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2024-05-06 23:20:43

Gene list

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COG category: Replication, recombination and repair
Organism: Pseudomonas fluorescens PfO-1, PfO-1

Number of genes found: 185

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas fluorescens PfO-1, PfO-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Pfl_0980 Excinuclease ABC, C subunit-likechromosome CDS1140311 303 + 0.590759
NA Pfl_2926 Phage integrasechromosome CDS3371554 939 - 0.636848
NA Pfl_0003 DNA replication and repair protein RecFchromosome CDS3246 1104 + 0.591486
NA Pfl_0791 TatD-like deoxyribonucleasechromosome CDS928720 777 - 0.625483
NA Pfl_1346 ISPsy11, transposase OrfAchromosome CDS1521617 402 + 0.502488
NA Pfl_1225 Helicase c2chromosome CDS1394936 2145 + 0.634965
NA Pfl_0689 Exodeoxyribonuclease V, beta subunitchromosome CDS811849 3690 + 0.610569
NA Pfl_5539 DNA repair protein RadCchromosome CDS6208379 675 - 0.561481
NA Pfl_4409 Crossover junction endodeoxyribonuclease RuvCchromosome CDS4968498 528 - 0.602273
NA Pfl_1025 Tyrosine recombinase XerDchromosome CDS1188840 897 + 0.616499
NA Pfl_2776 hypothetical proteinchromosome CDS3201700 432 - 0.576389
NA Pfl_1116 DNA polymerase III, alpha subunitchromosome CDS1289769 3522 + 0.607325
NA Pfl_5051 Excinuclease ABC, A subunitchromosome CDS5686728 2835 + 0.6194
NA Pfl_1801 NAD-dependent DNA ligasechromosome CDS2010582 2358 + 0.627226
NA Pfl_1175 RecA DNA recombination proteinchromosome CDS1346272 1059 + 0.603399
NA Pfl_4149 TatD-like deoxyribonucleasechromosome CDS4687562 786 - 0.619593
NA Pfl_4626 hypothetical proteinchromosome CDS5227031 642 + 0.422118
NA Pfl_5049 Single-strand binding proteinchromosome CDS5684611 519 - 0.606936
NA Pfl_4935 ATP-dependent helicase HrpBchromosome CDS5560498 2520 - 0.655159
NA Pfl_2951 ISPsy6, transposasechromosome CDS3391633 132 - 0.545455
NA Pfl_4438 Exonucleasechromosome CDS4997582 1431 - 0.589797
NA Pfl_3066 Excinuclease ABC, C subunitchromosome CDS3507583 1824 - 0.592105
NA Pfl_3959 hypothetical proteinchromosome CDS4486590 309 + 0.530744
NA Pfl_2944 DNA topoisomerase, type I, putativechromosome CDS3385914 1038 + 0.614644
NA Pfl_3573 conserved hypothetical proteinchromosome CDS4041730 330 + 0.606061
NA Pfl_5340 conserved hypothetical proteinchromosome CDS6000676 609 + 0.643678
NA Pfl_0971 DEAD/DEAH box helicase-likechromosome CDS1130745 1479 - 0.631508
NA Pfl_3330 DNA alkylation repair enzyme-likechromosome CDS3807962 1104 + 0.580616
NA Pfl_3364 DNA topoisomerase IIIchromosome CDS3840775 1944 + 0.649177
NA Pfl_1830 conserved hypothetical proteinchromosome CDS2046259 2868 + 0.519526
NA Pfl_5519 ATP-dependent DNA helicase RepAchromosome CDS6187561 2010 + 0.60597
NA Pfl_5005 Exonuclease VII, small subunitchromosome CDS5641715 243 + 0.621399
