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2024-05-14 03:12:30

Gene list

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COG category: Replication, recombination and repair
Organism: Escherichia coli W3110, K-12

Number of genes found: 251

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Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
ada fused DNA-binding transcriptional dual regulator and O6-methylguanine-DNA methyltransferaseRecName: Full=Bifunctional transcriptional activator/DNA repair enzyme Ada; AltName: Full=Regulatory protein of adaptive response; Includes: RecName: Full=Methylphosphotriester-DNA--protein-cysteine S-methyltransferase; EC=2.1.1.n11; AltName: Full=Methylphosphotriester-DNA methyltransferase; Includes: RecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=O6-methylguanine-DNA alkyltransferase; chromosome CDS2312675 1065 - 0.569014
alkA 3-methyl-adenine DNA glycosylase IIRecName: Full=DNA-3-methyladenine glycosylase 2; EC=3.2.2.21; AltName: Full=3-methyladenine-DNA glycosylase II, inducible; Short=TAG II; AltName: Full=DNA-3-methyladenine glycosidase II; AltName: Full=DNA-3-methyladenine glycosylase II; chromosome CDS2148829 849 - 0.555948
alkB oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesionsRecName: Full=Alpha-ketoglutarate-dependent dioxygenase AlkB; EC=1.14.11.33; AltName: Full=Alkylated DNA repair protein AlkB; AltName: Full=DNA oxidative demethylase AlkB; chromosome CDS2312025 651 - 0.526882
dam DNA adenine methylaseRecName: Full=DNA adenine methylase; EC=2.1.1.72; AltName: Full=DNA adenine methyltransferase; AltName: Full=Deoxyadenosyl-methyltransferase; AltName: Full=M.EcoDam; chromosome CDS4124503 837 + 0.495818
dbpA ATP-dependent RNA helicase specific for 23S rRNARecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS1411225 1374 + 0.519651
dcm DNA cytosine methylaseRecName: Full=DNA-cytosine methyltransferase; EC=2.1.1.37; AltName: Full=M.EcoDcm; chromosome CDS2033036 1419 - 0.521494
deaD ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; AltName: Full=Translation factor W2; chromosome CDS3305826 1890 - 0.555556
dinB DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS250898 1056 + 0.541667
dinG ATP-dependent DNA helicaseRecName: Full=Probable ATP-dependent helicase DinG; EC=3.6.4.12; AltName: Full=DNA-damage-inducible protein G; chromosome CDS833492 2151 + 0.540679
dinJ predicted antitoxin of YafQ-DinJ toxin-antitoxin systemRecName: Full=Antitoxin DinJ; chromosome CDS246242 261 - 0.467433
dnaA chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulatorRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS3756686 1404 + 0.540598
dnaB replicative DNA helicaseRecName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome CDS4267904 1416 + 0.538136
dnaC DNA biosynthesis proteinRecName: Full=DNA replication protein DnaC; chromosome CDS4604918 738 - 0.50542
dnaE DNA polymerase III alpha subunitRecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS205126 3483 + 0.549526
dnaG DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS3209763 1746 + 0.52291
dnaN DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; AltName: Full=Beta sliding clamp; Short=Beta clamp; chromosome CDS3758094 1101 + 0.542234
dnaQ DNA polymerase III epsilon subunitRecName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7; chromosome CDS236067 732 + 0.501366
dnaX DNA polymerase III/DNA elongation factor III, tau and gamma subunitsRecName: Full=DNA polymerase III subunit tau; EC=2.7.7.7; AltName: Full=DNA polymerase III subunit gamma; chromosome CDS491316 1932 + 0.576605
endA DNA-specific endonuclease IRecName: Full=Endonuclease-1; EC=3.1.21.1; AltName: Full=Endonuclease I; Short=Endo I; Flags: Precursor; chromosome CDS3089003 708 + 0.548023
exo exonuclease IX (5'-3' exonuclease)RecName: Full=Flap endonuclease Xni; Short=FEN; EC=3.1.-.-; AltName: Full=Exonuclease IX; Short=ExoIX; chromosome CDS2929621 846 + 0.527187
exoX DNA exonuclease XRecName: Full=Exodeoxyribonuclease 10; EC=3.1.11.-; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X; chromosome CDS1927834 663 + 0.518854
fimB tyrosine recombinase/inversion of on/off regulator of fimARecName: Full=Type 1 fimbriae regulatory protein FimB; chromosome CDS4545637 603 + 0.434494
fimE tyrosine recombinase/inversion of on/off regulator of fimARecName: Full=Type 1 fimbriae regulatory protein FimE; chromosome CDS4546717 597 + 0.469012
