
NA Plut_1322 DNA-directed DNA polymeraseSubName: Full=DNA-directed DNA polymerase; EC=2.7.7.7; chromosome CDS1497277 1191 - 0.576826
NA Plut_1912 Phage SPO1 DNA polymerase-related proteinSubName: Full=Phage SPO1 DNA polymerase-related protein; chromosome CDS2125504 600 + 0.601667
NA Plut_1299 Protein of unknown function DUF83SubName: Full=CRISPR-associated exonuclease, Cas4 family; chromosome CDS1471049 645 + 0.496124