TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-19 01:02:22

Gene list

Applied filters:

COG category: Replication, recombination and repair
Organism: Bordetella avium 197N, 197N

Number of genes found: 119

Free access
Sort by:

 

Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bordetella avium 197N, 197N
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA BAV2215 DNA-3-methyladenine glycosylaseSubName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.21; chromosome CDS2378932 627 - 0.614035
NA BAV1978 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2121432 780 - 0.614103
NA BAV2249 putative DNA-3-methyladenine glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS2426761 693 - 0.617605
NA BAV1591 deoxyribodipyrimidine photo-lyaseSubName: Full=Deoxyribodipyrimidine photo-lyase; chromosome CDS1661542 1224 + 0.650327
NA BAV1524 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; EC=3.1.21.-; chromosome CDS1577127 801 + 0.659176
NA BAV1360 putative exported proteinSubName: Full=Putative exported protein; Flags: Precursor; chromosome CDS1431996 390 + 0.682051
NA BAV1283 putative phage methyltransferaseSubName: Full=Putative phage methyltransferase; Flags: Fragment; chromosome CDS1373403 1034 - 0.615087
NA BAV1068 uracil-DNA glycosylaseSubName: Full=Uracil-DNA glycosylase; Flags: Fragment; chromosome CDS1141470 621 + 0.655395
NA BAV3162 conserved hypothetical proteinRecName: Full=UPF0102 protein BAV3162; chromosome CDS3437587 438 + 0.712329
NA BAV2808 putative excinuclease ABC subunitSubName: Full=Putative excinuclease ABC subunit; chromosome CDS3037588 5703 + 0.636332
NA BAV1176 putative methylaseSubName: Full=Putative methylase; chromosome CDS1256384 1608 - 0.656095
NA BAV3038 putative NUDIX hydrolaseSubName: Full=Putative NUDIX hydrolase; chromosome CDS3302730 966 + 0.6853
NA BAV0386 restriction modification system, specificity subunitSubName: Full=Restriction modification system, specificity subunit; chromosome CDS396052 1239 - 0.51251
NA BAV1629 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1701792 507 + 0.646943
NA BAV1370 putative radical SAM proteinSubName: Full=Putative radical SAM protein; Flags: Precursor; chromosome CDS1442349 1587 + 0.623188
NA BAV0564 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS587746 621 - 0.642512
NA BAV0913 putative nuclease/helicaseSubName: Full=Putative nuclease/helicase; chromosome CDS967254 3324 + 0.667268
NA BAV0387 restriction-modification system, modification (methylase) subunitSubName: Full=Restriction-modification system, modification (Methylase) subunit; Flags: Fragment; chromosome CDS397292 2775 - 0.564324
NA BAV1287 Putative phage recombinaseRecName: Full=Recombination-associated protein RdgC; chromosome CDS1376241 903 - 0.624585
NA BAV1791 integraseSubName: Full=Integrase; chromosome CDS1881450 1113 + 0.672058
NA BAV0385 restriction-modification system, endonuclease subunitSubName: Full=Restriction-modification system, endonuclease subunit; chromosome CDS392900 3135 - 0.586284
NA BAV2003 putative GTP-binding proteinSubName: Full=Putative GTP-binding protein; chromosome CDS2144874 2622 - 0.67849
NA BAV1280 Putative phage integraseSubName: Full=Putative phage integrase; chromosome CDS1371642 1248 - 0.580128
NA BAV1457 phage proteinSubName: Full=Phage protein; chromosome CDS1515776 384 + 0.606771
NA BAV1214 probable ATP-dependent helicaseSubName: Full=Probable ATP-dependent helicase; chromosome CDS1304799 2052 - 0.635478
NA BAV0722 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS755210 690 - 0.663768
NA BAV1604 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1674082 4647 + 0.60835
NA BAV1766 putative deoxyribonucleaseSubName: Full=Putative deoxyribonuclease; chromosome CDS1853052 771 + 0.587549
NA BAV0368 conserved hypothetical phage proteinSubName: Full=Conserved hypothetical phage protein; Flags: Fragment; chromosome CDS382298 1569 - 0.564054
NA BAV1374 putative hydrolaseSubName: Full=Putative hydrolase; chromosome CDS1445953 711 + 0.61744
NA BAV2217 putative methylated-DNA--protein-cysteine methyltransferaseSubName: Full=Putative methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS2380247 555 - 0.630631
NA BAV2543 nucleaseSubName: Full=Nuclease; Flags: Precursor; chromosome CDS2749803 549 - 0.648452
NA BAV2508 putative exonucleaseSubName: Full=Putative exonuclease; Flags: Precursor; chromosome CDS2709884 582 - 0.630584
NA BAV1423 Putative phage integraseSubName: Full=Putative phage integrase; Flags: Precursor; Fragment; chromosome CDS1496816 1119 - 0.589812
NA BAV2545 DNA helicaseSubName: Full=DNA helicase; EC=3.6.1.-; chromosome CDS2751436 2058 - 0.626336
NA BAV2692 putative ATPaseSubName: Full=Putative ATPase; Flags: Precursor; chromosome CDS2912380 1380 - 0.624638