fis global DNA-binding transcriptional dual regulatorRecName: Full=DNA-binding protein Fis; AltName: Full=Factor-for-inversion stimulation protein; AltName: Full=Hin recombinational enhancer-binding protein; chromosome CDS3411126 297 + 0.47138
gyrA DNA gyrase (type II topoisomerase), subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS2341463 2628 - 0.539954
gyrB DNA gyrase, subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS3760296 2415 + 0.549896
hda ATPase regulatory factor involved in DnaA inactivation chromosome CDS2616731 747 - 0.531459
helD DNA helicase IVRecName: Full=Helicase IV; EC=3.6.4.12; AltName: Full=75 kDa helicase; chromosome CDS1024893 2055 + 0.530414
hepA RNA polymerase-associated helicase proteinRecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS60358 2907 - 0.54902
holA DNA polymerase III, delta subunitRecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS670996 1032 - 0.523256
holB DNA polymerase III, delta prime subunitRecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS1157339 1005 + 0.540299
holC DNA polymerase III, chi subunitRecName: Full=DNA polymerase III subunit chi; EC=2.7.7.7; chromosome CDS4488517 444 - 0.540541
holD DNA polymerase III, psi subunitRecName: Full=DNA polymerase III subunit psi; EC=2.7.7.7; chromosome CDS4612483 414 + 0.577295
hrpA ATP-dependent helicaseRecName: Full=ATP-dependent RNA helicase HrpA; EC=3.6.4.13; chromosome CDS1484832 3846 + 0.535101
hrpB predicted ATP-dependent helicaseRecName: Full=ATP-dependent RNA helicase HrpB; EC=3.6.4.13; chromosome CDS162105 2430 + 0.565844
hupA HU, DNA-binding transcriptional regulator, alpha subunitRecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2; chromosome CDS3436128 273 - 0.483516
hupB HU, DNA-binding transcriptional regulator, beta subunitRecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1; chromosome CDS460675 273 + 0.490842
ihfA integration host factor (IHF), DNA-binding protein, alpha subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1796967 300 - 0.5
ihfB integration host factor (IHF), DNA-binding protein, beta subunitRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS964250 285 + 0.491228
insA IS1 repressor protein InsARecName: Full=Insertion element IS1 1 protein InsA; AltName: Full=IS1a; chromosome CDS20233 276 - 0.528986
insA IS1 repressor protein InsARecName: Full=Insertion element IS1 3 protein InsA; AltName: Full=IS1c; chromosome CDS290295 276 - 0.532609
insA IS1 repressor protein InsARecName: Full=Insertion element IS1 4 protein InsA; AltName: Full=IS1d; chromosome CDS1050255 276 + 0.528986
insA IS1 repressor protein InsARecName: Full=Insertion element IS1 6 protein InsA; AltName: Full=IS1e; chromosome CDS4056657 276 - 0.528986
insA IS1 repressor protein InsARecName: Full=Insertion element IS1 7 protein InsA; AltName: Full=IS1f; chromosome CDS4523207 276 + 0.528986
insA IS1 repressor protein InsARecName: Full=Insertion element IS1 2 protein InsA; AltName: Full=IS1b; chromosome CDS278824 276 - 0.532609
insA IS1 element proteinRecName: Full=Insertion element IS1 8 protein InsA; chromosome CDS2411895 276 - 0.528986
insB IS1 transposase InsAB'RecName: Full=Insertion element IS1 3 protein InsB; AltName: Full=IS1c; chromosome CDS289873 504 - 0.551587
insB IS1 transposase InsAB'RecName: Full=Insertion element IS1 1 protein InsB; AltName: Full=IS1a; chromosome CDS19811 504 - 0.545635
insB IS1 element proteinRecName: Full=Insertion element IS1 8 protein InsB; chromosome CDS2411473 504 - 0.545635
insB IS1 transposase InsAB'RecName: Full=Insertion element IS1 4 protein InsB; AltName: Full=IS1d; chromosome CDS1050449 504 + 0.547619
insB IS1 transposase InsAB'RecName: Full=Insertion element IS1 2 protein InsB; AltName: Full=IS1b; chromosome CDS278402 504 - 0.551587
insB IS1 transposase InsAB'RecName: Full=Insertion element IS1 6 protein InsB; AltName: Full=IS1e; chromosome CDS4056235 504 - 0.545635
insC IS2 element proteinRecName: Full=Transposase InsC for insertion element IS2-11; chromosome CDS3743807 366 - 0.530055
insC IS2 insertion element repressor InsARecName: Full=Transposase InsC for insertion element IS2I; chromosome CDS3184798 411 + 0.508516
insC IS2 insertion element repressor InsARecName: Full=Transposase InsC for insertion element IS2H; chromosome CDS2995891 411 - 0.508516
insC IS2 element proteinRecName: Full=Transposase InsC for insertion element IS2-10; chromosome CDS2321668 366 - 0.530055
