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# Tropheryma whipplei str. Twist, twist

>TWT389 unknown
MRLHLSQSRFKKLCVCILVTSLAFFHTTYVVADESELPSWSEIEKAKTDI
REKQKQIHAINLALNRLSQRLNEASDRVLKLSADYTVGENNLEIIDNSLS
NLNLQRRNAQKSIVESSKQINRVITGMFQGSLIAFDLDAFKVPDGLLYGL
TVMNRYTDNLSNFRNKMFASYNSFSYIQRQIEETRLLQKKLIVSVDAKRA
EAVKSVEQLKLDMARKRDLSTRLLSMLASLKGTTLAKEKQLKQEEERAAI
AKTEPARSTGINTKIIEIDSNTSKTGGRTRKNKNKKDDSNPLYLLAISGL
PKREEAKRYAKKRVFDRGWNEKEWKCLEILWTRESTWRWNAYNLSSGAYG
IPQALPGSKMANIADDWMTNQNTQIEWGLSYITSRYKTPCKAWEFWQKSN
WY
>TWT359 putative primosomal protein N'
MPRVAKVLLNLSGRDILLDYFVPDGLHINRGHLVTVPFRGKICEGYVLNI
HTPESYVGHLRFIHDKPLEIPVLTRDISLLAHRIARRNCSQIGNLLHLAI
PKRRVRIEKAFFKNLSGIKDTDPPVQSQDFAFFSQRVRLTSRCRYSLCVP
IGIDTQGIQPWAHEFAALATQCYRSGRTAILAVPDQKCQRQLLKALSKVP
ELRNDDIKILNSNQTSSDRYKNFLDCLLDRERIIVGNRSVIYAPSNNLGL
IAIWDEANYAFLEHRTPYPHIRDIALIRQQISGCVLLFACHIPSMPVMYL
EKTGHIECVGYAYRRRPKLFVPKEPGQIPSDAIRVMRNALDTGPVLVQVQ
QKGHIQSFSCANCGQLARCKDCSGPLTKTSFYGTSQCKWCAKIADNACSI
CGSQKIVMLRRGSDRTAYELTQAFPGCNVLTSDSSNPIELLDVKMLKGTI
VVSTCGSEPLVSQGYAAVLILDANTMAVRQNFETAYSTLKRWTAAISLLR
HDGTLIIPGIVNRLVRAIGAWQLVSYLETELEHRITLKLPPAVRIFSITG
RKSEIDIIALHLREFDPVRVFGPISQDDSKFRLIVMNDFKDVNRVMDFVK
KMLDSLRGSSIKIRCDDPEILDEI
>TWT520 DNA helicase
MFMDISECSLPDAIDSIARIPEGSRVSVIGPPGSGKTSLLLSLLEKYSES
FEPEEVLVLAPGRLLANRLNGIALPALLKEKKVRSGRLVVTPASFAFRIV
QNSMKGERPTLLSGADEDQVIAETIAQNCELFKSSYARSPNFRSRMRFFI
EDLSRHGIDPAHLGKIDRWKTYAALIEKYRLARTSNNAFTAVEIIERAAQ
LASTGYLPYRVIMVDEAQELAAEHMRLFSALARRNITVILFGDPDKAVAR
SASPSIFLDFSEKLFVLKTVFRTPRNLHLLSQKICQGIGVTGSVLAHRQS
FNSSILEGRVETVISSSRATSMADIARWFREKHLLEGIDWEDMALIIFQR
SSAEVYSHFLERFGVPVQILGGGLNLSEKPIAGAILNAIELACFPDILTG
KTLVKLLLSPIGGFDVFLMRKLTIELKRIAPKNIQVLNERLLWAFHAYRK
LQTQDTDEVYRVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIWHV
YSFLNLKSAVSKEPWQTSKVSHRVLEEVIALQKLADAVSKKDPLCSAGLI
LQKIINAEVPVDNLSIREKRGCVTILTPASSVGYEYRAVVITDIQGLHKM
DSTQLDPELALADINNIPFSRYLESKLAGRRHNLLRTLYQAVTRSTSDLL
VSVIDSAETSPSWLFYAFFSDYPSCELSSLPLTLRGIVTQLRLDLERDPG
NTEAASALRLLAKEGISQADPQNWYGYLSRTENKSYVMDSIKPSVLDKFH
TCPLGWFTDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQPNLNEFLDYA
YAKLREADFESRWVLEREKKRLVGIIRKLVDYLIDFDAHGGTLLASEKSF
SFDLNVFKDRSIMISGQIDRLERLSSGEIRIVDLKTGSSLLSKNDAESNL
QLSAYQLAVEHLDIVYETLPSAMLIYPAVGTKKAAIRIKGPMDRDSKRVL
KNTIRDLLLQNESFTLTAALEEHCESRTACKKLMVPHVSFSVK
>TWT669 unknown
MHTDGILTLNGFLEGKIASLGGINPLLHYHDSGLSGIELSKAHPGGIPQF
VTGKTVLLSHLVRDEIALKEARQAASNLVAKGNNLLSFRGIHSIHLAIGL
TKWTFKSVGYCAPVLLQPVAMRVYRNDFQMKLMGYPVFNAELSVALLEQY
GISLDPESFVTLATESGNFKPQPVIEHLRLMTSSIDDFKVFPRLVVSCFF
HPARSMLIDFQKVTDNPFVSALIGRREELDLIRTDKSLKLPDASNQLLLE
