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2024-05-05 21:39:25

Gene list

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COG category: Replication, recombination and repair
Organism: Bordetella avium 197N, 197N

Number of genes found: 119

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bordetella avium 197N, 197N
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BAV2215 DNA-3-methyladenine glycosylasechromosome CDS2378932 627 - 0.614035
NA BAV1283 putative phage methyltransferasechromosome CDS1373403 1034 - 0.615087
NA BAV1360 putative exported proteinchromosome CDS1431996 390 + 0.682051
NA BAV1374 putative hydrolasechromosome CDS1445953 711 + 0.61744
NA BAV1457 phage proteinchromosome CDS1515776 384 + 0.606771
NA BAV0722 conserved hypothetical proteinchromosome CDS755210 690 - 0.663768
NA BAV1214 probable ATP-dependent helicasechromosome CDS1304799 2052 - 0.635478
NA BAV3162 conserved hypothetical proteinchromosome CDS3437587 438 + 0.712329
NA BAV1176 putative methylasechromosome CDS1256384 1608 - 0.656095
NA BAV1370 putative radical SAM proteinchromosome CDS1442349 1587 + 0.623188
NA BAV1280 Putative phage integrasechromosome CDS1371642 1248 - 0.580128
NA BAV0779 putative bacterioferritinchromosome CDS817292 552 - 0.61413
NA BAV1423 Putative phage integrasechromosome CDS1496816 1119 - 0.589812
NA BAV3282 putative NUDIX hydrolasechromosome CDS3566428 816 + 0.688725
NA BAV0368 conserved hypothetical phage proteinchromosome CDS382298 1569 - 0.564054
NA BAV1978 conserved hypothetical proteinchromosome CDS2121432 780 - 0.614103
NA BAV1604 conserved hypothetical proteinchromosome CDS1674082 4647 + 0.60835
NA BAV1791 integrasechromosome CDS1881450 1113 + 0.672058
NA BAV0564 conserved hypothetical proteinchromosome CDS587746 621 - 0.642512
NA BAV2808 putative excinuclease ABC subunitchromosome CDS3037588 5703 + 0.636332
NA BAV0386 restriction modification system, specificity subunitchromosome CDS396052 1239 - 0.51251
NA BAV2217 putative methylated-DNA--protein-cysteine methyltransferasechromosome CDS2380247 555 - 0.630631
NA BAV0913 putative nuclease/helicasechromosome CDS967254 3324 + 0.667268
NA BAV1524 putative deoxyribonucleasechromosome CDS1577127 801 + 0.659176
NA BAV2545 DNA helicasechromosome CDS2751436 2058 - 0.626336
NA BAV0387 restriction-modification system, modification (methylase) subunitchromosome CDS397292 2775 - 0.564324
NA BAV0396 Putative phage-related recombination associated proteinchromosome CDS405880 903 - 0.623477
NA BAV1629 conserved hypothetical proteinchromosome CDS1701792 507 + 0.646943
NA BAV1766 putative deoxyribonucleasechromosome CDS1853052 771 + 0.587549
NA BAV1591 deoxyribodipyrimidine photo-lyasechromosome CDS1661542 1224 + 0.650327
NA BAV2003 putative GTP-binding proteinchromosome CDS2144874 2622 - 0.67849
NA BAV3038 putative NUDIX hydrolasechromosome CDS3302730 966 + 0.6853
NA BAV1068 uracil-DNA glycosylasechromosome CDS1141470 621 + 0.655395
NA BAV2004 putative exonucleasechromosome CDS2147492 1116 - 0.672939
NA BAV2508 putative exonucleasechromosome CDS2709884 582 - 0.630584
NA BAV0385 restriction-modification system, endonuclease subunitchromosome CDS392900 3135 - 0.586284