insC IS2 element proteinRecName: Full=Transposase InsC for insertion element IS2-9; chromosome CDS1301130 366 + 0.530055
insC IS2 insertion element repressor InsARecName: Full=Transposase InsC for insertion element IS2F; chromosome CDS2071952 411 - 0.508516
insC IS2 element proteinRecName: Full=Transposase InsC for insertion element IS2-8; chromosome CDS1106496 366 - 0.530055
insC IS2 insertion element repressor InsARecName: Full=Transposase InsC for insertion element IS2A; chromosome CDS380530 411 + 0.508516
insC IS2 insertion element repressor InsARecName: Full=Transposase InsC for insertion element IS2K; chromosome CDS4502907 411 + 0.508516
insC IS2 insertion element repressor InsARecName: Full=Transposase InsC for insertion element IS2D; chromosome CDS1470498 411 - 0.508516
insD predicted transposaseRecName: Full=Putative transposase InsD for insertion element IS2E; chromosome CDS1652595 657 + 0.543379
insD IS2 insertion element transposase InsAB'RecName: Full=Transposase InsD for insertion element IS2I; chromosome CDS3185166 906 + 0.550773
insD IS2 element proteinRecName: Full=Transposase InsD for insertion element IS2-9; chromosome CDS1105633 924 - 0.547619
insD IS2 insertion element transposase InsAB'RecName: Full=Transposase InsD for insertion element IS2D; chromosome CDS1469635 906 - 0.550773
insD IS2 element proteinRecName: Full=Transposase InsD for insertion element IS2-12; chromosome CDS3742944 924 - 0.547619
insD IS2 insertion element transposase InsAB'RecName: Full=Transposase InsD for insertion element IS2F; chromosome CDS2071089 906 - 0.550773
insD IS2 insertion element transposase InsAB'RecName: Full=Transposase InsD for insertion element IS2K; chromosome CDS4503275 906 + 0.550773
insD IS2 insertion element transposase InsAB'RecName: Full=Transposase InsD for insertion element IS2A; chromosome CDS380898 906 + 0.550773
insD IS2 element protein chromosome CDS1301435 924 + 0.547619
insD IS2 insertion element transposase InsAB'RecName: Full=Transposase InsD for insertion element IS2H; chromosome CDS2995028 906 - 0.550773
insD IS2 element proteinRecName: Full=Transposase InsD for insertion element IS2-11; chromosome CDS2320805 924 - 0.547619
insE IS3 element proteinRecName: Full=Transposase InsE for insertion sequence IS3A; chromosome CDS314506 309 + 0.501618
insE IS3 element proteinRecName: Full=Transposase InsE for insertion sequence IS3B; chromosome CDS391826 309 - 0.501618
insE IS3 element protein InsERecName: Full=Transposase InsE for insertion sequence IS3E; chromosome CDS2172364 309 + 0.501618
insE IS3 element proteinRecName: Full=Transposase InsE for insertion sequence IS3D; chromosome CDS1095560 309 - 0.501618
insE IS3 element protein InsERecName: Full=Transposase InsE for insertion sequence IS3C; chromosome CDS566056 309 + 0.501618
insF IS3 element protein InsFRecName: Full=Transposase InsF for insertion sequence IS3C; chromosome CDS566361 867 + 0.551326
insF IS3 element protein InsFRecName: Full=Transposase InsF for insertion sequence IS3E; chromosome CDS2172669 867 + 0.551326
insF IS3 element protein InsFRecName: Full=Transposase InsF for insertion sequence IS3A; chromosome CDS314811 867 + 0.551326
insF IS3 element protein InsFRecName: Full=Transposase InsF for insertion sequence IS3B; chromosome CDS390963 867 - 0.551326
insF IS3 element protein InsFRecName: Full=Transposase InsF for insertion sequence IS3D; chromosome CDS1094697 867 - 0.551326
insG IS4 predicted transposaseRecName: Full=Transposase InsG for insertion sequence element IS4; chromosome CDS4506783 1329 - 0.541761
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5A; chromosome CDS273325 1017 - 0.546706
insH IS5 element proteinRecName: Full=Transposase InsH for insertion sequence element IS5-18; chromosome CDS4310431 981 + 0.550459
insH IS5 element proteinRecName: Full=Transposase InsH for insertion sequence element IS5-17; chromosome CDS3750659 981 + 0.550459
insH IS5 element proteinRecName: Full=Transposase InsH for insertion sequence element IS5-13; chromosome CDS654281 981 + 0.550459
insH IS5 element proteinRecName: Full=Transposase InsH for insertion sequence element IS5-12; chromosome CDS1980355 1017 - 0.546706
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5H; chromosome CDS2068442 1017 - 0.546706
insH IS5 element proteinRecName: Full=Transposase InsH for insertion sequence element IS5-15; chromosome CDS3261202 981 + 0.550459