ADDEQKLVVSAILEGRSLAIRTTPGAQVTQAVVNVIGGMLANNKRVLVVS
ARQAHFNDIRNHLRRLGLAGLGVSIPRIRHDLIDSIRRNEGARPLHMLEV
NDALVRLRRVLLDYRRALHGKDDAIGVSPLDAIEKLAYLSLLEHPPSSAV
RFDKGSLEKLSRRKGEAADLLRKTAELGEFECGPGDSLWYGISFATNEDA
LAAHNLAKHLFAIGLPILFDKSDALISQTNMRSFKTLDELRAILECFQDS
RDILEIFRPEIFGLSLEELIEATSPRRRSPGLSSGKRRQLKKLVREYLLP
GVRVQGLHDNLVKIRQLRLLWDRYSPAGTTPKIPVGVADVKVMFEKVKSD
IASLNKLFANLHLMNVPRIELMKIFESLAADSESIKHIKQRTDIRDQLRE
IGIGDLLEDLSIRHVPPSRVSDELDLAWWQSVLEFFLKNRSALLGGNTSV
IERLEQDFKLVYRASMAAAGTLLAWNMAESWKVALVDYPDEAIELKDLLL
KGHLVPEKLFGKAPNLAKVLSPVWFASPYSVHQLSCDFDTVIVLGAGELS
IAESLGIVSRGKQIVAFGDPITEFPEHFDIASFGANEEIYPRKTSYFTSR
DTQEESLFSKLSEILPSLEMNNSHRPYGLIGIANSGFYKNKITGLPWAGN
FLGQQSVTFHYVPDGTGLPDRVTSLVEAVDAEVNFVTSLVAKHIADESCM
VVTPSLKMATRIRQELKKYDDQLLAKKSSEPFIVVDPRQALSYTRDRVIF
TLGYGLTPIGGVMSGFGPLDGDDGEKLIAIALTRARRCLDIVGCFQPEKI
DTKRLKKGPALLMKLLSSYNPLNTDSSFETAGSMLDDLARRLELVGIKVR
VNYCAVLPLAAGYANRAVAVDIDNTFDDLHDALSLRPRTLEELGWIYMKV
HSFELFTSPDEVAGRIKHALGV
>TWT325 deoxyribonuclease
MRGRNTPPYNPKVLANNGKTNTSKWNRIHGMADKASTYPPLPLTLPSPVY
DSHTHLAPGTDYKDQLDRAEAVNVIGVLQVGTDVNTSHASVELAMQDQRI
LAAVAIHPNDAADIYKKANDATHRVEGQPHTECEKCIPPAKALEKSLTQI
ANLAGSKRVRAIGETGLDYFRTQSDLYRAAQRFSFDAHIQIAKEHNLALQ
IHDRDAHRDVIECLLRAGAPDRTIFHCFSGDEQMLEICIKNGWYMSCSGI
ITFKNAREMQKIFAKVPKELLLVETDAPFLTPSPFRGFMNSSYMLAHTVR
ALAEIRQENIDQLCTQLSRNTCEIFGKW
>TWT091 unknown
MRAVFSVTFRSGKRDVPQGGKLMQLKQVTITNYTPISDITLEVRRHLVLV
GANDSGKTSILTCLDLLLSATTPMLYSHFQAWHFRDATKPIIISVDINNL
DDKIQIAFGINNNRISEIKLTLSAFLDESQMLTIKREVLYNNTTKPVADS
QLTGIGWELFDAGEVPCTASQYKTVLSGVMESTNLRQHGLSSLTQSFREQ
IEASPFLENLRERLAEKLIKTMPGNLNKDAVHLVPKDDIGTQVLGNIRVQ
VKRQNKSPHMIDCLDGMRSLYAVAIYDVLSRDASVVGIDEPETHLHPTIQ
RSLARVLQEESNQKIIATHSADIVGAFSPEHVAVVQPNGQVVQPARGFLG
EDERIIARWWVHGRLEPLTARRIVAVEGISDRIILESAAEVTGRNLDRLG
IALIEANGSGDMWPIYKLFGPKGFRIPISLLIDSDAVQHTSVRLGIPKNE
FTQNSIYVSKRDLEDEYTRAIGANTLWNALRESKLFAHSELRGGGKTEQA
VAAFCRKNSSNKVRAALVVSSLLNEELAIAIESVNSLLNAIELPR
>TWT744 exodeoxyribonuclease III
MRIATWNVNSIKTRLSQVLHWLTENEIDILALQEIKCRTNAFPAEVFMEH
GYFCAAHGLGGREGVAIVSKSEPQDITTDVEGIPGYDDRNTGKQDKSDVQ
ARIIAATVGGVRLYSVYVPNGRDVHSPHYLYKLDWLEGFATHIRGVINTE
PNLVIAGDFNIVLFDSDSNDPRVQTDTDVFRTPHERQAFYNLLDLGLRDL
VRPTEPEGFTFWDYRAGRFQKNEGLRIDHILGTDPIANSVRFAKIHHEQR
KGDEGKTPSDHVPVMIELR
>TWT771 DNA modification methyltransferase
MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTR
QCSKMVRSPYGEQIGFCGNRYKILSESRTEYADMFDDYLGFLKPRLHEAW
RLLKPEGMFYLHLDYREVHYAKILLDSIFGRDSFINEIIWAYDYGAKTKR
RWPAKHDNILVYAKDPRKYLFDSENVDREPYMAPGLVTPDKAKRGKLPTD
VWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWVLDFFAGSGTT
GIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY
>TWT519 putative DNA helicase II
MNMSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLV
LRLLWLIASGKLKPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLS
PEIDVLTYNSFANSIYQDNALLLDHPVPYTAIEDSEAQLIARRLLVEHGL
DEDEPSETIDNLASSLIKLDDAIVDNLLDLGELNQFASEFIEFVGAFDAP
VAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAFALEVCRQTHV
LAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFGNRCRVLAVGDPRQAIFGF
RGASVANIANFARDFVSNKQYELSISWRNDKNILDLANHISPKIRPLHPR
PEANDGSTSLEVYTDPEQEVHEGALWLNSVVEKGTAAVLTRTRSRLISVS
RVLDEIGVSYTRADVNIFYEPEVVDILSCMRIISGVNENLSFLRLITGPR
WQVGISDLHALRGYIAVGKKNLDRISLLEAVNRINIQKTPMSCEGKKRLE
DFLEFFRKIKGLSFLSPLELAYLIEESLNLDIEVQMSHRGRENLDALYEL
IASFRGDNLSEMLAWFDSLEEEDAFRGPTKQSCPGQVELFTVHSAKGLEW
DWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDS
KEYRAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQF
LREISEFLQTDLPQAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRS
IEESEESLKKEPLKALIAGMLKELDISVDKPEKRISATALSKKDPNVFLL
PQPPIKNAWLGVAFHAWIENYYSTYSDMLFHENSADEYGISGPVFEQSQR
FSPELDQLRHNFMQSEWSYKKPIAVELSLEWLIGDVIVPCTIDAVFFDGD
RYTILDWKSGLSSNQYRIQLSLYRLAFAEWKGVNPDKVEAKIYFAADNRT
IKVRPYTVDELGKMPGFLSDLFS
>TWT455 unknown
MSFEQIRVITRKSCCAGSSCIFVANKESVNCVNTVSVSTQLTCANNGFCA
RALLNNAHGVTHDVSKYALGRIAEDKACDYLSVNGYIVLDRNWYCRFGEL
DIIARKNGVIVAVEVKGGKRNADYPICNITVKKLSKLTFLLKAWLHENKL
NEFCIDLRIDAISVTFIPELQIRHFVGIL
>TWT375 unknown
MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISR
YSIDEVVIGLPLTLAGKEKQSARLAKEFSRFLVSSGVQVRFFDERFTTVI
ATQKFYSLGKGVKQIRKCVDAAAATVMLQLFLDMEVKVDPLERKP
>TWT396 putative DNA glycosylase
MPEGHSIHRSAIQFEHNFVGKKIGISSPQGRFSPGARLLDKQRMISAKAY
GKQLLLGFENNRFLQVHLGIYGAWQFYGNISCAPTILPGAEGIQSIGAPR
RLKGPCITKNSGSTPGASWKDLMFKHQAQARAKLITDTAGVLLSGPAVCK
VLTPEEADELISRLGPDPVVNPMGYNRFIKAARKSNLQICKLLMNQSAIA
GIGNIYRAEILFRNRVNPFLTSNTIPEDTLKRIWDDWTVLLKCGIKTGQM
ITMNKAPGHWVYNHHKSPCSVCFHPIDCVNVAGRKLYWCVVCQA
>TWT098 unknown
MHYRVLESKLLHKGAVWDVVQEKLDYRGETISREFVSHPGAVGVLALNDK
NEALLIRQYRHPIRTREWEIPAGMLDLSGESPLDAAKRELSEEVDMCAQT
WHTLIDFTLTPGGSNEVMRVYLARELRASQAKFNRKSEEADMEIAWIPME
DLLFSVLTRRVQNPVLMLAALAAHEGLQVQWKYLRDADEPWPVYERLKGL
IS
>TWT685 putative exodeoxyribonuclease
MLEVASVNVNGIRAAHRKGMDLWLKERNPDILTIQEVRAQESDLRGILPN
WNISFDPCSIPGRAGVAIASKFPPIAVRTKLRANKILNPETASEEPLNTS
GRWIEADYDIAGKLVTVVSCYVYAGEARTIKQEEKMAFLQAVEKRMKSLV
KEEFALVTGDFNVGHTTLDIKNWRGNLDKSGFLPEERAYLDALVGNESDK
EYNAGAGQGWIDVVRKIKGGIDGPYTWWSMRGNAFDNDTGWRIDYQFATQ
RLKALWVAIDRQKSYAQRWTDHAPVVVKYDF
>TWT694 putative DNA polymerase III delta' subunit
MPSGKSRANTSNSRSAMRAVQEPSVASGSTANALPPADVWNDIACQDRAV
