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# Pseudomonas fluorescens PfO-1, PfO-1

>Pfl_0495 Nucleoside diphosphate pyrophosphatase
MTDFAKAIPTAVDIVRREQCYKGFYKLDRLHLRHELFAGGMSREINREVF
VRHDAVCMLPYDPQRDEVVLIEQFRVGALGKTDNPWLVELVAGLIDKDEQ
PEEVAHREAQEEAGLDIKALWPMTKYFPSPGGSNEFVHLYLGRCSTEGAG
GLHGLEEEAEDIRVTVWAFEDALQAVRDGRIANAASIIALQWLALNRAEV
RGLWS
>Pfl_0469 lipopolysaccharide core biosynthesis protein, putative
MAGWNLEPEYSDLAQHFGSLEAVFALQGERLTRDPLSEVIRVQLNGVNYY
VKRYVGAGKGLRRYLGKPRVKMEWQNLKRFAKWGIPTAEVVAWGLERNGM
AYDRGAMITRELPRTEDLSALAERNDPKLKDRAWVDGVSRQLAGYTRVMH
DHRFTHNDLKWRNLLIDDQAQLFLIDCPNGDFWRGFWLKYRITKDLACLD
KVAKYHLSNTQRLRFYLQYRQRDRLNAADKQRIRHVVRFFEGRE
>Pfl_4021 TatD-like deoxyribonuclease
MQLIDIGVNLTNPSFADKHQAVLDRAYAAGVCQLVLTGTSVEGSEQALEL
CQQLDPDGQRLFATAGIHPHSASDWNADSARRLRSLLQESNVVAVGECGL
DFNRDFSPRPQQEKVLEEHLALAAELQLPVFLHERDASQRLLEILRDFRD
QLPAAVVHCFTGEQKALFSYLDLDLHIGITGWICDERRGTHLHPLVKEIK
RGRLMLESDAPYLLPRTLRPKPKNGRNEPAYLTEVLREVALHRGETEADL
AAHTTACARAFYGLPILP
>Pfl_5283 DEAD/DEAH box helicase-like
MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTG
KTGGFALPILERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFK
IYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLCGQGSVD
LSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSATFSKDITD
LAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWE
QVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAI
SLVAPDEEKLLKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDMRN
PRNARGPRGDGPNGGGGGGGRKDKGKDKGKEKPAGERGERPARQQKPREG
TPAREQRQPSQPPRAAADRAPDEFLDDDIDNFGNRVDYVPKQAPTGGRNR
RPGAPAQGAGSGAPRGGQSQGRQNGPRNSNGSSTGTPPGKRSGPRNGAPR
DGQGRRDENSRNRRPARDDQQRAEPAVQNPRSSGPKIMHKESKADRFPTP
EQLDQLPSRPRGEKPALLTRNR
>Pfl_3500 Resolvase-like
MSSPTHRQESTMQGTTEVVAYYRVSTKGQGESGLGLEAQRSYVESAAKAN
GWIVIDEYTDTVSGTVPPVDRPACSRAIATGLPVVVAKLDRLSRDVEHIA
SLMKRVIFKVATMPQADNFQLHLFAALAEQERAFISQRTKDALKALQERA
DSGCEESRAKVDRRSNNLVVARKAKAEKAASVQPVIKINPHHIEIAPHVK
ACLFEGVNTLQGLADCLNAKGKHTSRGGLWSPTTVSRLMVALGVGFKK
>Pfl_0468 Lipopolysaccharide kinase
MKLMLAEPFKSLWAGRDPFAEVEGLQGEVYRELEARRTLRTEVDGNGFFV
KIHRGIGWGEIFKNLLTAKLPVLGAGQEWKAIQRLQEVGVPTMTAVAYGE
KGSNPADQHSFIVTEELAPTISLEDFSIDWVKQPPQPKLKRALIAEVARM
TGMMHRAGVNHRDCYICHFLLHTDKPVTPEDFKLSVIDLHRAQTRPAITQ
RWRNKDLAALYFSALDIGLTRRDKLRFLKGYFQQPLRRILAEEAPLLSWL
EGKANKLYARKQRYGDAL
>Pfl_0984 Histone-like DNA-binding protein
MALTKDQLIADIAEAIDAPKTTARNALDQLGQIVADQLENGGEITLPGIG
KLKVTERPARTGRNPSTGAAIEIPAKKVIKLVVAKGLTDAVNK
>Pfl_2926 Phage integrase
MSDIDRYLQAATRDNTRRSYRAAIEHFESAWGGFLPATADSVARYLVAHA
GVLSVNTLKLRLSALAQWHNSQGFADPTKSPVVRKVFKGIRALHPAQEKQ
AEPLQLRDLEQTVAWLEQEMKDAREQQDRPLLLRACRDRALILLGFWRGF
RSDELCRVQIEHVQAHAGNGITLYLPRSKGDRENLGQTYQAPALLKLCPV
QAYIEWITEAALVRGPVFRAVDRWGNLSEEGLHANSVIPLLRQALERAGI
SAERYTSHSLRRGFATWAHQSGWDLKSLMSYVGWKDMKSAMRYVEASPFH
GMARITDKPLSP
>Pfl_5051 Excinuclease ABC, A subunit
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQ
RRYVESLSAYARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGT
ITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDLVLAQPEGSKLML
LAPVIRERKGEHLSVFEELRAQGFVRARVNGRLCELDELPKLDKQKKHTI
EVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDEPGEEMIFSAR
FACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNGDLT
LAEGAIRGWDRRNVYYFQMLGSLAAHYGFSLEQPFNELPADQQKYILHGS
GSQNVDFKYLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFL
STQSCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACDYFGALKMTGR
RGEIADKILKEIRERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQI
GAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTVIVVEHDEDAI
RLADYVVDIGPGAGVHGGQIVAEGTPDEVMAHPDSLTGKYLSGRVKIEVP
AKRTPRNKKQVLSLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLIN
NTLFPLSATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNP
ATYTGLFTPIRELFAGVPESRSRGYGPGRFSFNVKGGRCEACQGDGLIKV
EMHFLPDIYVPCDVCKSKRYNRETLEIKYKGKNIHETLEMTIEEAREFFD
AVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGK
TLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIATGTPEEVAEMKQSHTGHYLKPLLIRDRA
>Pfl_0068 Integrase, catalytic region
MGISRQAYYKRNRACDARARHAQEVMGFVREKRLRQPRLGTRKLHNLMHT
EPEVSVKVGRDRLFDILRDRRELVPRRRAYHKTTDSHHRFRRHPNLLKDG
PIQVVAKAPEQVWVADITYLPTQTGVAYLSLITDAYSRKIVGHHVHESLH
TESVIQAFNKALKQRTTKQCLVHHSDRGVQYCSELYQRLHAKYGITCSMT
DGYDCYQNALAERVNGILKNELLLHRPKNFAEAIRMVDESVQIYNNERPH
LSLKYKTPDAVHRAF
>Pfl_3649 AP endonuclease, family 1
MKIVSFNINGLRARPHQLAALIEKHQPDVIGLQETKVHDDQFPLEEVRAL
GYHVYFHGQKGHYGVALLSRQEPIAVHKGFATDEEDAQRRFIWGTFADAN
GVPVTIMNGYFPQGESRDHPTKFPAKQRFYSDLQALLESQFHNEQPLVVM
GDVNISPEDCDIGIGPDNMKRWLKTGKCSFLPEEREWMARLKNWGLTDSF
RHLNPDVTDTFSWFDYRSRGFEDEPKRGLRIDVILASHGLLPRVKAAGVD
YELRGMEKPSDHAPIWLELS
>Pfl_4041 Competence protein ComEA helix-hairpin-helix region
MRTGYFYSLLFAFLASASIAAVAAPGVSSENIRAPLVLDAAASSQSEKVD
LNGADAATLQKELAGVGEAKAKAIVAYREANGPFASVDELLEVKGIGKAI
LDRNRDKLEVN
>Pfl_2881 NUDIX hydrolase
MTSRWTTAVLDTDQPGGWAVARSPEGFLFDDNGVLFPREWLKRQDLSILA
EHGIGHLDGEPVYLLELHSTSEVPGCNWKGLRAFMLDGDHTIYKVLGYAA
QIGTWAREHRFCGNCGQAMTQVPRERAMYCQPCDLRSYPRISPSMIVLVT
RGDEVLLARSPRFVTGVYSTLAGFAEPGESAEDCLIREVREEVQIEVKNI
QYMGSQCWPFPHSMMLGFHAEYAGGEIVCQEDEIEDAQWFNVHDLPPLPA
SKSIARYLIDVYVARRLGHAEPVLPG
>Pfl_5049 Single-strand binding protein
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVE
KTEWHRVSMFGKVAEIAGEYLRKGSQVYIEGKLQTREWEKDGIKRYTTEI
VVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAP
APQQAAPQPAPDFDSFDDDIPF
>Pfl_3694 Histone-like DNA-binding protein
MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTF
SVTDRPARIGRNPQTGKTLEIAAAKKPGFKAGKALKEAVN
>Pfl_2690 DEAD_2
MSYSIAVRALCEFTAKTGDLDLRFTPSPTALEGIAGHRTVASRRNDAYQS
EVALEGAFGPLKVKGRADGYDPKQNCLEEVKTYRGDLSKQPANHRSLHWA
QAKIYGWLMCCRLQLEQINLALVYFDIVTEKETCLVEAFSADALRQFFEQ
QCGLFLAWAEQEMAHREARNRAAQQLGFPHAAFRPGQRHLAESVFKAVST
GRCLMAQAPTGIGKTLGTLFPMLKAMAPQQLDKVYFLTAKTPGRKLALDA
AQVLFDHSETLPLRVLEMVARDKACEHPDKACHGESCPLAQGFYDRLPAA
REAASQLRLLDQAALREVAAQHAVCPYYLSQEMARWADVVVADYNYYFDF
SALLFGLAQFNQWNVAVLVDESHNLVERGRQMYSATLDQATLGSVRKTAP
EALKKSLQRVNREWNALHNDQLAPYQAYDKAPEKLLQALSSCTASIGDYL
NDHPQGLDSGLQNFYFEMLQFGRVAELFDAHYLFDISKRDLERKRPLSQL
CLRNVVPAAFIGPRLTAARSSVLFSATLSPRHYYADLLGTPADTVWIDVE
SPFSAEQLQVQIVSRISTRFTHRQASLEPIVELIARQFSERPGNYLAFFS
SFDYLQQVAQLLAERHPHITRWQQSRGMDEGARQAFLDQFTADSQGIGFA
VLGGAFGEGIDLPGARLIGAFIATLGLAQLNPVNEQMKRRMAAIFGAGYD
YTYLFPGVQKVVQAAGRVIRTQQDRGVVMLIDDRFAEGRIRQLLPRWWQI
DQAEAAVHSTGLTHTPVIENLL
>Pfl_4549 NUDIX hydrolase
MTSVSAVSPRIIRIAAALLLNSAGQTLLVRKRNTTAFMQPGGKIEAHELP
VHALARELEEELGLVIDPVQASFLGQFSAPAANEPGFVVQAEIFQLTIDA
KVSPAAEIEEVIWIDPATDGDVVLAPLTRDLILPFYRASLTAIA
>Pfl_3959 hypothetical protein
MQSHEARLSVSPVASLSESRASLKDEFKCSARNTGENDMEPRVTELETHL
KYIRRDMDEVRGDVKAIKHRLAYSAGATAMVLGLLGWIANSRFDQLVTLL
SR
>Pfl_3567 Nucleoside diphosphate pyrophosphatase
MSNTTERVNIVDTQVLSHDWYLLKKITFDYHRNNGDWQRQTREVYDRGNG
AAILLFNREQRTVVLTRQFRLPVFVNGHDGLLIEVAAGLLEGAAPEQRIR
DEAEEETGYRVHDVKKVFEAYMSPGSVTEKLHFFIAEYDASSKVSEGGGL
EEETEELEVLEWRFEDALAAFQRGEICDAKTIMLLQYAAMNNLFGG
>Pfl_0740 hypothetical protein
MAKLSINQISIENLGPFRERQNFDLSVMPGRPVILLKALNGSGKTTLLTA
LQIGLYGYKAINIARRTEYEQLIAGLQRTDATGPARIEMHLSVEVGHYIQ
ELTLRREWHPKEKGFGEQFRVFAGHMEDLALAEDWDEFINGILPVELVHL
FFFDGEKIEALANPERLPALLRRATEVFLGLGGIDALAGDLKAVERRANK
KVLPTDCAGNHSQTSEYELELKQLEQRIEMLSQRQAHARTNLDEAQRKLE
SFSIEAQRSGLDAYQQAAQLRVRLALCEQEYGRARALLVTALEDPILPLT
WLGPLWESYKAYWQKDHQSKHNDLIVEEFAKRDQRILERLALDAPHVISI
AAELFAADLKGLRVDKSHIPILLSGGDPTEIEAQFQQAKRRLRDAKEIVA
TAQRTMEKAQDAVHQIPAHEQLSTVFEAMQQHTRGVSAAELQLHELSREL
EEARNKQAHFELRYQAASARARAELKENAFHLKALEAADRAKVVLGLFRE
RLLASKAQWLSEMITTEFKQLLRKRNLISRVLVEAETYAVSIEDVNGYTL
PMERLSAGERQILAIAVLSALIRERKGRFPVIVDTPLARLDRSHREALVH
NFFAKISHQVMVLSTDEEVEGTVHMALEQHMSREYSLMFDDESRRSVVSI
NTQQFQLDTL
>Pfl_2886 Predicted transmembrane transcriptional regulator (anti-Sigma-factor)
MNAPSDEQLVAYLDDELDREQRSQLDNLIADDPLLSLRVQWLSRSSLPFK
AAYDELAQQAPLDRLQARLDAAPSPQKPVFSRRWFIGAAAAGVALAAVAA
DRLFLAWQAQQSHNWRELVGDYMALYVPQTLEHLPTDEASQLAQLRTVDA
RLGVSLSPAKLKLPGAQFKRAQLLEYGGVPIAQMTWLDAKYGPLALCVTR
TNSGSQPLAHERRHGMNVVYWTEREHAWMLIGHHPASELEDMAKMFKTRL
NV
>Pfl_1333 Zeta toxin
MQEDKRLGMTDEEQAIWDDAIRFARSNKKVIGKRLTDQTRYPPEKEPVSV
FMAGSPGAGKTEASLALLNLFSDTPILRIDPDDLRNEFEAYQGGNAWLFQ
GAVSILVGKLIDLALDRKQSFLLDGTLSNIEIARNNVRRCLDKGRFVQIL
YVYQDPRLAWSFVRAREEAEGRRIRPEHFVDQYFAARDVVNTLKLEFGKD
LHVDLLVKHIDNSGRLYKAGVDKIDYHIPEKHTRHDLMAMLGINDGATPC
FP
>Pfl_4924 Exonuclease
MERIAVIDFETTGISPSSSCRATEIAVVMLENGRIVERYQSLMNAGVRIP
AFIEQLTGISNAMLRTAPSAEKVMNEVNEFVGCTPLLAHNAAFDQKFWDF
ELGRIKRTRLQNFACSLLLARRLMPAAPNHKLGTLTTFAQLPHTGQAHRA
MADAEMAANLMVHLAGELRDKHGVSELSHELLCKLQRVPAAKVGDHLQRY
KVR
>Pfl_1915 Deoxyribonuclease I
MILRFAAVLLLFISLGAQAGAPRTFTEAKKVAWKLYAPQSTEFYCGCKYT
GNKVDLAACGYVPRKNAKRASRIEWEHIVPAWQFGHQRQCWQEGGRKNCA
RYDPSYQKAEADLHNLVPSIGEVNGDRSNFSYGWLPVEKGQYGSCLTQVD
FKAKKVMPRPSIRGMIARTYFYMSKQYGLRLSKQDRQLYEAWDKTYPVQD
WERQRNQSVACVMGRGNEFVGPVNLKSCG
>Pfl_2187 DNA polymerase 3, epsilon subunit
MATRSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRE
SDEGAIAVHGITNEFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFI
NNEFALMGQHDRADITQHCTILDTLMMARERHPGQRNSLDALCKRYGVDN
SGRELHGALLDSEILADVYLTMTGGQTSLSLAGNASDGNGTGEGADNSAT
EIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPALWTQLLEAEA
QA
>Pfl_0019 SMF protein
MMMPVSASVSPAELEARLRLHRLPEVGPKRFAKLLEAFGSASKAISAPAS
AWRSLGLPAACAEARRCPEVRDGASHALRWLERPDQHLLMWDHPDYPALL
AQIPDPPPLLFVAGDPRILEKPQLAVIGSRRASRPGMDTAAAFSRSLAGA
GFVITSGLALGIDAAAHQAAVDVGGQTVGVLGTGLENFYPQRNRRLADVM
IASGSAVVSEFPLDTGPTASNFPRRNRIISGLSLGVLVVEASVASGSLIT
ARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAVLVETIEHILEALRGW
QHLPVSTAAANPDNPLLRLLHAAPHTSEGLADSSGWALPKVLAALTELEM
DGRAVCENGRWFARVS
>Pfl_3066 Excinuclease ABC, C subunit
MTEAFDSGAFLSTVSGRPGVYRMFDSDARLLYVGKAKSLKKRLASYFRKT
GLAPKTAALVGRIAQVETTITSNETEALLLEQTLIKEWRPPYNILLRDDK
SYPYVFLSDGQFPRLSIHRGAKKAKGKYFGPYPSAGAIRESLSLLQKTFF
VRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPEVYAEDVRHSVMFLEG
RSHALTNELSTAMEEAAINLEFERAAELRDQIALLRRVQDQQSMEGGTGD
IDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVAEVMAAFLG
QYFISSPERDLPSELIVNVVHEDFPALIEAIQALRGRELSISHRVRGTRA
RWQQLAVTNAEQALGARLANRQHVAARFEALAEVLNLDEPPQRLECYDIS
HSSGEATVASCVVFGPEGAIKSDYRRYNIEGVTAGDDYAAMHQALTRRFS
KLKEGEGKLPDILLVDGGKGQLSMARDVLNELAVPDLILLGVAKGATRKA
GFETLYLNDAANEFTLRGDSPALHLIQQIRDEAHRFAITGHRARRGKTRR
TSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAESI
YANLHSE
>Pfl_2097 ATP dependent DNA ligase
MSRNLDDYNRMRDFSATSEPAAGHRRGKKPAGDHALQFCIQKHDASHLHY
DFRLELDGALKSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGH
YGAGDVIVWDRGVWIPLEDPEKAYAKGKLKFELQGEKLAGVWNLVRTHMP
GKKEQWFLIKHQDGAARPQSDYDVLVAEPDSVLSERTIVDKPRLSAKQVK
PLQGPAKAPRKSASGKLTGAHKAKIPAQLKPQLATLVESAPEGDWQYEIK
FDGYRIMARIDQDEVQLFTRNGHDWTHKLPKQAQALAALGLESAWLDGEM
VVADADGVPDFQALQNAFDSGRSENIVYYLFDLPYLNGVDLREVAVEERR
AALATVLKTHQDPLLRFSEAFDETPQALLNSACQMRMEGLIGKRLGSPYV
SRRSSDWIKLKCKHRQEFVIVGYTDPKGARSSFGALLLGLHDRDSGELRY
AGKVGTGFNETTLKSILAQLKPLRVKKPAVANPPTGFEAKGVHWLKPSLL
AEVAFAEMTQDGSVRHAVFHGLREDKPAKDITEERAKPMNTSKTESTAPS
QSGLADGKVRITHPDRVIDASSGTTKMQLAEYYASVAEWILPQLKDRPVA
LVRAPDGIAGDLFFQKNAEHLAIPGIRTLDKELTGQPVMLINNAEALIGA
VQMSTVELHTWNATTTDLDKPDRFVLDLDPDPALPWKSMIEATALTLTVL
DELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVTHMAKLLPER
FSAVSGPKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPLFREEV
GEIKGADQWNVHNVHERLAEVGDEPWADIKKTRQSITAEMRKRVGMKK
>Pfl_1010 NUDIX hydrolase
MLDELLHRVSNHTPRTLETDTRFPEAAVLVPITRSDEPELVLTLRASGLS