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5T; chromosome CDS3987217 1017 + 0.546706
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5I; chromosome CDS2104032 1017 - 0.546706
insH IS5 element proteinRecName: Full=Transposase InsH for insertion sequence element IS5-14; chromosome CDS2177051 981 + 0.550459
insH IS5 element proteinRecName: Full=Transposase InsH for insertion sequence element IS5-16; chromosome CDS3746979 981 + 0.550459
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5K; chromosome CDS2292399 1017 - 0.546706
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5Y; chromosome CDS1429460 981 - 0.554536
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5D; chromosome CDS688419 1017 - 0.546706
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5B; chromosome CDS573960 1017 - 0.546706
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5LO; chromosome CDS3128834 1017 + 0.546706
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5R; chromosome CDS3365557 1017 - 0.546706
insH IS5 transposase and trans-activatorRecName: Full=Transposase InsH for insertion sequence element IS5F; chromosome CDS1397790 1017 + 0.546706
insI IS30 transposaseRecName: Full=Transposase InsI for insertion sequence element IS30A; chromosome CDS269827 1152 + 0.458333
insI IS30 transposaseRecName: Full=Transposase InsI for insertion sequence element IS30C; chromosome CDS1471072 1152 + 0.458333
insI IS30 transposaseRecName: Full=Transposase InsI for insertion sequence element IS30D; chromosome CDS4512146 1152 - 0.458333
insJ IS150 protein InsARecName: Full=Insertion element IS150 uncharacterized 19.7 kDa protein; AltName: Full=ORFA; chromosome CDS3919214 522 - 0.461686
insK IS150 conserved protein InsBRecName: Full=Putative transposase InsK for insertion sequence element IS150; chromosome CDS3918366 852 - 0.428404
insL IS186/IS421 transposaseRecName: Full=Putative transposase InsL for insertion sequence element IS186B; chromosome CDS607288 1113 + 0.519317
insL IS186/IS421 transposaseRecName: Full=Putative transposase InsL for insertion sequence element IS186A; chromosome CDS15445 1113 + 0.519317
insL predicted transposaseRecName: Full=Putative transposase InsL for insertion sequence element IS186C; chromosome CDS2519777 1113 + 0.519317
insM chromosome pseudo4513254 369 - 0.444444
insN partial regulator of insertion element IS911BRecName: Full=Transposase InsN for insertion sequence element IS911B; chromosome CDS4511877 267 + 0.430712
insN partial regulator of insertion element IS911ARecName: Full=Transposase InsN for insertion sequence element IS911A; chromosome CDS269466 405 + 0.437037
insO chromosome pseudo4513638 597 + 0.552764
insO partial transposase of insertion element IS911ARecName: Full=Putative transposase InsO for insertion sequence element IS911A; chromosome CDS271054 426 + 0.556338
intA integraseRecName: Full=Prophage CP4-57 integrase; chromosome CDS2754815 1242 + 0.475845
intB predicted integraseRecName: Full=Putative prophage P4 integrase; AltName: Full=Int(P4); chromosome CDS4501430 1191 + 0.457599
intD predicted integraseRecName: Full=Prophage DLP12 integrase; AltName: Full=Prophage QSR integrase; chromosome CDS564038 1164 - 0.469072
intE predicted integraseRecName: Full=Prophage lambda integrase; AltName: Full=Int(Lambda); AltName: Full=Prophage e14 integrase; chromosome CDS1201256 1128 - 0.447695
intF predicted phage integraseRecName: Full=Putative prophage CP4-6 integrase; chromosome CDS294920 1401 - 0.443255
intG chromosome pseudo2014639 279 + 0.480287
intQ predicted defective integraseRecName: Full=Putative lambdoid prophage Qin defective integrase; Flags: Fragment; chromosome CDS1653226 1197 + 0.422723
intR integraseRecName: Full=Putative lambdoid prophage Rac integrase; chromosome CDS1413714 1236 - 0.429612
intS predicted prophage CPS-53 integraseRecName: Full=Putative prophage CPS-53 integrase; chromosome CDS2471991 1158 + 0.477547
ligA DNA ligase, NAD(+)-dependentRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2533607 2016 - 0.544147
ligB DNA ligase, NAD(+)-dependentRecName: Full=DNA ligase B; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)] B; chromosome CDS3819245 1683 + 0.525847
mcrB 5-methylcytosine-specific restriction enzyme McrBC, subunit McrBRecName: Full=5-methylcytosine-specific restriction enzyme B; EC=3.1.21.-; AltName: Full=EcoKMcrBC; chromosome CDS4582638 1380 - 0.403623