QELKGTIINPKRMINSWLFYGPSQSFALALAYASALLSPNAMKGEPTGDK
ETHSMVSARTHPDLRILTTENVTVPIREIRELVMKAQLEPSLADKTVFIV
EDLTRVPRRSLNVLLKPLEEPHAHVVWILCAPSIRGVTPTIRSRLRAIYL
NEPSIENLAGYLTERRGIEKSLACEISYASLGNVDDALYLVDNESTRLMR
KKALDLVFCNRDLAEAVCSAQTILDLVSKEAESVVQKRDLQLREGFLKNF
AFKQGDVIPKQLQHLQPRRDNKQQVSRQVRDALDGIFLSCLSVCRDVLAI
KSGATNCLYNPGSRILDKLSSMPPEKILRNVKALEYARDALKSNVMLLLL
LESILVQMVEM
>TWT636 putative methyltransferase
MRIIAGFAKSIKLEAPTRGIRPTTERVRESLMSSLQARMLLEDAVVIDCF
AGTGALGLEAVSRGARVLHLIDKSAKAFKACKKNADRVKAFCEHAQIHVH
KANVTTFLKSSLQHTTRASLVFLDPPYDYPPHKLEEVFIHLLHWINEDTV
VILETDRANGTPPVGDALKVTEQKQYGHSVVWWMSQP
>TWT118 DNA helicase
MFPEIQENMTNAVIKDRTSHLLSALARTVREVEMSLVRKRIGPSSVMRFH
AVALLLRQERARVKSDPDITDTVRTELIRRLDGLAAVMVRIAARDTALMS
IVTPDAPVSDGALLYRRRLLSQIGVIDPDGGSSEIREAAPPPPSLELYPQ
SVKMYHATHIFRPPGPDMESDLVPIIRLANWDLVGSVFKAFSQGGASVCK
SLPAPSPFLDRLAPDGLSMMPHQAGFVESARLGHRSFLLADEPGLGKTAQ
SLLAAGVTNSFPLLVVVPNVVKLNWVREAKMWLPGRRATIISGDDLDAFA
DIFVINYEMLDRHMLWMVDFGFAGMVVDEAHLIKNFSSQRSGNVLALAQH
IRKKCCNPLMIALTGTPVINSVEDFRALWLFLGWLAGPRGRDLSPVFVSE
LEKTGLTPEDPGFSETVRDVMGHLGIVRRRKTQVAKDLPERMVVDLPVEL
DGDAFRSVKNAEDDLADALYAQYISLKHLRIDDYQIRLKAVERFAVESKD
SSALNIFSIVRKIGITKAPLAIDFTIQMLDSVGKIVFFAKHIEVMNMAEE
MFCQQGIRSVSIRGSQTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINL
QVASNVVLSELSWTAAEQGQAIDRLHRIGQTEPVTAWRILGAGTVDIRMA
ALVDSKSNDAILSLDGGDMREVQQESLHIRSLLDLLDDRIRKAEQHVE
>TWT704 unknown
MFEHFLLQNYPARRKQSSLAIPRFYKTYFSRTRWERELSEAVCFNGKQLN
SAIHYGIYRTGVIDPVWTAFIFKWVYAFRVRIWRTFC
>TWT021 unknown
MPGTAKIAAFAALASVFVMLTIAQPASARGGLGNISVVAGPGGTYSITAT
VRMDFDPGKCVIGAINKVFSVDSISTTVGFTLLDKMVKVLKVSIKLTRLI
NFSSSVLTAIVTGCRGIVSTETPVHPVPIVSSDCSAYDMGHKLGYRCQRR
>TWT597 putative serine/threonine-protein kinase
MIPFFNKHTRSTDDKDTEKARQIIGNYRVIKTLHESDRAVIYLAQEISGD
PGMVARQSFMDPGELVNLVALKMYRAGVTSEHIAIEADALDSLRGPGVVE
LRDVLNLPDKRGLVMRALHGPALVDLWETRGSLSPGEMVTILASLVATLA
RISSAGYAHGAVWPGNIRFDDIGRPVLTGFSSARKHAPPNADWLDFYSLL
RGCAVLINEKQEQMLQISAGVRKRLDPFDPELPAWVEASLFRLADPQPLR
FEHPISLHDTSGYNLRESPNPVDSNRQTGKSQIILKLTDNKYVAAILGKL
KRPSVLFIALFVSVFVVLLMVIPNNSGEDNERKSEKPGYVKSKGTFKKPS
KTGKSRKRSEVSEKLRKNMEECLASKDADCVDVMSEINADLGEKLDEG
>TWT384 comEA, comE operon protein 1-like protein
MHKFRWTLSAATSWSFVISLVLASGLLILVYTKPFFGPDKNSKNVSFDAI
ESPAHTSFTATSSGMNMISVHVAGEIVHPGVYSLEAGSRVNNAIIAAGGF
KPLSDTNSVNLAELLRDGQKIVVLPKDSESSPVNINTADAQRLQSIKGIG
KATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLIKSIKDKVIL
>TWT001 dnaA, chromosomal replication initiator protein
MNKTLNPQEVWIKAVRNLEGFFSSPRVIGYLKKASPSIEGESLIITFPNS
HLASVMDDIEVYDATKKTILDSYPSIKEIKITISPDVLEKEITEEINDLV
QSMEEEDFALIDHTKPVIPNFFDQNTRVNFGGGPNNHHPTTGVNPRFTFD