THGGEVAFPGGRRDPEDPDLVFTALREAEEEIGLPPGLVEVIGPLSPLIS
LHGIKVTPYVGVIPDFVEYQANDAEIAAVFSVPLEFFRKDPREHTHRIDY
QGRSWYVPSYRYGDYKIWGLTAIMIVELINLLYDAKISLHQPPKSFINT
>Pfl_3676 Serine/Threonine protein kinase
MHTLAQLRAGELSRITRLDLAEGLTEFPPEIFNLADTLEVLNLSGNALSS
LPDDLHRLTRLRVLFCSDNQFTQLPACLGQCQALTMIGFKANRITQVPGA
ALPPNLRWLILTDNAIETLPTELGERPLLQKLMLAGNRLNTLPPSLSQCH
RLELIRIAANQLTELPQWLLTLPSLTWLAYAGNPLETEADAAALDKAPLI
DWSALQLEQPLGEGASGVIYRAQWQPANQPATSVAVKLYKGEMTSDGSPL
HEMNACITAGLHPNLIRVEGRIDQHPDGQQGLVMQLIDPSYRNLAGLPSL
ASCSRDVYADDCRFSADVALRIARGIASVAGHLHRRGITHGDLYGHNILL
NDQGDCLLGDFGAASFHAMADTPETRALQRLEVRAFGILLGELLTRIDSG
LSDEQRQVLEALEQRCCQPDVLARPGFGEISQALQHA
>Pfl_4407 Holliday junction DNA helicase RuvB
MIEADRLIAATHSPREREEVQDRAIRPVSLAEYIGQPTVREQMELFIQAA
RGRSESLDHTLIFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLA
ALLTNLEPHDVLFIDEIHRLSPIVEEVLYPAMEDFQLDIMIGEGPAARSI
KLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYSTADLATIVSRSAN
ILGLPLDPEGSFEIARRARGTPRIANRLLRRVRDFAEVRAKGHITKSVAD
LALNLLDVDEHGFDHQDRRLLLTMIEKFDGGPVGIDSLAAAISEERHTIE
DVLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPTRMGEMPVVDEFLDA
VDD
>Pfl_3216 Exonuclease SbcD
MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLRQLKLAQPDVLLIAGDIF
DTVNPPVKAQERLYDFIVSAHEQQPLLTIVMIAGNHDSGSRIELPAPLMR
RLRTHALGRVLWLDDGQLDAERLLLPLPNASGEIAAWCLALPFLRPAEVT
GAHLGDNYLRGIGQVHEWLIEAANAKRQPGQALVAISHAHMAGGSVSEDS
ERSLIIGNAEALPASLFGPSISYVALGHLHKPQKVNGEERIRYSGSPIPL
SFSEIAYQHQILDIVLDGETLVSVEPKLIPRAVNLQRLGPAPLAEILLQL
ADLPNIDLLAETQRQPWLEVRVRLDEPQPDLRHQVESALQGKAVRLVRIA
AEYAGNRGADGAEDGSALIELDQLTPQELFSRAWLDNYGNEVDEQTLKDF
AELLQDVQMEGEQP
>Pfl_5186 Exonuclease
MSLFSWLRPASPVVPDDLQQRLTKLPAIGELRECSLREQRWVVLDLETTG
LNLSKDRVLSIGAVVIEDGAIDFSQQFERTLQCHELKLGPSVLIHGLAPS
AIAAGSEPTEALVELLEFIGDSPVLAFHASFDQHMLGRALKEHLGHKLQT
VFLDVAQIAPLVCPQAHIREAGLDEWIDWFKLEVFERHHASADALATAEL
ALILFSRARQQQIHSPLNLQQRLSQWKRRQQTHSF
>Pfl_3030 hypothetical protein
MAGTSQEQAHDRNFQALFGAARKVLEAVEIDESKSRRATDALRELQDSVE
KKLVRLEAGVKQSIESSAQSTANQAAELLSKRFTEADAAAQRAAELYNMA
AKKLNSRRWLYFLSAQATILTLVVVSLYLWVPSLDEIKARRGEVARLDEL
GSRVEWSKCNVGNGQTRDCIRTDESEHADFFEDRTKKGKTYRIPKGY
>Pfl_5644 UvrD/REP helicase
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQ
VENASPHSILSVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLL
RAHWQEAGLSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWFING
QKDEGLRPQHIQASGDLFLATMRGIYEAYEAACQRAGVIDFSELLLRALD
LWRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLGKGGDSLMVVGD
DDQSIYGWRGAKIENIHQYSSDFPDSVTIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARS
DIAILYRSNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLL
EGRGNDAALERVINVPARGIGEKTVEAIRDHARHSDVSMWEAMGQLVANK
GLTGRAAGALGAFIELIENLAAKCAEMPLHLMTQTVIEQSGLIAYHEAEK
GEKGQARVENLEELVSAARNFENTEEDEELTPLAAFLGHASLEAGDTQAD
EHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSN
SVSRPFGGNQSMGGSNLFSGSEIPETGLSLGQAVRHSIFGDGVILNFEGA
GAQARVQVNFAEGSKWLMLGYAKLEAI
>Pfl_0002 DNA-directed DNA polymerase
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLE
VELVGRVQLEEPAETGSITVPARKLMDICKSLPNDALIDIKVDEQKLVVK
AGRSRFTLSTLPANDFPTVEEGPGSLTTSLEQSKLRRLIERTSFAMAQQD
VRYYLNGMLLEVSTGVIRAVATDGHRLAMCSMQADIGQQDRHQVIVPRKG
ILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLP
KGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQ
EEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALV
QESDNDDSAYVVMPMRL
>Pfl_1346 ISPsy11, transposase OrfA
MNTGKRRSQRDYTRTFKLSVVDQVEKGELSYKEAQERYGIQGKSTVLNWL
RRHGRQDWSQGASIRSKRPRSMDEPDKPLTPEQRIKELEEKLAQANQKAQ
FFEAVVDVLKNDFGVSVVKKRSGKSSPKGRSKT
>Pfl_0971 DEAD/DEAH box helicase-like
MTVLKALKKMFGKSEAEQLAPVPTAPSHAAGHRNDASKADRQTPATPPKQ
EPKPAPAAAPATEPARSETPKPARPRREPKPKAPVIPWKLEDFVVEPQEG
KTRFHDFKLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGT
GKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADL
TKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHL
DMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVM
NLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAGADKYKLLFNLVNDNGW
ERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGK
IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVS
ISFAGEDDSYQLPSIEEKLGRKISCETPPTHLLRAVERKRPQ
>Pfl_1937 Integration host factor, alpha subunit
MGALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGF
GNFDLRDKRQRPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS
>Pfl_3876 DNA topoisomerase I
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPA
AKRGKAAAGEAPALSPKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVI
EELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEIT
KKAIQEAFSEPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARGLSA
GRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGSTVRFEVAREKG
EAFKPLNEAQATAALEKLKSSSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARDYIETEF
GKKYLPESPNVYSSKEGAQEAHEAIRPSDANTTPAKLAGMERDAERLYEL
IWRQFLACQMLPAQYLSTTVSVAAGDFELRAKGRILKFDGYTRVLPQITK
PGDDDVLPDMAQGDVMKLIKLDPSQHFTKPPARYSEASLVKEMEKRGIGR
PSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFT
AGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAENPEAGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAAD
DEGESESLVLRGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEE
GSYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTNPTCKNTRKLLKSG
DAAPPKMDPVKMPELKCEKVNDTYILRDGASGLFLAASQFPKNRETRAPL
VIEILPHKDEIDPKYHFLCEAPQKDPDGLPAVIRYSRKTKEQYVQTEVDG
KPTGWKAFFDGGKWTVEDKRPAKAKA
>Pfl_3060 hypothetical protein
MIRMLIVGYCYGIRSERRLCEEAHLNLAYCWFCRLSLEDKVPNHATFSKN
RHGRFRDSYLFRWLFNEVLRHCMDAGLVKGEGFAVDASIIKADASRQRGV
PGDEPVNWSDPALSTRAVREYLEALDEEALAETLPKRLSLTARWTAAPGG
PAFYAYSTNYLIDTEHGVIMDVEPTPAHRTAEVESTTSATPLTVPRRCLP
GWWRKNTSGHMCRCGTKLSARTTAFRVTISTGMKRPRNIAAQPATYYAAN
GEPSERAFARHQSQHHHLPLQADRLRDMSDESQVLPEHSDSQDRPQRP
>Pfl_2937 2OG-Fe(II) oxygenase
MQTTFDLFADTESEQPRRAEQIGEQSWVLRGFALPQIEQLLPALESIIAS
APLRHMMTPGGFSMSVATSSCGALGWITDRSGYRYSSEDPVSHRPWPAMP
EVFRELAQAAAKRAGFADFMPDSCLINRYVPGAKMSLHQDKDENAYEAPI
VSLSLGLPATFVFGGFARGDRSQKISLLHGDMVIWGGVDRLRYHGILPIK
PGRHPRLGEQRFNLTFRTAG
>Pfl_0747 Phage integrase
MPTNATRLSDRQLKAVKATGKDFVLSDGDGLQLRVRASGSMMWNFNYREP
LTRSRLNMALGPYPDLSLANARKKAAEARELLALGIDPKTQRDEVRQAKL
AETEHTFEKVATAWFELKKDSVTKAYAEDIWRSLTLHVFPSMKTTPLSQI
TAPMVIKILRPIEAKGSLETVKRLSQRLNEIMTYGVNSGLIFANPLNGIR
AVFKKPKKENMAALPPEELPELMMEIANASIKRTTRCLIEWQLHTMTRPA
EAATTRWADIDFDKRIWTIPPERMKKRRPHTIPLTDQALSLLETLKQLSG
NREYVFPSDRNPRTHANSQTANMALKRMGFQDRLVSHGLRSMASTILNEH
GWDPELIEVALAHVDKDEVRSAYNRTDYIERRRPMMAWWSEHIQKAATGS
LSASAINQTRDRNVVPIR
>Pfl_5519 ATP-dependent DNA helicase RepA
MSRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQY
IVAMTFTNKAAREMKERVGTLLRPGEGRGLTVCTFHNLGLNIIRKEHERL
GYKPGFSIFDETDVKSLMTDIMQKEYAGDDGVDEIKNMIGAWKNDLILPA
QALENARNPKEQTAAIVYTHYQRTLKAFNAVDFDDLILLPVKLFEEHADI
LEKWQNKVRYLLVDEYQDTNASQYLLVKMLIGKRNQFTVVGDDDQSIYAW
RGARPENLMLLKDDYPSLKVVMLEQNYRSTSRILRCANVLISNNPHEFEK
QLWSEMGHGDEIRVIRCRNEDAEAERVAMEILSLHLRTDRPYSDFAILYR
GNYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDN
AFLRVINVPRREIGSTTLEKLGNYATERKISMYAATDELGLGEHLDSRFT
DRLSRFKRFMDKVREQCAGEDPISALRSMVMDIDYENWLRTNSSSDKAAD
YRMSNVWFLIEALKNTLEKDEDGEMTVEDAIGKLVLRDMLERQQEEEEGA
EGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTIEEERRLAYVG
ITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTE
VKAVRGNSALADIRAMLKR
>Pfl_3364 DNA topoisomerase III
MRLYLCEKPSQAKDIAAVLGAKRRGDGCWLGTDVTVTWCIGHLLETAPPD
AYDAKYKRWVLADLPIIPDKWKMTVKPRTASQYKAVKRLLGEASELIIAT
DADREGEMIARELVEHCRYRGPIRRLWLSALDEASIRKALAALKPGAETF
SLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLV
VDRDRSIADFVPVAYWAIDVQLLHGDTPFNAQWRAPNDACDDQDRCLNQA
LAQQAAAAISSAASARVVKLRTERMREVAPLPFDLGTLQEVCSKKLGLGA
QETLDIAQALYETYKVITYPRSDCGYLPLSQHNEAPGILAALRQADPSLE
ALREHLEPQRRSRAWNDAKVSAHHGIIPTAAAKNLERLTGKHRAVYTLIR
ARYLAQFLPNHEYDRTQADFDCAGEALRAVGKQIIEPGWKRALPEALAPA
KGREAPAPQTLPTLTQGAECAVADVKLKDLWTQPPKPYTEGDLIKAMKNV
AKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLVKNGKALSATPA
AFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVTKQAAWMSKQV
TRCAGLSLTISGPPPAGKAAAPWKNKRKTTRRKTTGTSKRVAKPAAK
>Pfl_5501 Tyrosine recombinase XerC
MERQLDAYCEHLRSERQVSPHTLSAYRRDLDKVLGWCIKQNIGSWQALDI
QRLRSLIARLHAQGQSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAP
PKGERRLPKTLDTDRALQLLEGAVEDDFLARRDQAILELFYSSGLRLSEL
TGLNLDQLDLADGMVQVLGKGSKTRLLPVGKKAREALEQWLPLRALTNPS
DDAVFVSQQGRRLGPRAIQVRVKLAGERELGQNLHPHMLRHSFASHLLES
SQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHPRAKRMKGDDS
>Pfl_0470 Lipopolysaccharide kinase
MTDFLSAEDRALLERHGLGTFDALWSKQLDAVDEPNTDGGGWSSVFRLDL
EGHGYYLKRQCNYLTRTLHAPFGEPTFAREFRNISRYNKLGIPALQAAFF
GERKVNGEVRAILLTRALDGWDDLDSLLQRWSDLDAAQQSAILKSCGLLA
RHLHGMRQVHGCFYPKHIFLRAEGDGYQAQLIDLEKTRPLLFGMRDRVKD
LEPLLRRAPEWSEAQLRELLAAYLDQSTDSSLVDSWVTRLTARRSRKETR
>Pfl_4149 TatD-like deoxyribonuclease
MLVDSHCHLDRLDLAAHDGSLDAALDAARERGVGHFLCIGVSADNAADVK
ALAERYDDVDCSVGVHPLDVQPGAAPALDWLLHELNHPKVVAIGETGLDY
HYEPEAAELQQESFRLHLQAAQQTGKPVIIHTRGARADTLELLREAALPQ
AGVLHCFTEDWEMAKVALDMGYYISLSGIVTFRNADALRDVASKVPADRL
LVETDSPYLAPIPYRGKPNLPQYVREVAEFLAMLRGENYERFAEQTTENF
KRLFPLANVKA
>Pfl_5248 DEAD/DEAH box helicase-like
MARGCYTARHFVLQASPVTTIATAFNTLPLSAAMLANLDSLGYAQMTPIQ
AQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVICPT
RELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTP
GRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPARRQT
LLFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQIEQRFYEISPEERMS
AVTKVLHHFRPASTVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDR
DQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHRVG
RTGRAGEKGIAVSLVAPSEAHRAQAIEQLQKTPLNWDQVDNLKSQGGAPL
QPPMSTLCIAGGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQSYVA
VERTVVMQALQRLNNGKIKGRSLRVRVL
>Pfl_5312 Holliday junction resolvase YqgF
MALRLILGFDYGTKQIGVAVGQVITGQARELCTLKAQNGVPDWNQVEALI
KEWKPDAVVVGLPLNMDGTPSEMCARAEKFARRLNGRFNLPFYTHDERLT
TFEAKGERLVRGGQKGSYRDNPVDAIAAALLLQGWLDENTALFES
>Pfl_1175 RecA DNA recombination protein
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIAL
GIGGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKAGATCAFVDAEHALDP
EYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVP
KAEIEGEMGDMHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGV
MFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKV
ASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQG
KANSAKFLADNPEVAAKLEKQLRDKLLSPAVIADSKASAVKETEDDLADA
DI
>Pfl_0004 DNA topoisomerase II:ATP-binding region, ATPase-like
MSEENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSI
DEALAGHCDDISIIIHPDESITVKDNGRGIPVDVHKEEGVSAAEVIMTVL
HAGGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHG
VPQAPMAIVGDSETTGTQIHFKASSETFKNIHFSWDILAKRIRELSFLNS
GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDG
IGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ
EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAV
EQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALD
IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGK
ILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA
DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDD
DAMEEYMTQSALEDASLHLNEDAPGISGEALERLVNDFRMVMKTLKRLSR
LYPQELTEHFIYLPAVSLEMLGDHAKMQDWLAQYEVRLRTVEKSGLVYKA
SLREDRERGVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLST
LLDEGAYIQRGERKKAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQ
LWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV
SNLDF
>Pfl_0538 DnaB helicase
MNEISAPEQYDLQTAALKVPPHSIEAEQAVLGGLMLDNNAWERVLDQVSD
GDFYRHDHRLIFRAIAKLADQNLPIDVVTLAEQLDKEGQTSQVGGLGYLG
ELAKNTPSVANIKAYAQIVRQRATLRQLIGISTEIADSAFNPEGRTAEEI
LDEAERQIFAIAEARPKTGGPVGVNDLLTKAIDRIDTLFNTADSITGLST
GYTDLDEKTSGLQPADLIIVAGRPSMGKTTFAMNLVENAVLRSDKVVLVY
SLEMPGESLIMRMLSSLGRIDQTKVRSGQLEDDDWPRLTSAVNLLNDRKL
FIDDTAGISPSEMRARTRRLVREHGDIGLIMIDYLQLMQIPGSSGDNRTN
EISEISRSLKALAKEFNCPVVALSQLNRSLEQRPNKRPVNSDLRESGAIE
QDADVIMFVYRDEVYHPETEHKGIAEIIIGKQRNGPIGFIRLAFIGKYTR
FENLAPGSYNFDDDE
>Pfl_1443 lipoprotein, putative
MSSWFKRIAILLILTLALGACSRVGLAYRNLDVIIPWTLSDYLDMNGEQK
GWFNERLREHLSWHCTTQLPGYLDWLDRLQTMVENNQVTDTALQARTAEA
KQAIAETAREITPSAIELLQGLDDRQVAEMNDAFAKDLQKRQQEYLKPPL
SQQIAERGARMDKRLNDWLGPLSAEQEQRVMAWSTALGDQNTQWIANRAH
WQKQFSAAVAQRKSPEFPQRIETLLVNRERLWTADYQKAYANTEAQARSL
FVDLMADSTPQQRQRLLKKIEGVRKDFNDLKCLKAAQKS
>Pfl_4959 DNA polymerase III, delta subunit
MKLAPAQLGKHLQGALAPVYIISGDDPLLCQEAADAIRSAARQQGFDERQ
VFAADANFDWGTLLQAGASMSLFAEKRLLELRLPSGKPGDKGAAALIEYC
SRPAEDTVLLISLPKLDGSAQKTKWGKALVEGQQTQFVQIWPVDANQLPS
WIRQRLSQAGLSASQDAVELIAARVEGNLLAAAQEIEKLKLMAEGGQITV
ETVQAAVADSARFDVFGLTDAVLNGEPAHALRMLEGLRGEGVEPPVILWA
LARELRLLANISLQYSQGTPLDKCFSQAKPPVWDKRKPLMSKALQRYSAQ
RWAQLLLEAQRIDAQIKGQAAGSPWMSLSRLALLMAGQRLTLPAE
>Pfl_0690 Exodeoxyribonuclease V, alpha subunit
MNRTFADLLPTPLTAESLAQLTPLTRADDLLLLLTQWVERGWLRALDKAF
VAFLHELESDVDPLVLLAAALTSHQLGHGHVCLDLFETLKAPDFALSLPP
EGDAQPGVLLLPSQLLETLDGAHWCKVLAGSSLVALAADESASAQERPLV
LSGKRLYLRRYWAYERRIDSALRQRLAEQEATPPDLARRLNELFDPAQRA
DVIDWQKLACALATRGAFSIITGGPGTGKTTTVVRLLALLQAPAVEAHQP
LRIRLAAPTGKAAARLTESISQQVQSLKVADSVREKIPTEVTTVHRLLGS
RPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLG
DKDQLASVEAGAVLGDLCRDAEAGWYSAQTRQWLEQVSGESLQDSGLHEG
TDGSHPLAQQVVMLRHSRRFGEGSGIGQLARRVNQQLPVEARQLLEAKTH
GDVFSLPLHNEHDRELEHLVLDGHAKGPHGYRHYLSVLRDRRPASGTPLE
NPCWVDWARDVLRAFDTFQLLCAVRKGPWGVEGLNQRITEALLKARLIES
DQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPERDGPDAGKSVLRVAFP
RNDGRGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVL
TKELIYTGITRAKDWFTLIEPRSGVFEEAVQRKVKRLSGLMLELEEGAPH
KG
>Pfl_3573 conserved hypothetical protein
MAPTDQRHEQALKLFLDARPELREALDHLNPLLAQAKGETQAQYREERLH
EAFEAEAESQGLFAWELTLQLTAATPEEYQAQRLEVHREVAEMAGMDWLE
YCDLYGIEP
>Pfl_2765 Integrase, catalytic region
MKQRPRIYYTEIQKKLMWDHWQKGDSLQHIAQLFDRNHSSIQRILAETGG
IRPSVRRRSRLALTLAEREEISRAVVAGNSIRSMAALLGRAASTISREIR
RNGGQGCYRANQADQAAWDRAHRPKVCKLVENRTVAQIVADKLQLQWSPE
QIAGWLKRTYPDDASYQVSHETIYRTLFIQARGALKKELLEHLRRTRAMR
RSRHHTQKKENHGRITDAVSIRERPAAAKDRAVPGHWEGDLLCGSRNSQI
ATLVERHTRYVMLVKLDGKDSETVISALIENARNLPQELYKSLTWDRGKE
MADHKRFTVATDIKVYFCDPHRPWQRGSNENTNGLLRQYFLKGTDLAEHS
QATLNEVARQLNSRPRKTLDYETPAERFSQSVASTG
>Pfl_0746 Phage integrase
MARVGKRAGRNFGFGRQLSYAGPQALKDLFGDGHFATVKAHSDRWQAFVH
WCRSDEGPRVNDARQIDREILMRYAVHVRKQVDQGNVGVATAQNRLSSVN
RTMAALRGDQYVKIPSPSKALGLQRSSVRSEAPQGQDRAQVELIARALSD
RQQSRVSAIVLLARETGMRLREAILADLPRLRREARQLGKINIQDGTKGG
RSGASAPRWIAVTDQVRGALDRASEASPKGSRNLLTPDESYKDFLQTIVR
PARDILHEHGLKGFHELRAAYACERYEQLIGFPAPVNGGRVHQEDRALDQ
RARKQISYELGHNRIDVVSAYIGGRG
>Pfl_3480 Recombinase
MKQAISYVRFSSDRQRHGSSVERQEGMIADWLKRHPDYEMSDLKFSDLGK
SGYHGEHIKEAGGFGKLLKALEDGFIRAGDVVLVEAIDRTGRLEPMDMLT
LVINPILKAGVSIITLDDNTTYSKESVNTAQIFLLVAKIQAAHGYSAALS
TRVADSYKKRRKDAAKYGIVPRRITPVWLNPDGTVREDVAPWIKTAFELY
VSGVGKSTIAKRMRESGVERLAKASGPGVEGWLRNKAVIGKWETLEGTPD
HQIIDDIYPAIIEPSLFYKAQVHAEKMKTQRPIKTASHFLVGLVRCGECG
KNYIVQNLHGKPHSMRCRTRQSQNECTNSHCVPKPVLDAIYRYTSVTAAI
EAVQQQQMGVNDKEIVTREAELLAITKRVDGLVQALTQTGPIPEVIEALK
QSRIEREAAESALVILRSTVVPSAGTHWQEMGKVWKLEAADAQRLAAMLK
LVDYHITVAPTGEITASHSEVLYRYIGVDRALDKYKLLANGKLMLIPKGY
VDDFPYHEPFQEMQSENTWDEADYDNLRQQHQ
>Pfl_0471 conserved hypothetical protein
MQLSDLKNAGRTPSLPLTVSLADAAGAADLQLLSLLRVLPGQRYVGAGVW
RGRAVLAKLLVGSKAARHFQRELEGVKLLAAQGMTTPLLLADGLKDGEGG
WLLFEFLEGAESLGDAWSKVESLPVLADEQSAVLAEALGAIGQLHGKGLW
QEDLHLDNLLRHGGQLYLIDGAGICAENAGQPLSRQKVLENLGVFFAQLP
KSLEPFTEELLVYYLLSNSEHALPLEALQKQIDKVRAWRLRDYLIKVGRE
CTLFSVKRGAFALRSIRREEEAAMLPVLEQADALLDQGHLYKTGGAASVG
KVEVAGRALVIKRYNIKNFAHWLKRFWRPSRAWHSWREGNRLAFLGIATP
KPLAVLETRFFWLRSKAYLITEHLAGPDIIERFAPYVESGEAPEAELQAL
DQLFARLIAERISHGDFKGHNLFWQEDRWALIDLDSMCQHGSLGSFAPAY
ARDRARFMRNWPENSALYQVIDQRLPKDVAGAA
>Pfl_2672 UvrD/REP helicase
MAQHTPDLPPELRPLAEMPWFKRLAARFLGHGLTQLRAQHRASWLHGQAD
GFRSGHTAGVDYGYKEGKADGLEEGRQVLLIRDSRNTEHRPPGIDNHLFD
DWRLPLSAELKKRMKADVARLLPAHAQPSVAQWKMIFSDTPSTSVIAGAG
AGKSTTLVLRILLLTHYLGFELDSMTVVTFTRESRKDFINKLIELFALWG
RALSQKDARDLVRTFHSRILPMVRSLPGFERLQAFENLSHRAPGADEDVD
SNPFDLRINDAQRQQLNACYHRLYKEDPRFAQLIQPLSRHALQLKELERD
HPDVQKRVAVTELAARRDEELCDMIEDMWLRAGAWPIKGIEPSRQAFEIN
GASFHGHGYIPSLDAWVVLGFDPRENPQVCRPNAKLTVRAEWAVKRTLFQ
AFCRKPLIWLDSYESSKRLLATLVGDVSAGPGFDYKVKGELASSPLLDCF
VAAAGFIENLGLDVPDAVGRMSFAKDDPDRFFFEALSLFWRALEDHLLDQ
KPPVMTYNRMFALFSEHSPENFKLLSDELLRPMSHLMIDEFQDVSPQIVS
WIRASLSEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSSPSYFME
FNKEFPSPSTTRVMLSDNYRSHQHIIDAAEHIVRAAPAIPGKKAKASGEE
RPLQPVNVLERDDQALGQRLSEHYRNGDSILMLYRKSSDKLLIEQHIQHV
VNVDSSLPYESRRLKQLTYHSAKGLQADAVFLLGDCQHLTSSPYKNQVYR
MAGLGKAGDSEPYDSAQKDEILRLAYVGITRAVSHCYWYVEPQDTQAVNM
PRASDRVAKGKPFFVDHRPEKKTA
>Pfl_1940 DNA helicase-related protein
MDLSLRNNLLNFKMGKRALKLESPDPGALEDILASGQSLKLLTRPDLMDG
ADPRERALYEQREREDVRRRHAEDALKRREIFVALTSAEMDVRLTELYRS
ARTALQEGGSNTLFLAIGFLSWTREDRAGQKYKAPLVLVPVTLERKSARS
GFTMVLHDDEPRFNPTLIEMLRQDFELGLGSLEQELPRDDSGLDIAGIWN
KVGHAIKDIAGWELNEDVVLSMFSFAKYLMWKDLAENAEHLRQSPVVQHL
LDTPRDSFISDTPFPEAESLDRDYGPTDVFCPLPSDSSQLAAVMAAAKGK
DFVLIGPPGTGKSQTISNMIAQSIAQGRRVLFVSEKIAALDVVYRRLREI
GLGEFCLELHSSKARKTDVLAQLQSAWEAKGQVDAAAWEVEAQRLASLRD
SLNIYVERLHRRHRNGYTIYDAIGTVTSGVDEAVASLGWPSPETHDQKAM
LELRELGDRLEVNAQAVGYSQLVGNALSAVGQAEWSPHWQQQFVQAARDV
LPAVLEVQQAADRFVELSGLPVTHYTPTALEGLSILSQAFPAAAGHDWRF
ALRPDARSIAQRLSDGCAGIEQHRDINSRLSTFWPSRVVADAKQGIDLLQ
QRRATFAELGQAWPQSVCDVLGQAVTLLDQMDDLKQQLTASYSDAIEAVD
TELLLREWKDAEESFWPKSWFGKRRIAGLLAPMQTSTGEVDNGKDLATWI
EIRSVRRAIDELEPGHECVAVWQGAKSEATHLATAIKLQEAVRLQKNDSA
WIDDGLQLVEQGQLGDELKEELRRLRALTRLDAGLGELVDLSSATSALWS
GLTTDIDVLTAALRFQAERRDIEERGRLVDDHPHVEEGRCGSSLKADFEL
LKKRAAVERELEDLADLREIVPVWNDLKTKVDVARRAVAFQGEMATAVAR
LALNPEQVAAYKAPLQTLLGDGNALLEPEAVIAIAGVTLREKLELLRERS
AHLTAVGHFTEVGVIETAHLALSDIKKNCKTVVSSESRLKAWCAWRKVRD
EAYAVGLAPIVQAMETGAITSGKVRRVLEVNYARWWLNTTVDNEEVIRTF
VSVEHEQRIRDFRALDDKFTELTKDWLRARLCSDLPSQDSVSRSSEWGVL
RHEMGKKTKHIPLRELMSRAPDALTKLTPCLLMSPLSIAQYLPPASTPFD
LVIFDEASQIPVWDAIGAMARGKQVVMVGDPKQLPPTSFFNRAESTAEDE
DVEADLESILDECISANLPMRNLNWHYRSRHESLIAFSNQRYYQSKLVTF
PSPFTADKAVRLCPVPGVYDKGGARTNLIEAKCLVADLVARLQSPAFREN
RRTVGVVTFNGEQQKLIMDMLDEACRKDPSLDSYFAESELEPVFVKNLES
VQGDERDIIYFSTTYGKDAAGVLSMNFGPMNRPGGERRLNVAITRARQEL
VVFSTLRPEHIDLARTQAIGVRDLKHFLEFAERGPRALAEADFGSVGGFD
SPFEEAVAAALAKKGWQIQTQIGVSSFRVDLGVVHPDAPGRYLAGVECDG
ATYHRSATARDRDKLREFVLRGLGWEIVRIWSTDWWVDAVGTAEKVHQRL
NEILAESRAKQAVIDAAQEAERLKIDAAMAEVIEVVDQVAEVAAADGVAE
ANDPSGALPELKYAKAASITPVEDVRAFACPLERLVYKESDPHQAVGLVD
PDQFFEPSYKETLEQMITHVVEKEGPVLDTALARRIARAHGWVRTGSRIR
DRVDQIARERFRSYEEEQIGTFFWPTHIESDTSVVFRKPGDEDSTRGLSE
ICLPELRALVDEMVQRGHEGESLIYAVAKEAGVSKLTHTGRQRIEKAIRQ
TAE
>Pfl_4151 DNA polymerase III delta prime subunit
MAEAYPWQDSLWQQLAGRTQHAHAYLLHGPAGIGKRALAERLMASLLCQR
PTPEACGECKSCLLLKAGSHPDNYILEPEEADKAIKVDQVRDLVSFVVQT
AQLGGRKVVLIEPVESMNINAANALLKSLEEPSGDTVLLLVSHQPSRLLP
TIKSRCVQQACPLPSESVSLQWLAQALPECSEDERVELLTLAAGSPLAAV
TLQGQGVREQRAQVVEGVKKLLKQQQSPTQLAEEWKNIPMLRLFDWFCDW
SSLILRYQLTQDEAGLGLTDMRKVVQYLAQKSAQPKVLDIQDWILAQRQI
VLSKANLNAALLLEALLVQWASLPGQR
>Pfl_4935 ATP-dependent helicase HrpB
MISLPIDEVLPALREALATRHEAVLEAPPGAGKTTRVPLALLNEAWLNGQ
TILMLEPRRLAARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVV
TEGILTRRLQDDPALEGVGLLIFDEFHERSLDADLALALSLNGRELFRAE
QPLKILLMSATLEGERLAGLLDNAPILRSEGRMFPVTMRWGRPFQPGEYI
DQRVTQTVLEALHDETGSLLVFLPGQAEIRRVHQQLADAIGERSDVMLCP
LHGELDLNAQRAAIDPAPAGQRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISKASATQRAGRAGRLEPGVCYRLWSQDQHEQL
AAYGSAEILSADLAGLALQLGRWGVAPSDLIWLDVPPAAAYAQAQDLLQR
LGALDGESLNRHGQAMAELPAHPRIAHLLLRGQALGLSNMACDVAALLGE
RDILRGAGADLHSRLVLLSGEERAARGAQGGVQRARQLARQYHGYLRGKA
SEPVADPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLANGRAALFAEPD
SLMKEPWIVIADLGSRQGQREERIYLAADFDPALFDSVLAEQVHNVDQLD
WDEREGVLRAERQRKVGELILSREPLTGLDENARSQALVNLVRRKGLELL
PWTPELRQWQARVALLRQLDLDAKGDSQWPDVSDATLLKTLEDWLMPYLG
KVSRLSHFANLDLSSIVRNLLPWPLPQQLDEQAPHHLSVPSGSSIRLDYS
EQPPILAVRLQELFGLADTPRIAGGRQVVKLHLLSPARRPVQVTQDLANF
WRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPRGT
>Pfl_5724 Tn7-like transposition protein B
MSIQVNDVYEPVTEDAIISTLSRVLWVGHNEGVIAFIDISSSLAKKPFLV
GLDEFKRSVKSGDVKLTKIKVPQYILILDEELSTEQKQDRDKKWEMIAPI
VNHEVPGYVFFPGELEALVAARALALGVYTKKISRLLHRYWVNGQVRNSL
LKDYSKVGKTTRIFVEGKKPGRKATYQGELVTQYKMLESVDFKCIKAGYA
LFVDDEAASRRAAYDKMLSMFYKVKDLSKHPESLGKLLPTSEIPSYRQFM
HHGKRFFDETTTARGRMGEKKWQKDGRGLEGTVRDNLRGPCHQFEIDSTV
ADIYLVNSYSRHMLIGRPIIYVVIDSYSGMIVGLYVGLEGPSWNGARQAL
FNAFTPKQKFCAMNGVNISEDDWPCHHLPYEVFADRAEMLSEGAEGLASG
LGVDIGIAPPFRPDWKSMVESRFNILNSLSGIRWMPGGVAARNRERGERD
YRLDATMNMREFTKTIIKCVLHYNQFNRQPARLSKQMVDDQVEPTPIAIW
NWAIEKDFMRDNNKSEELVYLNLLPRDTGSVRKGGILFRGMHYVSEYLTH
NNWTAIARNQGSWPIECWHLHEAANHIWIQDSNKQFVRCDLRKSDRKYAD
YRSDEVYDMLEAYRQVPPSHARDELESRVALLDDFEGTFNTAALEKKQTP
APKSKAQATGNIREQRSEELARERASAPIPDGVLPAKSAAQEPTKTDHAH
HFAGARGAVIIDMLKRIRPGNKP
>Pfl_1476 conserved hypothetical protein
MNANARFTHMKDGTPDDWAIIAADFSAYARQLPGRIMAHLKLLEGDFGGF
PVDRLTHSLQTATRAFRDGRDEEYVVCALLHDIGDTLGSYNHPDIAAAIL
KPFVSAENLWMVEKHGIFQGYYFFHHLGMDRHLREQFSDHPQFLATAEFC
AKYDAAAFDPEYDTLPLSFFEPMMERLFAQPKNSIYKAAMEEHSPA
>Pfl_4513 Endonuclease III/Nth
MNAAKRLEIFRRLHEDNPEPKTELAYSSPFELLIAVILSAQSTDVGVNKA
TAKLFPVANTPAAIHALGVEGLSEYIKTIGLYNSKAKNVIETCRLLVELH
NGEVPQTREELEALPGVGRKTANVVLNTAFRQLTMAVDTHIFRVSNRTGI
APGKNVVEVEKKLMKFVPKEYLLDSHHWLILHGRYVCLARKPRCGSCRIE
DLCDYKHKTSDD
>Pfl_1875 Excinuclease ABC, B subunit
MSEFQLVTRFDPAGDQPEAIRLMVEGIEAGLSHQTLLGVTGSGKTFSIAN
VIAQVQRPTLVLAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAY
VPSSDTFIEKDASINDHIEQMRLSATKALLERKDAIIVTTVSCIYGLGSP
ETYLKMVLHVDRGDKLDQRALVRRLADLQYTRNDMDFARATFRVRGDVID
IYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRFTFYPKSHYVT
PRETLLDAIEGIKVELQERLEYLRNNNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMY
KGDRSRKETLVEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEA
EHAGRVIEQVVRPTGLVDPQVEVRPALTQVDDLLSEITKRVAVEERVLVT
TLTKRMAEDLTDYLADHGVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVG
INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAIL
YADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEENAKYEAELRSPSEITKRIRQLEEKMYQLARDLE
FEAAAQMRDEIAKLRERLLAV
>Pfl_1035 RecJ exonuclease
MRIDPRPLPATLPFLGELPPLLTRLYAARGVQSEAELDKSLARLIPFQQL
KGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVD
YLVPNRFEYGYGLTPEIVEVAMTREPQLLITVDNGISSVEGVAAAKRHGL
KVLITDHHLPGDELPQADALVNPNQPGCEFPSKALAGVGVIFYVLMALRA
RLRSLGWYENKPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIR
AGRARPGIKAILEVAKREASRITSTDLGFIVGPRLNAAGRLDDMSLGIEC
LLTHDAALAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPFGL
CLFDPEWHQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHI
RDALSVVAAQHPDLISKYGGHAMAAGLTLPQENFSLFAEAFDAEVRRQLR
EEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLFHGVFQLVE
QRVVGERHLKVVLKTECGSVKLDGIAFGIDRDIWPNPTIKWVELAYKLDL
NEFRGNETVQLMIAHIEPR
>Pfl_4736 DNA photolyase, FAD-binding
MIQTETDMQLIWLRSDLRQHDNTALAAAAERGPSVAVYLLSPQQWQEHDD
APCKIDFWLRNLHKLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKI
EAVHVNEEYGINESRRDAAVAKALQAEGITFHSYLDQLLFKPGSVLTRTG
TYFQVFSQFRKVCYEHLHRSMPSLKQAPGKQSALNIASDPVPEAIEGFPT
PGASLRALWPAGETEARRRLDTFADAQIDYYKSERDFPAKPGTSQLSAYL
AAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYP
RVSRHRAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWM
HNRLRMVVAMFLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTG
TDSAPYFRIFNPVSQSEKFDSEGLFIKHWLPELAGLNKKEIHNPASVGGL
FGVADYPAPIVNLSASRERALAAFKNLPSRSSQGESDE
>Pfl_1991 curli fiber protein CsgE, putative
MSRHVWCALILAAVASFASASEQDEMMGFIVDDTISHIGHDFYYSFSERL
RDTSRMDFNLVVRERPDARWGSLVTVEYQQRLVYRRFLPPNTVELKDEAY
EAADSVRLEVVRRKLEALLQDTTDLEKDEL
>Pfl_5539 DNA repair protein RadC
MSIRDWPAAERPRERLLEQGSASLSDAELLAIFLRTGVPGKSAVDLARHL
LNQFGSLRLLLEADQEAFSKQLGLGPAKFAQLQAAQEMSKRHLAERSRQK
TALENPQVVRDYLKVMLRHEPHEVFGCLFLDSKHQVLTFEALFRGSIDNT
AVHPREVVKRSLANNAAAVILCHNHPSGNSDPSQADRLLTKRLQKALELI
DVRVLDHFIVGDGEPLSMAECGWM
>Pfl_1636 DnaA family protein
MKPIQLPLGVRLRDDATFINYYPGANAAALGYVERLCEADAGWTESLIYL
WGKHGVGRTHLLQAACLRFEQMGEPAVYLPLAELMDRGIEILDNLEQYEL
VCLDDLQVIAGKADWEEAMFHLFNRLRDSGRRLLIAASTSPRELPIKLAD
LKSRLTLALIFQMRPLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR
SMSALFDLLEQLDQASLQAQRKLTIPFLKETLGW
>Pfl_0284 NUDIX hydrolase
MRQKPTVLAREIVATSRLFCVEELKLRFSNGVERTYERLVGKGAGYGAVM
IVAMLDAEHAVLVEEYCGGTDEYELSLPKGLIEPGEDVLAAAERELKEEA
GYGARQLEHLTELSLSPGYMSQKIQVVLATDLYEERLEGDEPEPMRVDKV
NLRELSTLAQNPNFSEGRALAALYLTRDLLTQRGFFQS
>Pfl_2496 conserved hypothetical protein
MERYSKVGMQELDQRLSKIVEAARKKPVSVYRYGAPWVWIVSQDDWQGAL
KEVSSYIPPGHSLVLLRPQIDDLLDAHRDLLHDLNAQPGMLIAPQTVMHI
LLLQLLYSVPSEQQLYEQLNYNLLFRWFVGLGLNQKVWSFNVLSRDIATL
LNEPRAVQLIQKIIGEVFCGALLQMPEFSLNFALLHTWLGKHTGASHVSN
>Pfl_4270 Arc-like DNA binding
MRPLKQAIYSSRTADKFVVRLPDGMRERIAEVARNHHRSMNSEIIARLEQ
SLIQEGALGEELSMRLDSPELSLHERELLQRFRQLSHRQQNALVSLIAHD
AEMAADAS
>Pfl_0069 ISPsy11, transposase OrfA
MNTGKRRSQRDYTRTFKLSVVDQVEKGELSYKEAQERYGIQGKSTVLNWL
RRHGRQDWSQGASIRSKRPRSMDEPDKPLTPEQRIKELEEKLAQANQKAQ
FFEAVVDVLKNDFGVSVVKKRSGKSSPKGRSKT
>Pfl_3150 conserved hypothetical protein
MRWVCILFPQLALDAVLRQRPDPEQPLALLSGPAQRRVLQAINPAARALG
LRPGQSMTAAQAMSKGFTTVDYDVAEVEHWQQFLAAWAYRFSAQVSVHYP
RTVVFEIESSLGLFGSWVQFEARLRTELTELGFRHRIVAAPNPVAARVLA
NAYDGLVVPDGEALRHHLGQLPVDRIGLEPSVATALSRMGLRNLHQVQNL
PRQALARRFEAPMLKHLDTLFGARPLALAFYLPPDRFDVRIELNFDVQSH
QALLFPLRRLTSDLAAFLCGRDSGVQRFDLHLEHAGLPDTLIKVGLLSAE
RDPAMLFELARGRLEQVQVEAPVRGFRLRAEDLPSFVPQFQELFDDRPQQ
TLPWEQLRERLRARLGDEAVQGLRFQADHRPECAWQNADDKQRCPALPCV
QRPGWLLGEPQSVPEGSARILMGPERIESGWWDGDDVRRDYYLIQNRAGQ
QGWAYRAVGEVGPLWLQGWFA
>Pfl_0988 DNA polymerase III chi subunit, HolC
MTKVDFYILPSADPSARLDFACKLTDKAWRMGHRIYLHCSDAAQRDDLDA
RLWAFKGETFVPHGPAESEPEGLIVLGVGEDCGQHTDLLVNLDLKVPVFA
SKFARVAEVVVEDPAIRTAARESFRFYREQGYPLQDHRLQRL
>Pfl_0614 Helix-turn-helix, Fis-type
MTMMTETLVSGTTPVSDNVNLKQHLNTPSEEGQTLRGSVEKALHNYFAHL
EGASVTDVYNLVLSEVEAPLLESVMNYVKGNQTKASELLGLNRGTLRKKL
KQYDLL
>Pfl_4409 Crossover junction endodeoxyribonuclease RuvC
MTLILGIDPGSRITGYGIVRDTGRGGCIYVASGCIRTGAGELHERLQIVY
RGVREIIQTYGPVTMGIEKVFMAKNADSALKLGQARGAAIVAGAEESLEI
AEYTATQVKQAVVGTGAANKEQVQMMVMHMLKLTSKPQIDASDALAIAIC
HAHTRSSLLPHGLGTARSRGGRLRL
>Pfl_4060 Integration host factor, beta subunit
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGS
FSLHYRAPRVGRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEEGEL
>Pfl_4408 DNA recombination protein, RuvA
MIGRLRGTLAEKQPPHLILDVNGLGYELEVPMTTLYRLPSVGEPLTLHTH
LVVREDAQLLYGFAGKRERDFFRELIRLNGVGPKLALALMSSLEVDELIR
CVQSQDTSALTKVPGVGKKTAERLLVELKNRFKAWETSPAMFALVPNQPD
GPAPVNTAENDAVSALISLGYKPQEASKAISAIKEKGLSSEDMIRRALKG
MI
>Pfl_0480 O-antigen polymerase
MQFSGFSSTSSRIFDFISLWILPVGYFLLLCALFFLPGRSLHHKLFYGLF
SIPTLIALCLRPRELKEMLREPVFIALLLFAGWALLSLCWGPQDEPIGGM
FKPPLHTLMLFAGCFLLVRYRSDILTPLLFAAALVALIATIAFLIPFMLH
FEPGARLIGGGAFDNPLLSSHLFGFFCAYWLSLSMTCKNRRLYWLSIPAM
LIMFMAVIGTGSRTPLVALTMAALWLSLICWNRRSLVLLGTLAIGGATVV
VLFSKMIIERGDSYRFEIWQQALEKIAEHPWIGHGYNAVLAIDPGVGYNF
QEPHSFALGVLYYVGILGMLPWLFFQAWGLLSSWRQRVQPLLIIASTWLV
FGIGAGLTEGGGIISRPKEHWFLLWIPLALIAALSINQRARRLLAMPVQK
LSATALQQLSSDAQVIEEDGLGPKVLRLSDGSFLKLFRHRRWYTSGSFNP
YSERFAVNSEQLRRMGIPTPQVLNLYRLDDGSSAVHYTPLPGHTLRQVLQ
GITAPAVRHALVERFGKFMASLHEQGVYFRSLHLGNVLVLEDGEFGLIDL
ADLRIYPSPLSLSLRQRNLRHMQRYTVDRRWLFEDHLEALLQGYAVTASK
SAVDNLHRQVLAGNTPARVH
>Pfl_3149 DNA polymerase III, alpha subunit
MNQGYAELHCLSNFSFQRGASSALELFQRAKKHGYQALAITDECTLAGIV
RAWQAAKSVELPLIIGSEIRIENGPKLVLLVENIEGYQALCGLITQARRR
TQKGQYQILREDFSEPLPGLLVLWVPEAVDEVEEGRWLKQTFGERLWLAV
QLHRGQNDQQRLAALLSLADELQIPAVASGDVHMHARGRRALQDTMTAIR
HHVPVAEAGLRLHPNGERHLRSLDVLRELYPQTLLDESLKLARRCTFDLG
ELRYQYPKELVPEEHSASSWLRHLTEQGIAWRWPKGAQPKVLKQIDDELE
LIAELGYESYFLTVHDVVRFAREQKILCQGRGSAANSAVCFALGITEIDP
DRTTLLFERFMSRERNEPPDIDVDFEHERREEVLQYVFRRYGRRRAALTA
VVSTYHASGAIRDVAKALGLPPDQINALADCCGHWSDETPPVERLREGGF
DPESPLLHRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAAMA
DRTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRHQDLSLAT
IPPEDRPTYDMISRADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIV
RPGPIQGGMVHPYLRRRNKEEEETYPSPELEVVLKRTLGVPLFQEQVMQI
AIVAADYSPGEADQLRRSMAAWKRHGGLEPHKERLAAGMKKNGYSPEFAA
QIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFACALINSWPM
GFYSPDQILQDARRHHLQIRPVDVRASDWDCSLEPIAGEQPAIRMGLRMI
KGFREEDARSIEKARARGAFADVADLGERAGLDSRAQALLADAGALRGLA
GHRHRARWEVAGVQKQLGLFAGLPSQEEPDVLLPTPSVSEDLFTDYATLG
TTLGPHPLTLLRNELRARRCRSSRDLLEVEHGRPVSVAGLVTGRQRPGTA
SGVTFVTLEDEFGNVNVVVWRDLAERQRQVLVGSQLLKVDGRWEREGEVR
HLIAGRLSDLTPLLNGIRVQSRDFH
>Pfl_3595 NUDIX hydrolase
MQWLPHITVATIVEDNGRFLMVEEHKAGRNVLNQPAGHLDPDETLIEAAV
RETLEETGWDVEPTAVVGIYLYTAPSNGVTYQRVCFSAKAVKHHPDYPLD
DGIVGAKWLNRDELLAQRDNWRSELIIRCIDDYLAGNRFGLELIRPSL
>Pfl_3734 DNA polymerase B region
MVDLQQGFVLTRHWRDTPAGTEVEFWLATDAGPRRVRLPHQPSVAFIPAA
QREQAERVLADEKNVELRPLALQDFEHRPVLGLYCQQHGQLMRLETALNR
HSVDVFEADVRPPERYLMERFITAPVWFSGTPDADGVLLDAHLKPAPDYR
PQLRLVSLDIETTEQGELYSIALEGCGERQVYMLGAPNGDASIVDFDLEY
CESRTLILKKLNDWFARHDPDAIIGWNLVQFDLRILHEHARRLGVPLKLG
RGGEEMQWREHGSRNHYFAAAAGRLIIDGIESLRSATWSFPSFSLENVAQ
TLLGEGKSIDNPYQRMDEINRMFAEDKPALAKYNLKDCELVTRIFAKTEL
LKFLLERASVTGLPADRSGGSVAAFTHLYMPLMHRQGFVAPNLGTNPPQA
SPGGFVMDSRPGLYESVLVLDYKSLYPSIIRTFLIDPVGLIEGLQHPDDS
DSVPGFRGARFSRTRHCLPSIVARVAEGRETAKREHNAPLSQALKIIMNA
FYGVLGSSGCRFFDTRLASSITLRGHEIMLRTRQLIEAQGHAVIYGDTDS
TFVWLRRPHGQEEAAQIGRALVQHVNDWWREHVREQYGLESALELQFETH
YKRFLMPTIRGAEEGSKKRYAGLVTRADGSEEMVYKGLETVRTDWSLLAR
QFQQELYERIFQRKPYQDYVREYVRKTLAGEFDERLVYRKRLRRTLDDYE
RNVPPHVRAARLADDYNAQHGRPRQYQNGGWISYVITLAGPEPLEVRRAA
IDYDHYITRQLQPVADAILPFVDDDFSTLIGGQLGLF
>Pfl_2776 hypothetical protein
MRGVEDRAHREVDRAREEGTAAVSQSKVASRRCDDLRRRLESAQSELSQA
EQRTAAQLARAETLEQQLIQIRQLSEIKRKPRVRKNRHQATLKTNRRCQL
AAIREPSKATAIGHKRTLGSDCYRPIGDTQSLTAKFSGSPERR
>Pfl_3987 DEAD/DEAH box helicase-like
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQA
QTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQ
MPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLQTV
NHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAER
HLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIM
FVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVT
PRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAES
THGDLLDRLTADIGCTPRALAAALLRKATNGQALNLAAIEKERPLVPNSA
PRGDRPERSGDRPDRGDRERRAPMPLGEGRARCRTALGARDGIAAKNLLG
AILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLKDTRVAGKQLK
LRRYRED
>Pfl_3139 Excinuclease ABC, A subunit
MTSRRNSSSAAGMVRVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSL
AFSTLYAEAQRRYFESVAPYARRLIDQVGVPDVDSIEGLPPAVALQQQRG
TPSTRSSVGSVTTLSSLIRMLYSRAGSYPPGQPMLYAEDFSPNTPQGACP
QCHGLGRVYEVTEALMVPDPNLTIRQRAVASWPLAWQGQNLRDILVTMGI
DVDIPWRKLPKKQRDWILFTEETPTVPVYAGLTPEETRVALKRNMEPSYQ
GTFTGARRYILHTFTHSQSALMKKRVSQFMIGSLCPLCDGKRLKREALSV
TFAGHDIGELSRMSLLQVAEVLRPVADASWLEHADETGETLTHSQTREAR
QQRVAHGASGHANAPDVRHTPNLSLEKRLAAQRIAEDLLERVSTLTDLGL
GYLALERSTPTLSSGELQRLRLATQLGSQLFGVIYVLDEPSAGLHPADGE
ALFEALQRLKADGNSVFVVEHDLDTMRRADWLIDVGPAAGEKGGQILYSG
PPPGLAAIEHSQTRAYLFAEQQRSTRAARKPSGWLKLDGVTRNNLNNLSA
EFPLGCFTSVTGVSGSGKSSLVSQALLELVGAQLGRSVSDAEPEELNLED
DTPSASTGQVSAGLESIKRLVQVDQKPIGRTPRSNLATYTGLFDNVRKLF
AATSEAKAAGYDAGQFSFNVAKGRCPTCEGEGFVSVELLFMPSVYAPCPT
CHGARYNPETLAILWQGLSIAQVLQLTVDEAVAVFAEQPAIRRSLEVLRD
IGLGYLRLGQPATELSGGEAQRIKLATELQRNQRGATLYVLDEPTTGLHP
RDVDRLLEQLENLVNAGHTVIVVEHEMRVVAQSDWVIDIGPGAGDQGGRI
VVAGTPQKVAASKKSRTAPFLARALSR
>Pfl_2031 ISPsy11, transposase OrfA
MNTGKRRSQRDYTRTFKLSVVDQVEKGELSYKEAQERYGIQGKSTVLNWL
RRHGRQDWSQGASIRSKRPRSMDEPDKPLTPEQRIKELEEKLAQANQKAQ
FFEAVVDVLKNDFGVSVVKKRSGKSSPKGRSKT
>Pfl_1225 Helicase c2
MISTELKTTIQGAYSRFLEAKSLKPRYGQRLMIAEVAKVLGDIDTDDEGR
RSGDPAIVAVEAGTGTGKTVAYSLAAIPTAKLAGKRLVIATATVALQEQI
VYKDLPDLMRNSGLNFSFALAKGRGRYMCLSKLDMLLQEGHAQTATAQLF
EEEGFKIEVDEASQKLFTSMIEKLAGNKWDGDRDSWPNALEDADWARLTT
DHSQCTNRHCPNFGQCAFYKAREGMGKVDVIVTNHDMVLADLALGGGAVL
PDPRDTIYVFDEGHHLPDKAIGHFAHYTRLRSTADWLETTAKNLTKLLAQ
HPLPGDLGKLIEQVPELAREIKTQQQFMFTACEQVADFKPGEDVEGRERP
RHRFIGGVIPEHMREMGIELKKGFARLNDLFTRLTDLLKESMDGEVNIGI
ASNQAEEWYPLFGSLLSRASGNWELWTAFTAEDPEDNPPMARWLTLAESG
SLFDIEVNASPILAAETLRRSLWNVAYGCLVTSATLTALGTFDRFRMRAG
LPKKAVTAVVPSPFHHADAGVLRVPDLKADPRDAAAHTAAIIRDLPELVE
GSRGSLVLFSSRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNKHKARVD
GGDSSVLFGLASFAEGVDLPGAYCEHVVIAKIPFSVPDDPVEAALSEWIE
ARGGNPFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGK
AILNALPPFRREIS
>Pfl_5340 conserved hypothetical protein
MASPKKPVQKLHNGVNQLRIIGGEWRSRKLSFPDAPGLRPTPDRVRETLF
NWLAPYVAGAKILDPFAGSGALFLEALSRGAAMGQALDASHVAVSSLKEH
LGTLRCTNGQVQTADALRYLETQTATAFDLVFLDPPFNQNLLPAVCTLLE
ERQWLADDSWIYTESETAPSTLGLPGNWRLHREQKSGRVYYALWQRMAVI
AG
>Pfl_0689 Exodeoxyribonuclease V, beta subunit
MSNQPPLALAFPLKGSQLIEASAGTGKTFTISALYLRLILGHGGEGSGFG
RELLPPQILVVTFTDAATKELRERIRTRLAEAARFFRDETSPPDALIDEL
RAQFDPQQWPGCANRLDIAAQWMDEAAVSTIHSWCQRMLREHAFDSGSLF
TQTLETDHSDLLGEVLRDYWRLFCYPMQGDALNWVRSHWGGPAALLPRVR
GLFGTEREGDSDKTPSELIEECLQERRAALMELKEPWRQWADELLAICHQ
GVANKTVDGRKMQARYFEPWFEKLKAWAEDETLEHLDIGTGFARLTPDGM
AEAWKGEPPSHPGLDAMPVLKSSLDNLPTPDAAVLQHAAKWVGARFEDEK
RRRAVMGFDDMLLRLDAALQSDGGERLATLIREQFPVALIDEFQDTDPVQ
YRIFESIYRIEEDNPETGLFLIGDPKQAIYAFRGADIYTYLRARQATTGR
LHTLGTNFRSSHGMVSAVNHVFERAESREQGRGAFLFREKNGDNPVPFQP
VEAQGRKEHLQVSGLDVPALNIWHLSTDKPLSGAVYRQQLAAACASEITT
LLNGGQTGRAGFAQEGKDWRGLRPADIAILVRDGKEAQAVRGELAARGVR
SVYLSDKDSVFSAQEAHDLLSWLKACAEPDVERSLKAALACITLNLPLAE
LERLNQDELVWETRVMQFRGYRELWRKQGVLPMLRRLLHDFQLPQMLIAR
SDGERVLTNLLHLSELLQQAASELDGEQALIRHLAEHLALSGQAGEEQIL
RLESDEQLVKVVTIHKSKGLEYPLVFLPFICSAKPVDGSRLPLHYHDESG
KARISLKPDAELIAVADNERLAEDLRLLYVALTRAQHACWLGVTDLKRGN
HSSSVLHLSALGYLLGGGATLNESSGLARWLDDLQQDCSALSVVEMPEAT
SEEYQPPRNEATLRATLLPSRRASENWWIASYSALRISDVLSVGNDEAPD
SPQAQKLFDDERLDPEAPREIIAGGADIHRFPRGPNPGTFLHGLLEWAGE
EGFAVTRESLDDAIARRCNRRGWEGWITTLGDWLQHLLKLPLPAGLDQPP
VVLEQLKQYRVEMEFWFASHKVDVLKLDEQVRQFTHNGVARVGAEAVQLN
GMFKGFIDLTFEHEGRYYVADYKSNWLGVDDAAYTERAMEQSILDNRYDL
QYVLYLLALHRQLKARLADYDYDRHIGGALYLFLRGTRAPGGGVYFARPP
RELIERLDLMFQGKPQPKAEPAWEQGELL
>Pfl_1782 Protein serine/threonine phosphatases
MALQLSFAEASATGPRAENQDALRLVTPAPALAASKGFLFAIADGVSQCA
DGGLAARSTLQALALDYYATPETWSVAQALDRLLLAQNRWLQANGGGQPL
LTTVSALVLRGRRFTLAHVGDCRVYRWHAETLQRISEDHVWDQPGMQHVL
KRALGLDQHLVLDFLDGELRDGECFVLLSDGVWAALGDTAIAGILRDQPD
LHSAAQTLVNAAHLAGSQDNASALLVRVDAVGEASLGDALIHLQQWPLPT
SLKPGQVFEGWRVQEVISRSQQSLLYRVLDGQGQAWLLKTLPAQLADDAQ
AGQALLAEEWFLKRVAGRHFPEVHSAGQRQHLYYVMREYSGTTLAQLFAQ
SGPLPLAQWQDLAERLLRAVGLLHRRQILHRDIKPENLHLGDDGELRLLD
FGLAYCPGLSQDAPSTLPGTPSFIAPEAFQGTAPSTHQDLYAVGVTLYFL