mfd transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1172095 3447 - 0.547723
mutH methyl-directed mismatch repair proteinRecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; chromosome CDS2968318 690 + 0.536232
mutL methyl-directed mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS4402092 1848 + 0.562771
mutM formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS3829263 810 + 0.538272
mutS methyl-directed mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS2855749 2562 + 0.56128
mutT nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTPRecName: Full=8-oxo-dGTP diphosphatase; Short=8-oxo-dGTPase; EC=3.6.1.55; AltName: Full=7,8-dihydro-8-oxoguanine-triphosphatase; AltName: Full=Mutator protein MutT; AltName: Full=dGTP pyrophosphohydrolase; chromosome CDS111044 390 + 0.492308
mutY adenine DNA glycosylaseRecName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS3101669 1053 + 0.551757
nei endonuclease VIIIRecName: Full=Endonuclease 8; AltName: Full=DNA glycosylase/AP lyase Nei; EC=3.2.2.-; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase Nei; AltName: Full=Endonuclease VIII; chromosome CDS746357 792 + 0.52399
nfi endonuclease VRecName: Full=Endonuclease V; Short=EndoV; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; chromosome CDS3437220 672 - 0.587798
nfo endonuclease IV with intrinsic 3'-5' exonuclease activityRecName: Full=Endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS2254174 858 + 0.524476
nohA predicted packaging proteinRecName: Full=Putative prophage Qin DNA-packaging protein NU1 homolog; chromosome CDS1637512 570 - 0.536842
nohB DNA packaging proteinRecName: Full=DNA-packaging protein NU1 homolog; chromosome CDS580057 546 + 0.525641
nth DNA glycosylase and apyrimidinic (AP) lyaseRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1713237 636 + 0.492138
nudB dATP pyrophosphohydrolaseRecName: Full=Dihydroneopterin triphosphate pyrophosphatase; EC=3.6.1.-; AltName: Full=dATP pyrophosphohydrolase; chromosome CDS1949894 453 - 0.525386
nudC NADH pyrophosphataseRecName: Full=NADH pyrophosphatase; EC=3.6.1.22; chromosome CDS3439005 774 - 0.5323
nudD GDP-mannose mannosyl hydrolaseRecName: Full=GDP-mannose mannosyl hydrolase; Short=GDPMH; EC=3.6.1.-; AltName: Full=Colanic acid biosynthesis protein WcaH; chromosome CDS2127880 480 - 0.545833
nudE ADP-ribose diphosphataseRecName: Full=ADP compounds hydrolase NudE; EC=3.6.1.-; chromosome CDS4114267 561 + 0.508021
nudF ADP-ribose pyrophosphataseRecName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; AltName: Full=ADP-ribose diphosphatase; AltName: Full=ADP-ribose phosphohydrolase; Short=ASPPase; AltName: Full=Adenosine diphosphoribose pyrophosphatase; Short=ADPR-PPase; chromosome CDS3175937 630 - 0.507937
nudG pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolaseRecName: Full=CTP pyrophosphohydrolase; EC=3.6.1.65; chromosome CDS1843204 408 + 0.54902
nudH nucleotide hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; AltName: Full=Ap5A pyrophosphatase; chromosome CDS2967103 531 - 0.493409
ogt O-6-alkylguanine-DNA:cysteine-proteinmethyltrans feraseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; Short=MGMT; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS1401435 516 - 0.531008
parC DNA topoisomerase IV, subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS3162371 2259 - 0.546702
parE DNA topoisomerase IV, subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS3172160 1893 - 0.535658
phr deoxyribodipyrimidine photolyase, FAD-bindingRecName: Full=Deoxyribodipyrimidine photo-lyase; EC=4.1.99.3; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme; chromosome CDS739929 1419 + 0.534884
pin site-specific DNA recombinaseRecName: Full=DNA-invertase from lambdoid prophage e14; chromosome CDS1211262 555 + 0.488288
pinQ predicted site-specific recombinaseRecName: Full=Putative DNA-invertase from lambdoid prophage Qin; chromosome CDS1635336 591 + 0.448393
pinR predicted site-specific recombinaseRecName: Full=Putative DNA-invertase from lambdoid prophage Rac; chromosome CDS1434798 591 - 0.446701
polA fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonucleaseRecName: Full=DNA polymerase I; Short=POL I; EC=2.7.7.7; chromosome CDS3586929 2787 - 0.519555
polB DNA polymerase IIRecName: Full=DNA polymerase II; Short=Pol II; EC=2.7.7.7; chromosome CDS63429 2352 - 0.553571