NA Pfl_0320 A/G-specific adenine glycosylase MutYchromosome CDS364048 1068 - 0.652622
NA Pfl_2672 UvrD/REP helicasechromosome CDS3071024 2475 + 0.598788
NA Pfl_1035 RecJ exonucleasechromosome CDS1199011 1710 + 0.628655
NA Pfl_3001 DNA topoisomerase IIIchromosome CDS3442472 1968 + 0.586382
NA Pfl_2937 2OG-Fe(II) oxygenasechromosome CDS3379062 663 + 0.622926
NA Pfl_5248 DEAD/DEAH box helicase-likechromosome CDS5908288 1437 + 0.626305
NA Pfl_0503 Gram negative topoisomerase IV, subunit Achromosome CDS581842 2265 + 0.612804
NA Pfl_2938 Transcriptional Regulator, AraC familychromosome CDS3379813 1074 + 0.650838
NA Pfl_4231 conserved hypothetical proteinchromosome CDS4772865 675 - 0.595556
NA Pfl_4736 DNA photolyase, FAD-bindingchromosome CDS5341280 1467 + 0.61895
NA Pfl_1476 conserved hypothetical proteinchromosome CDS1657662 591 - 0.610829
NA Pfl_0033 Transposase, IS4chromosome CDS35160 1419 + 0.55673
NA Pfl_4151 DNA polymerase III delta prime subunitchromosome CDS4688762 984 - 0.630081
NA Pfl_2794 Transposase, IS4chromosome CDS3218775 1419 - 0.55673
NA Pfl_2886 Predicted transmembrane transcriptional regulator (anti-Sigma-factor)chromosome CDS3326263 759 + 0.625823
NA Pfl_5378 NUDIX hydrolasechromosome CDS6041613 480 - 0.5875
NA Pfl_0004 DNA topoisomerase II:ATP-binding region, ATPase-likechromosome CDS4355 2418 + 0.583954
NA Pfl_3217 exonuclease SbcCchromosome CDS3696858 3642 + 0.633718
NA Pfl_1803 hypothetical proteinchromosome CDS2014556 2016 + 0.589286
NA Pfl_0521 DNA mismatch repair proteinchromosome CDS603077 1908 + 0.640985
NA Pfl_5644 UvrD/REP helicasechromosome CDS6325758 2184 + 0.620879
NA Pfl_5356 hypothetical proteinchromosome CDS6015161 957 + 0.61442
NA Pfl_4685 Protein of unknown function UPF0102chromosome CDS5289841 363 + 0.570248
NA Pfl_0495 Nucleoside diphosphate pyrophosphatasechromosome CDS574356 618 + 0.601942
NA Pfl_1420 ATP-dependent helicase HrpAchromosome CDS1592406 3912 + 0.632669
NA Pfl_1347 Integrase, catalytic regionchromosome CDS1522042 798 + 0.541353
NA Pfl_2187 DNA polymerase 3, epsilon subunitchromosome CDS2470638 759 + 0.620553
NA Pfl_2983 ISPsy12, transposase OrfBchromosome CDS3425803 195 + 0.54359
NA Pfl_3584 AAA ATPase, central regionchromosome CDS4049464 1326 - 0.615385
NA Pfl_4021 TatD-like deoxyribonucleasechromosome CDS4545899 807 + 0.625775
NA Pfl_2158 Methylated-DNA-(protein)-cysteineS-methyltransfe rasechromosome CDS2440640 1083 - 0.628809
NA Pfl_0068 Integrase, catalytic regionchromosome CDS74089 798 - 0.541353
NA Pfl_1067 conserved hypothetical proteinchromosome CDS1235721 405 - 0.614815
NA Pfl_4623 hypothetical proteinchromosome CDS5222159 561 + 0.579323
NA Pfl_2982 transposase, OrfBchromosome CDS3425383 369 + 0.536585
NA Pfl_3405 conserved hypothetical proteinchromosome CDS3885017 447 - 0.606264
NA Pfl_5351 DNA-formamidopyrimidine glycosylasechromosome CDS6009905 813 - 0.649446
NA Pfl_1915 Deoxyribonuclease Ichromosome CDS2187831 690 - 0.585507