NFVVGKSNELARAASISAAERPGKSFNPLFIYGDSGVGKTHLLHSIGNYA
KFLFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQF
LQKKQETQESFFHTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECG
LVCDIQKPDLETRIAILQKKCQNEKKEVSMEILTYIASCFSSSVRELEGA
LLRIFALASFNKEEINMTLAQKVLEDLGAQRGDKIDPIEIIEITAKHYDL
AASDLCGNSRVANISIARQIAMYLCRELTDVSLPKLGYIFGRDHSTIIYA
TRRISDLIGKDRKTFSDIYKLTQFILRR
>TWT738 dnaC, replicative DNA helicase
MSDTKQPPCDINAERALLGSVLLSKDAAAEVFDRIKPNHFYYEVHKEIYK
VMLDLYAASEPTDMVSVSESLRKNHRLEHTKGFEYLNGLAEMVPTPANVY
FYVNIVMEKAILRNLAQTGVNIFHMAMDGVHDVEEIVNKAQSDIFSVTTD
ESDDDLIRLDAVVKETCEGLDESHTNEDVLRGIETGFTRFDSLTNGLHPG
QMVIIAARPSMGKSTLALDFARSAAIKQRVPTVFFSLEMGRQDIAMRLLS
AETGIPLQNIRHGKLSPGDWGAIGSLQGKLADVPFFIDDSPNVNLVEIRA
KCRRLKQQGLGFVIIDYLQLLSGSQRVETRQQEVSEFSRSLKLLAKELQL
PVLALSQLNRSSEQRADKRPAMADLRESGSIEQDADLVILLHRDEYYDKN
ARAGEGDLIIAKHRNGPTDNIPVAFHGKYSRFADLPRQDMR
>TWT510 dnaE, DNA polymerase III alpha chain
MRDYMSFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFG
AFDFWKTAKTYDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGA
YTHLTLLSQNNEGMHNLFKLSSLASIEGYYFKPRIDIELLNQYSNGLIAT
TGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGPENYYCEVMDHNLEIEKA
VMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGSTINDPNR
FKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPR
FSVPEGETENSWFASEVKRGIASRYPNGPSRRVIEQAEYEIRVVQEAGYA
GYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIF
ERFLNPARISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKA
KQALKDSARVLSYPYSFGERLTKAMPPAVMGREIPLRAIFDTTHSRHREA
SEVRQMIESDYEMQQIFNTAKGLENLKRQWAVHAAGVIMSDAPIIDIIPI
MKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDALANIRQNKNT
KVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDIS
AAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGL
IVYQEQVIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRK
AGYSDGATEALWNVLLPFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYM
AALLTSVETSRDKLGLYLQECRHMCIKVLLPDINVSRSGFTPSGENILFG
LGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSVLNRRSVMSLIQA
GAFDSIHPNRRSLMDIHRSVLENCQANARRSDVSLLDGLLDEYEGFSPPD
IPDWDNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQ
DVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIMLSGQNYNNFSE
QLVTDSIVSVTGRISFRDDATTLYCDSIKDVLPVKKEARLRLKCSEGFLT
QNVFIALDDVLRKYPGDTPVTMEVIITDNSVVKSKTFELSRCVEISNDLI
AEVKGILGIEGISG
>TWT288 dnaG, DNA primase
MSKIKQEVIHEIKERANIREIIGEYTNLKRQSAGAYAGLCPFHSERTPSF
HVRETGLYHCFGCGKGGDVISFVQEIEGLNFVDAVEQLARTLGITIVYYE
GDSTPDSRSNLLAACKSAAEFYSEQLLSSTPAVTFLKSRGFDRDLCERYQ
IGFSPTNSGDLYKHLRDKGFTLQQAVAAGLLNPSGMDRFRARIVWPVKDV
