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# Chlamydophila felis Fe/C-56, Fe/C-56

>gid:914493  CF0406  conserved hypothetical protein
MSKPKAKKIFLGVDYGQRRIGLAYAASPLFISLPIGFIEAGKTLEATAQS
LAKIILEREVSCVVLGNPIPMQIGQKSSLQEEILKISSLIQEFCHVDVVL
WDERLSSAQAERMLKCDCGLSRKQRKGKTDSVAATLILTNFLESSPSIRF
>gid:915107  CF0997  conserved hypothetical protein
MNATKHSQAIFSNSPIHLLAKLAEDLFSTYQQPFTKRWILVANTEVGHWL
RRELTNATSNHIFMGTTIFSSSDSLVKHLFSEVCHEKPLLPDHITLPLFI
HELLNNTPSPEGISQSSRLFSEPSYSLTKNLATVFKKFFTFSQTPSENNR
YHKHLFSQLDKHFMPTEKIFSSILASLNSEKQNRSLHIFGYSHLPSHFAT
FFTELSQFFPVYFYCFSPSREYFGDLLSDKSIDFLWRQLINQPNRDAWQH
YVLADRQALLANLSHKSQASQNFFLDKEIHYHEAFIAPQETTSLGVVQSN
LFHLRPNVPEDILDKKQTITISKALNPSREVHEVFLKISMLLHKGIRPEE
IFILSSRLENYTVFLKAVFQPHLPLYFTNSTSSQAEDLKEKILLLSSILQ
TQGNLYRLLQLLTHPQLQNPIETSKTPYLLKRLSSEWEKLYKGNGTQIQS
LGDSILDEYPFVEEHGKVSQIEDWERILPLLYDLQKFVNIYTSDAVLTYE
EHCNHILSFLESTFVLSSEELSFIASLRNSLFPAFSSLKCSLTFFTDFCL
DFFSHFCGNSPIYDKPGPYVGSLGDLSLIPKGYTFILGANKQTPTIDLLD
LVDTTTQEELVFSSSEDEENFHFLQTIVSTKHELHISYLSSAHNPVLPCA
YVNYLQDALNLPTTPFPTKAYASSLFADQTLVHTSQEYYYKLAQAFCSTK
KPLPLLFQTPDRSPKLPAHLSVSQILNAIFSPLDFFLKSNYHVSLRPPST
LEAREKLFPTKKQVMLFWENHLSNTSENMSDNYLSSFSKDIFASYDEIIA
KWLENARLNPLTTPYSVIFSSSLFHDHLLDHDQVLPPVSITLNKEDVSLH
GRFSGVFSNGLYLCSIDPAAKTKKTEKKTKSIPENTFELQNLLKAYMAIA
MLQQSQVLSENAIIRNIFSQDAFEDLPLPFSNPQAYLNRVLQVYQLMRDY
PIPLISSDCWKFLDNSEKFHDAVHTAIETDMNNPSLSIFWKFHNCDYLNQ
FSVNEEQRLMILSLFKDAHETV
>CF0862 ada, methylated-DNA--protein-cysteineS-methyltransferase
MSENLYLVSDDSKFSLSQACSQGLQIAKYPPLQVIVHFQNNTVIKTQLSI
APVFSCLFLGPGSHKAMEEIVLLCAKYSQKIAIPQSSYINTSVLSGQQET
ILNSVAQIPFGQTRTYKDIARETDTHPRTVGSACKNNPFLLFFPCHRVIG
SNGERHYCAGKQIQNILLNFEESLS
>CF0534 dnaA1, chromosomal replication initiator protein
MRAWEDFLLLQEKEIGTSTVDKWLRSLKVLCFDACNLYLEAKDSFQVTWF
EEHIRHKVKTSLVNNNGKLIRVHITSVDKTTSFYKEKQMQQEKTAYFTMQ
YGNVNPEMTFANFLVTPENDLPFRILQEFTKPAEDSSGFPFNPIYLFGPE
GSGKTHLMQAAVSALRESGGKILYVVSDLFTEHLVSAIRSGEVQRFRSFY
RNVDALFIEDIEVFSGKGATQEEFFHTFNSLQMEGKLIVISSAYAPADLK
AMEERLISRFEWGVAVPIHPLTKEGLRSFLKRQAEQLSIRIEDTALDFLI
RALSSNVKTLIHALTLLSKRVAYKKLAQQLLYEDDIQSLLHDILEAAESV
RLTPSGIVRAVAKYYGVSPESILGRSQSREHVLPRQVAMYLCRQKLSLSY
VRIGDVFSRDHSTVISSIRAISQKVEEGGHDIGIATQDLMKYLTSAYKSL
EFFPEEEIPC
>CF0639 dnaA2, chromosomal replication initiator protein
MLTCNNCSTWEQFVNYVKTRCSKTAFENWISPIQIIEETQEKIRLEVPNI
FVQNYLLDNYKQDLCSFVPLDAQGEPALEFVVAEIKKSPVQPVAPREQKE
SPAETFEGSKDFELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSYN
PLFIHGGVGLGKTHLLHAVGHYVKEHHKNLRVHCITTEAFINDLVQHLRL
KSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLINLNKQIVI
TSDKPPGQLKLSERIIARMEWGLVAHVGIPDLETRVAILQHKAEQKGLHI
PNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTESIVRDTLKELF
RSPSKQKVSVESILKSVATVFQVKLQDLKGNSRSKELVLARQVAMYLAKT
LITDSLVAIGSAFGKTHSTVLYACKTIEQKIEKDETLTRQISLCKNHIVG
>CF0882 dnaB, replicative DNA helicase
MTHDLDCIIKTMSTQIQKTPAPALPSPPNSKESEMIVLGCMLTGVNYLNL
AANQLNEDDFYYLEHKIIFRVLQDAFKHDKPIDVHLAGEELKRRNHLTVI
GGPGYLITLADFAGTAAYIEEYIQIILSKSILRKMIQTAKEIEKKAIEEP
KDVAVALDEAQNALFKISQTTSLTQYVLVADKLQGLVSAQEKPFLVQLQE
KQEFFQQHAQSGDALPISGIPTHFLDLDKMINGFSPSNLMILAARPAMGK
TALALNIAENMCFQSRLPIGIFSLEMTVDQLIHRIICSRAEVESRKINVG
DLSGQDFQRIVSVVNEMQKHTLLIDDQPGLKVTDLRARARRMKESYDIQF
LIIDYLQLLSGSGTLRSAESRQTEISEISRMLKTLARELNIPILCLSQLS
RKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPHDKPGTAELI
VAKNRHGSIGSVPLVFEKELARFRNYAALEFNG
>CF0931 dnaE, DNA polymerase III alpha subunit
MTWIPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEF
YKECYQQDIKPIIGCEVYVAPSSRFDKKKEKKSRVANHLILLCKNEQGYR
NLCLLSSLAFTEGFYYFPRIDRELLSQYSEGLVCLSACLSGSVAQAALES
EEALEKDLRWYQSLFGEDFYSEVQLHKMSEEKIASLGEEWLKHEYHQFIE
TQTKVNQAVLETSKRLGIRSVATNDIHYIHPEDWLAHEILLNVQLGETIR
IAKQNTYIPNPKRKAFRSREYYFKSPKEMANLFADHPETISNTLEVADKC
NLKLDFSVKHYPIYVPEFLKEKQTYTEEERYTASSAFLRELCEKGLLKYT
PDKLAHISKKFPNRDPLELVKERMEMEMSIIIPKGMCDYLLIVWDIIHWA
KAHGIPVGPGRGSGAGSVMLFLLGITEIEPIRFDLFFERFINPERLSYPD
IDIDICMAGRERVINYAIERHGKNNVAQIITFGTMKAKMAVKDVGRTLDV
SLSKVNLIAKHIPELNATLSKALETDPHLNQLYADDAEAAQVIDMAMQLE
GSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKPVESVGML
KVDFLGLKTLTSIHIAIQAIQKKTGKLLEMATLPLDDKTTFSLLHQGKTM
GIFQMESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGK
EVITYDHPLIESILKETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMG
KKDINQMLQERTKFCERACKNGIDADLATTIFDKMEKFASYGFNKSHAAA
YGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVGKLIHEAHSMNICVLP
PDINESGTNFVATDKGIRFAMGAIKGIGKGLVESIIEEREKHGPYQNIQD
FLKRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQAVLESIYESISKEKK
EAATGVMTFFSLNTMLKEQPIVLTPTTHIVRRQKKEILKKEKELLGIYLT
EHPMDAVKDILPRLSVVSPGEFESLPHGAVIRTIFIIDKVTTRISSKGQR
KFALLRVNDGVDSYELPIWPEIYAEQQELLEEDRLIYAILSIDKRSESLR
LSCRWMKDLSLVNEDLLKECDDMFDKIKSQMQKMSYLNSETLKDSNQRKT
PTMSKTTDNGSPVSTVKLSLDLGQLRHSHLCMLKQIIRKYPGSRTLSLVF
TQNNERVATISPDADYFVSDDISGLQKELESSQLPVRLVAV
>CF0186 dnaG, DNA primase
MYTEESLDNLRHNIDIVEVLSEHLHLKRSGATYKACCPFHVEKTPSFIVN
PTCAYYHCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVVEVKD
TQTSFPIGAKDELRQINHEAENLFRFCLYQLAEGREALQYLYRRGFSPDT
IDRFHLGYAPEQTLFVQAMREKNISEKQLESAGFIGNKWFLFSRRIIFPV
HDSLGHTIGFSSRKFLENTRGSKYVNTPETIIFKKSRALFGLHLSRRRIA
KEKRVILVEGQADCLQMIDSGFNCTLAAQGTSFTEDHVKELSKLGVLKAY
VLFDGDDAGIKAAIRVGDMCQTVGIAVMVCRLPQGEDPDSFLRHKGAGPL
GELLDQSEDYLTFLISEKIRVYPNFSPREKALVIEETITQIKKWGNPIVV
YEHLKQLASLMMIPESMVFSLAKLESGITPATVLATSKAKLPKIHPDVII
ETDVLRCMLFCKAHNTSLPYTAKNYFTPKDFKHPECRKLFSRLIEYYEKH
QSNLPFDEALSLLEDKVIIELLIKRRMNTDCLETVFIQSLQKLADRQWKE
QRHPLSAQSKNSQGHQLSILEDYVRLRKDRVIVSLLDPQDSQPCII
>CF0562 dnaN, DNA polymerase III beta chain
MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLT
VSTRCVAQAKVYESGAISIPSKRFFQLVKELTEANLEISATTGEMAKITS
GSSCFRLLSMGKEDFPMLPDIQNSIRFTLPAEQLKEMLQRTSFAVSREES
RYVLTGVLLTIADGMVTVVGTDGKRLAKTDTEISLDKSFAGDYIVPIKAV
EEMIKLCSEDSEATIFLDQAKIAVECGNTLLITKLLSGEFPDFSPVISTE
SSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTANCTKVGE
GKVSMAVNYSGELLEIAFNPFFFLDILKHSKDELVRLGISDSYNPGIITD
STRSLFVIMPMRLHDD
>CF0624 dnaQ1, DNA polymerase III epsilon chain
MTALIFYDTETTGTQIDKDRIIEIAAFNNVTKESFVTYVNPKIPIPEEAS
KIHGITTSTVASAPDFPEAYKQFRDFCGNEAVLVAHNNDGFDFPLLEKEC
RRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVYGFAENQAHRALD
DVITLHDVFSALIGDLSAEQVLALMEESCHPKTFKMPFGKYKGKPLTEVP
ASYIQWLENQGNLDKDMKAAIDLMKQMT
>CF0921 dnaQ2, DNA polymerase III epsilon chain
MTLLKDTIFVCLDCEMTGLDVKKDRIIEFAAKRFTFDNVIDSMETLINPD
RVISAESQRIHRISDAMLKDQPRISEVFPKIQAFLKEGDYIVGHSVGFDL
QVLTQEAERIGETFLSKYCIIDTLRLAKEYGDSPNNSLEALAVHFNVPYD
GNHRAMKDVEININIFKHFCKRFRTIEQLKQVLSKPIKMKYMPLGKHKGR
CFSEIPLSYLQWASKMDFDADLLFSIRHEIKHRQKGTGFTQVNNPFIGL
>CF0499 dnaX1, DNA polymerase III gamma/tau
MQITENVINEPWEVLLDSVNQGKIPHAILLHGNSLTMLSQYAYNLAANIL
VKEFPEAQYKISKKIHPDIHELVPEGKGRLHSIEVPRDIKRQIGVLPYEA
SYKIYIIHEVDRMTLPAISAFLKVLEDAPPHSVIILTSTKLQRIPATILS
RSFSLYIQGEEHRDPNKEDVAYLLKYASGKMKITEAGQIVKGGADADKQM
LRDKAKRLLEVLLMLFRDRFMLSLNMSASAMTYPQYAKDILNLPALPLEK
VLIVIEKAYRSLDNSSSATSCMEWVALQLASLSHRSSMLV
>CF0671 dnaX2, DNA polymerase III gamma/tau
MTPATYQVSSRKYRPQTFSEILGQDAVVTVLKNALQFQRVAHAYLFSGIR
GTGKTTLARIFAKALNCTEPTANNEPCNRCCICKEISSGTSLDVIEIDGA
SHRGIEDIRQINETVLFTPAKSQYKIYIIDEVHMLTKEAFNSLLKTLEEP
PSHVKFFLATTENYKIPGTILSRCQKMHLKRIPETMIVDKLESISQDISL
ETSREALLPIARAAQGSLRDAESLYDYVIGLFPKSLSPESVTDALGLVSQ
DTLCNLAECIRTQKYVDALLPITTALNSGVAPTAFLHDLTVFYRDILLSK
DQENSPLAATAKLYSRECLLEIIDFLGESAKHLQQTIFEKTFLETVIIHL
IRICQRPSLETLFSQLKASAFDAPRNTSQQQEQPKPIIQPEKRYEEQSFL
SSSSKSSDPQDLPKKEASTSLVGSATIDTLLQFAVVEFSGILTKE
>CF0387 dnlJ, DNA ligase
MHNMYTREQYLALCKDIEEDDYRYYVLHDPIISDYDYDMKMQKLLSIEAQ
HPEWRVLWSPSMRLGDRISGSFPVVTHSHPMLSIANAYTLEELNDFFSRV
EKTLGYTPTYTLELKIDGIAVAIRYEQRVLVQALSRGNGRQGEDITTNIR
TIRSLPLRLPKEAPEFLEVRGEVFFTRATFEQINSIQRQSEKPEFANPRN
AAGGTLKLLSAKEAAQRNLELSIYGAWAEENTESHYDNLMLCQKWGFPVF
GRPRQYKSVEEVVKALHEIAKIRDQLPMEIDGVVIKVDNTEDQKVLGMTA
KHYRWALAYKYAPEQGETILEDILIQVGRTGVLTPVAKLRPVFLSGSKVS
RASLYNEEEIERKDIRIGDTVYVEKGGEIIPKVVGVCLEKRPEGTKPWVM
PEYCPVCHERVSRESDKVSVRCTNSSCSAGTIEKIRFFVGREALDIEHLG
EKVITKLFDLGLIHRRCDIFQITEEDLLQVPGFKDKSIKNVLKSIEKAKS
APLERFIAALGIPYVGIGGANALAQHFLSLDAVMSASLEELKVIDGIGSK
VAESIVDYFHQSDNVEEIQKMLSLGVNVLPYSRASASCQGKTFVITGSLE
KMTRSEAEASIRNCGGKVGSSVSKSINYLVVGKDPGSKLKKAQELQIPIL
NESDLLKILYPN
>CF0979 gyrA1, DNA gyrase subunit A
MQDVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMDDGK
MHKVANIAGRTMALHPHGDAPIVEALVVLANKGYLIDTQGNFGNPLTGDP
HAAARYIEARLSPLAKDILFNTDLMSFHDSYDGREKEPDILPAKLPLLLL
HGVEGIAVGMTTKIFPHNLYELIEAQIAILNNRTFTLLPDFYSGGVMDAS
EYQDGLGSITIRASIQIVDSKTLIIKEICPSTTTETLIRSIENAAKRGVI
KIDSIQDFSTDQPHIEIKLPKGIYAKDILEPLFQYTECQVVLTSKPTAIY
NNKPVETSISEILKLHTEALEGYLQKELQILHDELAQEHYYKSLEYIFIK
HRLYDIVRELLSKLGNKVSQEDLHEAVLASLAPFISSLPEAPCKQATSQL
ASLAIKKILCFNETSYTKDLEGIKKKQTAVKKDLSNMKKFTIKYLKGLLA
KYGELGKRKTQILSFSNQKKSVLKQQTLV
>CF0501 gyrA2, DNA gyrase subunit A
MFNKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILF
AMKQLNLTPGAKHRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRY
PLVDGQGNFGSIDGDPAAAMRYTEARLTHSAISLMEDLDKDTVDMVSNYD
ETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELIEATLLVLSK
PDASIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKLRARLHIEE
NADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDG
IRVVLELKKGESSEIVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRM
ISAWIRHRTEVIRRRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNS
DSKEHAKHQLIENFGFTEQQSVAILELRLYQLTGLESEKIQKEYDELINK
IAYYKRVLADEGLVKDIIRNELQDLQKLHKTPRRTTIEFDADDVRDIEDI
ITNEPVIITISGDDYVKRMPIKVFREQKRGGHGVSGFDMKKGSDFLKSVY
SASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIRPGEQL
AAVLNIKNFENAGFLFLATKQGVVKKVSLDAFSNPRKKGIRALEIDEGDE
LIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEK
DRVVACQIVKDDQSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINER
NGDVLGAISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVLVKD
GDTLVAMEKLSLNGEETLSGIEEESTSPQV
>CF0978 gyrB1, DNA gyrase subunit B
MATYTEASVVSLASLEHIRLRAGMYIGRLGDGSQIEDGIYTLFKEVVDNA
IDEFIMGHGKTISISTNATTITVRDSGRGIPLGKVIDCVSKINTGAKYTQ
DVFHFSVGLNGVGLKAVNALSETFTVRSVRKKQYHYATFCKGILQNSHQG
STKDPDGTEITFSPDATIFTNFSFNDEFLRKKIRRYTYLHPGLEIICNNE
VFLSQQGLLDLFKEEVPEDTLYPPITFQNSELSFLFTHAETHNERYFSFV
NGQETIDGGTHLAAFKEAIVKGINEYFGKSFASNDIRNGLIGCIAIKIAS
PIFESQTKNKLGNTQIRPGIIKDVKSAIIQELKKNKPYADLLLNKIKLNE
KTRKNIQFLKQDLKDKQKKLHYKIPKLRDCKFHYNERSLYGEASSIFVTE
GESASASILSSRNPLTQAVFSLRGKPLNVFSLEEEKMYKNDELFYLATAL
GITKNSTQLLRYNKIILATDADVDGMHIRNLLITFFLKTFLPIVENRHLF
ILETPVFKVRYKETTLYCYSEQEKTDAIRKLRKKETALEVTRFKGLGEIS
PKEFKTFIGADMRLTPVTINALESVETLLQFYMGKNTKERKQFIMDNLIT
NL
>CF0502 gyrB2, DNA gyrase subunit B
MDAKEKSYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSI
DEAMAGYCSEIHVRILEDGGITISDNGRGIPIQVHEKESKKQGRDVSALE
VVLTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALAKKLVATVYKDKQTYQ
MEFSRGIPLTSLQFLGATDKQGTEITFYPDDKIFSSCIFDRSILIKRLRE
LAFLNRGVTIIFEDDRDVSFDKVVFFYEGGIQSFVSYLNQNKESLFPEPI
YIAGTRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFST
ALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTK
QKLGNSDVGSVAQQITGEMLTTFFDENPQIAKMIVEKVFIAAQAREAAKK
ARELTLRKSALDSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRD
HRFQAILPIRGKILNVEKARLQKIFQNQEIGTIIAALGCGIGSDNFNLSK
LRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYIAQPPLYKV
SKKKDFRYILSEKEMDDYLLTLGVEDSTLVFKNSGREINGEALDNFVKLI
LNIENFIVALEKKAVPFSEFLEMHKEVSGYPLYYCPPQSGKQGGRYFYSS
EEKENEVQLNEDVDSVKVVELYKTSVFAEIQEELRDYGLDIRHYLNPKDS
EMVITNEDSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQL
WDTTMNPEQRTLVRVSLKDAVEADHVFTMLMGEEVPPRREFIENHALSVK
MNNLDI
>CF0630 himD, DNA-binding protein HU
MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDF
GVLQVVERKPKVGRNPKNATVPIHIPARRAVKFTPGKRMKRLIETPSKHS
>CF0458 incA1, inclusion membrane protein
MSAPVENPSPMLSQVPDIRSGEREIQERNTGTTLVPGHSQTTTTLAKRTP
VSEKGTFLQRALHFMKIISAVALLAVGIAALICLQFGVVVSTSSLILMIA
ILLVSFIVVIIAIQGSLPSQIARQMKQQVQQLGQENDRLHAEVDTLQQAN
VELSEQITQLQHLHTKLSDFGDKLETHTGDFRDLIVDFKNSLEGFKSIGD
KIENFISPFEKLAKSLHDTFSKEGVQELVVSVGALRDSLGNFKGLIEENK
LILAQMKEDAERRKTQIRFLESRKQELEQVCSTLTASIASLRTSTENLKN
VEGRITNSIANDRGASPSSTTVSAETDLDVSGDLEDNSDQQEDESQL
>CF0767 mag, 3-methyladenine DNA glycosylase
MLPESFFLNDDVLYLAKELLGHSLVTQIEGKTTSGIIIETEAYRGPDDKA
CHAYNYRKTQRNLPMYSRGGIAYIYQCYGMHALFNVVTGSQNLPHAVLIR
AIAPQKGEDIMIQRRQWQNKPKHLLTNGPGKVCQALNLTLEHNTQSLTSP
QIHISQKKISGTITQTPRIGIDYAEEYRDLPWRFLLNIKKSKKI
>CF0139 mfd, transcription-repair coupling factor-superfamily II helicase
MAMDFDPVKLNLSSLFEIINTSTPLLIENIRPGARGFLAAKFFHERKKSV
IMITTRSCIDDLLEDLSSFLGFPPLEFPSSEIDLSPKLVNIDAVGKRDKI
LYELCEKKSPVFCVTTLKALLEKTRSPKDTVHQHLDIQVGDLLDPDMMID
LCKNLGYRHETLARDKGEFAYRGGIIDIFPLSSQEPFRIEFWGEKIISIR
PFNPSDQLSTGKVSKLSISPATKDSGKEVLSHCLLDYFHTPPAFIFDNLA
RLEDDFSEISGTLSSLPNRFLPIQYLCERALQSPTIFFEEKNFPNAHTVK
NNEVNIEVFHRDVKASRLVAPFVYPNETIDKHENPPLGFLQKLQEYIPNK
EPLNIAVYNTKSKSLKEARALIETLEENSIHIYEKSGNLSSSFALVKERF
AAISLSEFTSTKILRRQKQRNYFSVTTEEVFVPIPGETVVHLHNGIGKFI
GMEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGTSEKTPDLH
NLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTAPSFIYPPHGEEVMKF
AERFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAV
KAVCDGHRQVIVMVPTTILANQHYETFSQRMAGLPIKIAVLSRFSEGKAK
KKIFEDTAKGDVDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFL
KERYPMVDCLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFILE
HNDETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRTLVPEARIAVAH
GQMSSDELASIFQKFKDQEINVLVATALIENGIDIPNANTILVDQADKFG
MADLYQMKGRVGRWNRKAYCYFLVPHLDRLSVPAAKRLEALNKQEYGGGM
KIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNTSPA
LFNDDVKIEFPYKSRIPDTYIDLASMRIEFYQKIGGAEDAEQLDLIKEEM