priA primosome factor n'RecName: Full=Primosomal protein N; EC=3.6.4.-; AltName: Full=ATP-dependent helicase PriA; AltName: Full=Replication factor Y; chromosome CDS3509871 2199 + 0.574807
priB primosomal protein NRecName: Full=Primosomal replication protein n; chromosome CDS4430200 315 + 0.52381
priC primosomal replication protein N''RecName: Full=Primosomal replication protein N; chromosome CDS489509 528 - 0.589015
rdgC DNA-binding protein, non-specificRecName: Full=Recombination-associated protein RdgC; chromosome CDS408332 912 - 0.515351
recA DNA strand exchange and recombination protein with protease and nuclease activityRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2821364 1062 - 0.541431
recB exonuclease V (RecBCD complex), beta subunitRecName: Full=RecBCD enzyme subunit RecB; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 135 kDa polypeptide; AltName: Full=Exodeoxyribonuclease V beta chain; AltName: Full=Exonuclease V subunit RecB; Short=ExoV subunit RecB; AltName: Full=Helicase/nuclease RecBCD subunit RecB; chromosome CDS2951117 3543 - 0.545583
recC exonuclease V (RecBCD complex), gamma chainRecName: Full=RecBCD enzyme subunit RecC; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 125 kDa polypeptide; AltName: Full=Exodeoxyribonuclease V gamma chain; AltName: Full=Exonuclease V subunit RecC; Short=ExoV subunit RecC; chromosome CDS2957716 3369 - 0.536064
recD exonuclease V (RecBCD complex), alpha chainRecName: Full=RecBCD enzyme subunit RecD; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 67 kDa polypeptide; AltName: Full=Exodeoxyribonuclease V alpha chain; AltName: Full=Exonuclease V subunit RecD; Short=ExoV subunit RecD; AltName: Full=Helicase/nuclease RecBCD subunit RecD; chromosome CDS2949291 1827 - 0.552819
recF gap repair proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS3759194 1074 + 0.550279
recG ATP-dependent DNA helicaseRecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; chromosome CDS3813124 2082 - 0.572046
recJ ssDNA exonuclease, 5'--> 3'-specificRecName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS3035029 1734 - 0.566321
recN recombination and repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2750451 1662 + 0.518051
recO gap repair proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2700397 729 - 0.540466
recQ ATP-dependent DNA helicaseRecName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.4.12; chromosome CDS3628988 1830 - 0.551366
recR gap repair proteinRecName: Full=Recombination protein RecR; chromosome CDS493629 606 + 0.577558
recT recombination and repair proteinRecName: Full=Protein RecT; AltName: Full=P33; chromosome CDS1415698 810 - 0.471605
relB bifunctional antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressorRecName: Full=Antitoxin RelB; chromosome CDS1647347 240 - 0.470833
rep DNA helicase and single-stranded DNA-dependent ATPaseRecName: Full=ATP-dependent DNA helicase Rep; EC=3.6.4.12; chromosome CDS3673983 2022 - 0.534619
rfaP kinase that phosphorylates core heptose of lipopolysaccharideRecName: Full=Lipopolysaccharide core heptose(I) kinase RfaP; EC=2.7.1.-; chromosome CDS3834465 798 + 0.433584
rfaZ lipopolysaccharide core biosynthesis proteinRecName: Full=Lipopolysaccharide core biosynthesis protein RfaZ; chromosome CDS3840219 852 + 0.325117
rhlB ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS3671051 1266 + 0.525276
rhlE RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS831294 1365 + 0.567033
rnhA ribonuclease HI, degrades RNA of DNA-RNA hybridsRecName: Full=Ribonuclease HI; Short=RNase HI; EC=3.1.26.4; AltName: Full=Ribonuclease H; Short=RNase H; chromosome CDS235535 468 - 0.504274
rnhB ribonuclease HII, degrades RNA of DNA-RNA hybridsRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS204493 597 + 0.572864
rnt ribonuclease T (RNase T)RecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS1730061 648 + 0.541667
rusA endonuclease RUSRecName: Full=Crossover junction endodeoxyribonuclease RusA; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RusA; AltName: Full=Holliday junction resolvase; chromosome CDS572594 363 + 0.53168
ruvA component of RuvABC resolvasome, regulatory subunitRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1947079 612 - 0.53268
ruvB ATP-dependent DNA helicase, component of RuvABC resolvasomeRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1946060 1011 - 0.527201
ruvC component of RuvABC resolvasome, endonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1948569 522 - 0.559387
