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2024-04-28 19:12:38

Gene list

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COG category: Replication, recombination and repair
Organism: Escherichia coli W3110, K-12

Number of genes found: 251

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Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
ada fused DNA-binding transcriptional dual regulator and O6-methylguanine-DNA methyltransferasechromosome CDS2312675 1065 - 0.569014
alkA 3-methyl-adenine DNA glycosylase IIchromosome CDS2148829 849 - 0.555948
alkB oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesionschromosome CDS2312025 651 - 0.526882
dam DNA adenine methylasechromosome CDS4124503 837 + 0.495818
dbpA ATP-dependent RNA helicase specific for 23S rRNAchromosome CDS1411225 1374 + 0.519651
dcm DNA cytosine methylasechromosome CDS2033036 1419 - 0.521494
deaD ATP-dependent RNA helicasechromosome CDS3305826 1890 - 0.555556
dinB DNA polymerase IVchromosome CDS250898 1056 + 0.541667
dinG ATP-dependent DNA helicasechromosome CDS833492 2151 + 0.540679
dinJ predicted antitoxin of YafQ-DinJ toxin-antitoxin systemchromosome CDS246242 261 - 0.467433
dnaA chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulatorchromosome CDS3756686 1404 + 0.540598
dnaB replicative DNA helicasechromosome CDS4267904 1416 + 0.538136
dnaC DNA biosynthesis proteinchromosome CDS4604918 738 - 0.50542
dnaE DNA polymerase III alpha subunitchromosome CDS205126 3483 + 0.549526
dnaG DNA primasechromosome CDS3209763 1746 + 0.52291
dnaN DNA polymerase III, beta subunitchromosome CDS3758094 1101 + 0.542234
dnaQ DNA polymerase III epsilon subunitchromosome CDS236067 732 + 0.501366
dnaX DNA polymerase III/DNA elongation factor III, tau and gamma subunitschromosome CDS491316 1932 + 0.576605
endA DNA-specific endonuclease Ichromosome CDS3089003 708 + 0.548023
exo exonuclease IX (5'-3' exonuclease)chromosome CDS2929621 846 + 0.527187
exoX DNA exonuclease Xchromosome CDS1927834 663 + 0.518854
fimB tyrosine recombinase/inversion of on/off regulator of fimAchromosome CDS4545637 603 + 0.434494
fimE tyrosine recombinase/inversion of on/off regulator of fimAchromosome CDS4546717 597 + 0.469012
fis global DNA-binding transcriptional dual regulatorchromosome CDS3411126 297 + 0.47138
gyrA DNA gyrase (type II topoisomerase), subunit Achromosome CDS2341463 2628 - 0.539954
gyrB DNA gyrase, subunit Bchromosome CDS3760296 2415 + 0.549896
hda ATPase regulatory factor involved in DnaA inactivationchromosome CDS2616731 747 - 0.531459
helD DNA helicase IVchromosome CDS1024893 2055 + 0.530414
hepA RNA polymerase-associated helicase proteinchromosome CDS60358 2907 - 0.54902
holA DNA polymerase III, delta subunitchromosome CDS670996 1032 - 0.523256
holB DNA polymerase III, delta prime subunitchromosome CDS1157339 1005 + 0.540299
holC DNA polymerase III, chi subunitchromosome CDS4488517 444 - 0.540541
holD DNA polymerase III, psi subunitchromosome CDS4612483 414 + 0.577295
hrpA ATP-dependent helicasechromosome CDS1484832 3846 + 0.535101
hrpB predicted ATP-dependent helicasechromosome CDS162105 2430 + 0.565844
hupA HU, DNA-binding transcriptional regulator, alpha subunitchromosome CDS3436128 273 - 0.483516
hupB HU, DNA-binding transcriptional regulator, beta subunitchromosome CDS460675 273 + 0.490842
ihfA integration host factor (IHF), DNA-binding protein, alpha subunitchromosome CDS1796967 300 - 0.5
ihfB integration host factor (IHF), DNA-binding protein, beta subunitchromosome CDS964250 285 + 0.491228
insA IS1 repressor protein InsAchromosome CDS4523207 276 + 0.528986
insA IS1 repressor protein InsAchromosome CDS4056657 276 - 0.528986
insA IS1 repressor protein InsAchromosome CDS1050255 276 + 0.528986
insA IS1 element proteinchromosome CDS2411895 276 - 0.528986