NA BAV2249 putative DNA-3-methyladenine glycosylasechromosome CDS2426761 693 - 0.617605
NA BAV2543 nucleasechromosome CDS2749803 549 - 0.648452
NA BAV2692 putative ATPasechromosome CDS2912380 1380 - 0.624638
NA BAV1287 Putative phage recombinasechromosome CDS1376241 903 - 0.624585
ada BAV3120 Ada regulatory protein (methylated-dna--protein-cysteine methyltransferase)chromosome CDS3394663 1077 - 0.659239
aidA BAV2561 DNA-3-methyladenine glycosylasechromosome CDS2772333 645 - 0.609302
bph2 BAV2489 DNA-binding proteinchromosome CDS2684351 318 + 0.597484
cho BAV1592 excinucleasechromosome CDS1662762 906 + 0.645695
crc BAV3181 catabolite repression control proteinchromosome CDS3456193 783 - 0.578544
dasF BAV2934 ribonuclease HIchromosome CDS3192760 462 - 0.606061
dbpA BAV0670 ATP-independent RNA helicasechromosome CDS693530 1389 + 0.62635
dinB BAV2034 DNA polymerase IVchromosome CDS2178330 1083 - 0.65374
dnaA BAV3412 chromosomal replication initiator proteinchromosome CDS3709832 1452 - 0.600551
dnaB BAV2170 replicative DNA helicasechromosome CDS2332435 1374 - 0.612082
dnaE BAV2239 DNA polymerase III alpha subunitchromosome CDS2411833 3492 - 0.604238
dnaE2 BAV2029 putative DNA polymerase III alpha subunitchromosome CDS2171534 3147 + 0.649825
dnaG BAV2330 DNA primasechromosome CDS2510416 2025 - 0.601975
dnaL BAV1072 DNA ligasechromosome CDS1148307 2088 + 0.617337
dnaN BAV3411 DNA polymerase III, beta chainchromosome CDS3708720 1116 - 0.595878
dnaQ BAV2931 DNA polymerase III, epsilon chainchromosome CDS3187721 732 - 0.571038
dnaX BAV0914 DNA polymerase III subunit Tauchromosome CDS970932 1941 + 0.660999
dps BAV1905 ferritin-like DNA-binding proteinchromosome CDS2000025 501 - 0.566866
fis BAV2775 DNA-binding proteinchromosome CDS3002693 240 + 0.591667
fpg BAV0533 formamidopyrimidine-DNA glycosylasechromosome CDS554522 828 - 0.67029
gyrA BAV1347 DNA gyrase subunit Achromosome CDS1416988 2652 + 0.605958
gyrB BAV3410 DNA gyrase subunit Bchromosome CDS3706184 2454 - 0.605949
himD BAV1355 integration host factor beta-subunitchromosome CDS1427863 360 + 0.608333
holA BAV2494 DNA polymerase III, delta subunitchromosome CDS2689920 1050 + 0.675238
holB BAV1765 DNA polymerase III, delta' subunitchromosome CDS1851982 1044 + 0.66954
holC BAV1136 DNA polymerase III, chi subunitchromosome CDS1210919 438 - 0.6621
hopd BAV2121 DNA-binding protein Hu-betachromosome CDS2268507 273 - 0.571429
hrpA BAV2241 ATP-dependent helicasechromosome CDS2416420 3879 - 0.631606
hsdM BAV0546 type i restriction enzyme EcoR124II M proteinchromosome CDS570161 1560 - 0.548718
hsdR BAV0543 type I restriction enzyme EcoR124II R proteinchromosome CDS564642 3102 - 0.553836
hsdS BAV0545 type i restriction enzyme EcoR124II specificity proteinchromosome CDS568944 1221 - 0.464373
ihfA BAV2065 integration host factor alpha-subunitchromosome CDS2205039 351 - 0.581197
mfd BAV1061 transcription-repair coupling factorchromosome CDS1132089 3438 + 0.610529
micA BAV3063 A/G-specific adenine glycosylasechromosome CDS3334300 1068 + 0.657303
mutL BAV0725 DNA mismatch repair proteinchromosome CDS758212 1866 - 0.674705
mutS BAV2590 DNA mismatch repair proteinchromosome CDS2798612 2628 + 0.653349
mutU BAV1417 DNA helicase IIchromosome CDS1487892 2253 + 0.624501