sbcB exonuclease IRecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; EC=3.1.11.1; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase; chromosome CDS2084893 1428 + 0.5007
sbcC exonuclease, dsDNA, ATP-dependentRecName: Full=Nuclease SbcCD subunit C; chromosome CDS411831 3147 - 0.537973
sbcD exonuclease, dsDNA, ATP-dependentRecName: Full=Nuclease SbcCD subunit D; chromosome CDS414974 1203 - 0.532835
sbmC DNA gyrase inhibitorRecName: Full=DNA gyrase inhibitor; chromosome CDS2082926 474 - 0.472574
seqA regulatory protein for replication initiationRecName: Full=Negative modulator of initiation of replication; chromosome CDS713409 546 + 0.496337
smf conserved hypothetical proteinRecName: Full=Protein smf; chromosome CDS4206856 1125 + 0.509333
srmB ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome CDS2711552 1335 + 0.547566
ssb Single-stranded DNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; AltName: Full=Helix-destabilizing protein; chromosome CDS4277715 537 + 0.581006
tag 3-methyl-adenine DNA glycosylase I, constitutiveRecName: Full=DNA-3-methyladenine glycosylase 1; EC=3.2.2.20; AltName: Full=3-methyladenine-DNA glycosylase I, constitutive; Short=TAG I; AltName: Full=DNA-3-methyladenine glycosidase I; AltName: Full=DNA-3-methyladenine glycosylase I; chromosome CDS3926760 564 - 0.498227
tatD DNase, magnesium-dependentRecName: Full=Tat-linked quality control protein TatD; AltName: Full=Deoxyribonuclease TatD; Short=DNase TatD; EC=3.1.21.-; chromosome CDS3612345 783 - 0.542784
topA DNA topoisomerase I, omega subunitRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS1332762 2598 + 0.517706
topB DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS1846713 1962 - 0.551478
umuC DNA polymerase V, subunit CRecName: Full=Protein UmuC; chromosome CDS1232763 1269 + 0.50985
ung uracil-DNA-glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS2715410 690 + 0.521739
uvrA ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABCRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS4274639 2823 - 0.560751
uvrB excinulease of nucleotide excision repair, DNA damage recognition componentRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS813948 2022 + 0.535608
uvrC excinuclease UvrABC, endonuclease subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1995011 1833 - 0.517185
uvrD DNA-dependent ATPase I and helicase IIRecName: Full=DNA helicase II; EC=3.6.4.12; chromosome CDS3636536 2163 - 0.576976
vsr DNA mismatch endonuclease of very short patch repairRecName: Full=Very short patch repair protein; EC=3.1.-.-; AltName: Full=DNA mismatch endonuclease; AltName: Full=V.EcoKDcm; AltName: Full=Vsr mismatch endonuclease; chromosome CDS2032585 471 - 0.56051
xerC site-specific tyrosine recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS3639498 897 - 0.539576
xerD site-specific tyrosine recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS3037503 897 - 0.530658
xseA exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2632888 1371 + 0.532458
xseB exonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS440325 243 - 0.55144
xthA exonuclease IIIRecName: Full=Exodeoxyribonuclease III; Short=EXO III; Short=Exonuclease III; EC=3.1.11.2; AltName: Full=AP endonuclease VI; chromosome CDS1834142 807 + 0.534077
yafM conserved hypothetical proteinRecName: Full=Uncharacterized protein YafM; chromosome CDS247637 498 + 0.447791
yagA predicted DNA-binding transcriptional regulatorRecName: Full=Uncharacterized protein YagA; chromosome CDS280053 1155 - 0.620779
yagL DNA-binding proteinRecName: Full=Uncharacterized protein YagL; chromosome CDS292444 699 - 0.373391
ybaV conserved hypothetical proteinRecName: Full=Uncharacterized protein YbaV; Flags: Precursor; chromosome CDS463161 372 + 0.548387
ybaZ predicted methyltransferaseRecName: Full=Uncharacterized protein YbaZ; chromosome CDS475206 390 - 0.541026
ybcK predicted recombinaseRecName: Full=Uncharacterized protein YbcK; chromosome CDS568125 1527 + 0.355599
ybfD conserved hypothetical proteinRecName: Full=H repeat-associated protein YbfD; AltName: Full=ORF-H3; chromosome CDS738514 762 + 0.396325
ybjD conserved hypothetical protein with nucleoside triphosphate hydrolase domainRecName: Full=Uncharacterized protein YbjD; chromosome CDS916895 1659 + 0.531043
ycaJ recombination proteinRecName: Full=Replication-associated recombination protein A; chromosome CDS938416 1344 + 0.535714