RDRFGPLPDEVLWLFALAQLRLFALKHNISSIKGTGNALYIQQNHGKTEQ
IKKTLPYSLSPTPELLVSEVLESIEKAFPLNTPC
>CF0217 mhcB1, myosin heavy chain form B
MRCIPACLTPISAINSCLVKANSPRACLVVNVFSLFLSLLIVVTGITALA
FFSVELGMLHSVILSLCILAALFSLAISTYSIAHRRTSSCMSVLQKQELQ
QEMSRPPSLSHTRTDEISEDQNFENQKIQEMERENQRMSSRILELESQVL
SQKEDQGRIRGFERIDPSSELNVNKERCAFESRIRDLEEALAKSESLSQE
RSSAAETRLGELQTERSQFLGRISELEISLVNRDYQITLCTNLEKQLEEK
TEKIQQLEILRMQVLEEVQKLQKSLDQEEANSSILARKSEQIRVSLERDE
LRVQRLHLESRVVLLEVSESIASKFSLDIEKSNAETQTAEINQEQQEAQK
QILRLREELKEKEEKISSNASEYQRIQSRCEKEIAQLKQSQAEALERVRG
LEQDLLDADNEKQSFVQDFTDKCGEYEEKIAKLQNRCVDFENSMSDLQRD
LLGENRNQESTDRSLITDLEGRIADLQEENQKQEMKIQAFDKQLLERSNE
KTRIQKTVRAQIKAQVDKRKAAEKELGESEAKLQQLEAQIQHLEDGRGPS
MSALQERVRTLYQEAHENNIFISNLKKCNQQLERQVLTFVNQKPLFLASN
SVKEGNVAKLEGYRQEARTLLSADAQDRTLMAKDRISRLEKLCKGSDLKD
EVDELAELSEDRLNHKAIFQLESKMFNLLQQNSSSASGRNRVESLRALRL
QQYCDGDAGLEARVREFNFPKGSPINSSELYELEQEIFDIREAKIFTLRE
GLEGANERLIIAELKIKELTDILRAHEEALSPNTKEKRSLEEQQTLLQVG
VDLRKQLDANRSELEVYKNRFLEIQREFLKISLENQAKDLALKVAENKLK
QFEKKQ
>CF0063 mutL, methyl-directed DNA mismatch repair protein
MPSRPLIQLLDTTTINQIAAGEVIENSISVVKELVENALDAGADEIEVET
LGGGQGLIVVKDNGCGMSAEDVTLALKRHATSKIGEFSDIFSLSSFGFRG
EALPAIASISKMEILSCPRIGEGSRTIIHGGEIIASEAKPRQLGTTISID
SLFYNVPVRRGFQKSPQADRIAMRKLLENRILSIEGVGWSWVSERQQEFH
ILKHRGFAERVGFVMGEGFMQEALRVDSGERPVCVRGFLGSPGFHRPTRS
GQRVFINDRPVDSVFISKQIREAYSMLLPPQRHPVFVLKLYLPPEWCDFN
VHPQKTEVRILKEEFVGEFLSESIGEVLARPQESSVSEKTIFSLPALRFF
DEHLAERSSVEPLESISLPELSIPPKVPLPFLDKGQDIPTTDGQMQIDWG
VSQEVRFLTSLGKIVLAEDSEGVHAIFTEAARKHLFYLALTENQQYNYKS
QSFLVPLCLEVTPQEGIFLSSHVEDFKQLGIELSQMGPCIFAIDSAPTFI
GEEELKSWILFLAAESHAKVDRKAVALLIKETLTQTVFCKTLRPFDISWL
SLLWQIGKPEKAFDGTQIRRLVLDEDFIKE
>CF0185 mutS, DNAmismatch repair ATPases
MTSKKLTPMMKQWHQCKEQAGESLLLFRMGDFYEAFYEDAVLLSQHLDLT
LTQRQGIPMSGIPVSTINGYIDRLVSKGFKVAVAEQLDEVQDGKGKSEPL
SRELQRFITPGTLLSSSLLPEKAHNYIVSINRVGALFGFSCLDFSTGSFL
LQEYDNKKDLIDEICRLAPTEILSCDKFYKKHSDVIEQLLQHLKLTLSTY
SDWAFEHQFATQKLSAHFKVSSLDGFGLKGLVPAINAAGALLSYLQDKLL
LPIEHISIPKTHGNQKYLLVDTASQVNLELLAPLHDPQGKSSLLHVMERT
CTPMGGRLLRNTLVSPFYDQKEILLRQDAVEFLLNRSELRKNLRSFLSQV
RDLERLTTRVTTSLASPKDVGMLRDSLHASIRVFEVLSPLPLPEFFQGKF
IPTIGLASLLDLLSKALLGELPLRISEGNIFSDDYHPDLKRLRYTRENSK
EWLWDYQETIRKQTGVKKLKVCYSQALGYYIEVSSDLAPLLPKEFIRRQS
RLHAERFTTEKLQEFQDDMLHVSDKLQMLETELFKDLCSRILEQREAILS
LSQVIADVDYILSLADLAAEHNYCRPVVDSSDSLAILGGIHPVAQTLLDR
GTFIPNDIKMHSTRTRMILITGPNMAGKSTYIRQIALLVIMAQMGSFIPA
KSAHIGMIDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVIL
DEVGRGTSTYDGLAIAQSVVEYLLFTEGKKAKTLFATHYKELTDLEKHCP
HVENFHAGVKENGGQPVFLYEILKGHSQRSFGIHVAKLAGFPLCVVSRAQ
QILRQLEGPEAASRQNQEKVQQLTLF
>CF0164 mutT, NTP pyrophosphohydrolase including oxidative damage repair enzymes
MMKTKYEYSFGIIPIKFFGTPDKSTLKACFICHTQGKHWGFPKGHSEDKE
GPQEAAERELVEETGLSIVNFFPKVLVEHYSFNDNEVFVRKEVAYFLAEV
QGDVHADPEEICEAQWLSFQEGMRLLSFPELKDIATEADKFINNYLFSR
>CF0616 mutY, adenine/guanine glycosylase
MAKIAFSERAKKFPVEKLKQWFIDNKRSFPWRDDPSPYNVWVSEVMLQQT
RAEVVVKYFLEWMKRFPTIESLATANEEEVIKAWEGLGYYTRVRNLLLGA
RMVMKDFGGKLPDDPLDLMQIKGLGPYTVHAILAFAFKRRTAAVDGNVLR
VISRVFLIDASIDLESTKTWIFRITLSILPVKDPQVVAEALIELGACVCK
RSPKCEICPLNSVCGAFKEKKQKSLPIRHARKKVVSLFRWVAIILYEDFI
VLEQRKPEEMMAGLYEFPYIEVGSLDDLADINALVQEMECYVGSSLIFCG
ELEEQRHSFTHYKVRLIPKIFYARSKPKSELLYPLNTIDSLPFSSGHRKI
KDWLLENPCVISNPELVKV
>CF0993 mviN, virulence factor mviN
MIPGRLFYSLKCLTPLILNLSIPDRDFRSIKMQIYPPPQEPLLGAHTSTS
GGLQNAIYEGQEIGASTIQMFTANQRQWRRRPLTDTMVNSFKQALEETSL
SYIMSHAGYLINPGAPNPEILEKSRICIQQEIQDCISLGISFVNFHPGAA
VNDTKEACLDRIVSSFSLVEPLFEDSPPLVVLFETTAGQGTLVGSNFEEL
GYLIDKLKHKIPVGVCIDTCHIFAAGYDITSPDSWKQVLRNFDDHVGLSY
LRAFHLNDSMFPLGQHKDRHAPIGEGDIGIESFKFLMTDKATRMIPKYLE
TPGGPDLWAKEISLLQSFQK
>CF0085 nth, enodnuclease III
MENKTDVKNFILSTLNDLFPDPKPSLTGWETPFQLLIAVLLSGNSTDKAV
NSVTPKLFAIAPDAQALAQLPLKKLYSIISPCGLGERKSEYLHNLSKILL
ERYHGEPPASLDLLTELPGIGRKTASVFLGIIYKMPTFPVDTHILRLSQR
WGISNKRSPSAAEKDLVLFFGDANSSKLHLQLIYYARKYCPALHHSVNKC
KICAYLQKHRKK
>CF0878 polA, DNA polymerase I
MRKIFILDASGFVFRAYFALPDMKNSSGKGTQAVFGFIRSINKLIKEFSP
NHMVAVFDGPNNKQSRREIYADYKSNREKKEEDLYQQIPVVKEYCNLLGL
SHLEVEGVEADDVIASVSKLAIAEGYEVCICTADKDLLQLVSPNVVVINP
WKDQPPIDENGVVNIYGVPPCRIPDYLALVGDTSDNIPGVSGCGPKKAAA
LLQKYHSVEGILEHLDELTGSTHKMFSEQKDILLLSKDLAVLNNNVPLPT
EIKDLEFPMHEIRQEEMNAFYMRQGFKTLVQQVEEASNVYVEVINNSENL
IEVLPTLHGKKVPFSVGYKGSFLPSLSLMGVALACDDSVYYVDVENATDD
VIKPLKDFFGRKDTEFYGYNIKRDSHALKNAGIHVNNIALDLALAEHLIN
GGAKISYQTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPAQYFGEFVS
HLPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGMPLDVEDLQN
LEKILSEELAILADDIYALAGSPFNIKSPKQLAEVLYNKLGLTPVDKARS
TKAEVLEAMTGEHDVIEKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPT
FNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTHQNTYFLSADYS
QIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQA
KTVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPDVARFINETVS
QACENLRVKTLLGRERIIDNWTEFSNSRAASGRLAVNTRIQGSAAELIKL
AMLQLSDALEKRKLRSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAM
ILSVPLVVNILIGKNWAEC
>CF0171 priA, replication factor Y superfamily II helicase
MGNIEPTTFRLYAEVIVNSSINRVLDYGLPENLEYITRGTGVSVSLRGAK
KYGVVHRIKTKTECKRVLPILDVIGSGIVLPQDLLDLMFWMSQYYFTPLG
KTLRLVLPGISSSIIQPKQHYRVVLKQSKAKTKEMILAIQKESPSQAITL
KTLLSCSSPPGLSELMDKAKVSQSPIHSLEKLGVLEIINAADLEIQEDSL
TFFLPDPHPLHPQQKSAVDKISASLSVGNFQTHLLFGVTGSGKTEVYFQA
IHEARKLGKSAILLVPEIALTIPTVTLFKAHFGKEVGILHHKLTDSDRNK
TWRAASRGDINIIIGPRSALFCPVQNLGLIIVDEEHDPAYKQSESHPCYH
ARDVAVMRGKLANATVILGSATPSLESYANALSGKYILSELSTRAAAALP
AKVSLVDMNLEREKTKTKTLFSQAALRGIEKRLAVGEQVLVFFNRRGYHT
NVSCSLCKHTLKCPHCDMVLTFHKYANVLLCHLCNASPKDPQTSCPKCHG
TMTLQYRGSGTEKIEKVLHNIFPQVRTIRIDSDTTKFKGSHDSLLKQFAT
GKADVLIGTQMIAKGMHFPSVTLAIILNGDSGLYIPDFRASEQVFQLITQ
VTGRSGRSHLPGEVLIQSFLPDHSTIRCAMQQDYPAFYNQEIPGRELCSY
PPFVRLIRCIFMGKCPKTTWKEAHRIHTQLKEKLNAHTQLMQITPCGHFK
IKDVFRYQFLIKSKQVLPVNKKLHEALLSAKLSPKVKFMIDVDPTTTFF
>CF0018 recA, mediator of ATP dependent DNA homologous recombination
MNVPDRKKALEAAIAYIEKQFGSGSIMSLGKHSATHEISTIKTGALSLDL
ALGIGGVPKGRIVEIFGPESSGKTTLATHIVANAQKMGGVAAYIDAEHAL
DPGYASLIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAAL
VPKSELEGDIGDVHVGLQARMMSQALRKLTATLARSQTCAIFINQIREKI
GVSFGNPETTTGGRALKFYSSIRIDIRRIGAIKGNESFDLGNRIKVKVAK
NKLAPPFRTAEFDILFNEGISSAGCILDLAVEHNIVEKKGSWFNYQDRKL
GQGREAVREELKKNKKLFDELEKRILDVTSVPKATVVEEKKEEQSIQPVV
>CF0999 recB, ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta
MKPFDIFNPQTSIHGKYFLEASAGTGKTFTIEQIILRALLEGSVTRTENI
LAVTFTNAATNELKLRIQDNLKRALSQLKSSLSDPSQPLPPYLPEPCDVK
QLYMQIRNALATIDRMAIFTIHGFCNHVLQLHFPDMQITQKNAALTHSQS
IFHHIRKYLSQDLWENVLFPEQFYLLAARYNTNSKHTSFLTDKLLSSYTL
QTFEHLPPKSFTLSSLQTWHNSIRSKIRDIPKEEFLEQLQNYVRSFKKQP
FSIAEDLQLFVRSLYAVETSTQLLSFSKIAETFHPKNRLARYQPCRAFGY
IEETSWLHNTELFCNVDIIFNTLLHDLQSYLKKHYTWWLSPDESILALEE
LLLSSKAEEIIETLRKRFQLVLIDEFQDTDRKQWNIFSKLFANEEFSGSL
FLIGDPKQSIYEWRNADLATYLKAKSTFPKTSQLHLINNYRSIPKLMEAV
NFLFCKCSPFLEIPGYEPIEYHPLSPQSSESFENTQHSPIHFFSYNDVAD
QAAWISQTASYLQSTYAIPLGRMAILVSDSAQAFDLIAHCSIPVSFSKNK
SIFHLTETYLLTLAWLEAILHPESYEKIQRVLLSSLFRHNLPEVIEKKEF
YSTYFFSLRSYIFDHGLLATFYHFMTLQGEALLKTPQGDLTFQEMESLCA
YLGTISSHPQHQLLYLQYFSETGRWEESLSFSSYSEDSEILKITTIHASK
GLEYDVVFCSGLDKSKKNKSASEWIREMYVACTRAKKQLFIPIQNTSSSR
RNTALTNYVKQEGVYKSTSDLAESLSKEHPLLFSLSNTNGVASSASPAYK
ITPPLVFDLSPSPSKQIFSFSSVKLLLDREGSLENDVAEPERSLELPRGR
KTGILIHKILENMAPNFKIPPSKILTTVAHFVKNTHLEGYEETIAQKLFA
TFSSPLSFTTGTFALTDVVPDKIVCEESFLFSHKDQLWQGALDLFFEHKN
RYYIIDWKTSFLGETASAYSQENLLNYIKEQNLDYQGAIYTHAAQRFLQQ
FDISDDVEIGFVFIRGIDSRGNGFLSLPSQKLFNPTINQKYPAYH
>CF0007 recD1, ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V alpha
MFSHLLEDVVRQQIVLPLDLAFARKHISSESKKAFAFLALSSALWRCGYP
FLTIEKDRLFPSVSGISENLFYECFQDLPEDVFSSLFVIENNKIFLRSLY
LVREKLFKKLSLLSQASSRYNIPATNLPNLSSEQNVVFQKALNSCFSLIC
GGPGTGKTFLATQMILALIKQNPKIRIAIVSPTGKATSHIRHILSKYNVS
EENVTIQTIHRFLQEYVYRQCSSVDLLLVDEGSMVTFNLLHSLVNTLSGE
NRNGKIIADNLIILGDENQLPPIGVGAGNPLQDLILRFPERALHLRVSHR
AKTDCVQKFSKAILEKQTIPFTPLPPLYSAVSMIKEEFIKTPSSQTRLCV
LTPMRHGLWGYLHLNNLIFNEIQKTHSDLPIPIMITERYEAWDLFNGDTG
FFSPKTQRLYFPHNRSIDAKEFSYYTYNYAMSVHKSQGSEYDDVIVIIPK
GCEIFDVSILYTAITRAKHNVSVWADGETLNRIIKKPHKYTYGVK
>CF0361 recD2, ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V alpha
MEKISGKLEGVLFEDHDSKETVARIRIPYKGTLVVIKGQFPDFFLQIGMQ
LHLYGKWSENPNLGQYFQVYSCDSQEMRDNRGIINYLTSKLIKGIGPKIT
EKILEKFQNDTAYILDNHPERLIEVPGISKNRCDNLCAQLREQKDLRTTL
LFLQQYDIAIHYGVKIFKKYKEHAIEKICEDPFLLAREMEGIGFKTADLI
ATRLGVPLNSQSRLFAGIQHALEELQEDGHTCYPLQGLAQAVEKLLNQDI
PEKLIQIEEIISQVHLMQEKNILHIQELETTPHVWTKHIYLAEKTVVSDL
KRILFSSRKIRSIDGNKAIQWVENNLNLHLEQNQKEAVRACFSEKIHIIT
GGPGTGKSTITKSILKIFEQVTYKIILAAPTGKAAKRMTEITGKHSVTIH
ALLQYDFKTRSFRKNYENPIDCDLIIVDESGMMDTYLLYHFLKALPDHAI
VIFIGDVHQLPSIGPGNILKDIINSRKITVTKLNKIFRQVHDSNIITNAH
KVNAGEFPILHSESGRKDFLFFQKEDPQEAVDHIVHLVTQFIPKKYHIYP
KDIQILAPMKKGILGIHNLNKVLKSALNPKQATLHGRFHSYAVGDKVMQI
RNNYNKEVFNGDIGYISMINFENKRVVVNMEGKYVVYSFSELDALVLAYA
TSVHKYQGSESPCIILPIHTSHFMMLYRNLLYTAITRGKQLVVLVGTKKA
IAIATRNDKVQHRCTGLGQALEQLTQPNIKLAHFHE
>CF0563 recF, DNA replication and repair protein
MNILSLRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGR
SFRTSHLTEAISFGSAYFFLEMTCEKDGFSHKLSIYVDKHGKKILSDQSP
IKTLSQLIGMVPIVLFSSKDRLLISGSPSDRRLFLNLLLSQCDPQYKHTL
SYYHRALLQRNSLLKTKQISTLSVWDEQLATLGAYLTLSRFTCCEQLNQL
VQKLWNNSLSEHIRIKFKSSLIKQDKLSKESIIEELRKQLTSSLHRDLEL
GSTSVGPHREDFTLMINDLPVSQFSSEGQKHSLLAILRLAECLYIKNIHN
VCPLFCMDDIHSGLDNHRISQLLDLAPTLGQTLMTSTHLPHQTLSKNSRI
FLVNQAQVSIHSHSIIK
>CF0827 recJ, Mg-dependent 5'-3' ssDNA-specific exonuclease
MASKVNSSIPSPIWVYPKQNPILLSVIIKELHLHPIAAQIFVSRGFQTVD
EVRDFLYVHLSNLHDPELLLDMSKAIERLLLAKERNEHIMVYGDSDVDGI
SGVALLVEFLKSIDVRVSYCFLGALLKHSGEPSSLIAKMKEEGISLLITV
DCGITAGKEVSDINKQGIDVIITDHHMPTGKIPHCIATLNPKLKDRAYPN
KELTGVGVAFKLARGVLNALEKKNPSIKVDLKRLLDLVTLGTVTDVGTLL
GENRTMVRHGIKEISKGSRLGLHKLCVFSGVKPSEVTSTDIVLKIAPKLN
SLGRLADASKGVELLLTEDPEVANDIIQYLDKINKERQKIEADVFHDVQK
ILKSNPSIVKQAAIVLSSKEWHSRVIPIISARLAKAYNKPVAIISNQGGV
GKGSLRTIGSFPLLGILQKCSSLFVSYGGHDFAAGIIINEDQIEPFRKKF
IHLVNSSLKKDKAVITLSLDARAEFDEIDHDLLSSIDLFEPFGKGNPVPI
FYTVVRQVRYPKLLPGNHLKLYINHGERNLEGIAFGLGDRIDALKANWNK
PLELAYTPRLSKSSNGGVIHLLVRDFRILPLDKDTVAKF
>CF0524 recR, recombination and repair
MLKYPDYLSKLISFLRKLPGIGFKTAEKLAFELLDWEQDQLEALGKAFSE
LSIARSHCPCCFCLKNFPESQCEFCQNNRDTSTLCIVASPKDIFSLERSQ
VFKGHYYVLGTLLSPLTGKHIEEERMRLLKQRIEFLNPKEIILALDATLE
GDATALFLKQELAYSLASISRLALGLPIGLSFDYIDSGTLARAFSGRNPY
>CF0357 rnhB1, ribonuclease HII
MHTLVEEQLFLSKTIFEEEVFSEGFSIIAGVDEVGRGPLAGPVVAGACIL
PRGKIFAGVNDSKKLSPKERGRMRDILVNDPDVYYGIGVVSVERIDEINI
LEATKEAMAVAIANLPVHPDFLLVDGLHLPHKIPCKKIIKGDSKVASIAA
ASIIAKEYRDDLMRELHQRYPDYGFDKHKGYGTAAHLAALKAFGPCDCHR
KSFAPIRRR
>CF0709 rnhB2, ribonuclease HII
MSTPFVTTLSSSLYGLLKDRLEEKGFILTQPQYTIFQARSPSVMCTLYSS
GKLVVQGKGSKEFIEFFLEPEILLTFTHNRVEADLRPRLGVDESGKGDFF
GPLCIAGVYARDEETLKSLYKTKIQDSKLLNDAQILSLAKTIRSSCTYDV
MILYPEKYNELYGKFHNLNILLAWAHATIIDKLAPRPSGEVFAISDQFAS
SESVLLNALKKKNTDISVIQKVRAEQDIVVAAASILAREAFITTMTNLEQ
RFSLKLPKGASAQVKSVGKSILNSRGKEVLSLVCKTHFKTFNEICDSASA
>CF0871 rrm12, tRNA/rRNA methyltransferase
MKILAGKYKGKSLKTFSNSSIRPTCGVVKEAVFNICSAYVENALFLDLFS
GVGSIGFEALSRGASSVTFVDSSAQAVRLIRANSQLINPDLPITIMKHEV
RSAIQRLAKKDMSFDLIYLDPPYDLEDRYLAAVLRDIVVGKLLDKHGLLF
LENASAEPILVDGLILKRRRKLGGTFLSEYVLEESLD
>CF0886 ruvA, holliday junction DNA helicase
MYDYIRGILTYMSSGTMVIECQGLGFSICASDRWLMELAGLLHREVIVYT
YTVVRETEHVLYGFRSRGERECFRMLISFSGVGPKTGLAILNTFALSKLC
SIARAEDVKALASVPGIGKKTAEKLMVDLKQKLPELLPLDSQTLTSWKPA
KPSCMEDGIQALAALGYPKSSAERMIAEAITELPDNASLAEILPIALKKN
LQGLNKS
>CF0602 ruvB, holliday junction DNA helicase
MTHQVSVLHQDKKFDIALRPKGLREFCGQAQLTERLELFLSAALQRGEVP
GHCLFFGPPGLGKTSLAHIVARTVGKGLVVASGPQLVKPSDLLGLLTSLQ
EGDVFFIDEIHRMGKVAEEYLYSAMEDYKIDITIDSGPGARSISVDLAPF
SLVGATTRSGMLSEPLRARFSFSGRVSYYSDEDLATILKRSSNLLGIDAD
AAALYEIARRSRGTPRLANNLLRWVRDFAQMREGNRINSDVAEKALSMLL
IDDWGLNEIDIKLLTTIIDYYQGGPVGIKTLSVAVGEDIKTLEDVYEPFL
ILKGLLKKTSRGRMVTQLAYNHLKRCSDNLQILGEEK
>CF0887 ruvC, holliday junction nuclease
MTQLIMGIDPGTLVSGYAIILVEQRYKIRAHSYGAIRLSSKDSLTQRYKQ
LFQTISGVLNDITPDAVVLETQYVHKNPQSTIKLGMARGVLVLAAALRDI
PVFEYAPNVAKRAVVGRGNASKQQVQLMVSKMLNIPDVLNANCEDIADAF
ALAICHAHTSSYDFLGVR
>CF0083 snf1, swi/snf family helicase 2
MVLNALAGFRQTAMDYLAANRQDIVLDFSGDCYNIRLPDEDSPEGNWVST
LKFSDADNLTFASCSCPDGDCCVHLMTAFFSAYDAHGWLPLHHKFNSSFW
YALFYKLFMERAHLHADGDKHYSITTSCATVEIAALSPASFTEWLPIVHQ
TPEPTIYTEKTFLQSALYRIAKRFFFFSEDGARLDLIENSQGFPTQFSMQ
WEGISLKGEILDFSTLEDLFPKINFSQTSLPGNYGDFSVTAVRVAPEESK
IYFTMEPVKQDLKNQPVTQIGSVGYIAGTQQVILPAEETSVSLHIISLLP
AELKKQILSLLHYDAEKRPIRYSIHFLRDSSISFSAYLDTPGDLENGELI
YPDFCYVPERGLFTVEGLLSPQISFTIKVDQVEDFLNTKGFLIREPGFEV
FTDQVPEGQLTYNITQQGVLLFHYNTGDPAAIDIHYGPWIYYSGQGFFLQ
RKANLEIQDGLIVDADQIPSFIMKHEVVLRTIPNFFAPTPPLKNLFFEVH
KESKGSGLYLKPVFQGLEEENCRLFGVFLYRENLGFNLLPTPLQSLCSLP
KKVLPEQVPDFIHQNFQNDKLVFADSQLRTPETFELVILSITRPHPSSPL
HLHLELKTNIGSIPLGVVLQALKNKKAFAFTKAGFLNFQHCLFQFLKQFI
SAQKCQIPENTVIATVTDIFKLDALAPLSTHKNINASASDLAFFSQLKAA
CLPPIPQSLFSTDHKLRPYQNSGLLWLWFLYNHRLSGLLCDEMGLGKTHQ
ATALLDIVFQSAEPTERPKFLVVCPTSVLPHWEHTLATHLPTVSIFSFHG
PNKPEHLPPADVIITSYGTLRQNYAKFYKLSFSVTVFDEIHMAKNKNSQI
HKILCRLDSQMKLGLTGTPIENNLLEFKGLLDIILPNYLPSDALFKKLFT
KKNAAEADDEIIPSQDLLLKLTRPFILRRTKKLVLPELPEKVESIIPCTL
SPEQKKLCLSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPA
IFFKNPDKYREHESGKWEAFVRLLHDSLASGCKVVVFSQYIHMIRIIMLY
LEEIGVKYASIQGKSLNRKEEIEYFTTDPECRVFVGSLLAAGTGINLTAG
NVVIMYDRWWNPAKENQALDRVHRIGQKNTVFIYKLMTEDTLEERIHYLI
EKKIRLLDKVISTQDSNILHMLNREDLITILSYKDERNGVEDTIDSISDA
SEEPLI
>CF0096 snf2, swi/snf family helicase 2
MLNFRKLRRDFTANILQDGKELFDQGAVINAKILSMNGESVCIGAQIRGL
YDNVYECEIEVDRSKSDTIDSNCDCSYNYDCQHIVALLFYLEKYFNEMVV