insA IS1 repressor protein InsAchromosome CDS278824 276 - 0.532609
insA IS1 repressor protein InsAchromosome CDS20233 276 - 0.528986
insA IS1 repressor protein InsAchromosome CDS290295 276 - 0.532609
insB IS1 element proteinchromosome CDS2411473 504 - 0.545635
insB IS1 transposase InsAB'chromosome CDS278402 504 - 0.551587
insB IS1 transposase InsAB'chromosome CDS4056235 504 - 0.545635
insB IS1 transposase InsAB'chromosome CDS1050449 504 + 0.547619
insB IS1 transposase InsAB'chromosome CDS19811 504 - 0.545635
insB IS1 transposase InsAB'chromosome CDS289873 504 - 0.551587
insC IS2 insertion element repressor InsAchromosome CDS1470498 411 - 0.508516
insC IS2 insertion element repressor InsAchromosome CDS3184798 411 + 0.508516
insC IS2 insertion element repressor InsAchromosome CDS380530 411 + 0.508516
insC IS2 insertion element repressor InsAchromosome CDS2995891 411 - 0.508516
insC IS2 insertion element repressor InsAchromosome CDS2071952 411 - 0.508516
insC IS2 element proteinchromosome CDS3743807 366 - 0.530055
insC IS2 element proteinchromosome CDS2321668 366 - 0.530055
insC IS2 element proteinchromosome CDS1106496 366 - 0.530055
insC IS2 element proteinchromosome CDS1301130 366 + 0.530055
insC IS2 insertion element repressor InsAchromosome CDS4502907 411 + 0.508516
insD IS2 insertion element transposase InsAB'chromosome CDS3185166 906 + 0.550773
insD IS2 insertion element transposase InsAB'chromosome CDS4503275 906 + 0.550773
insD IS2 insertion element transposase InsAB'chromosome CDS2995028 906 - 0.550773
insD IS2 element proteinchromosome CDS2320805 924 - 0.547619
insD IS2 insertion element transposase InsAB'chromosome CDS380898 906 + 0.550773
insD IS2 element proteinchromosome CDS3742944 924 - 0.547619
insD IS2 insertion element transposase InsAB'chromosome CDS2071089 906 - 0.550773
insD IS2 insertion element transposase InsAB'chromosome CDS1469635 906 - 0.550773
insD predicted transposasechromosome CDS1652595 657 + 0.543379
insD IS2 element proteinchromosome CDS1105633 924 - 0.547619
insD IS2 element proteinchromosome CDS1301435 924 + 0.547619
insE IS3 element protein InsEchromosome CDS2172364 309 + 0.501618
insE IS3 element protein InsEchromosome CDS566056 309 + 0.501618
insE IS3 element proteinchromosome CDS1095560 309 - 0.501618
insE IS3 element proteinchromosome CDS314506 309 + 0.501618
insE IS3 element proteinchromosome CDS391826 309 - 0.501618
insF IS3 element protein InsFchromosome CDS1094697 867 - 0.551326
insF IS3 element protein InsFchromosome CDS2172669 867 + 0.551326
insF IS3 element protein InsFchromosome CDS314811 867 + 0.551326
insF IS3 element protein InsFchromosome CDS390963 867 - 0.551326
insF IS3 element protein InsFchromosome CDS566361 867 + 0.551326
insG IS4 predicted transposasechromosome CDS4506783 1329 - 0.541761
insH IS5 element proteinchromosome CDS3746979 981 + 0.550459
insH IS5 element proteinchromosome CDS3261202 981 + 0.550459
insH IS5 transposase and trans-activatorchromosome CDS573960 1017 - 0.546706
insH IS5 element proteinchromosome CDS3750659 981 + 0.550459
insH IS5 transposase and trans-activatorchromosome CDS2292399 1017 - 0.546706
insH IS5 transposase and trans-activatorchromosome CDS3365557 1017 - 0.546706
insH IS5 transposase and trans-activatorchromosome CDS2068442 1017 - 0.546706
insH IS5 transposase and trans-activatorchromosome CDS3128834 1017 + 0.546706
insH IS5 transposase and trans-activatorchromosome CDS2104032 1017 - 0.546706
insH IS5 element proteinchromosome CDS1980355 1017 - 0.546706
insH IS5 transposase and trans-activatorchromosome CDS1397790 1017 + 0.546706
insH IS5 element proteinchromosome CDS654281 981 + 0.550459
insH IS5 transposase and trans-activatorchromosome CDS1429460 981 - 0.554536
insH IS5 transposase and trans-activatorchromosome CDS688419 1017 - 0.546706