NA Pfl_0002 DNA-directed DNA polymerasechromosome CDS2128 1104 + 0.603261
NA Pfl_3987 DEAD/DEAH box helicase-likechromosome CDS4515795 1674 - 0.616487
NA Pfl_0614 Helix-turn-helix, Fis-typechromosome CDS722768 321 - 0.566978
NA Pfl_1937 Integration host factor, alpha subunitchromosome CDS2207111 303 + 0.551155
NA Pfl_0740 hypothetical proteinchromosome CDS867938 1983 + 0.499244
NA Pfl_4975 Methylpurine-DNA glycosylasechromosome CDS5603182 696 + 0.622126
NA Pfl_1199 Methylated-DNA-(protein)-cysteineS-methyltransfe rasechromosome CDS1371859 342 - 0.672515
NA Pfl_3676 Serine/Threonine protein kinasechromosome CDS4159007 1314 + 0.636225
NA Pfl_3151 conserved hypothetical proteinchromosome CDS3619478 618 - 0.716828
NA Pfl_2690 DEAD_2chromosome CDS3097497 2319 + 0.623113
NA Pfl_5283 DEAD/DEAH box helicase-likechromosome CDS5944390 1869 + 0.651685
NA Pfl_0001 chromosomal replication initiator protein, DnaAchromosome CDS565 1524 + 0.591207
NA Pfl_3866 Transcription-repair coupling factorchromosome CDS4368861 3450 + 0.62087
NA Pfl_2032 Integrase, catalytic regionchromosome CDS2316966 798 + 0.5401
NA Pfl_5545 Exodeoxyribonuclease III xthchromosome CDS6214225 780 + 0.59359
NA Pfl_3694 Histone-like DNA-binding proteinchromosome CDS4181391 273 - 0.553114
NA Pfl_0761 DNA repair protein RecNchromosome CDS892336 1674 - 0.609916
NA Pfl_2496 conserved hypothetical proteinchromosome CDS2854516 603 + 0.606965
NA Pfl_3000 Single-strand binding protein/Primosomal replication protein nchromosome CDS3441791 441 + 0.585034
NA Pfl_4920 DEAD/DEAH box helicase-likechromosome CDS5543424 1341 - 0.623415
NA Pfl_0988 DNA polymerase III chi subunit, HolCchromosome CDS1148810 429 - 0.594406
NA Pfl_0011 DNA-3-methyladenine glycosylase Ichromosome CDS13907 558 + 0.596774
NA Pfl_5186 Exonucleasechromosome CDS5834079 708 + 0.638418
NA Pfl_1991 curli fiber protein CsgE, putativechromosome CDS2270849 393 + 0.620865
NA Pfl_1333 Zeta toxinchromosome CDS1505301 759 - 0.504611
NA Pfl_1443 lipoprotein, putativechromosome CDS1616671 870 - 0.6
NA Pfl_1940 DNA helicase-related proteinchromosome CDS2209453 5412 + 0.553954
NA Pfl_3876 DNA topoisomerase Ichromosome CDS4380704 2631 - 0.605473
NA Pfl_0499 Gram negative topoisomerase IV, subunit Bchromosome CDS577085 1908 + 0.631551
NA Pfl_1349 Uracil-DNA glycosylasechromosome CDS1524128 696 + 0.604885
NA Pfl_5312 Holliday junction resolvase YqgFchromosome CDS5977462 438 + 0.625571
NA Pfl_1636 DnaA family proteinchromosome CDS1827637 705 + 0.585816
NA Pfl_1115 Ribonuclease Hchromosome CDS1289051 642 + 0.616822
NA Pfl_2131 Integrase, catalytic regionchromosome CDS2416137 798 + 0.5401
NA Pfl_4270 Arc-like DNA bindingchromosome CDS4817799 327 + 0.577982
NA Pfl_3005 DNA repair protein RadCchromosome CDS3446366 495 + 0.559596
NA Pfl_0470 Lipopolysaccharide kinasechromosome CDS544195 753 + 0.622842