AYSQEANLETNQEINEEVKKELQETFVVAASREEERKDREHQKEILSEYI
HAANVLSANPFFLPQEYLEKNSAELAVLFVSSSDEVFRPNQHVEFQLVLR
LPGRSKPFYISNIKTFLEGVLYQEPIILNGRRFFFTMQSFNASDRKLIDL
LIRYVRYANQAPEEKLLKSAYLTPTSLGVILAKMHEHQMADRGGGQSGEK
ESFSGMFCGNLEEPLYWSVSPAKMKFDLDFFDTPYKAVLMTPLILVDDET
LQPEQAILLESNVPGIIHKNVYHHFALQIRRAHLRSFSRLRDITIPEALF
GSFLENALPVFKEYAEVSNVEVLNSFVTLPYVEDIHGECNISYLDGELEA
KLYFIYDSLKIPAAAFSLKYQDVRAFIREDGILARNLVEERKIIEEVFSG
FIYDERDGAFHVKSEKKIVEFMTETIPNNQHRITFNCPETLSDQFIYDET
VFDLSFREGTEINTYEAELKVNGLLKGISLDLLWDCISAKKRFLELPKKG
RVKTSRRGRSAGSAKLPCILVLDLEKISPVIQIFNEIGFKVLDDFVEKCP
LWSLTGISPELFKGLPVNFTMTDKLAEIQKQIRGEVDFAFQDVPKQIQAT
LRSYQTEGIHWLERLRKMHLNGILADDMGLGKTLQAIIAITQSKLEKGKG
CSLIVCPTSLVYNWKEEFRKFNPEFKTMIVDGVPSYRRRQLADLSDYDVA
ITSYNLLQKDIDIYKDFVFDYVVLDEAHHIKNRTTRNAKSVKMIRSGHRL
ILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRTGNYMGNKTDNM
IALKKKVAPFILRRMKEDVLEDLPPVSEILYHCHLTESQRELYHSYAASA
KKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFAKDVPEPGDSAKY
DLLMDLLSSLVETGHKTVLFSQYTKMLSIIKKDLEASGVRFVYLDGSTKN
RLELVNQFNEDPGLLVFLISLKAGGTGLNLVGADTVIHYDMWWNPAVENQ
ATDRVHRIGQNRSVSSYKLVTLNTIEEKILTLQNRKKSLVKKVINSDDEV
VSKLTWEEVLELLQI
>CF0598 ssb, single-strand binding protein
MFGYFIGYLGADPEERMTSKGKRVVVLRLGVKSRVGTKDETVWCKCNVWH
NRYDKMLPYLKKGSGVIVAGDISVESYMSKDGTPQSSLVISVDTIKFSPF
SRNETRSPSSEDHSSQTSYDNVSVGFEGESLDVEAIADKDMYAGYGQGQQ
YVSEDVPF
>CF0025 topA, DNA topoisomerase I-fused to SWI domain
MKKSLIVVESPAKIKTLQKLLGKGFIFASSLGHVVDLPAKTFGIDIEHDF
EPDYQILPDKQEVINQICKLASSCDVVYLSPDPDREGEAIAWHIANQLPK
NTQIQRVSFNAITKGAVNEALKHPREIDMALVNAQQARRLLDRIVGYKIS
PILSRKLQQRSGISAGRVQSVALKLVVDREKAIEAFVPTEYWNIRVFLQD
PKTSKTFWAHLYSADGKKWEKELPKGKTEDEILLINSEAKAQHYAELLED
ASYRVTRVEAKEKRRNAAPPFITSTLQQEASRHFRFSSSKTMSVAQTLYE
GVELDNEDATGLITYMRTDSVRIDPEALNNVRDYIQDTFGQEYLPKTPNL
YTSKKMTQDAHEAIRPTDIHLSPDKLQGKLTNDQHMLYSLIWKRFVASQM
NPAIYDTLAMTISTNVKIDLRASGSLLKFKGFLAVYEEKIDDDVAEEENP
SLPQLHAQDILDKEKVSAEQAFTKPLPRFTEASLVKELEKSGIGRPSTYA
TIMNKIQSREYTIKENQRLRPTELGKIISQFLETNFPRIMDIGFTALMED
ELELIADNKKSWKLLLKEFWDQFLPVVTTAEKEAVIPRVVTDIDCSACHK
GKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVETPWDSPCPV
CGGEMKVRHGRFGTFLGCLNYPKCRGTISLHKKGEEVETEEPIPCPAIGC
SGKIFKKRSRYNKTFYSCSEYPDCSVIGNTIDAVITKYTGTQKTPYEKKT
TSKKKSTTKASSKTTKTTAKKKKSAKETTKTPKAGSLLIPSPQLAQMIGN
EPVARGEATKKIWKYIKDHNLQSPENKKMLIPDDKFRGVIGPEPVDMFQL
PKLLNQHLFKSG
>CF0029 ung, DNA glycosylase
MQNAFTIDQLPLSWQEQLENEWSQPYMHKLREFLQTEYSRTTVYPAKDNI
FTALKSTPFDAVRVVVLGQDPYPGEGQAHGLSFSVPHGVRLPPSLMNIFR
ELQTDLGIKNTTGCLQPWADQGVLLLNTVLTVRAGAPFSHAGQGWERFTD
AIVTKLIENRSHVIFVLWGNAARKKCDLLFRSTHKHAILAAAHPSPLAAH
RGFFGCSHFSKINYLLKKLERPMINWKLP
>CF0335 uvrA, excinuclease ABC subunit A
MPNLPVRISGITVRNLKNISIEFLPGEIVLLTGVSGSGKSSLAFDTVYAA
GRKRYVSTLPAFFATTLSSLPDPTVENIRGLSPTIAVKQNHFSHHAHATV
GSVTELSQHLALLFSLDGEARDPHTQKVLHLQSKEKILSTLANIPDETQI
SLLAPLIDKSLTSIQECVRQGYTQIRIDGVISSIYPYLSSPINEETPVDI
LVDSFIKKESNNARMKVSLFSALNIGKGHCSINTGTHEEAFSTQVHIPET
QQTYTPLTPQLFSPHSLEDRCVRCQGTGVYITIVDLSLIQNDLSIRENCC
KLAGNCSTYFYHALYQSLADTLGFSLDTPWKDLSPSIQNAFLYGKKHLVL
PVRLFDSTLGKKSLTYKLWRGILNDIGEKVRYAAKPSKHIPEGTTASPCP
ACQGTGLGEYACAATWQGKTFVEFQKMPLDEFFSFTSSINTSSKSVREVL
EGLNNRLSILINLGLSYLTPNRTLATLSGGEQERTALAKHLGAELSGITY
ILDEPSIGLHPRDTHKLIQVIQKLRDQGNSILLVEHDDQMISFCDRIIDI
GPRAGIFGGEVLFNGSPKEFLNSCDSLTAKYLRHELTIEIPEKRPKAKAT
LSLSHATTNNLKDVTISLPLERITAVTGVSGSGKSSLINDTLVPAMERLI
QGEQEPNLYINGGKIERIVHITRDLPGRSQRSIPLTYIKVFDDLRELFAQ
QPKSKRLGLTKGHFSFNLSLGSCTECLGIGSITLDDHNSIPCPLCHGKRF
QSQVLEVHYQGKNIADILDMTAYEAEKFFMTTPHIHEKIHALCSLGLDHL
PLGRPLSSLSGGEIQRLKLTYELLAPSKKPSLYILDEPTTGLHTHDIHAL
IHVLLSLTYQGHTVVIIEHNMHIVKISDHVIELGPEGGNLGGYLLASCSP
EELILLDTHTAKALQPYFKKTKALPKLSEKPKKEHFLRDISIQDAYHNNL
KHIDITFPRNALTVVSGPSASGKHSLVFNILYAAGNIAYAELFPYYVRQA
LIKQTPLPQVESVRGLSPVIAIKKMGIRKNSRNSLASALDITNGLEKLFA
LLGKPHCPLTGALLEKITPQTIVDQLFQEHENSYVTITSPISPEEDLITS
LQTKQQEGYLKLFANNEFYDLEDPLPEILEDPAIVIQHTKISKNHESSLL
SSLTLAFSLSPTARLHIHDQGEVTHLLVFTLGWQDSFGNSYPNITRKLLS
RDHIEGQCQQCCGSGKILKLSLMEHKDKISNYSPLSLFELFFPDSSSKPV
LDLIKELNILPKTRIQDLDTTTLEKLFQGTKAHAGLERILMEHCNLVPSC
PLLHPLIISDTCSACSGWGIHTYAQQVRIGQTSLIDIYLEDTTFLKNFLG
KIHDNQAQPIIQDLQNRLTFINKVGLGYITLGQQQDTLSDGEHYRLHLAK
KISTNLTDIVYLLEDPLSGLHPQDTPTLVQLLKELVTNNNTVIATDRSDV
LQLYADHTVKLGPGSGPQGGYLSPHSPIPIEELEEHRKALPKETLDVRLT
IHNISNLHVQAPIHSIVAIAGVSGSGKTSLLTEGFLKRAQNLIDSGYKHF
SNVLFFDSHPLLSSQRSDIGTYFDITPHLRNFYASLTQAKALNITASMLS
TNTKQGQCSDCLGLGYRLIDRAFYALEKRPCPNCSGYRIQPLSQEVVYEG
KHFGKLLQTPIEDIPEVFPFIQKIQAPLQALIQAGLGYLPLGQNLSSLSL
GEKISVKIARFLYLPPKEPTLFLLDEISTSLDTNKKTQLQQLFRSLVSQG