insH IS5 transposase and trans-activatorchromosome CDS273325 1017 - 0.546706
insH IS5 element proteinchromosome CDS2177051 981 + 0.550459
insH IS5 transposase and trans-activatorchromosome CDS3987217 1017 + 0.546706
insH IS5 element proteinchromosome CDS4310431 981 + 0.550459
insI IS30 transposasechromosome CDS269827 1152 + 0.458333
insI IS30 transposasechromosome CDS4512146 1152 - 0.458333
insI IS30 transposasechromosome CDS1471072 1152 + 0.458333
insJ IS150 protein InsAchromosome CDS3919214 522 - 0.461686
insK IS150 conserved protein InsBchromosome CDS3918366 852 - 0.428404
insL IS186/IS421 transposasechromosome CDS607288 1113 + 0.519317
insL predicted transposasechromosome CDS2519777 1113 + 0.519317
insL IS186/IS421 transposasechromosome CDS15445 1113 + 0.519317
insM chromosome pseudo4513254 369 - 0.444444
insN partial regulator of insertion element IS911Bchromosome CDS4511877 267 + 0.430712
insN partial regulator of insertion element IS911Achromosome CDS269466 405 + 0.437037
insO chromosome pseudo4513638 597 + 0.552764
insO partial transposase of insertion element IS911Achromosome CDS271054 426 + 0.556338
intA integrasechromosome CDS2754815 1242 + 0.475845
intB predicted integrasechromosome CDS4501430 1191 + 0.457599
intD predicted integrasechromosome CDS564038 1164 - 0.469072
intE predicted integrasechromosome CDS1201256 1128 - 0.447695
intF predicted phage integrasechromosome CDS294920 1401 - 0.443255
intG chromosome pseudo2014639 279 + 0.480287
intQ predicted defective integrasechromosome CDS1653226 1197 + 0.422723
intR integrasechromosome CDS1413714 1236 - 0.429612
intS predicted prophage CPS-53 integrasechromosome CDS2471991 1158 + 0.477547
ligA DNA ligase, NAD(+)-dependentchromosome CDS2533607 2016 - 0.544147
ligB DNA ligase, NAD(+)-dependentchromosome CDS3819245 1683 + 0.525847
mcrB 5-methylcytosine-specific restriction enzyme McrBC, subunit McrBchromosome CDS4582638 1380 - 0.403623
mfd transcription-repair coupling factorchromosome CDS1172095 3447 - 0.547723
mutH methyl-directed mismatch repair proteinchromosome CDS2968318 690 + 0.536232
mutL methyl-directed mismatch repair proteinchromosome CDS4402092 1848 + 0.562771
mutM formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylasechromosome CDS3829263 810 + 0.538272
mutS methyl-directed mismatch repair proteinchromosome CDS2855749 2562 + 0.56128
mutT nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTPchromosome CDS111044 390 + 0.492308
mutY adenine DNA glycosylasechromosome CDS3101669 1053 + 0.551757
nei endonuclease VIIIchromosome CDS746357 792 + 0.52399
nfi endonuclease Vchromosome CDS3437220 672 - 0.587798
nfo endonuclease IV with intrinsic 3'-5' exonuclease activitychromosome CDS2254174 858 + 0.524476
nohA predicted packaging proteinchromosome CDS1637512 570 - 0.536842
nohB DNA packaging proteinchromosome CDS580057 546 + 0.525641
nth DNA glycosylase and apyrimidinic (AP) lyasechromosome CDS1713237 636 + 0.492138
nudB dATP pyrophosphohydrolasechromosome CDS1949894 453 - 0.525386
nudC NADH pyrophosphatasechromosome CDS3439005 774 - 0.5323
nudD GDP-mannose mannosyl hydrolasechromosome CDS2127880 480 - 0.545833
nudE ADP-ribose diphosphatasechromosome CDS4114267 561 + 0.508021
nudF ADP-ribose pyrophosphatasechromosome CDS3175937 630 - 0.507937
nudG pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolasechromosome CDS1843204 408 + 0.54902
nudH nucleotide hydrolasechromosome CDS2967103 531 - 0.493409
ogt O-6-alkylguanine-DNA:cysteine-proteinmethyltrans ferasechromosome CDS1401435 516 - 0.531008
parC DNA topoisomerase IV, subunit Achromosome CDS3162371 2259 - 0.546702
parE DNA topoisomerase IV, subunit Bchromosome CDS3172160 1893 - 0.535658
phr deoxyribodipyrimidine photolyase, FAD-bindingchromosome CDS739929 1419 + 0.534884
pin site-specific DNA recombinasechromosome CDS1211262 555 + 0.488288