LTGHFPYGEIEAFQRPRFGVPVSAGRYRPDLPEWLAQCLERGVLADPLQR
YETAEEWLLALEQGERRSLNVRPRPLLEREPLKVWRTLALLALLGNLVLL
FLLFHG
>Pfl_5270 NAD-dependent DNA ligase
MLATLRLFLFFLPFFHLHTFADDCPDWAAARASSEVVALQQQIDRWDDAY
HREGRSVIADELYDQSRLRLNQWRQCFNLPSPPEPLRTASGPVAHPVAHT
GLDKLHDAADIATWLRDRQNVWVQPKVDGVAVTLIYRDGRLHQAISRGDG
VRGQDWTASAKKIGAIPQQLTQPQDLLVQGELYWRLNGHMQARAGSANAR
ATVAGLLGRKDLGAEHAAGIGLFVWDWPHGPRDLPERITALTQFGFPTTV
PYTQAVASLNDAQHWRDHWYHSPLPFATDGVVLRQSLRPPAERWQARPPY
WAVAWKYPFAQALADVRKVHFKIGRTGRITPVLELSPVMLDDRQIKRVSV
SSLRRWQELDIRPGDQVAISLAGLTIPRLDSVVLRSTERADLNVPLASDF
HALSCWQPTPGCESQFLARLTWLSGKQGLALPHVGRGTWEKLLETGRLNS
LLDWLTLDGPELANIAGLGERSSARLLHSFHSARQRPFAQWLKALGLPPT
GQATLADSWQALAQRNTEQWQAEAGIGPGRAAQLSAFFRDPQVLTLSETL
QAAGVDGF
>Pfl_1255 SNF2-like
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNA
PLTRVRFSPGDSITHFEGWKMTVQQVDDVDGLMVYHGLNAQNEAVTLPET
QLSNFIQFRLASDRLFAGQIDPLAWFSLRYHTLEHTSRQLQSALWGLGGV
RAQPIAHQLHIAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRA
NRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDATNPFEDTQLA
LVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDKVSPEYSLVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPV
AEAVQELLDKGRLSPAAHKTIHGFLGNEGEALLTAVNDGDTEASARLVRE
LLDRHGTGRVLFRNTRAAVQGFPERKLHPYPLPCPDEYLELPLGEHAELY
PEVSFQAQPDASEEERWWKFDPRVEWLIDQLKMLKRTKVLVICAHAETAM
DLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGS
EGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSP
QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGEWQALID
EARTERERLEAELHTGRDRLLELNSGGAGEGEALVEAILEQDDQFALPIY
METLFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRNQA
LSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLEL
LYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAFETLNDQLESV
PRASANKFIQAQRDQLTPRINAGEDKVTPRHAERVAEARRRLAADTDEEL
ARLTALQAVNPTVRDSELDALRKQREQGLAMLDKAALRLEAIRVLVAG
>Pfl_1347 Integrase, catalytic region
MGISRQAYYKRNRACDARARHAQEVMGFVREKRLRQPRLGTRKLHNLMHT
EPEVSVKVGRDRLFDILRDRRELVPRRRAYHKTTDSHHRFRRHPNLLKDG
PIQVVAKAPEQVWVADITYLPTQTGVAYLSLITDAYSRKIVGHHVHESLH
TESVIQAFNKALKQRTTKQCLVHHSDRGVQYCSELYQRLHAKYGITCSMT
DGYDCYQNALAERVNGILKNELLLHRPKNFAEAIRMVDESVQIYNNERPH
LSLKYKTPDAVHRAF
>Pfl_0400 Primosomal protein n
MRIPRVPDAILRLALPSPLRRLFDYRAPAGVLRSQLQPGMRLRVPFGRRE
MIGILVEVTDTSEVPVEKLKPALALLDVTAPLPPALFKLCLWTSQYYQHS
LGDTLSWALPVLLRQGELAEVRQERFWSAAPGASLDDPRIARAPRQREAL
ATLAQHPHGVAHQLLSKLMLSKDSLDLLLAKDLVQVEVRRHAPGARHEHW
LAQPELPLNSEQRAAYEAIRAGFDSYHAFLLAGVTGSGKTEVYLQLIRET
LEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRDRLDAWLA
ARDGEADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLA
LVRARQENIPIVLGSATPSLESLHNAYTGRYGLLRLNERAGGAKQPRFLR
LDVKSRPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGW
MSECQRCDARMTVHQRYGELRCHHCGYVERVPRQCPKCNKVDLRPVGAGT
ERAEERLAILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGQPCILVGTQM
LAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEP
GKVIIQTHLADHPLLVQLTEQGYFAFAEQALSERRAAGLPPFAHLALLRA
EAHKPGQAEGFLDEACSEAERLLAEQNLSGIELLGPVPAPMERRAGRFRA
QLLLQATARAPLHRLLASWLLVLEQMPSGRAVRWSLDVDPVDLY
>Pfl_4975 Methylpurine-DNA glycosylase
MSNLTVRATSTRQPVGLADAFFDRDAQTLARDLLGKVIRHRVGDLWLSAR
IIETEAYYCEEKGSHASLGYTEKRKALFLDGGHIYMYYARGGDSLNFSAQ
GPGNAVLIKSAYPWVDEISGPASLAQMLLNNPDAQGRPRPSQKLCAGQTL
LCKALGLKVPVWDAKRFDHEILLVEDTGPAPTHVIQTTRLGIPHGRDEHL
MYRFVDAAYAQWCTRNPLRRGQVEGRDYFLL
>Pfl_0503 Gram negative topoisomerase IV, subunit A
MSDNLADSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQR
RIVYAMSELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPF
SYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSELGQGTADW
GPNFDGTLQEPLVLPARLPNILLNGTTGIAVGMATDVPPHNLREVATACV
RLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMRA
VYHVEDGDIIVTALPHQVSGAKVLEQIAALMQAKPSKAPQIADLRDESDH
ENPCRIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDGKPQLK
NLRALLVEWLEFRVLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIH
IIRTEEHPKAKLIERFALSEIQADYILDTRLRQLARLEEMKLRDEQDELL
KEQAKLQALLSSEAKLKKLVRSELLKDAETYGDDRRSPIVERAEAKALTE
HDLLPNEKVTVVLSEKGWIRSAKGHEIDATGLSYKAGDGFKTSAAGRSNQ
SAVVIDSTGRSYSLATHTLPSARGQGEPLTGRLTPPPGATFECVLMPEED
SLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADREH
NWLASVTTEGRLLIFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIA
VLPEGATLVLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALLV
ENLN
>Pfl_1349 Uracil-DNA glycosylase
MTADDRIKLEPSWKEALRAEFDQPYMTELRTFLQQERAAGKEIYPPGPMI
FNALNSTPLDKVKVVILGQDPYHGPGQAHGLCFSVQPGVPAPPSLVNIYK
ELKRDLNIDIPNHGYLQSWADQGVLMLNTTMTVERANANAHKDKGWQFFT
DRIIEVVSQKQPHLVFMLWGAHAQSKQKLIDATKHLVLTSVHPSPLSAYR
GFLGCGHFSRTNKFLEQNGEAPIEWRLPPVV
>Pfl_0743 hypothetical protein
MSSAESVNVGFDAIRVCEAIAKIGYEPYTAIMDIIDNSVTAEASTISISV
ELRPGKTLKNRNSVSSYKIMDDGKGMSHDEIVNAFTLGSKRNYGKNSLSK
YGMGLKSAGLSLGSKITITSKKDGVISDKYTFDLEEIEKENKLALIRQPL
TEAEKLDFSSDVNGSTGTIVEIAGCENVNQSSPGTTLSKLRERLGVVYYT
FLKDEENPLSIRIRTALSDKKGEYEEIKAKDLLFTEMASKNTGWSLDSYD
FFSPYLILDEDWDSLRDKDNNPLPAIKIQAVAFPQARMADEKSPLPIDKK
LIVKSYGVSRENSGFFIYRNGRLIRWGDGLERATGKPLITKDDINIRIRF
EIQDVHDDVLHVDVSKQRLEIDDEQIYNLETIISKAIRIAKEIRTACHEK
INLKKGEGETFSQSVRDVPEDDPQQMGKGEVEPETLSRQEKKNEEAQLAL
DKIAAEKKENGDILDLEADFQKIRYSNKIPFGQVWKPYFDSKEGVFVCIN
KNHPFYDVYLNRFEDGSKERLTAEALIFASALAESNVFSYETTVTQSDLE
RIFRRFHSNIHQFLQDWTWENTSED
>Pfl_3584 AAA ATPase, central region
MMDLFRSAPIAQPLAARLRATNLDEYVGQEHVLARGKPLREALEQGALHS
MIFWGPPGVGKTTLARLLAEVSDAHFETVSAVLAGVKEIRQAVEIAKQQA
GQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPSFELNN
ALLSRARVYVLKSLDEAALRKLVHRALTEERGLGKRHLTLSDEGFQMLLS
AADGDGRRLLNLLENASDLAEDNSEMGTELLQSLLGDTRRRFDKGGEAFY
DQISALHKSVRGSNPDGALYWFARMIDGGCDPLYLARRVVRMASEDIGNA
DPRALSLCLAAWEVQERLGSPEGELAVAQAITYLACAPKSNAVYMGFKTA
LRAAAEHGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYF
PEELDPIPFYQPVPRGLELKIGEKLNHLAQLDRLSPRQRRK
>Pfl_3001 DNA topoisomerase III
MRLFLCEKPSQGRDIAKVLGATRRGDGCLIGTDSTVTWCIGHLLETAPPE
AYGAQYKSWSLDHLPIIPAQWQVEVKSKTAAQFKIIKRLLSEASSVVIAT
DADREGEMIARELLELCRYRGPVLRLWLSALNEASIRKALSSLKSGQVTF
PLYHSALARSRADWLIGMNLSRLFTLLGRRAGYDGVLSVGRVQTPTLRLV
VDRDRAIASFVPVPYWTVDVHLSSMGQRFIASWLPPRSGRDEAGRCLQQA
LAHHAVQTITGEKSATVLSLQTEQLREPPPLPFDLSTLQEVCSRKLGLGV
QETLNIAQALYETHKATTYPRSDCRYLPESMFNEAPAVLDALLKTDPALR
PAFGSLDRSLRARVWNNAKVTAHHGIIPTTEPANLVRMSEQERQVYELIR
SHYLAQFLPHHEFDRTQVELECSKERLTAVGKQILIQGWKGLLTENTEDD
EPSQKHQVLPVLQQGTQCAVNDVELKSMRTVAPKPLTEGDLIKAMKNVAK
LVNDPRLKQKLRDTTGIGTEATRAGIIKGLVDRGYLLKKKRALMASAAAH
TLIEAAPTAVADPGMTAIWEQALDEIEAGRLTLDAFVAKQANWIAQLVAH
YRSHTLAIAVETSPSCPMCNASMLRRKGKSGPFWSCSCYPDCKGTVSISK
DTRRS
>Pfl_1025 Tyrosine recombinase XerD
MPAIDHPLIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQDKGLELIN
AGRELILDHLAWRLEQNYKPRSTARFLSGVRGFYRYLLREKLISVDPTLR
VDMPQLGRPLPKSLSEADVEALLKAPDLSEAIGQRDRAMLEVLYACGLRV
TELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAIVWVERYLRDGRGE
LLGGRPSDVLFPSQRGEQMTRQTFWHRIKHQAKVAGISKSLSPHTLRHAF
ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPRG
>Pfl_4626 hypothetical protein
MEKNVVLYIDEEQIALDSYGRELRKNLPPELEIICTLPEPTLPLMLKFIC
SMRPRIASIVVDEHLEVAGTADYIGSQLADAYRQLDSKIPIYILSNHPDE
IDDNLESVEYILSKDDFADGGPALESAITRMVRHINAYEQIVDEREQRFV
LLLKKYVLSEISTEEAKELNELKFWREAPAAIEESTMTLELKRKLDEQED
ILNNIEQILSGKK
>Pfl_1808 RecR protein
MSFSPLIRQLIDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQA
MEGVGHCRQCRTLTEDDLCPQCADTRRDDTLLCVVEGPMDVYAVEQTGFR
GRYFVLKGHLSPLDGLGPEAIGIPQLMARIEEAGTFTEVILATNPTVEGE
ATAHYIAQLLQNKGLIASRIAHGVPLGGELELVDGGTLAHSFAGRKPISL
>Pfl_1437 DEAD/DEAH box helicase-like
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGK
TAAFVLPILNRLIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFI
KSGLITGGEDFKVQAAMLRKVPDILIGTPGRMIEQLNAGNLDLKEVEVLV
LDEADRMLDMGFAEDVQRLVDECPNRQQTMLFSATTGGSGLREMIAKVLN
NPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWLLANETYQKAIVFT
NTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHG
DWNLMSSIERYLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKTDA
KGDKKKTAAKTPTKRKSANRPKPDALVSSDGMAPLKRRKPAAPAAE
>Pfl_4078 DNA gyrase, subunit A
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLF
AMSELGNDFNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY
LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYD
GTELIPAVMPTRVPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN
PELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIIED
IDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD
GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKD
LLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA
SPTPSEAKEALVSTPWESTAVVAMVERAGADSCRPENLDPQYGLRDGKYF
LSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRILNSAVRLM
EVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTISHGGYA
KTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV
YWLKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYTEGHYIFMA
TANGTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSD
GGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLISMLIPEEGSQILTASE
RGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLIS
DQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQEPSEVEGEE
LEGEEGVELEDGVIGAEPDDAVDNLQADAADEEESQD
>Pfl_3405 conserved hypothetical protein
MSARLFLTFGFALLAGCSFFGPKVDLDSLTLDVAPKANDDTPIAVDFIAV
NDPDLLKQLSGISARQWFAEREQYQRDYRQLMSVWGLELVPGQFIDRQPF
PLGGKRAAGLLVFASYNTPGAHRLRLDDQSDAWLKFDSREMSLVSKEN
>Pfl_3005 DNA repair protein RadC
MSTQLTLIETSDFEADRIVQENQLIDEALHILDRRLFARGPILTSPDTVA
SYLKLHLAQQEHEVFGVIFLDARHRVLAFEVLFHGSIDGASVYPRQVVKR
SLAHNAAATIFVHNHPSGCTEPSQADRVLTARLKEALALIEVRVLDHFIV
GEGRPLSLAEHGWL
>Pfl_1116 DNA polymerase III, alpha subunit
MPASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLV
KFYKNTMGAGIKPICGADLWLSNKDPDGPLSRISLLVMNAQGYRNLTELI
SRGFIDGQRNGMVIIEREWVAEANEGLIMLSAAKEGEIGMAMIGGNPAEA
EALAREWMAVFPDRFYLEVQRTNRPNDEEQLHGAVALADKLGAPLVATND
VRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQYLKSAEEMAELFS
DLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFI
QWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVS
MPDFDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARA
QGKSFGLADRLSKMIPFEVGMTLEKAYEQEEILRDFIKVDEEAAEIWEMA
RKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLVTQFDKDDVEA
AGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDKPTYQ
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMV
DDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMA
GYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLV
EKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVV
TLIEEVRTMKLRLDAPDVNTSEFKFTVNDEGRIVYGLGAIKGVGEGPVEA
ITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEQ
KAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEEDAD
VYAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIID
LKPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFH
SAQSLLQTDAMVVVEGEVSNDDFSGGLRLRVKRVMSMEDARTNLAESLRL
KLQTQDLKGDQLRWLGDLLKRHRGACPITMEYTSPDAKTLLQFGETWRID
PADALIQALRDQFGRDNVFLQYR
>Pfl_2130 ISPsy11, transposase OrfA
MNTGKRRSQRDYTRTFKLSVVDQVEKGELSYKEAQERYGIQGKSTVLNWL
RRHGRQDWSQGASIRSKRPRSMDEPDKPLTPEQRIKELEEKLAQANQKAQ
FFEAVVDVLKNDFGVSVVKKRSGKSSPKGRSKT
>Pfl_1420 ATP-dependent helicase HrpA
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVARMQ
ASCDQVLARKASLPVIRYDDSLPIAAKRDEIKKALEKHQVLIIAGETGSG
KTTQLPKICLEIGRGQHGLIGHTQPRRIAARSVASRVAEELGTPLGALVG
YQVRFEDQSDSNTLIKLMTDGILLAETQNDRYLERYDTIIVDEAHERSLN
IDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVSGRTFP
VETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRR
VVLATNVAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASA
NQRKGRCGRVEPGICVRLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHL
RLGEITDFPFIEPPDGKAISDGFNLLQELSAVDRNSQLTPLGRQLARLPV
DPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQQAADQAHAQW
KDADSDFAALVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDLQLSLNKEPADYPKLHKAVMVGLLSQIGQKTEDGDYLGARQ
RRFWIHPSSGIGKKRPQWVMTAELVETTKLYARMVAKIDADWIEPLAGHL
IKKNHFEPHWEKKRGQVVAFEQITLFGLIVVGRRPVHYGPVDPVVSRELF
IREGLVRGEIQSRAKCLTANKQLLEQLDELEAKARRRDILADEETLYAFY
DARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLAREASEVTAQHYP
DTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGLI
EAKCIALVRNLPKALRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLR
MTGARVSDEAWAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFA
EASQAALAVPQSAKSQQPVEAKVFAPVAEKTQQKIAGLSMTVYPALVEEG
GTVKEGRFSTPAEAEFQHRRALQRLLMQQLAEPAKFLRGKLPGLTEMGLL
YRELGRVDALVEDILLASLDSCILDGEDPLPRDGAGLAALAERKRGSWTE
HAERVARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMLWFKELPRYLKAVEQRFEKLGAQVQKDRVWSGELAGLWTQYQTR
AAKHAQEGKRDPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQ
VEA
>Pfl_0996 Recombination protein O, RecO
MSQSPPPAQPAYVLHSRAYRETSALVDFLTPQGRLRAVLRSARGKAGTLA
RPFVPLEVEFRGKGELKNVGRMESVGNATWMVGEALFSGLYLNELLIRLL
PAEDPHPAVFDHYAATLLALAEGRPLEPLLRSFEWRLLDDLGYGFSLNTD
INDEPVAVDGLYRLQVDAGLERVYLLQPGLFNGTELLAMAEADWSAPGAL
SAAKRLMRQALAVHLGGRPLVSRELFRKP
>Pfl_2938 Transcriptional Regulator, AraC family
MKTLSTSLSTEDDPRWAAVVARDPRADGQFVYAVKTTGIYCRPSSLARLP
KPQNVEFFDTAEDAEAAGYRPSKRASKDQTEVAAQHAATVAAACRQIEAS
DSLPALNDLAETAGLSAFHFHRVFKAATGLTPKGYAAAHRSRRVRQRLAD
GSSVTEALYDAGFNSNSRFYEAADQVLGMKPGDFRSAGQNNDIRFAVGQC
SLGAILVAQSERGICAILLGDDPHQLVCDLQDQFRRANLIGADTEFEQLI
ARVVGFIEAPAIGLDLPLDVRGTAFQERVWQALREIPVGSTASYADIALR
IGSPKAVRAVAQACGANSLAVAIPCHRVVRSDGNLSGYRWGVERKRELLE
REGKPRQ
>Pfl_4231 conserved hypothetical protein
MRDYKWLHEYCLNRFGSAAELEAHLPVPKTPAQLRKISDDRYLSTMALRV
FRAGLKHSLVDAKWPAFEEVFFKFDPEKVVLMSAEHLERLMQDARIIRHL
GKLKSVPRNAQFILDVEKEKGSFGTLLADWPVTDIVGLWTYLKKHGHQLG
GLSAPRFLRMVGKDTFVPSYDVVAALNAQKIVDKVPTSLRDLATVQNAFN
QWHEESGGRPMSQISMMLAYTVNH
>Pfl_4592 Exonuclease VII, large subunit
MIKDPFARLGLDREVLTVSQLNGRARVLLEDVFSNIWVEGEISNLARPAS
GHVYFTLKDSGAQVRCALFRQNAARVRQALKDGLAVKVRGKVSLFEGRGD
YQLILDTVEPAGDGALRLAFDALKEKLSAEGLFSAERKVPLPAHPQRIGI
ISSPTGAVIRDIISVFRRRAPQVQLTLIPTAVQGREATAQIVRALKLADA
RGFDALILARGGGSLEDLWCFNEEAVARAVDACVTPIVSAVGHETDVSIS
DFVADVRAPTPSAAAELLAPDSSHLIRQVESLHRRLVMRMRDRLMRDRLR
LEGMTRRLRHPGERLRQQAQRLDDLDMRMRRAFERQLNTRRERLIRLETR
LAGQHPGRQLALLRQRLDSLAERLPRAMNEGLKRRRLQLQSQMQTLHVVS
PLATLGRGYSILLDERGNAIRNAAQTHTGQRLKARLGEGELQVRVEDNHL
TPVTLSLLD
>Pfl_3816 Transposase IS116/IS110/IS902
MDTLNLLGLDIGKSTFHLVGHDVKGKEVLRKKFNRNRLLEFAARLKPCTI
AMESCGGSHWLARKLLSFGHQVKLIAPQHVKPYVTGNKNDYIDAEAICEA
ASRPKTRYVAIKTVEQQVLSTQHRLREALVGHRTQTINRIHGFLLEFGIE
LPATKAAMNQVHQILDDPAAELPQQLKSFIEHLLEEMKRLNDEIKAIDRS
IKEQVDTDDAGTRLMSIPGIGPIIASALLADVGDASNFHSSRDFAASLGL
VPRQYSTGDQTVLLNISKRGDKYLRKLMIQGSRAVLVHIDKRTDALGTWC
RDLLIRKHPNKVACALANKLARIVWAVLARGGSYNAQSMA
>Pfl_5545 Exodeoxyribonuclease III xth
MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRASAFELDDPAFQL
DGYFLYACDAEVPAQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFD
KVSIATLLLPSGMNGDEDLNQKFKLMDDFGKYLDKQRRKRREYIYCGSLY
VAQQKLDIKNWRDSQQSPGFLAPERAWMDEIVGNMGYVDALREVSREGDQ
YSWWPDNEQAEMLNLGWRFDYQILTPGLRRFVRSARLPRQPRFSQHAPLI
VDYDWTLTI
>Pfl_1199 Methylated-DNA-(protein)-cysteineS-methyltransfe rase
MHACENDPQIRRTALYSTLAQVPEGKVVSYGQLAELAGLGRAARWVGRTL
SQLPGDTKLPWHRVLGAGGRISLPAGSPSGDEQRARLRMEGITVLNNRVD
IRRHGWRPVEHSG
>Pfl_1134 MutS 1 protein
MNKAVSDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAK
LLDITLTARGQSAGQAIPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDP
ATSKGPVERQVVRIITPGTVSDEALLDERRDNLIAAVLGDERLFGLAVLD
ITSGNFTVLEIKGWENLLAELERVNPVELLIPDDWPKDLPAEKRRGVRRR
APWDFERDSALKSLCQQFSTQDLKGFGCETLTLAIGAAGCLLAYAKETQR
TALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQ
TAMGSRLLTRWLNRPLRDLTVLLARQTSITCLLDRYRFENLQPQLKEIGD
IERILARIGLRNARPRDLARLRDALGALPELQVAMTDLEAPHLQRLATTT
STYPELAALLEKAIIDNPPAVIRDGGVLKTGYDSELDELQSLSENAGQFL
IDLEAREKARTGLANLKVGYNRIHGYFIELPSKQAESAPADYIRRQTLKG
AERFITPELKEFEDKALSAKSRALAREKMLYEALLEDLISQLPPLQDTAG
ALAELDVLSNLAERALNLDLNCPTFVSEPCMRISQGRHPVVEQVLTTPFV
ANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCEL
SLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGR
GTSTFDGLSLAWAAAERLAQLRAYTLFATHYFELTVLPEAEPLVANVHLN
ATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPSEVIVRAREHLSRLED
TALPHEAPKPAAKGKPAAPQQSDMFASLPHPVLDELAKLDLDDVTPRRAL
EMLYALKNRI
>Pfl_0980 Excinuclease ABC, C subunit-like
MNSLSENPLDADVSVSKSWFVYLVRAANGSLYCGISDDPVRRFAKHQSGK
GARFFLSSPAMALVYTERCRDKGDALRQERLIKKLRKSAKECLVASYRPD
>Pfl_0083 Radical SAM
MSTPLPPRGRGTATNPHNRFAPSRSVAEDDGWFQEVPLTQGTEVSFETAK
TIITRNTSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWDMSPGLDFETK
LIAKTNAAQLLEEQLGKKGYQCAPINLGSNTDPYQPIEREHRITRQTLEV
LLRYRHPVTIVTKGSLILRDLDLLTELAQQRLVAVMISLTTLDDELKRIL
EPRAAAPKARLRAIRVMREAGIPVGVLCSPMIPMINDSEIESLLTEAHAA
GAQSAAYMMLRLPLEVAPLFEEWLEAHYPQRAAHVLSLIRQSRGGELYDS
RFGTRMRGEGPFADLLAQRFAKALKRLGLNHREGFNLDCTAFCPPGRQMA
LI
>Pfl_2840 Phage integrase
MTVYLARLAPSSQLTMRYVLQDAADRLGFEDMNVEEIPWHALQPEDVVAL
VAALRADNYAPNTSSLYVNAIRGVMNEAWRMSLISQEHLLKMRSVKGIAG
TRLSQGRNLKRTLIHELMEVCAADPRPQGLRDAAVIALLYGTGMRKSESV
DLDLNQVDFNERSLCVTAKGNKQLIKYAPAWAFAKLNAWLEFRRSELKEG
ESDDAFLFNRIRRGSHITRERITKHAIYYIARQRGTQVGVKIMPHDFRRS
FITRVIEEHDLSIAQKLAHHSNIQTTANYDVRDDNERRRAVDRFDL
>Pfl_0320 A/G-specific adenine glycosylase MutY
MRAEQFSTAVLEWFDRHGRHDLPWQQNINPYRVWVSEIMLQQTQVSTVLN
YFDRFMAALPTVEALAAAPEDEVLHLWTGLGYYTRARNLQKTAKIVVSQY
GGEFPRDVEKLTELPGIGLSTAGAIGSISMGLRAPILDGNVKRVLARFTA
QEGYPGEPKVAKQLWANAERFTPQDRVNAYTQAMMDLGATLCTRSKPSCL
LCPLEKGCEAHMLGLETRYPIPKPRKAIPQKRTLMPLLANEDGAILLYRR
PSSGLWGGLWSLPELDDLDDLQHLAAQHSLELGEQQALPSLVHTFSHFQL
SIEPWLVQVQEAGGHVAEADWLWYNLATPPRLGLAAPVKTLLERAAAVLN
AGEST
>Pfl_4520 Ribonuclease T
MSEDHFDDELDGQGGGGSRHPMAARFRGYLPVVVDVETGGFNSATDALLE
IAATTIAMDEKGFVYPDHTYFFRVEPFEGANVEPAALEFTGIKLDHPLRM
AVSEETALTDIFRGVRKALKANGCKRAILVGHNSSFDLGFLNAAVARLDM
KRNPFHPFSSFDTATLAGLAYGQTVLAKACQAADIDFDGREAHSARYDTE
KTAELFCGIVNRWKQMGGWEDFDD
>Pfl_4685 Protein of unknown function UPF0102
MPDRSHLQSGKDAERQALEHLQHQGLRLLAQNWLCKRGELDLVMLDGDTV
VFVEVRYRKNTQWGGALDSIDGRKRQKLIFAAQYFLQRESRWANSPCRFD
VVAIDSHQDQLNWLQNAFDS
>Pfl_2944 DNA topoisomerase, type I, putative
MPDTALTEVLPSDLHYVDDTQPGISRKKLRGKFAYFNPEGQRITDPDEIK
RINSLAVPPAYIDVWICADPRGHLQATGRDARGRKQYRYHARWREVRDAD
KYSRLREFGLALPKLRKQLEALLASPGFSRDKVMATVITLLDATLIRVGN
TQYARDNRSYGLTTLRSRHVEVNGSAILFQFRGKSGIEHQITVKDRRLAR
IIKRCLEIPGQNLFQYLDENGERHSVSSSDVNAYLQNLTGADFTAKDYRT
WAGSALALAVLRELQWESETEAKRHVVEMVKGVARQLGNTPAVCRKCYIH
PAVVEHFMLGALAELPKPRIRKGLRKEEVALALFLERMVEQADTP
>Pfl_2032 Integrase, catalytic region
MGISRQAYYKRNRACDARARHAQEVMGFVREKRLRQPRLGTRKLHNLMHT
EPEVSVKVGRDRLFDILRDRRELVPRRRAYHKTTDSHHRFRRHPNLLKDG
PIQVVAKAPEQVWVADITYLPTQTGVAYLSLITDAYSRKIVGHHVHESLH
TESVIQAFNKALKQRTTKQCLVHHSDRGVQYCSELYQRLHAKYGITCSMT
DGYDCYQNALAERVNGILKNELLLHRPKNFAEAIRMVDESVQIYNNERPH
LSLKYKTPDAVHRAF
>Pfl_1805 AAA ATPase, central region
MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVG
KTTIARIIAKCLNCETGITSSPCGECSVCREIDEGRFVDLIEIDAASRTK
VEDTRELLDNVQYAPSRGRFKVYLIDEVHMLSSHSFNALLKTLEEPPPYV
KFILATTDPQKLPATILSRCLQFSLKNMTPERVVEHLTHVLGAENVPFED
DALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAMLGTLDHGQVY
DVLHALIEGDAKALLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE
GVDNGHGDRDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEM
VLLRMLAFRPADTADAPRQPLKPVGISQATVDSANSVAAAPKPAPVVAVA
VAPAPAPVVAPAPAPEPAPVAPVIAPEPVPEPEAEPEPVAVEEVVDLPWN
DPVEPAPVQQPAVEPVLETTAEQPDLPPMPLPTPDSVVPDAPEWAAAPIP
EPSVADVDAATPGMDMDDEPPLDEDYIEPDMDSAYSYLDDLASEHAAEPA
PEPEPEPAAAPATGLALQWLELFPQLPISGMTGSIAANCTLIAVDGDNWL
MHLDPAHSALFNATQQRRLNDALNQFHGRTLTLTIELIKPEQETPAQAAS
RRRANRQREAEESIHGDPFIQQMVQQFGAVVRHDTIEPVDALVSQG
>Pfl_0521 DNA mismatch repair protein
MNQVLNAARIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGAKRID
VDVEQGGVKLLRVRDDGSGISADDLPLALARHATSKIRNLEDLEQVMSLG
FRGEALASISSVARLTLTSRTRDADQAWQVETEGRDMAPRVQPAAHPVGT
SVEVRDLFFNTPARRKFLKTEKTEFDHLQEVIKRLALARFDVAFHLRHNG
KTILSLHEAHDDAARARRVAAICGSGFLEQALPIEIERNGLHLWGWVGLP
TFNRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFALFFEV
DPAAVDVNVHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPEDQLAGSVT
TAIVRPTGLEAGEFGPQGEMRLAANALLEQPQAQPAFNTASGASAGGAYQ
YQYTPRPQSTVPVAEAQAAYREFFAPLPEANANALPAGQEDIPPLGYALA
QLKGIYILSENAQGLVLVDMHAAHERIMYERLKIAMASEGLSGQPLLVPE
SLAVSQREADCAEEHAAWFQRLGFELQRLGPETLAIRQIPALLKQAEANR
LVGDVLSDLMEYGTSDRIQAHLNELLGTMACHGAIRANRRLALPEMNGLL
RDMENTERSGQCNHGRPTWTQLGLDDLDKLFLRGR
>Pfl_0688 Exodeoxyribonuclease V, RecC subunit
MPDTQSLNAAFMVVQSNSLDELRSLVISIMRRYPLAPLENEIALVQSNGI
AQWLKLALAEDPEADDSGGCGIAAAIDVQLPGSFMWQLYRMVLGREEIPA
TSLLDKAPLTWRLMRLLPQVITRPHFEPLQRFLIHDTDLRKRYQLSERLA
DLFDQYQVYRADWLEDWAEGHHQLRNVRGEAKPLPPTSCWQAELWRALLD
DVGEQGMAQSRAGVHQRFMERINSLERAPTGLPQRVIVFGISSLPAQVLE
ALAGLSRFSQVLLCVHNPCRYHWADIVADKDLLRHQYKRQARKNGMPVVL
DSEMLHQHAHPLLAAWGKQGRDYINLLDSYDDPDSYRAAFRNGRIDLFSE
NQPKNMLNQLQDDILELRPLNETRALWPAVDLTQDDSIRFHIAHSAQREV
EILHDQLLARFSANPQLRPRDVIVMVPDIDSYAPHIRAVFGQLDRHDPRF
IPFTMADQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRARFG
VQERDLPTLHRWIEGAGVRWGIDAGQRAELGLPDELEQNSWRFGLRRMLL
GYAVGSSGACGDIEPYDEIGGLDAALIGPLVALLDALELSHQQLMKPAQP
QEWGHRLQALMQLFFKPEDEHDDYLLAQLEELRETWMETCEAVGLLDELP
LTVVREAWLAGLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDG
DYPRAQPPLDFDLMGSDYRPGDRSRREDDRYLLLEALLSARHQLYISWVG
RSIRDNSERPASVLIGQLRDHLANGWRSSDNKEDLLIAMTQEHPLQPFSS
RYFHEEDKLFSYASEWQVLHQPHEQNDTATMLVPHIQEEPLSLELLQDFL
RNPVRHFFTQRLKVYFEAAQIPQADEEPFVLDALQRYMLSDSLLGAALRH
PDNVDQALESQARRLQNSGLLPIAGFGECLQRELIEPLPDLLQRYQQLLA
LWPTPLSNALPINFEWQELRLEGWLGGLHRRADGGVLSVTTIPNSIGSIK
SRKWHRLTKPWVSHLVACASGLSLTTALVASDDTLLLEPLEQTRAGRVLE
DLLLAWQTGMRQPLPVAVKTAFAWLGQTDPVKAEAAARKTYEGDGQTSEG
ERRESPALARQFPDYDALQADETFSGWCDALYRPLLEAPWHSWTHEEAGA
>Pfl_4437 transcriptional regulator, putative
MSLINEYRATEEAIKELQARLKNLSQDDKLQAELEFEGKLRTLMGEYSKS
LRDIIALLDPESKTKAPRGGAAKTTGTKRARKVKQYKNPHNGEVIETKGG
NHKTLKEWKAKWGGDVVEGWATLLG
>Pfl_5575 Serine/Threonine protein kinase
MTEIESSVDDLLMSEEQANNLTYFAFAKQHNAEPALAPTKASVGALPDVL
AGRYHLERLLGAGGMGAVYRARDLLHEQFGDPDPYIALKILSEEFAESPD
ASALLYSEFALTRRLRHDNVLRPHTFEVDTDCQRAFITMELMRGLTLDKL
LCERPLGLPWKELRDIALPLLDALAYAHRRGVLHGDMKPSNVMLSEDGVR
LFDFGLGQAEEGILPGLPHLSRERFNAWTPGYAAPELLEGQPLSASADVY
GVACVIYELAGGKHPFRRLPSTQARDEHLERELQAPANLPTHCWPALRTA
LAFDAAERNISAEQLRDALGATSSWLQRLRLRA
>Pfl_5356 hypothetical protein
MSALAPKPVFQFTLSDWNTRASVRTSPHDYHLPDNVQEQLETRHWFPPAF
LPYLAHPSIEAAGRSMLHRLTARHLVHFLDYTTLLEHRIVNRAVETIVHG
ELPVAVPAPMKTAALQLYTDEGYHALFSSQVAEQIASLYAIAGRPVMPRR
ITRMNLLIARTGQEQRPLACFLLGFVSETIIARELLDVCRDSLVSGVNDM
LRDHLTDEARHSRYFTEVFHYLWLHLNPRQRTFTATTLLDILEIFFDVDE
HWLQESLRGAGIANTTVREILGTMTTAQARRQRARAGSLATLSALKKAGF
FTEPQNQTLFARAGLIDG
>Pfl_1668 Putative exonuclease, RdgC
MWFKNLLIYRLTQDLPVDAEALETALATKLARPCASQELTTYGFVAPFGK
GEDAPLVHVSGDFLLISARKEERILPGSVVRDAVKEKVEEIEAEQMRKVY
KKERDQIKDEIIQAFLPRAFIRRSSTFAAIAPKQGLILVNSASPKRAEDL
LSTLREVIGTLPVRPLTVKTAPTAVMTEWVTTQQAAPDFFVLDECELRDT
HEDGGIVRCKRQDLTSEEIQLHLSTGKVVTQLSLAWQDKLSFMLDDKMTV
KRLKFEDLLQDQAEQDGGDEALGQLDASFTLMMLTFGDFLPALVEALGGE
ETPQGI
>Pfl_1801 NAD-dependent DNA ligase
MTAAKDRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANP
ELITSDSPTQRVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTE
GLDLPAGDLFGGGAAVEYSCEPKLDGLAVSLLYQDGVLVRGATRGDGTTG
EDISVNVRTVRNIPLKLHGTGWPATLEVRGEVFMSKAGFERLNASQLEVG
GKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSHDISDTHIGNL
QQLKAWGMPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARL
KPVKVAGVTVANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVME
RRPEDARPVQIPESCPVCGSHVERTQLVKRSKGKETISEGAVYRCVGRLA
CGAQLKQAIIHFVSRRAMDIEGLGDKSVEQLVDEGLVSSPADLYALKFED
IVDLEGFAEVSSNKLLAAIEDSKKPGLARFIYALGIPDVGEETAKVLARS
LGSLERVQQALPQVLTYLPDIGLEVAHEIHSFFEDAHNRQVITELLGHGL
QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFESLEGVMN
ADWLDMRQALPEKQANSVREFFALPEHRQLAEDAEKQLRDFGMHWQSEKK
VVEGLPLAGETWVLTGKVELMSRDVAKEHLESLGAKVAGSVSAKTHCVVA
GPGAGSKLTKANELGVKVMDEEAFIAFLKGHGISA
>Pfl_0011 DNA-3-methyladenine glycosylase I
MPRCFWCNEDPLYMAYHDQEWGTPLRDAQGLFELLLLEGFQAGLSWITVL
RKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRIKLNAARRNAQ
AWLALEDPVAFLWSFVDNRPVINHFKDRSEVPAITPQAVAMSKGLKKAGF
TFVGPTICYALMQASGMVMDHTQDCDRYAQLANGG
>Pfl_3059 Integrase, catalytic region
MAETGGIRPSVRRRSRLALTLAEREEISRAVVAGNSIRSMAALLGRAAST
ISREIRRNGGQGCYRANQADQAAWDRAHRPKVCKLVENRTVAQIVADKLQ
LQWSPEQIAGWLKRTYPDDTSYQVSHETIYRTLFIQARGALKKELLEHLR
RTRAMRRSRQHTQKKENHGRITDAVSIRERPAAAKDRAVPGHWEGDLLCG
SRNSQIATLVERQTRFVMLVKLDGKDSETVISALIENARNLPQELYKSLT
WDRGKEMADHKRFTVATDIKVYFCDPHRPWQRGSNENTNGLLRQYFPKGT
DLAEHSQATLNEVARQLNSRPRKTLDYETPAERFSQSVASTG
>Pfl_3151 conserved hypothetical protein
MGAVVALDTLFNGGQVWKGRPAPPAASPQPTGHAALDAALPSGGWPEAAL
SEILLAGPGVGELQLVWPTLARLSAAGERIVLVAPPFVPYPQAWANAGVD
LRQLSVIQASERDALWAAEQCLRSGSCGAVLCWPHKADDRALRRLQVAAE
TGQTLAFAWRPLSEAVNPSPAALRIAIDARPAQLRVLKCRGGLARSAPIA
FTVGH
>Pfl_1803 hypothetical protein
MKSLARIDPVRSASWPRGFMLPEHSDLSIPVFLPVTDETCANLLQAGGAK
ALESLTDPELAAVLVIQNLVQTKEQDLGAVAVEKILAKLLSWAVDTRQAT
TASLLSEAQRLFDPRKLYFGLKVLNPLNLRFLLVEEISARDYLLPDGQWD
FEYKVRRHRSHDPFSQPIVTPRYRERWLSPAQDKLVRTFRANLDEDLHVQ
GYAGIGKSHLLVALLEHLRPEKTLLLARTPAKLEVLRQRMTGPSEKKAGK
TFLAFAQSLMLGRRPQAEGATRILSRQALAQELNIYGFHHHDGQATLELC
LKVIERYCRFRDHTFSAKHLPHFNQPLSSVDAQVLLEYSSRVWGYLELNP
VWGSQTGFEALLMIKRACIAGCVVPARYTHVLIDESQDIPGSLLQIIERG
RQVLITLGDEYQQASGVPVKRHREVRQSDISYSVRSGRNVERLVNPLIAR
HSQKGKIPFEGASDADVVIKEYPEGFVPSEGCVVLTASPWDSMIWAIHLH
DSNCKFRFPDKRTQDELKHFMATAIELFKPDFYRSEFSENGVHPYFSDLP
DWQAVCDANQFDESFLRVKAKLENGFMIADLTRLNRMIDNAGNGCLLMLA
EEAGGMEFDKVLLTPGLLTNEKFKDAYAFDQRICAVYIAISRARLKLYVP
YDVVEWVEYHEYQQFRDTAGH
>Pfl_3033 probable DNA primase
MRDIYQDVTDKIVTALEQGVAPWIKPWSSSGSAHVGHHHPYPINAITRRP
YSGINLPLLWAEARLQGFTQDRWLTFNQAKKAGGHIRKGEHSTLAVLYKP
MEREEQTESGQPVLDENGQPKVAHFGILKTHFLFNIEQTEGLETLNETVL
ETEPSDPFLPNGAAENLLLRSGANIIHRFADEAFYHPIRDLIQLPTKAQF
HDQGGYYATALHELTHWTGHHTRLQREGVTSSCPFGSPGYAFEELIAEMG
AAFLCAYAGIQGELRHGGYIDSWLGLLKADKRAIFRASGQARSASEYVLN
LEQQLRQDVLDDSLCMNDGA
>Pfl_3000 Single-strand binding protein/Primosomal replication protein n
MSTFFVGEGNIGSAPEFQEFPSGNDEPRRLLRLNVYFDNPVPREGNYEDR
GGYWAPVELWHREAEHWSTLYQKGMRVLVEGRTVRDEWEDSEDNARVTFK
IEARRVGILPHRLNDVVMRERSSEPAASQNTEQASTPASKPKKRRG
>Pfl_2156 DNA-3-methyladenine glycosylase II
MPDPYQPASEFLASLDADWQRHIAAVGPCLHQPHPTRDPYESLVRAIAYQ
QLHAKAGDAIVGRLVGLFPGQTFPRPEQILATDFDQLRGCGFSAGKIATI
QGIAQATLDGVVPDYPTALAMEDEALIERLVSLRGVGRWTVEMLLIYSLE
RPDILPADDFGVREGYRRLKGLEVQPARKQMIEIGLDWKPFRTVAAWYLW
RVPKSPSP
>Pfl_2158 Methylated-DNA-(protein)-cysteineS-methyltransfe rase
MNIQTAVLPPHAEMVRAMLASDTAYEGVFFTAVKTTGIFCRPTCTARKPK
PENVEFFAHADDCLSAGYRACLRCKPLDAAAIAPDWVQQLLKAVDADPEL
RWSDAQLLAEGIEPLKLRRWFKQHFGMTFHAWLRTRRLGVALGGIKQGTS
IDHAAFDSGYESLSGFRDAFQKSFHITPGRAAASEPLLFTRLTTPLGPMI
AMAERRGLVLLEFLDRPALTREVEELQNRYGYVVAPGQNAHLQQIDNELA
LYFAGKLSEFSVPLHLPGSEFAQQVWAELRQIPYGQTSTYGTIAARLGKP
GASRAVGLANGHNRLSIVVPCHRVIGADGSLTGYGGGQPRKAFLLRLENA
AVQLTQQLAF
>Pfl_0499 Gram negative topoisomerase IV, subunit B
MATPSASSYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDE
ALAGHAKSIQVILHADHSLEVCDDGRGMPVDIHPEEGVSGVELILTKLHA
GGKFSNKNYQFSGGLHGVGISVVNALSTQVRVRVKRDGNEYEMTFADGFK
ATDLQVIGTVGKRNTGTSVYFAPDPKYFDSPKFSISRLKHVLKAKAVLCP
GLLISFEDKGTGEKVEWHYEDGLRSYLVDAVSEFERLPDAPFCGNLAGTK
EAVEWALLWLPEGGTSVTESYVNLIPTEQGGTHVNGLRQGLLDAMREFCE
FRSLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFV
SGVVKDAFSLWLNANPETGLALAELAISNAGRRLKASKKVERKRITQGPA
LPGKLADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILN
TWEVDGSEVLASQEVHNIAVAIGVDPGAEDMSQLRYGKICILADADSDGL
HIATLLCALFVQHFRPLVDAGHVYVAMPPLYRIDLGKEIYYALDEAERDG
ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLGGD
FAETSEMMDMLLAKKRAGDRKTWLESKGNLAEVLA
>Pfl_0003 DNA replication and repair protein RecF
MSLSRVSVTAVRNLHPVTFSPSPRINILYGANGSGKTSVLEAIHLLGLAR
SFRSTRLLPVIQYEQLACTVFGQVELAEGGHSALGISRDRQGEFQIRIDG
QNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMA
TWQRLQKALRQRNSWLRHGTLDAVSQAVWDRELCQASAEIDEYRRAYIKA
LKPVFEQTLSELVELEGLTLSYYRGWDKDRELSAVLAGSVQRDQQMGHTQ
AGPQRADLRLRLGAHNAADILSRGQQKLVVCALRIAQGHLVSQARRGQCI
YLVDDLPSELDESHRRALCRLLEDLRCQVFITCVDHELLREGWQTETPVA
LFHVEQGRITQTHDHRE
>Pfl_0761 DNA repair protein RecN
MLVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDRA
DSGVVRPGADKADILATFDLADIPEASAWLAERDLEIDGPCILRRVITSE
GRSRGYINGTPCPLGDLKALGELLIDIHSQHEHQSLLKTDTHRRLLDEYA
GATDLARQVHLAAQRWRQTRQELERLSNSGDEQRARHQLLSYQLEELENL
GLGENELEELEQEHKNLTNAETLLGICRQVVEQCSESDSGNVLNALTASL
NRLSSVNSSVGALGEASSLLTSAQIQVEEAVGELNRFLDNFDADPARLQY
LEERLDSIYTLARKHRIQPTEVAEMQQKLLDEIEALDANDESIERLAEEL
ASYARHYQEKARELSELRHQAAGSLASAVEQEIQRLGMPGGRFTIELRAN
NSSELQPNGLEQVELLVSANPGQPLKALAKVASGGELSRISLAIQVITAQ
TSRVPTLVFDEVDVGIGGPTAEIVGQLLRRLGDRGQVLTVTHLPQVAAQG
HQHLFVHKVRGEQATHTAVSKLSKNDRIEEVARMLGGIDLTKESLAHAKK
MVVTAKV
>Pfl_5378 NUDIX hydrolase
MIDPDGFRPNVGIILTNDAGQVLWARRINQDAWQFPQGGINPEETPEDAL
YRELNEEVGLEREDVEILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWF
LLRLISNEQRVRMDLTGKPEFDGWRWVSYWYPLGQVVTFKREVYRRALKE
LAPRLLARD
>Pfl_5600 Histone-like DNA-binding protein
MRKPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTF
LQRHRGARTGKNPQTGEPVKIKASNTVAFKPGKSLKDSVNP
>Pfl_1468 ATP-dependent DNA helicase RecQ
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQ
VPALLRDGLAVVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLA
NRIKRGEVKMLYLAPERLVQPRMLSFLQGLNIALFAIDEAHCVSQWGHDF
RPEYLQLGQLAEMFPDVPRIALTATADKRTREEIVTRLHLQNAERFLSSF
DRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKKVEEVAAFLTE
QGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGD
ERHKRLEQHKLDAMLSLCEETRCRRQALLAYFDEDMPEPCGHCDNCTDGV
QTWDATEPARQALSAIYRTGQRYGVGHLVDVLLGKDNEKVRSFGHQHLSV
YGVGKALSESEWRSLFRQLVARGLADVDHEGYGGLRLSDTCRPLLKGEVS
LELRRDLKPQVSAKSGSKSPASQLVRGEEREQWEALRALRRKLAEEHGVP
PYVIFPDSTLLEMLRSQPTSLADMARVSGVGARKLERYGEAFLEVLGGEA
EAPKVVADVRHELITLARAGMTPLQISGQLQCSEKNVYTMLAEAIGKQQL
SLEQALDLPEDLMGEVQDAFLDGEGELPSVAEVAELFAGRVPEGVLYCVR
AALQSEFEM
>Pfl_0625 NUDIX hydrolase
MDESAREAAHRAASDAEQIAWVDEQDNLLGSLVRADLRERGLIGRGTYIM
LFNSAGELCVHRRTLSKAIYPGYWDVAAGGMVQANETYAESAARELEEEL
GVSGVKLTAHDHFYFEDTGNRLWCSAFSAVWDGPLILQPEEVLEARFIPV
EQVMLEIQQKPYCPDSLAALRRYLKAQQSDVAKNT
>Pfl_0275 ATP-dependent DNA helicase RecQ
MHNTLEQVFGYPQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQVPAL
LLPHLTLVVSPLLALMQDQLEFLRRHGISAGSIDSTQSREDANDVMARAR
SGELKILMISVERLKNERFRNFLQQVPISLLVVDEAHCISEWGHNFRPDY
LKLPDYQRQFNIRQTLLLTATATPKVIADMQAKFSIAEDDVVTTGFYRPN
LNLLVEPVRGQDKRRRLVEWMSARAGQPSIVYVTLQKTAEQIAEHLERNG
IQAEAYHAGLPHEQRDAIQKRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQD
GIRHVLDELQAAAPEGQWEFLLGPLADQSNIRALPLKTLLVQLELRGLIA
PRYAYYAEYRFKYLLEPDTLLERFEGERRDFVAAIIQTSSRARTWATVNF
EAMYEQYSAERNRVVKALDYFQEKGWVELESKQMTEVYNVLRGDFDSQVL
SAELHEYFTRHEQTEVARIHAMLELFATERCLGYRLAEYFGDHNAPQQCG
HCSVCHGHVARLPAPPELPALVDKNFTELCGEFIHRHQQYAGSAPSAERL
TRFLCGISVPLFTKLKARAISGFAALEEYPYAEVRAWAQAHL
>Pfl_0033 Transposase, IS4
MAYIQGESRSQTSLFPVSLEELIPEDHLVRVIDLYVAKLDLGQLGFEKAQ
PKASGRPAYDPADQLKLYLYGYFQRIRSSRRLEAECQRNIEVMWLINRLK
PDFKTIADFRKNNKVAFVTTCRAFVQFCRSVGLIAGDLVAIDGSKFQAVA
SSRRHLNLNQLKRQEEKLDKRIAQYLADLDAADKAEGEQVVDRTAIKAAL
AKLEAKQQDNRSCQALMKSMSLEQFNTHESDARMMRTPKGARVAYNVQTA
VDAEHCLILHHEVTQDGDDRKQLEPIAKAAKAELGQDTLTVTADMGYSNG
QQFQACEEASITVYVPPNRTSNPGGETLFERQDFTYDAEQDRYQCPAGQW
LTLKQRYKGDRIYQAAVSDCAGCALKAQCTTAQRRYVSRHAQEEAFERMA
QRMQLHPEMMERRRSIVEHPFGNLKQWLFGNGRFLLRQLEGTKAEMALAV
TAYNFKRAISVLGAKKMMQLMG
>Pfl_3566 Methylated-DNA-(protein)-cysteineS-methyltransfe rase
MAYTFITLPSPVGELKLVANGSRLAAILWENDKPNRVRLGPMSEAPDNPV
LMKTARQLEEYFAGTRNAFDLELDFAGTEFQKKVWAALLTIPFGETRTYS
QIAEQIGHPSAVRAVGAANGRNPISIIAPCHRVIGASGKLTGFAGGLEAK
ERLLTLEGGQWSDIGKTGDLF
>Pfl_5559 ATP-dependent DNA helicase RecG
MTELSQVSVTALKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVP
IGALRPGQDAVVEGTVSGADVVMGRRRSLVVRLQDGTGGLSLRFYHFSNA
QKEGLKRGTRIRCYGEARPGASGLEIYHPEYRAINGDEPPPVDETLTPVY
PLTEGLTQARLRQLCMQTLTLLKPATLPDWLPTELARDYQLAPLADAIRY
LHNPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLRESMRSLRAPA
MPKATKLPAKYLANLGFNPTGAQQRVGNEIAYDLSQHEPMLRLIQGDVGA
GKTVVAALAALQALEAGYQVALMAPTEILAEQHFITFKRWLEPLGIDVAW
LAGKLKGKNRVAALEQIASGTPMVVGTHALFQDEVQFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMCPHQLIMTATPIPRTLAMSAYADLDTSILDEL
PPGRTPVNTVLVTDTRRVEVIERVRSACAEGRQAYWVCTLIEESEELTCQ
AAETTFEDLTAALGELKVGLIHGRMKPAEKAAVMAEFKAGNLQLLVATTV
IEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSAVSHCVLLYHPPL
SQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTGLLQFKVADLM
RDADLLPAVRDAAQALLERWPTHVSPLLDRWLRHGQQYGQV
>Pfl_2131 Integrase, catalytic region
MGISRQAYYKRNRACDARARHAQEVMGFVREKRLRQPRLGTRKLHNLMHT
EPEVSVKVGRDRLFDILRDRRELVPRRRAYHKTTDSHHRFRRHPNLLKDG
PIQVVAKAPEQVWVADITYLPTQTGVAYLSLITDAYSRKIVGHHVHESLH
TESVIQAFNKALKQRTTKQCLVHHSDRGVQYCSELYQRLHAKYGITCSMT
DGYDCYQNALAERVNGILKNELLLHRPKNFAEAIRMVDESVQIYNNERPH
LSLKYKTPDAVHRAF
>Pfl_3064 Phage integrase
MSRTTAPLTDAACRLARPTDRPYKLFDGDGLYLLIQPNGRKGWRLRYVKP
DGREGLTSLGSYPVIGLAEARQKRLDAKRMLADGIDPVESKRKAKTEDAV
NGRTFESVALDWHKNMSARWTLDHSKNVFNRLNNYVFPFIGARAIADLDT
YDLMQPLEAIRKRGTIDVALRVQRYLQSIMREAKRLRLIPMNPAYDLQGL
IKAPRVSHRPTLPLSRLPELLARIYAYKGRELTRLTLMLSLHVFVRSSEL
RFARWCEFDLKRCVWEIPDTRPELEDVRHSTRGTKMAGDVHLVPLSPQVV
AVLEQIHTLTGAFDLVFAGDARAWKPMSENTVNKALRTMGYDTKTEICGH
GFRSMACSALIESGLWSETAIERQMSHRERNSVRAAYIHKAEFIEERRLI
MNWWSRYLAANLQEHVTPHEFANQVGENVTRLKVNVAQ
>Pfl_5005 Exonuclease VII, small subunit
MARKKAALDFEQSLADLQTLVERLENGELSLEDSLTAFEQGIGLTRDCQA
ALAQAEQKVQVLLERDGELAEEPFDADQPE
>Pfl_2186 Ribonuclease H
MSESVDSVELFTDGACKGNPGPGGWGALLVCKGVEKELWGGEANTTNNRM
ELLGAIRGLEALKRPCEVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEP
VKNADLWKALDEQVNRHKVTWKWVRGHIGHHGNERADQLANRGVDEVRGY
KQS
>Pfl_0001 chromosomal replication initiator protein, DnaA
MSVELWQQCVELLREELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDW
VNEKYLGRVLELLDEHGNGLAPSLSLLIGSKRSSAPRAAPNAPLAAAQVS
QAQANAAPASAPAPAPTPAPTKRTTQKTEEISEEPSRDSFDPMAGAASQQ
APVRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADN
PKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADM
VKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEG
GQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKA
DQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIR
ESLKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVA
MALSKELTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIREDYKN
LLRTLTT
>Pfl_1868 Exodeoxyribonuclease III xth
MKKMRIATFNVNGLRARLPNLLEWLRREQPDIVCLQELKMLDSAFPAADL
EAAGYGAIWHGQASWNGVAILARDAQPLESRRGLPGDPDDKHSRYLEAAV
HGVLVGCLYLPNGNPQPGPKFDYKLAWFERLIKYARDLQSSDHPVVLAGD