NA Pfl_5600 Histone-like DNA-binding proteinchromosome CDS6273921 276 - 0.583333
NA Pfl_3149 DNA polymerase III, alpha subunitchromosome CDS3614981 3078 - 0.644899
NA Pfl_3216 Exonuclease SbcDchromosome CDS3695617 1245 + 0.636145
NA Pfl_1668 Putative exonuclease, RdgCchromosome CDS1859536 921 - 0.603692
NA Pfl_0069 ISPsy11, transposase OrfAchromosome CDS74910 402 - 0.502488
NA Pfl_3480 Recombinasechromosome CDS3962384 1599 + 0.498437
NA Pfl_0688 Exodeoxyribonuclease V, RecC subunitchromosome CDS808400 3453 + 0.584709
NA Pfl_1195 DNA-directed DNA polymerasechromosome CDS1366344 1062 + 0.60452
NA Pfl_0284 NUDIX hydrolasechromosome CDS330594 567 + 0.624339
NA Pfl_0083 Radical SAMchromosome CDS87830 1059 - 0.631728
NA Pfl_2881 NUDIX hydrolasechromosome CDS3322521 831 - 0.618532
NA Pfl_0480 O-antigen polymerasechromosome CDS555573 1863 - 0.604938
NA Pfl_1211 ATP dependent DNA ligasechromosome CDS1382705 1689 - 0.640616
NA Pfl_4959 DNA polymerase III, delta subunitchromosome CDS5587653 1038 + 0.648362
NA Pfl_0400 Primosomal protein nchromosome CDS453938 2235 - 0.661745
NA Pfl_4408 DNA recombination protein, RuvAchromosome CDS4967775 609 - 0.591133
NA Pfl_1010 NUDIX hydrolasechromosome CDS1175748 600 + 0.606667
NA Pfl_3030 hypothetical proteinchromosome CDS3467704 594 - 0.537037
NA Pfl_2840 Phage integrasechromosome CDS3276556 891 - 0.570146
NA Pfl_2097 ATP dependent DNA ligasechromosome CDS2382341 2547 + 0.617589
NA Pfl_4041 Competence protein ComEA helix-hairpin-helix regionchromosome CDS4566853 336 - 0.565476
NA Pfl_3150 conserved hypothetical proteinchromosome CDS3618055 1416 - 0.668785
NA Pfl_1805 AAA ATPase, central regionchromosome CDS2017476 2091 + 0.653754
NA Pfl_3734 DNA polymerase B regionchromosome CDS4218772 2364 - 0.631557
NA Pfl_2186 Ribonuclease Hchromosome CDS2470094 462 + 0.606061
NA Pfl_3064 Phage integrasechromosome CDS3504962 1317 - 0.538345
NA Pfl_0747 Phage integrasechromosome CDS877388 1257 - 0.564837
NA Pfl_1134 MutS 1 proteinchromosome CDS1310403 2583 - 0.625242
NA Pfl_0690 Exodeoxyribonuclease V, alpha subunitchromosome CDS815535 2109 + 0.623518
NA Pfl_0538 DnaB helicasechromosome CDS623970 1398 + 0.611588
NA Pfl_0746 Phage integrasechromosome CDS875977 981 + 0.590214
NA Pfl_4437 transcriptional regulator, putativechromosome CDS4997103 378 + 0.526455
NA Pfl_0019 SMF proteinchromosome CDS21282 1101 + 0.653043
NA Pfl_4078 DNA gyrase, subunit Achromosome CDS4607685 2664 - 0.614489
NA Pfl_5575 Serine/Threonine protein kinasechromosome CDS6244619 1002 - 0.650699
NA Pfl_5148 DNA primasechromosome CDS5783794 1968 + 0.612805
NA Pfl_3567 Nucleoside diphosphate pyrophosphatasechromosome CDS4037521 591 - 0.592217
NA Pfl_4513 Endonuclease III/Nthchromosome CDS5088734 639 + 0.56651
NA Pfl_1468 ATP-dependent DNA helicase RecQchromosome CDS1647794 2130 + 0.648357
NA Pfl_0275 ATP-dependent DNA helicase RecQchromosome CDS320449 1929 + 0.604458