pinQ predicted site-specific recombinasechromosome CDS1635336 591 + 0.448393
pinR predicted site-specific recombinasechromosome CDS1434798 591 - 0.446701
polA fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonucleasechromosome CDS3586929 2787 - 0.519555
polB DNA polymerase IIchromosome CDS63429 2352 - 0.553571
priA primosome factor n'chromosome CDS3509871 2199 + 0.574807
priB primosomal protein Nchromosome CDS4430200 315 + 0.52381
priC primosomal replication protein N''chromosome CDS489509 528 - 0.589015
rdgC DNA-binding protein, non-specificchromosome CDS408332 912 - 0.515351
recA DNA strand exchange and recombination protein with protease and nuclease activitychromosome CDS2821364 1062 - 0.541431
recB exonuclease V (RecBCD complex), beta subunitchromosome CDS2951117 3543 - 0.545583
recC exonuclease V (RecBCD complex), gamma chainchromosome CDS2957716 3369 - 0.536064
recD exonuclease V (RecBCD complex), alpha chainchromosome CDS2949291 1827 - 0.552819
recF gap repair proteinchromosome CDS3759194 1074 + 0.550279
recG ATP-dependent DNA helicasechromosome CDS3813124 2082 - 0.572046
recJ ssDNA exonuclease, 5'--> 3'-specificchromosome CDS3035029 1734 - 0.566321
recN recombination and repair proteinchromosome CDS2750451 1662 + 0.518051
recO gap repair proteinchromosome CDS2700397 729 - 0.540466
recQ ATP-dependent DNA helicasechromosome CDS3628988 1830 - 0.551366
recR gap repair proteinchromosome CDS493629 606 + 0.577558
recT recombination and repair proteinchromosome CDS1415698 810 - 0.471605
relB bifunctional antitoxin of the RelE-RelB toxin-antitoxin system and transcriptional repressorchromosome CDS1647347 240 - 0.470833
rep DNA helicase and single-stranded DNA-dependent ATPasechromosome CDS3673983 2022 - 0.534619
rfaP kinase that phosphorylates core heptose of lipopolysaccharidechromosome CDS3834465 798 + 0.433584
rfaZ lipopolysaccharide core biosynthesis proteinchromosome CDS3840219 852 + 0.325117
rhlB ATP-dependent RNA helicasechromosome CDS3671051 1266 + 0.525276
rhlE RNA helicasechromosome CDS831294 1365 + 0.567033
rnhA ribonuclease HI, degrades RNA of DNA-RNA hybridschromosome CDS235535 468 - 0.504274
rnhB ribonuclease HII, degrades RNA of DNA-RNA hybridschromosome CDS204493 597 + 0.572864
rnt ribonuclease T (RNase T)chromosome CDS1730061 648 + 0.541667
rusA endonuclease RUSchromosome CDS572594 363 + 0.53168
ruvA component of RuvABC resolvasome, regulatory subunitchromosome CDS1947079 612 - 0.53268
ruvB ATP-dependent DNA helicase, component of RuvABC resolvasomechromosome CDS1946060 1011 - 0.527201
ruvC component of RuvABC resolvasome, endonucleasechromosome CDS1948569 522 - 0.559387
sbcB exonuclease Ichromosome CDS2084893 1428 + 0.5007
sbcC exonuclease, dsDNA, ATP-dependentchromosome CDS411831 3147 - 0.537973
sbcD exonuclease, dsDNA, ATP-dependentchromosome CDS414974 1203 - 0.532835
sbmC DNA gyrase inhibitorchromosome CDS2082926 474 - 0.472574
seqA regulatory protein for replication initiationchromosome CDS713409 546 + 0.496337
smf conserved hypothetical proteinchromosome CDS4206856 1125 + 0.509333
srmB ATP-dependent RNA helicasechromosome CDS2711552 1335 + 0.547566
ssb Single-stranded DNA-binding proteinchromosome CDS4277715 537 + 0.581006
tag 3-methyl-adenine DNA glycosylase I, constitutivechromosome CDS3926760 564 - 0.498227
tatD DNase, magnesium-dependentchromosome CDS3612345 783 - 0.542784
topA DNA topoisomerase I, omega subunitchromosome CDS1332762 2598 + 0.517706
topB DNA topoisomerase IIIchromosome CDS1846713 1962 - 0.551478
umuC DNA polymerase V, subunit Cchromosome CDS1232763 1269 + 0.50985
ung uracil-DNA-glycosylasechromosome CDS2715410 690 + 0.521739
uvrA ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABCchromosome CDS4274639 2823 - 0.560751