HSIIYIDHDIHLLKHADYIIELGPGSGKYGGQVLFSGEPKNIASSKKSIL
KTYMQRL
>CF0052 uvrB, excision nuclease helicase subunit B
MTFELRADFAPCGDQPAAIAKLTQGVRNQAQFQVLLGTTGSGKTFTIANV
VANINRPTLVLAHNKTLAAQLYQEFKEFFPNNAVEYFISYYDYYQPEAYI
ARNDTYIEKSLLINSEIDKLRLSATRSILERRDTLIVSSVSCIYGIGSPD
NYASMALELEIEKEYPRSLLTSQLVKMNYQASPVAQRATFRERGSVIDIF
PAYESDRAIRLAFFNDTLTSIEYNDPLTMMPLESVASVIIYPGSHYVTPE
AVREQAIRSIREELEERMLFFHDRPIEQDRLFQRTIHDIEMIKETGFCKG
IENYSRHFTKTPPGSPPACLLDYFPEDFLLVIDESHQTLPQMRAMYRGDL
SRKQSLVEYGFRLPSAYDNRPLTYEEARKYFHNVIYVSATPGEMELNESR
GHVVEQIIRPTGIPDPIPEIRPATGQVDDLLEEIRKRLSKSQEKILVISI
TKKLAEDIAAFLSELDIAAAYLHSGIETAERTRILTDLRLGNIDVLIGVN
LLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAARNVEGKVIFYA
DQKTQSIEQTLKETERRRKIQLEYNKAHNITPQPIIKAILANPIPQGRKQ
ETQDNLKMPLSTKELEKLIKKYENLMQQAAHEFRFDEAAKYRDKMKAAKE
QLLYLS
>CF0184 uvrC, excinuclease ABC complex nuclease subunit C
MHVKDFSPKIIPPSPGVYLMKDSSGEVLYIGKAKNLRNRITTYFQKQGDS
RERIPFLMKKTTDIETILVSNETEALLLENNLIKKYHPKYNVLLKDDKTF
FCLAISLSHPWPRIDAIRTKAVTSSKKQIVFGPYVSAEACQTLLEVIGQW
FPLRTCSNREFSTRKRPCILYEMKRCLAPCVNFCSQEEYAETLEKAVLFL
KGQVSEIIQKLEKSIEKASQEQKFEQAGMYYRTLKLIQQAMVKQHVEKFH
FQNIDAIGLYRKHQETVITVLTIRSGKLLGARHFPFSENAQEDSDLLSSF
ILQYYANQPHIPKEILTPFSLNIPDLPHLLNKEAPPRIRSPKTGYGKELL
NLAKNNAEMHAQTSVQSSVLPYEEMKKILKTQDYPYRIECYDNAHLQGSH
AVGVYIVYENNALSPKNYRTFAISSSAHNDLAAFHEVLSRRFSSTSSPLP
DMIVIDGGRLQYSQAKKTLKKLNLTGIQIVSIAKEASNHSGSLRHEKLFC
DIFPQGIQLPPTSKLLQFFQKLRDEAHRFAISKHRKKRSRDLLLPQEKIA
GIGEVKRKRLLKKFKSWKQVMQASQGELETIPGLTKKDIKQLLAKQAEVI
NLEK
>CF0028 uvrD, DNA/RNA helicase
MLTLELNEAQIAAVTAPLSPVLVLAGAGAGKTRVVTCRILHLIKEGIAPR
EILAVTFTNKAAKELKERILHQCPQVSGADIPMVCTFHSLGVFILRRSIQ
ALNRENNFIIYDQSDTDKLLKQCLQKFNLKKTLSSSIQYHISQAKNRLLY
PEDLDPEEYVDPVVSIYKEYQQRLKETNALDFDDLLFLTVKLFKDFPEVK
KEYSELWKALLIDEYQDTNHAQYMMAQTIAGKHQNIFAVGDPDQSIYSWR
GANIHNILNFEQDYPQARVLRLEENYRSYGNILNAANALIQNNASRLKKN
LRSVKGPGEKIRVFLGKTDKDEAEFVASEIYRLHKRSNIPLRDFCIFYRT
NFQSRTFEDALLRRRIPYEILGGLSFYKRKEIQDILAFLRMFTAKCDVVA
FDRTVNLPKRGLGPSAISSLIDYALTNNLPILEACRNALETHSVKLSKKQ
QEGLWSYLSIFQQLERAYTLPLNEFVIATIRITGYLQVLKEDPDTFEDRK
SNLDELASKTFEWEQQNTEGTLESFLDDLALKSSTDETELIADRVNLMTI
HNGKGLEFRIAFVVGLEENLFPHANSKGNYENLEEERRLCYVGITRAQDL
LYLTAAQTRFLWGTVRVMKPSRFLKEIPRDYLIQVH
>CF0687 xerC, integrase/recombinase
MVSAFYAFLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPIC
LFSKERQETNLPFSLFTKDAVRLYILELMQENKAKRTIKRRLSAIKSFSH
YCLKHRILLEDPTETIHGPRLPKELPSPITYEQVEILMATPDLSKYTGLR
DRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIRGKGKKERIIPITTL
AAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKYLRLSG
LSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKL
KKQTHNESHPHG
>CF0279 xerD, integrase/recombinase
MTSAQFCDNILEQFTLFLSVDRGLSRNSISAYSQDITLFLKISAITSIEE
ISQDSVYLFVQQLHKRQESESTLARRLIALKVFFRFLKETELLDHPPLIE
HPKIWKRLPSVLTPKEVDALLAIPKTSETSPMISARDSAILHTLYSTGIR
VSELCGLCIGDVSDDFLRVTGKGSKTRLVPLGERACKTIDAYLCPFRETF
QKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQITHKQVSPHSLRHAFA
THLLDNKADLRVIQEMLGHARIASTEIYTHVASDTLIENFLSHHPRNP
>CF0696 xseA, exodeoxyribonuclease VII large subunit
MTTSSPPQAVTTLTESIKNLLESNFCHVVVKGELSNVSLQPSGHLYFGIK
DSRSFLNGAFFHFKSKYFDRRPKDGDSVIIHGKLTVYAPRGQYQIVAHAL
VYAGEGDLLQKFEETKKRLAAEGYFALEKKQTLPNIPQSIGVITSPTGAV
IQDILRVLSRRCYQYKILIYPVTVQGATAAKEISRAIEEMNKENLADVLI
LARGGGSIEDLWAFNEEIVVKAIDASSIPIISAIGHETDYTLCDFAADVR
APTPSAAAEIVCQSSEQQIQVFKSYLRYLNAHSQQLLSGKIKQIQQWKRY
LDHVDFFRSAHQSLDYLCLSVERSIQTKLSQYKQRYMQYARWLQSDVLQR
MTYRLHDLWKMIVQAFHNRLTAAKHLCMQKKKNLTFHNTQQFIQKLDLWK
QQLHRALTQRLGYCSQSLTHQQTLLKHFTIKLNQQFTKGKHTLNLLQKRL
TRTFANTVDEHRENYVRSRENLIFSLHHLVERNREKYYTLSKQLTLLNPK
NVFKRGYAMLFDFNENFAIISAKSLHKHSCVRVRLQDGEATLTVTDIQNF
ETQES
>CF0697 xseB, exodeoxyribonuclease VII small subunit
MEEIPFENAMERLEEIVDLMNQPSTSLDSSLKLYEEADALMRICESRIRK
AEDRVRELSERRNETLLSEEESFAH
>CF0043 yabD, deoxyribonuclease
MNLADAHVHLSDDAFVEDANDVIQRAKNAGISLLVNVTTTINELNKSFAY
AERFSDLRFCHVAGTPPQDAHIDIEEHFHYFQGFAQAGKLSAIGEVGLDY
CFAEDDMAKDRQKEVLKRYLSLALEYELPLVVHCRGAFEDFFHMIDQYYH
HDKRSCPGMLHCFTGSLEEARELLSRGWFISISGIVTFKNAQDLRSVVSQ
IPLEHLLIETDAPFLSPTPYRGKKNEPAYITHTIEAIADIHGMDPHELAD
IACSNVVRFLEGHKKG
>CF0494 zip, synaptonemal complex protein
MSTSISRSSSHEEAIEKVSMLKRECQNSRLSRKIVSLTLVATGIILLISG
ILLLTLTITSLPAAFSIALGATVIAIGTSLISFGVAMRLLKRPPTGEGEE
VLAGEIIKVREIAQKKTEESQQQQLKLTESQRQLSEIASQLDTERQTIAS
LRARLSEVEEAQEKIQEENIDFRTRIHDAETSVNQKDLRIRCLETELGTE
KGKVETLKNKVQNLQTGAQDLQALKSDLDRVLTREAEVLQRVTEEHNRER
EQLFLQLEAVTQERNKALEKIATMNEGSSSGLRRRSSSTQSLISSSGARS
SRGTFSSWVKGFQKHKRSSSSETIFSPVLGSDFSSEERARLDSQTTSDIE
EAEETAEEASE