TGNIVGFGARKLAEDAQGPKYINSPESSLYKKNSLLYGFDVAKKAISKKD
RVVIVEGYTDVMSCHQSGIDEAVATCGTSWGIGHMRLIKRMLSDSGVLIF
AFDGDQAGQHAIMRAFKDSPEIAARSYAAIFPKGLDPCELRIKNGAQAVI
DLVERAIPLYEFVINHQLSKCPLGTFPERRAALAKILPFLKEISDRILRD
HYTGLVCSRLGIDREQVDLLLPKLEHISSRFHPSKIPWQEDWKKKEFAAP
TNPPDARFALEQQVIKSLLQYQHLLERDTAIAMCDYSFHNPTLSFIAQMI
GMVIREQNRSISPAEFSKLIHSTVPSEYHATLQALEVLPVPVSPDKLDSY
LEGLVRSFENQHLLEEKALLLRQLSSEKSLEKSLELRQRIVELEKQRNSL
LPD
>TWT002 dnaN, DNA polymerase III beta chain
MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYE
TSAKVEFSANVIEGGKVLVPGTLISSISQKLPDEPVEISKEDEKISLTCG
PVNYILNLMPIAEYPPLPNLENAEQYRIPSEDFVKSVSQVTTSAAKDDIS
AVITGINLRLSNESIELTGTDRYRVAVKTLNSVSGHPSDSSVIVSSKTLF
EVSKTLGNLESEISVFIKNDGENKVIGFESGNKTVTSLLISGNYPPVAKL
FTEETGHYAILKTSDFLESTKRVSVVVERDEPIEFSFVKNTVTIKGSGIA
LASEKVECELFGDEISIMLRPQFLCDGLIACQEDFIKVAFTKPSVKNRPG
PVLITPKLSNKEKIDFKYLLQPNLFAK
>TWT710 dnaZX, DNA polymerase III gamma and tau subunit
MMRSEQALYRRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRG
CGKTTSARVFARCLNCVNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAA
SHNGVDDARALRERAIFAPAQSRFRIFILDEAHMVTTQGFNALLKIVEEP
PAHVKFIFATTEPEKVLGTIRSRTFSYPFALVSASVMQPYIADICNKEKI
RVEDGVLPLVVRAGGGSVRDTLSILDQLMVGKCITYESTVGLLRLAPDIL
LYDLFLAIAEDDGATAFASIEKVVEAGYEPVQFIEDLMSWVKDMTLAVCN
AEGVFDSYAPEKVERIFALSKRFSLKDLDAMAEILFSRSNRLSGPISPRL
LLEIMLASLLLAVGKSKLQVSDRVSDTQRQKGYPGNLLHNWSRVLDALKS
ETANMLQHSKPLRLTGSSLTIGMPQEILSRFVANKAAIDDLKSVLYKITG
VQLRLSGKPIDDPDNTVKTPSSCLDNGTVTDNSGHKNTEVDDAETKEKPD
NPITGEAVLVQAGAKLISEEEQ
>TWT006 gyrA1, DNA gyrase subunit A
MSEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAM
YKGGYRPEKAFSKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPL
AQGQGNFGSPGNDGAAAPRYTETKMATLAIEMVRDIDEDTVDFSPNYDGE
SVEPTVMPCRFPNLLVNGSVGIAVGMATNIPPHNLAEVSAGALWCLENPD
ATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGSVVMRGVVDI
EEIDGRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRT
GQRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCS
FIRLWVEHQIEVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRS
SKSAEEAQSNLMALLKIDETQARAILDLQLRRLAALERQRIISEAREIEE
LISSFRKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIED
LIPVEPVVVVMTRCGYIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFI
STTTHNWLMFFTNTGRVYRAKAYEVPEASREARGQHVANLLPLKPNEAVT
RILSVSNFDSEDTSLVLATKDGYVKKTTLKEYDTSLSTGVIAIKLRPGDK
LVSAVLARSDQDIILVTKNARSLRFKSGTLRPLSRGSYGVKGISLRENDL
LLSAELILSDDSYIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITEQK
GVLADMLVVNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDG
DKILAMTIAEKCDDLEGQG
>TWT491 gyrA2, DNA gyrase subunit A-like protein
MSGLDKDIPEIFDVISDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDA
RDGLKPVQRRILYTMSRMGLSPDKAHVKCARVTGEVMGKLHPHGDAAIYD
TLVRMSQDFTMRIPLIDGHGNFGSLNDGPAASRYTEARLSRAAVAMINDL
ESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPPHNLQ
ETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKG
SFKIRAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGI
LDVTDLSDRKNGLKLVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALI
DGKPKTLGMLDMLKVFIDHRVCVITRRSKFYLATHKKRLHMIDGLLLALV
DIDKTISIIRNSEGIKEARKNLMKCLNVTRDQAEYILDIRLNMLTKLSTI
KLQSEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILE
SSVKSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQPETFDMAFNTH
SEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFL
GLENDEEAVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTERVITLSAG
DRVVGAARGVSSCGYFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKD
DDDRVISFGYTEDVDRANVLTVSKRMTTSRLSSYQTRGRATRGVQCHKFL
KGEEWLHAAIVGENLAAIDNLGNVVAIGKSSVTAKSCAGVKQYRLPQEKS
GKSKREDRLIRYLGYPFVHGNDTY
>TWT005 gyrB1, DNA gyrase subunit B
MVDTPEPAYGADQIQVLEGLEAVRRRPGMYIGSTGSRGLHHLVYELVDNS
VDEALAGYCTKINVAILADGGVRVTDNGRGIPVDIHPKEGVSTVQVVLTT
LHAGGKFGSGGYSVSGGLHGVGSSVVNALSKRLYVEVSRQGFVFRQNYEG
GNPTAALERCEETNATGTAITFWPDDDIFETVCFEYEVLRSRLQQMAFLN
SGLTVSITDERVDSPTNNETYCYQNGLFDYVMYQNRIRKHEPLHEEIIHF
QAENKDRLMSLEVAMRWTSSSTENIYTFANTINTHEGGTHEEGFRAALTS
LVNRYAREKGFLKEKDESLQGEDIREGLTAIISVKLGEPQFEGQTKTKLG
NTEMRGYVHHEVNSYLWDWFDSHPAQAKVIISKALLAAEARLAAKRAREA
SRKRGLFESVSMPGKLKECQAKDPAVSELFIVEGDSAGGSAIQGRDPLTQ
AVLPLRGKILNVEKARLDKAIANSEIQAMLTAFGSGIAEDFDESKARYHK
IILMSDADVDGQHITTLLLTLLFRYMRPLIESGYVYLAHPPLYRIKWSNS
EHDYVFSDRERDKKLAEGKLSGKKIPKENAIQRYKGLGEMNYRELWDTTM
NPATRTLRQITVDDVTLADEIFSVLMGEDVDSRRKFIQHNARDVRFLDI
>TWT494 gyrB2, DNA gyrase subunit B-like protein
MSSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVD
EVLAGFGNVVNITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLH
AGGKFGTGAYFTSGGLHGVGASVVNALSEKLSVEVDRDGMTWVMEFRNQV
TSGLRSKCKIASNVTGTRVRFWPDPLIFGSAEICIESLHQRAMQTAFLVP
GLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDVLCIRGKGSFSE
AVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNVIETPKGGT
HYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPE
PQFEGQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVA
QMHFRLAARASRETQRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDS
ALGTARRARNSEYQALLPIRGKILNVQKASVADALANAECASIIQVIGAG
SGSNFDIAQARYGKVIIMSDADVDGAHIRILLLTLFFRYMQPMISSGRVF
SALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYKGL
GEMDADQLAETTMDRSKRTLLRIRMSDAQQASDIFALLMGNDVAPRREFI
ANSVVSTDRIDS