ycfH predicted metallodependent hydrolaseRecName: Full=Uncharacterized deoxyribonuclease YcfH; EC=3.1.21.-; chromosome CDS1158354 798 + 0.508772
ydaV predicted DNA replication proteinRecName: Full=Uncharacterized protein YdaV; chromosome CDS1423697 747 + 0.527443
ydcC conserved hypothetical proteinRecName: Full=H repeat-associated protein YdcC; AltName: Full=ORF-H; chromosome CDS1533530 1137 + 0.417766
ydcM predicted transposaseRecName: Full=Putative transposase InsQ for insertion sequence element IS609; chromosome CDS1505371 1209 + 0.514475
ydjQ endonuclease of nucleotide excision repairRecName: Full=Excinuclease cho; EC=3.1.25.-; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein; chromosome CDS1825229 888 + 0.515766
yeaB predicted NUDIX hydrolaseRecName: Full=Uncharacterized Nudix hydrolase NudL; EC=3.6.1.-; chromosome CDS1897884 579 + 0.549223
yeeS predicted DNA repair proteinRecName: Full=UPF0758 protein YeeS; chromosome CDS2078445 447 + 0.581656
yejH predicted ATP-dependet helicaseRecName: Full=Uncharacterized protein YejH; chromosome CDS2283966 1761 + 0.531516
yfaO predicted NUDIX hydrolaseRecName: Full=Nucleoside triphosphatase NudI; EC=3.6.1.-; chromosome CDS2369224 426 + 0.476526
yfcD predicted NUDIX hydrolaseRecName: Full=Uncharacterized Nudix hydrolase YfcD; EC=3.6.-.-; chromosome CDS2424080 543 - 0.532228
yffH predicted NUDIX hydrolaseRecName: Full=GDP-mannose pyrophosphatase NudK; EC=3.6.1.-; chromosome CDS2581559 576 - 0.486111
yfjY predicted DNA repair proteinRecName: Full=UPF0758 protein YfjY; chromosome CDS2775042 483 + 0.542443
ygbT conserved hypothetical proteinRecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS2877511 918 - 0.513072
ygiV predicted transcriptional regulatorRecName: Full=Probable transcriptional regulator YgiV; chromosome CDS3167405 483 - 0.532091
ygjF G/U mismatch-specific DNA glycosylaseRecName: Full=G/U mismatch-specific DNA glycosylase; EC=3.2.2.28; AltName: Full=Double-strand-specific uracil glycosylase; AltName: Full=Mismatch-specific uracil DNA-glycosylase; Short=MUG; chromosome CDS3213623 507 - 0.536489
yhbQ predicted endonucleaseRecName: Full=UPF0213 protein YhbQ; chromosome CDS3299821 303 + 0.544554
yhdJ predicted methyltransferaseRecName: Full=DNA adenine methyltransferase YhdJ; EC=2.1.1.72; chromosome CDS3411508 885 + 0.474576
yhhF predicted methyltransferaseRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; AltName: Full=16S rRNA m2G966 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase; chromosome CDS4035426 597 - 0.539364
yhhI predicted transposaseRecName: Full=H repeat-associated protein YhhI; AltName: Full=ORF-H; chromosome CDS4014901 1137 - 0.415128
yicR protein associated with replication fork, possible DNA repair proteinRecName: Full=UPF0758 protein YicR; chromosome CDS3827856 669 + 0.479821
yjbI conserved hypothetical proteinRecName: Full=Putative uncharacterized protein YjbI; chromosome CDS4254545 1329 + 0.331828
yjhR predicted frameshift suppressorRecName: Full=Putative uncharacterized protein YjhR; chromosome CDS4539695 1017 + 0.437561
yjjV predicted DNaseRecName: Full=Uncharacterized deoxyribonuclease YjjV; EC=3.1.21.-; chromosome CDS4618161 780 + 0.555128
ykfC conserved hypothetical proteinRecName: Full=Putative uncharacterized protein YkfC; chromosome CDS272071 1146 + 0.545375
ykfG predicted DNA repair proteinRecName: Full=UPF0758 protein YkfG; chromosome CDS263480 477 - 0.584906
ykgN predicted IS proteinRecName: Full=Putative transposase YkgN; chromosome CDS279248 339 - 0.451327
ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolaseRecName: Full=Phosphatase NudJ; EC=3.6.1.-; chromosome CDS1195404 462 - 0.502164
yncI hypothetical proteinRecName: Full=Putative transposase YncI; chromosome CDS1532300 747 + 0.380187
yncM hypothetical proteinRecName: Full=Putative transposase YncI; chromosome CDS1533090 201 + 0.40796
yoaA conserved hypothetical protein with nucleoside triphosphate hydrolase domainRecName: Full=Probable ATP-dependent helicase YoaA; EC=3.6.4.12; chromosome CDS1893039 1911 - 0.552067
yqgF predicted Holliday junction resolvaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS3092156 417 + 0.529976
yraN conserved hypothetical proteinRecName: Full=UPF0102 protein YraN; chromosome CDS3295249 396 + 0.545455
yrdD predicted DNA topoisomeraseRecName: Full=Uncharacterized protein YrdD; chromosome CDS4208454 543 + 0.497238