YNVVPTDLDIYNTRSWLKDALLQPESRECYQRLLDQGWTDSLRHLYPEDR
LYTFWDYFRQHWQKNSGLRIDHLLLNPTLSPYLHEAGVDAWVRNEPHASD
HAPTWIRIGSRKRR
>Pfl_5351 DNA-formamidopyrimidine glycosylase
MPELPEVETTRRGIAPHLEGQRVSRVIVRDRRLRWPIPEDLDVRLSGQRI
VLVERRAKYLLINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELES
GLALRYTDPRRFGAMLWSNDPLNHELLIRLGPEPLTDLFDGERLYQLSRG
RSMAVKPFIMDNAVVVGVGNIYATEALFAAGIDPRREAKGISRARYLKLA
IEIKRILAAAIERGGTTLRDFIGGDGQPGYFQQELFVYGRGGEHCKVCGT
GLREMKLGQRASVWCPRCQS
>Pfl_1195 DNA-directed DNA polymerase
MTQRKIIHVDCDCFYAAIEMRDDPSLAGKPLAVGGSADRRGVIATCNYEA
RAYGVRSAMSSGHALKLCPDLTIVKPRMDAYREASKEIHTIFSDYTDLIE
PLSLDEAYLDVSDSAHFGGSATRIAQDIRRRVSNQLHITVSAGVAPNKFL
AKIASDWRKPNGLFVITPDQVEEFVSGLPVSKLHGVGKVTADKLGKLGIN
DCLQLREWDKLALVREFGSFGERLWSLARGIDERLVHNDSRRQSISVENT
YDVDLPDLRSCLDKLPELLETLKTRMARIDSSYRPGKPFVKVKFHDFTQT
TLEQAGAGRDLGSYQLMLTQAFNRGGKPVRLLGVGVRLEDLRGGFEQMEL
FER
>Pfl_4623 hypothetical protein
METACTSGSNRTGASHGNFGTSVLQVTGRGWASAGKQQAAAGYAAALSEG
NDADKQRAEKLLKQASEALTLATRGKRGVATVVNALTAEVEKLNETITVT
KQHLTDLRQDQLRAVRFLWADRLDKAAQDFANVAAQLSAAEKALGRYSSL
QDLYLPLQAPMGRQHISQSEIREKANAISIEQLLAA
>Pfl_4920 DEAD/DEAH box helicase-like
MTFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPVVLAGRDLMAAAQTGTG
KTAGFALPLLQLLAMEGPKVTANSVRALILVPTRELAEQVHEAVRQYAEN
LPLRTYAVYGGVSINPQMMKLRGGVDLLVATPGRLLDLFRQNALKFNQLQ
TLVLDEADRMLDLGFSEELANIYRALPKKRQTLLFSATFSDDIRLLAGQM
LNDPQSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMRKNKWKQVLVF
AKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCA
DEVNMLSAIEMLTRSTLKREIEPDFVPEHRVPDTDASGQVIKKPKKPKKP
KASGGGGGKRNLGKWVDSGETQAPEPSIKPVRKVPVFNTGPRKRKP
>Pfl_2982 transposase, OrfB
MRELALVSKQPGSHAYKQATVERPDIQNILNREFDVPASNQVWCGDITYI
WAQGKWHYLAVVPDLYARRIVAWALSNKPDTDLVVKALDMAYEQRGRPQE
LMFLSDQGSQYDSLQFRQRLWR
>Pfl_3217 exonuclease SbcC
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDAL
CLALFGAVPRLNNTGRDAKVPDADGEIATGDPRTLLRRGTGEGFAEVDFV
GVDGRRYRARWEANRAREKAGGKLQASRQSLRDIDQDQLLASQKGEYKTQ
LEAALGLNFEQFTRAVLLAQSEFSAFLKADDNDRSELLEKLTDTALYTRL
GRRAFDKTKEAREAHKQLQDQATGVTPLAPEARAELDERFNVAQQQLKLQ
QAQLKQIEQQHDWLKELLRLQDSQQAAAEQLRSAEHERESLAGERLKLTR
LEQLAPQRHQFARKTELDTQLTPLAEQISAHTRQQSELAERQTRLEQDLA
AAQIALTQAQTQLSESAPLLRQAFEEQSTLARLAKDVASGAEAKHAAEQA
CTQGQSTIQSLLDQQKQVAERLQRIAADLEQSAHLAPLSEAWNAYRDRLQ
QLMLIGNRLNKGQGELASLEENAARASEALATQKQQLEVLFKEAGAEPDA
VAEQIGILGTLLQDNRKQLRAIEDLTRLWASQQDLDKRSAELQQRQLDAQ
QERERLTQDGVKTKSELTVAEQTLNVTRELLERQRLARSASVEELRAQLQ
DDQPCPVCGSNEHPYHQPEALLQSLGRHDESEQASAQQAVDQLKEKLTEL
RASVGGVIAQQKELLQQQEQLAAQQQSLTPSIEAHPLAASLLDQDSDKRA
AWLTRQNEQLNQSITQDEQRQTALLTLQQDAARLTQQLRQAETAHQQASQ
HLSNQQRELSADRQRLDEELAAFATLLPSDTLEALRAEPASTFMQLDRQI
AERLAQVDQQKEELAEQQQRQQTLEKEQDRQQGRVQQLQNAEQQLNALTG
QQQASQEKLAHLLGDHSCAEHWQQQLEQAVEQARNAESTTTQALQDARTQ
RVQIAAELKAQQERLQALETEDRDLAGKIADWRARHPELDDGGLEDLLRI
DDAQVDELRQRLQHNEKAVEQAKVLLQERDQRLRDHQAQHNGNLDAEQLA
SALADLQNQCTASEQQCAELRAEQAEDQRRQNANQALAQQIADAYAEYQR
WARLNALIGSATGDTFRKIAQAYNLDLLVHHANVQLRQLVKRYRLKRGGS
MLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASMASSTLKIESL
FIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
QRQGNGLSTLEVK
>Pfl_1115 Ribonuclease H
MSKTSMQMGLDFTLVAEVEELVAGVDEVGRGPLCGAVVTAAVILDPNRPI
LGLNDSKKLTEAKREKLYDEICEKALSWCIARAEVEEIDELNILHATMLA
MQRAVAGLHIQPKLAMIDGNRCPKLPMRSEAVVKGDSKVPAIAAASILAK
VSRDREMAAFELIYPGYGISGHKGYPTPVHLEALVRLGPTPIHRRSFAPV
RQAYEALEGLVQV
>Pfl_1211 ATP dependent DNA ligase
MKDFAGLYAELDATTSSNAKLAAMQTYFAQAQPQDAAWAVYFLSGGRPRQ
LVPVRILRDLAVEMSGLAPWLFEESYQAVGDLAETISLVLPEHPYTSEAG
LAEWIEDKLLPLRGETPEYLAHQLPALWAQLDRPSLMLCIKLITGSFRVG
VSKLLVTRALASMAGLDSKRVAQRLVGYTDLSNRPNAASYLKLIAPESSD
EHAQRGGQPYPFFLAHALAQPVETFEALLGPASNWQVEWKWDGIRAQVVK
RDGKLWVWSRGEELVTERFPELDTLVHGLPDGTVIDGEIVVWKNRRPVTE
DAFDPQSTEAPAVQPFALLQQRIGRKSLDRKILEDAPVVVLAYDLLEWQG
EDWRNQPQARRREQLEQVIARCNNPVLLPSPILTGDDWFDLARQREASRR
LGVEGMMLKARDAMYGVGRTKDMGVWWKWKVDPFSVDAVLIYAQRGHGRR
ASLYSDYTFAVWDGPPGASARALVPFAKAYSGLTDAEMREVDSIVRKTTV
EKFGPVSSVKPSLVFELGFEGIALSRRHKSGIAVRFPRMLRWRQDKTVDE
ADSLATLQNLLV
>Pfl_3868 SNF2-like
MPPPLSKPLASSWVSRFKEQSLERGRRYALENRVRFVQVGDATITASCEG
SGGNVYRQTIHLRESAKGTLLMVDATCTCPVHSNCKHCAAVLLQVQETLE
YPAAAKDAELLEKLQAVLENRSPKSPPQVLVDNVQPVPRLWLASVEFSAF
EPRNGKMQRYIQHRAALSFSYLDEYVSGQKNSDILIRQEAQTLRVKRHPD
VEQSYREQLRILGFRIATRQSKALPESAGELYEMVNDSAWLTFTLNDLPK
LRTQGWELLVDDEFGFDLTAVDDWYATVEQTPERDWFDLELGIIVNGERL
SLLPILLNLMRSHTEILNPERLARRRDDELILVNIPQRNSEHGPLQVALP
LGRLKPVLATLGEFYLQEPGETTLRLSKADATRLNSLEGIPLLWEGGEQI
RSFAQRLRDIRDYSAKAPKGLNATLRPYQLEGLSWMQSLRQLEVGGILAD
DMGLGKTLQTLAHILSEKNAGRLDRPCMVVMPTSLIPNWLDEAAHFTPQL
KVVALYGASRKKHFEHLADYDLILTTYALLPKDVERLAQQPLHVLVLDEA
QYIKNPNSKAAQAARELNARQRLCLSGTPLENHLGELWSLFHFLLPGWLG
DLKSFNADYRVPIEKRASEVRLQHLNGRIKPFLLRRTKEQVATELPPKTE
IIHWVELNEAQRDVYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLR
QVCCDLRLVNDATLPARGSTSGKLDSLMEMLEELFEEGRRILLFSQFTSM
LSLIEDELKKRNVAYALLTGQTRDRRTPVKEFQSGKRQIFLISLKAGGVG
LNLTEADTVIHYDPWWNPATENQATDRAYRIGQEKPVFVYKMIARGTVEE
KIQLLQREKSDLAAGVLDGRKAGDWKLQSDDIEALFAPLPDKFEKR
>Pfl_2951 ISPsy6, transposase
MRAHPEMMALQRSIVEHSFGNLKQWLFGNGRFLLRQLKASELK
>Pfl_4438 Exonuclease
MTSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDI
LPHPAACAITGITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRF
DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPTD
DEGKVTLKLERLTAANNIDHGNAHEALSDVRATIALARLIREKQPKLYDW
LFQLRSKQKVMDQIRLLQPMVHISGRFSAARSYVGVVLPLAWHPRNKNAL
IVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKCPV
VAPLSVLRADDQQRLGLDMALYQARALRLSDAQQVWKDKVSAIYASEDFT
SNEDPEQQLYDGFIGDRDRRLCEQVRATDPGQLAREQWPFDDERLPELLF
RYRARNFPDTLNFEEQERWRIFCRQRLSAPEWGAPNTLQSFAEAMEQWLL
SAAPMQAEVLVEWQNYVQALRKRLDL
>Pfl_0056 DNA polymerase A
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQY
PDSPFAVVFDAKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALG
FPLLCVEGVEADDVIGTLARSSAAADRPVIISTGDKDMAQLVDGHITLVN
TMSGSSMDVDGVKEKFGVAPEQIIDYLALMGDSSDNIPGVPGIGPKTASG
LLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEMAFLSYQLATI
KVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLNDLDRDAKRQELSA
AAEPVPAGDLFSAPAEEEAPAAPAEAAYETILDQARFDVWLEKLKNAKLF
AFDTETTGIDAQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVL
RALKPILEDPNKLKVGQHAKFDMNILANCAIGGDQNEGITVRGIAFDTML
ESYVLNSTATRHDMDSLAQKYLDHTTVSFQDIAGKGAKQLTFDQIALEQA
GPYAAEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIERQG
AFVDAELLGIQSIELGNKMIALEREAFEIAGEEFNLGSPKQLGVILYEKL
GLPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDR
LPEQINPRTGRIHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAF
VAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFK
VELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDTYFA
RYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAERTA
INAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLV
DQVREEIRVHMSEAAKLDVPLLVEVGVGNNWDEAH
>Pfl_1067 conserved hypothetical protein
MELKTMKTQTSFSHLRGLKLAALAIGTSFVLAGCAGNPPTEQYAVTQSAV
NSAVSAGGTEFAAVEMKQAQDKLKQAEIAMHDKKYDEARRLSEQAEWDAR
VAERKAQAAKAELAVKDSQKGVQELRQESQRPVQ
>Pfl_1830 conserved hypothetical protein
MSQYLLSFARQNLEGRTDAYLVLLWCMYQANQSKGRYSDHIKSHITTASD
QLLGRNYQRVAARFKKVLDKRPELDRIPPSGLGALDYLRVKNFRGFGEFG
ADDKGTFIRFSKLKNIFYAPNGGGKSSLCEAIEICTTGDIKEAARRKTKV
KQYIARGETKPQLALLGTNKLKITPSISWSSCFIDRNRLQEFSLLGSKDT
GSGESDVLATLFGLEELQEVISRFVRPESFTLKTFMRADQAEALLNLERA
RTELGQQRRKHRADLQVAISETCQLLGLRSDQDFEIRPKVQRLRKKIDMH
IRGAERLRAAKAPVVIPVKRVARTSAIAKRLLNRRTQIETLFLQRASEVN
YRAVFEALEAMEQQSEQTCPACLTPLDQVTVNPFERARDQIKALGALEAL
KQSKLRNDAQVVLWASRIATGISSVKGNTYADVPCSLAMDALEAVLAEFH
TATDRSTVAASVLNAFIALCADSTAQIEAYLLACERKRREVDQAEVQAAR
LNELIEHLKKVDESLKRQFDIKTRAETEFKNANNRMLALMGQRTVLLNDS
VDNSHFNQLLKDLEVEYRTLYGDLLDYKLELEKARITGIEAKAAEYYRAI
NNHDDDHEQIETLNFEKLSESYRIKINNVDGSLLDAFAVLSEGHLRALGL
SILLAMAEKNNFPLIVFDDVVNAIDTDHRSNIIDLFFNDTYLRRIQMVVT
THDRLFWERFCIIADRHPQCDQHANHVLSYTNKGIVVIDHAGGFQKKVHM
ALSVFDVRQALLYCRIWFESMVLEFCIENGVQVTANFNKSQLKKSMYLQV
SLEHTFKLVEPFIDYDLSYFNFIKNDLVNWGGQNQEHHAFDEESLNFVHS
KTSGEVSRIYDAIRFLECQLFMDKKKESGERYLAEVNEKVEKGRRKLAGL
ARAPEEVQKEHQAGLKALEKRALELTHELQFIERCVVSMADRERAGELPA
ELPPA
>Pfl_3866 Transcription-repair coupling factor
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQS
AERLEQELSFFAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPE
LEHGVLVVPITTALHRLAPTKFLLGSSLVLDVGQKLDVEQMRSRLEASGY
RYVDTVYEHGEFTVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDPENQ
RSIDKVDSVKLLPAKEFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSS
GITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVESGAGRE
RFPAQALPNLAIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLEL
LDRLKLRPKTVDSWPDFVASKDRLAITIAPLDEGLMLDDPALALVAESPL
FGQRVMQRRRREKRADANNDAVIKNLTELREGAPVVHIDHGVGRYLGLTI
LEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSE
TWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHG
GKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAQ
LAEGNIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSE
VDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTV
KEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARIGIGHGQMRER
ELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATN
DLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPL
GGGPEVNLRVPALIPEDYLPDVHARLILYKRIASATDEEGLKDLQVEMID
RFGLLPEPTKNLVRITALKLQAEQLGIKKVDGGPQGGRIEFAAQTPVDPM
TLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEALFERLIPKTA
>Pfl_0791 TatD-like deoxyribonuclease
MELIDSHTHLDFPDFDADRAALLSESRALGVRRMVVLGVYEGNWQRVWDL
VQSDADLYAAFGLHPVYLDQHRPEDLLALGDWLTRLKGHRQLCAVGEIGL
DYFIETLDRERQQVLFETQLQLAADFELPALIHVRRSHAAVIATLKRFKL
KRAGIIHAFAGSREEAREYIKLGFKLGLGGAPTWPQALRMHRVLADLPLD
SVVLETDSPDMAPAMYPGIRNTPAHLPAICASLATLMNISAQQLAAASTA
NSCEVFGW
>Pfl_2794 Transposase, IS4
MAYIQGESRSQTSLFPVSLEELIPEDHLVRVIDLYVAKLDLGQLGFEKAQ
PKASGRPAYDPADQLKLYLYGYFQRIRSSRRLEAECQRNIEVMWLINRLK
PDFKTIADFRKNNKVAFVTTCRAFVQFCRSVGLIAGDLVAIDGSKFQAVA
SSRRHLNLNQLKRQEEKLDKRIAQYLADLDAADKAEGEQVVDRTAIKAAL
AKLEAKQQDNRSCQALMKSMSLEQFNTHESDARMMRTPKGARVAYNVQTA
VDAEHCLILHHEVTQDGDDRKQLEPIAKAAKAELGQDTLTVTADMGYSNG
QQFQACEEASITVYVPPNRTSNPGGETLFERQDFTYDAEQDRYQCPAGQW
LTLKQRYKGDRIYQAAVSDCAGCALKAQCTTAQRRYVSRHAQEEAFERMA
QRMQLHPEMMERRRSIVEHPFGNLKQWLFGNGRFLLRQLEGTKAEMALAV
TAYNFKRAISVLGAKKMMQLMG
>Pfl_2983 ISPsy12, transposase OrfB
MERVLRSLKTEWIPTVGYMTAQEAHQDISHYLMHRCHWMRPINSTVGGRQ
LRPRKKFNVVSGIS
>Pfl_5148 DNA primase
MAGLIPQSFIDDLLNRTDIVDVVSSRVQLKKAGKNYTACCPFHKEKTPSF
SVSPDKQFYYCFGCGAGGNALGFLMDHDNLDFPQAVEDLAKAAGMEVPRD
EGGRSNKPRQPTDSPLYPLLTAAADFYRQALKSHPARKAAVDYLKGRGLT
GEIARDFGLGFAPPGWDNLLKHLSSDTLQQKAMIEAGLLIENAETGKRYD
RFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGL
YEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF
RVVPNVLFCFDGDQAGRNAAWRALEATLPSLQDGRRARFLFLPEGEDPDT
LIRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAP
LIDKVPGANLRILMRQRLTEITGLSSESVSQLAQSAPQEAPPAYDPGIDY
DAMPDYSDYHQSQAQDMYVPQQEWTPKKSGAGGKKWDKKPWDKNGKRGGD
RDQPRAPRVPAAVEPPTLAALRTLLHHPQLAEKVEDAGHFADENQTNAQL
LVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIDGDNLEQQ
FFDTITSLSARQRERNLEQLLRKARQSELSAEEKNQLRDLLSRNVSASNP
TSTGA
>Pfl_3330 DNA alkylation repair enzyme-like
MSATETAAPALKEIFNAERLQHIATEMSAVYPAFKAKAFLKHVNEGLADL
SVMQRMARVSESLHAVLPLDYADSLVILRELAPRLNSGFVSMCLPHYVAS
YGAHAFDTSMEALKYFTTFGSSEFAIRHFLRSDLERSLELMHDWTRNENH
HVRRLASEGSRPRLPWSFRLEPVQADPLLAAGILDRLKADESLYVRKSVA
NHLNDVTKEHPEWVLDTIEGWSLDNKHTAWIAKHALRSLIKQGNSRALTV
IGAGAKAEVELLDVKVEPAVVRLGDTITLSFTVRSLVPVEQRLVIDYAID
YVKANGGTSAKVFKLKTLELEGFGSAVVARRQVIKDFTTRKHYAGVHAVH
VVVNGERLGSTAVDIDF