NA BAV0779 putative bacterioferritinSubName: Full=Putative bacterioferritin; chromosome CDS817292 552 - 0.61413
NA BAV2004 putative exonucleaseSubName: Full=Putative exonuclease; chromosome CDS2147492 1116 - 0.672939
NA BAV3282 putative NUDIX hydrolaseSubName: Full=Putative NUDIX hydrolase; chromosome CDS3566428 816 + 0.688725
NA BAV0396 Putative phage-related recombination associated proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS405880 903 - 0.623477
ada BAV3120 Ada regulatory protein (methylated-dna--protein-cysteine methyltransferase)SubName: Full=Ada regulatory protein (Methylated-dna--protein-cysteine methyltransferase); EC=2.1.1.63; chromosome CDS3394663 1077 - 0.659239
aidA BAV2561 DNA-3-methyladenine glycosylaseSubName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.21; chromosome CDS2772333 645 - 0.609302
bph2 BAV2489 DNA-binding proteinSubName: Full=DNA-binding protein; Flags: Fragment; chromosome CDS2684351 318 + 0.597484
cho BAV1592 excinucleaseSubName: Full=Excinuclease; EC=3.1.25.-; Flags: Fragment; chromosome CDS1662762 906 + 0.645695
crc BAV3181 catabolite repression control proteinSubName: Full=Catabolite repression control protein; chromosome CDS3456193 783 - 0.578544
dasF BAV2934 ribonuclease HIRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS3192760 462 - 0.606061
dbpA BAV0670 ATP-independent RNA helicaseSubName: Full=ATP-independent RNA helicase; Flags: Fragment; chromosome CDS693530 1389 + 0.62635
dinB BAV2034 DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS2178330 1083 - 0.65374
dnaA BAV3412 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS3709832 1452 - 0.600551
dnaB BAV2170 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS2332435 1374 - 0.612082
dnaE BAV2239 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS2411833 3492 - 0.604238
dnaE2 BAV2029 putative DNA polymerase III alpha subunitRecName: Full=Error-prone DNA polymerase; EC=2.7.7.7; chromosome CDS2171534 3147 + 0.649825
dnaG BAV2330 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS2510416 2025 - 0.601975
dnaL BAV1072 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1148307 2088 + 0.617337
dnaN BAV3411 DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS3708720 1116 - 0.595878
dnaQ BAV2931 DNA polymerase III, epsilon chainSubName: Full=DNA polymerase III, epsilon chain; EC=2.7.7.7; chromosome CDS3187721 732 - 0.571038
dnaX BAV0914 DNA polymerase III subunit TauSubName: Full=DNA polymerase III subunit Tau; EC=2.7.7.7; chromosome CDS970932 1941 + 0.660999
dps BAV1905 ferritin-like DNA-binding proteinSubName: Full=Ferritin-like DNA-binding protein; chromosome CDS2000025 501 - 0.566866
fis BAV2775 DNA-binding proteinSubName: Full=DNA-binding protein; chromosome CDS3002693 240 + 0.591667
fpg BAV0533 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS554522 828 - 0.67029
gyrA BAV1347 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1416988 2652 + 0.605958
gyrB BAV3410 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS3706184 2454 - 0.605949
himD BAV1355 integration host factor beta-subunitRecName: Full=Integration host factor subunit beta; Flags: Fragment; chromosome CDS1427863 360 + 0.608333
holA BAV2494 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS2689920 1050 + 0.675238
holB BAV1765 DNA polymerase III, delta' subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS1851982 1044 + 0.66954
holC BAV1136 DNA polymerase III, chi subunitSubName: Full=DNA polymerase III, chi subunit; EC=2.7.7.7; chromosome CDS1210919 438 - 0.6621
hopd BAV2121 DNA-binding protein Hu-betaSubName: Full=DNA-binding protein Hu-beta; chromosome CDS2268507 273 - 0.571429
hrpA BAV2241 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS2416420 3879 - 0.631606
hsdM BAV0546 type i restriction enzyme EcoR124II M proteinSubName: Full=Type i restriction enzyme EcoR124II M protein; EC=2.1.1.72; chromosome CDS570161 1560 - 0.548718
hsdR BAV0543 type I restriction enzyme EcoR124II R proteinSubName: Full=Type I restriction enzyme EcoR124II R protein; EC=3.1.21.3; chromosome CDS564642 3102 - 0.553836
hsdS BAV0545 type i restriction enzyme EcoR124II specificity proteinSubName: Full=Type i restriction enzyme EcoR124II specificity protein; chromosome CDS568944 1221 - 0.464373
ihfA BAV2065 integration host factor alpha-subunitRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS2205039 351 - 0.581197
mfd BAV1061 transcription-repair coupling factorSubName: Full=Transcription-repair coupling factor; Flags: Fragment; chromosome CDS1132089 3438 + 0.610529
micA BAV3063 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS3334300 1068 + 0.657303