uvrB excinulease of nucleotide excision repair, DNA damage recognition componentchromosome CDS813948 2022 + 0.535608
uvrC excinuclease UvrABC, endonuclease subunitchromosome CDS1995011 1833 - 0.517185
uvrD DNA-dependent ATPase I and helicase IIchromosome CDS3636536 2163 - 0.576976
vsr DNA mismatch endonuclease of very short patch repairchromosome CDS2032585 471 - 0.56051
xerC site-specific tyrosine recombinasechromosome CDS3639498 897 - 0.539576
xerD site-specific tyrosine recombinasechromosome CDS3037503 897 - 0.530658
xseA exonuclease VII, large subunitchromosome CDS2632888 1371 + 0.532458
xseB exonuclease VII small subunitchromosome CDS440325 243 - 0.55144
xthA exonuclease IIIchromosome CDS1834142 807 + 0.534077
yafM conserved hypothetical proteinchromosome CDS247637 498 + 0.447791
yagA predicted DNA-binding transcriptional regulatorchromosome CDS280053 1155 - 0.620779
yagL DNA-binding proteinchromosome CDS292444 699 - 0.373391
ybaV conserved hypothetical proteinchromosome CDS463161 372 + 0.548387
ybaZ predicted methyltransferasechromosome CDS475206 390 - 0.541026
ybcK predicted recombinasechromosome CDS568125 1527 + 0.355599
ybfD conserved hypothetical proteinchromosome CDS738514 762 + 0.396325
ybjD conserved hypothetical protein with nucleoside triphosphate hydrolase domainchromosome CDS916895 1659 + 0.531043
ycaJ recombination proteinchromosome CDS938416 1344 + 0.535714
ycfH predicted metallodependent hydrolasechromosome CDS1158354 798 + 0.508772
ydaV predicted DNA replication proteinchromosome CDS1423697 747 + 0.527443
ydcC conserved hypothetical proteinchromosome CDS1533530 1137 + 0.417766
ydcM predicted transposasechromosome CDS1505371 1209 + 0.514475
ydjQ endonuclease of nucleotide excision repairchromosome CDS1825229 888 + 0.515766
yeaB predicted NUDIX hydrolasechromosome CDS1897884 579 + 0.549223
yeeS predicted DNA repair proteinchromosome CDS2078445 447 + 0.581656
yejH predicted ATP-dependet helicasechromosome CDS2283966 1761 + 0.531516
yfaO predicted NUDIX hydrolasechromosome CDS2369224 426 + 0.476526
yfcD predicted NUDIX hydrolasechromosome CDS2424080 543 - 0.532228
yffH predicted NUDIX hydrolasechromosome CDS2581559 576 - 0.486111
yfjY predicted DNA repair proteinchromosome CDS2775042 483 + 0.542443
ygbT conserved hypothetical proteinchromosome CDS2877511 918 - 0.513072
ygiV predicted transcriptional regulatorchromosome CDS3167405 483 - 0.532091
ygjF G/U mismatch-specific DNA glycosylasechromosome CDS3213623 507 - 0.536489
yhbQ predicted endonucleasechromosome CDS3299821 303 + 0.544554
yhdJ predicted methyltransferasechromosome CDS3411508 885 + 0.474576
yhhF predicted methyltransferasechromosome CDS4035426 597 - 0.539364
yhhI predicted transposasechromosome CDS4014901 1137 - 0.415128
yicR protein associated with replication fork, possible DNA repair proteinchromosome CDS3827856 669 + 0.479821
yjbI conserved hypothetical proteinchromosome CDS4254545 1329 + 0.331828
yjhR predicted frameshift suppressorchromosome CDS4539695 1017 + 0.437561
yjjV predicted DNasechromosome CDS4618161 780 + 0.555128
ykfC conserved hypothetical proteinchromosome CDS272071 1146 + 0.545375
ykfG predicted DNA repair proteinchromosome CDS263480 477 - 0.584906
ykgN predicted IS proteinchromosome CDS279248 339 - 0.451327
ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolasechromosome CDS1195404 462 - 0.502164
yncI hypothetical proteinchromosome CDS1532300 747 + 0.380187
yncM hypothetical proteinchromosome CDS1533090 201 + 0.40796
yoaA conserved hypothetical protein with nucleoside triphosphate hydrolase domainchromosome CDS1893039 1911 - 0.552067
yqgF predicted Holliday junction resolvasechromosome CDS3092156 417 + 0.529976
yraN conserved hypothetical proteinchromosome CDS3295249 396 + 0.545455
yrdD predicted DNA topoisomerasechromosome CDS4208454 543 + 0.497238