nfxD BAV2378 topoisomerase IV subunit Bchromosome CDS2560455 2013 - 0.614009
nth BAV1091 endonuclease IIIchromosome CDS1167823 636 - 0.600629
nudC BAV2947 NADH pyrophosphatasechromosome CDS3203014 774 + 0.633075
nudF BAV2428 ADP-ribose pyrophosphatasechromosome CDS2620278 585 - 0.617094
nudH BAV2909 (di)nucleoside polyphosphate hydrolasechromosome CDS3167053 570 - 0.554386
ogt BAV3160 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS3436060 558 - 0.663082
parC BAV2376 topoisomerase IV subunit Achromosome CDS2557536 2319 - 0.623545
phrB BAV1830 deoxyribodipyrimidine photo-lyasechromosome CDS1921150 1458 + 0.641289
polA BAV2388 DNA polymerase Ichromosome CDS2576727 2715 - 0.612155
priA BAV3210 primosomal protein N'chromosome CDS3488486 2049 - 0.649585
priB BAV2174 putative primosomal replication proteinchromosome CDS2335586 324 - 0.635802
radB BAV2723 DNA repair proteinchromosome CDS2948685 1653 + 0.642468
radC BAV2405 DNA repair proteinchromosome CDS2596871 678 + 0.654867
rdgC BAV2313 recombination associated proteinchromosome CDS2496560 903 + 0.593577
recA BAV2309 RecA protein (recombinase A)chromosome CDS2490605 1062 - 0.590395
recG BAV1920 ATP-dependent DNA helicasechromosome CDS2014564 2055 - 0.648175
recJ BAV1520 single-stranded-DNA-specific exonucleasechromosome CDS1572405 1707 - 0.686585
recO BAV1133 DNA repair proteinchromosome CDS1208937 588 + 0.62415
recQ BAV2781 ATP-dependent DNA helicasechromosome CDS3007926 1821 - 0.622186
recR BAV0916 recombination proteinchromosome CDS973256 609 + 0.648604
rep BAV3209 ATP-dependent DNA helicasechromosome CDS3486379 2055 - 0.606326
rhlE BAV0171 putative ATP-dependent RNA helicasechromosome CDS174494 1779 - 0.669477
rhlE BAV3343 putative ATP-dependent RNA helicasechromosome CDS3629392 1434 + 0.654812
rhlE BAV2760 putative ATP-dependent RNA helicasechromosome CDS2985829 1434 - 0.638075
rnhB BAV1748 ribonuclease HIIchromosome CDS1835701 609 + 0.625616
ruvA BAV2778 holliday junction DNA helicasechromosome CDS3005217 573 + 0.642234
ruvB BAV2780 holliday junction DNA helicasechromosome CDS3006837 1074 + 0.648045
ruvC BAV2777 crossover junction endodeoxyribonucleasechromosome CDS3004588 546 + 0.668498
smf BAV0198 Smf proteinchromosome CDS204963 1122 - 0.700535
ssb BAV0080 single-strand binding proteinchromosome CDS78045 501 + 0.628743
tag BAV2848 DNA-3-methyladenine glycosylasechromosome CDS3095497 603 - 0.60199
topB BAV3380 DNA topoisomerase IIIchromosome CDS3671578 2637 + 0.613197
ung BAV0172 uracil-DNA glycosylasechromosome CDS176533 759 - 0.629776
uvrA BAV0078 excinuclease ABC subunit Achromosome CDS73573 2859 - 0.621546
uvrB BAV1505 excinuclease ABC subunit Bchromosome CDS1559074 2031 + 0.598228
uvrC BAV2456 excinuclease ABC, subunit Cchromosome CDS2649659 1734 - 0.618224
xerC BAV0153 tyrosine recombinasechromosome CDS157249 978 - 0.664622
xerD BAV0904 tyrosine recombinasechromosome CDS958078 945 + 0.649735
xseA BAV2097 exodeoxyribonuclease VII large subunitchromosome CDS2245283 1359 - 0.660044
xseB BAV2179 exodeoxyribonuclease VII small subunitchromosome CDS2340340 237 - 0.590717
xthA BAV1631 exodeoxyribonuclease IIIchromosome CDS1703648 786 - 0.604326
yqgF BAV3011 putative holliday junction resolvasechromosome CDS3276069 396 - 0.618687