mutL BAV0725 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS758212 1866 - 0.674705
mutS BAV2590 DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutS; chromosome CDS2798612 2628 + 0.653349
mutU BAV1417 DNA helicase IISubName: Full=DNA helicase II; EC=3.6.1.-; chromosome CDS1487892 2253 + 0.624501
nfxD BAV2378 topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS2560455 2013 - 0.614009
nth BAV1091 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1167823 636 - 0.600629
nudC BAV2947 NADH pyrophosphataseSubName: Full=NADH pyrophosphatase; EC=3.6.1.-; Flags: Fragment; chromosome CDS3203014 774 + 0.633075
nudF BAV2428 ADP-ribose pyrophosphataseSubName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; chromosome CDS2620278 585 - 0.617094
nudH BAV2909 (di)nucleoside polyphosphate hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS3167053 570 - 0.554386
ogt BAV3160 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS3436060 558 - 0.663082
parC BAV2376 topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS2557536 2319 - 0.623545
phrB BAV1830 deoxyribodipyrimidine photo-lyaseSubName: Full=Deoxyribodipyrimidine photo-lyase; EC=4.1.99.3; chromosome CDS1921150 1458 + 0.641289
polA BAV2388 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS2576727 2715 - 0.612155
priA BAV3210 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS3488486 2049 - 0.649585
priB BAV2174 putative primosomal replication proteinSubName: Full=Putative primosomal replication protein; chromosome CDS2335586 324 - 0.635802
radB BAV2723 DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2948685 1653 + 0.642468
radC BAV2405 DNA repair proteinRecName: Full=UPF0758 protein BAV2405; chromosome CDS2596871 678 + 0.654867
rdgC BAV2313 recombination associated proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS2496560 903 + 0.593577
recA BAV2309 RecA protein (recombinase A)RecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2490605 1062 - 0.590395
recG BAV1920 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS2014564 2055 - 0.648175
recJ BAV1520 single-stranded-DNA-specific exonucleaseSubName: Full=Single-stranded-DNA-specific exonuclease; EC=3.1.-.-; Flags: Fragment; chromosome CDS1572405 1707 - 0.686585
recO BAV1133 DNA repair proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1208937 588 + 0.62415
recQ BAV2781 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS3007926 1821 - 0.622186
recR BAV0916 recombination proteinRecName: Full=Recombination protein RecR; chromosome CDS973256 609 + 0.648604
rep BAV3209 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS3486379 2055 - 0.606326
rhlE BAV3343 putative ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS3629392 1434 + 0.654812
rhlE BAV0171 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS174494 1779 - 0.669477
rhlE BAV2760 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS2985829 1434 - 0.638075
rnhB BAV1748 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1835701 609 + 0.625616
ruvA BAV2778 holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS3005217 573 + 0.642234
ruvB BAV2780 holliday junction DNA helicaseRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS3006837 1074 + 0.648045
ruvC BAV2777 crossover junction endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS3004588 546 + 0.668498
smf BAV0198 Smf proteinSubName: Full=Smf protein; chromosome CDS204963 1122 - 0.700535
ssb BAV0080 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS78045 501 + 0.628743
tag BAV2848 DNA-3-methyladenine glycosylaseSubName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.20; chromosome CDS3095497 603 - 0.60199
topB BAV3380 DNA topoisomerase IIIRecName: Full=DNA topoisomerase; EC=5.99.1.2; chromosome CDS3671578 2637 + 0.613197
ung BAV0172 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS176533 759 - 0.629776
uvrA BAV0078 excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS73573 2859 - 0.621546
uvrB BAV1505 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1559074 2031 + 0.598228
uvrC BAV2456 excinuclease ABC, subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS2649659 1734 - 0.618224
xerC BAV0153 tyrosine recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS157249 978 - 0.664622
xerD BAV0904 tyrosine recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS958078 945 + 0.649735
xseA BAV2097 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2245283 1359 - 0.660044
xseB BAV2179 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS2340340 237 - 0.590717
xthA BAV1631 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS1703648 786 - 0.604326
yqgF BAV3011 putative holliday junction resolvaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS3276069 396 - 0.618687