NA Pfl_3059 Integrase, catalytic regionchromosome CDS3500300 1029 + 0.556851
NA Pfl_4060 Integration host factor, beta subunitchromosome CDS4584717 297 - 0.555556
NA Pfl_3595 NUDIX hydrolasechromosome CDS4064305 447 + 0.606264
NA Pfl_0984 Histone-like DNA-binding proteinchromosome CDS1143800 282 + 0.567376
NA Pfl_4924 Exonucleasechromosome CDS5549495 612 - 0.616013
NA Pfl_3868 SNF2-likechromosome CDS4372899 2691 + 0.607581
NA Pfl_3816 Transposase IS116/IS110/IS902chromosome CDS4316592 1023 - 0.519062
NA Pfl_1255 SNF2-likechromosome CDS1428182 2847 - 0.648051
NA Pfl_5501 Tyrosine recombinase XerCchromosome CDS6167295 900 + 0.642222
NA Pfl_2765 Integrase, catalytic regionchromosome CDS3190613 1161 - 0.544358
NA Pfl_2130 ISPsy11, transposase OrfAchromosome CDS2415712 402 + 0.502488
NA Pfl_0056 DNA polymerase Achromosome CDS61047 2808 - 0.616453
NA Pfl_3500 Resolvase-likechromosome CDS3981116 747 + 0.531459
NA Pfl_4592 Exonuclease VII, large subunitchromosome CDS5191474 1380 + 0.653623
NA Pfl_1782 Protein serine/threonine phosphataseschromosome CDS1982483 1671 - 0.634351
NA Pfl_2156 DNA-3-methyladenine glycosylase IIchromosome CDS2439190 627 - 0.634769
NA Pfl_3060 hypothetical proteinchromosome CDS3501733 897 - 0.573021
NA Pfl_2031 ISPsy11, transposase OrfAchromosome CDS2316541 402 + 0.502488
NA Pfl_0469 lipopolysaccharide core biosynthesis protein, putativechromosome CDS543464 735 + 0.609524
NA Pfl_0996 Recombination protein O, RecOchromosome CDS1158040 690 + 0.643478
NA Pfl_0471 conserved hypothetical proteinchromosome CDS544947 1452 + 0.629477
NA Pfl_0468 Lipopolysaccharide kinasechromosome CDS542658 807 + 0.623296
NA Pfl_4549 NUDIX hydrolasechromosome CDS5129048 435 - 0.634483
NA Pfl_5270 NAD-dependent DNA ligasechromosome CDS5931067 1677 + 0.648778
NA Pfl_3139 Excinuclease ABC, A subunitchromosome CDS3601777 2634 - 0.646545
NA Pfl_3649 AP endonuclease, family 1chromosome CDS4129620 813 + 0.595326
NA Pfl_0625 NUDIX hydrolasechromosome CDS736064 558 + 0.620072
NA Pfl_4520 Ribonuclease Tchromosome CDS5094981 675 + 0.61037
NA Pfl_0743 hypothetical proteinchromosome CDS870929 1728 - 0.413194
NA Pfl_1868 Exodeoxyribonuclease III xthchromosome CDS2131194 795 + 0.608805
NA Pfl_5724 Tn7-like transposition protein Bchromosome CDS6414895 2172 - 0.461326
NA Pfl_3033 probable DNA primasechromosome CDS3469935 963 + 0.564901
NA Pfl_4407 Holliday junction DNA helicase RuvBchromosome CDS4966713 1062 - 0.60452
NA Pfl_5559 ATP-dependent DNA helicase RecGchromosome CDS6226121 2076 + 0.660405
NA Pfl_1875 Excinuclease ABC, B subunitchromosome CDS2137616 2016 + 0.620536
NA Pfl_1808 RecR proteinchromosome CDS2021222 603 + 0.650083
NA Pfl_3566 Methylated-DNA-(protein)-cysteineS-methyltransfe rasechromosome CDS4037009 516 + 0.608527
NA Pfl_1437 DEAD/DEAH box helicase-likechromosome CDS1612101 1341 + 0.615958