>TWT381 holA, DNA polymerase III delta subunit
MSIDPLVLLSGKCEYSANEAIASIRKKITDSLSAPEVHVIYADNYSAGEL
HRLASPSLLFSPRLVIVKQVEECNDIFLDEAMSYIQDPFKDTCVVFRHKS
GIRGKRLLGELRNIGVEIACPDLTPSRFVSDFFKKEKRNITQAAINLLVE
SFDDIPELAQFCKQIISDTKGTISAKGTISECEIAFLCWSRPGASVFRVV
DAAMNGDEAATVLLLSRLLTEGGSAIPLVAAASARLRLLVKVKYGKKVTA
APWQIALAKKQLAPWTNSSFMSCILALHAADRALKSTAGNPNYLVEHAMR
LIARSARLD
>TWT116 hup, DNA-binding protein HU
MVSLNRTELVAKVAETSGVSRATVNSVIEETFAVFAETVRAGGKVTIPGW
CSVTRSHRAARTGRNPQTGKTVEIPAGYSVRIAPGSKLKAAVK
>TWT414 ligA, DNA ligase
MTTRRNMPHPDGDLDRRIELLTAQIIAARKAYYQENTSLMSDVEYDALEH
ELKDAEHAKGFSDRNSPSLTVGIAAQLNLFEPVKHIEPMLSLDNVFSLDQ
LHSWYEKTKKICPEGDQCTFVCELKIDGVGVSLRYANGYLISAATRGDGA
IGEDITQNMLYVPSIPPRIALPGIFEIRGEAFIKRDEFDRINQLSLERSK
QFANPRNFVSGCIRTKTPNMRYLESISFYAHGFTQVYGYTSGGMNLHSDI
TASGGVKTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRL
NRQCVPYAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLL
DIEVSVGRTGRVTPYAVLQPIQLDGSEVSRATLHNQKVIGDKDLLIGDYV
RIRKAGDIVPEVLCALPEKRDGSEVLFKMPSLCPSCGAELMPSKLGDIDL
RCPNMQSCLVQLAGRLEYIGSRGVLDIAYLAEENAYALSHLRKFGKSAEV
QLFKITIDDLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQDMVDSIE
RAKRSPLWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRS
LGETIAISVHDWFRDPWRVELVNTWRSDGALFGH
>TWT465 ogt, methylated-DNA--protein-cysteinemethyltransferase
MSSVEFAVRMRACAFRVKVYSSQTHIIRVKIFRYASVIDDAHKNTRYKTR
SLSEGSCDCHASNKNSSLTTDLTAEARREILAYFSGTLKTFSVPISLEKA
SAKQADVLNMLLKIPYGGCVSYGEIASKVNSSPRAVGAYCAKNPLPFFVP
CHRVIRSNGEVGGYCGSSNNLIKHSLIEIEQKNS
>TWT080 pcrA, ATP-dependent DNA helicase
MTIPADLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLAT
GEASCDQILAITFTNKAASEMRHRTGDLVGLSVRDMQISTFHSVCVRILR
ECVGHLGKAKNFTIYDAADQRAIIKQICQSTDTFGLTASMVASQIGLLKN
QMHTPDTYSRCLASNSTNGNSVTSITLQREQFILHVFRRYQEILKEANAF
DFDDLISETVFLLQKSPEISAMYRNRWKYLLVDEYQDTNHAQYRLILELT
KGDKSDMSLTAVGDSDQSIYAFRGADIANIVNFENDFPDCHTILLEQNYR
SCQNILLAANALISNNQNRKDKNLWSELGAGEKVIAYCASSAEEEGRFVA
DRVRHLVDQGESLSDIAVFYRSNTQSRVIEESLIRQSIPYRVVGGTKFYE
RAEIKDILAYLTVIVNPDDTLALRRILNVPKRGVGTVSENRLVEFASARG
ITLMQALSRIDEINIQPSAKSALRDLFYLLNRFAGSSMPANELLDDLLKA
TDLLSRFNNTDDPQNEARKINIGDFVDSVEDFAKENPGGTLSDFMTNIAL
MTSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILPHEMSLKEKN
GIEEERRLAYVGMTRAKKVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLL
RWHSRFTHKRFTGPLYGFTARPAGESRQSVHVLKNRYPRESFSISDSVKH
SVFGVGTVVDVLGLGPKQIIVVEFADKRRSLLASIAPIVKCKQ
>TWT777 pknA, serine/threonine-protein kinase
MSFDAGTVLGKRYRLIARIAIGGMGEVWKAHDEVIQRHIAIKILKEEYVG
SRDFIERFRTEARHAAIVNHVGIANIFDYGEEKGIAYLVMELVDGEPLSA
VLERERMLPVEEVLRIVVQISRALQAAHSAGLVHRDIKPGNILISESGLV
KITDFGIARIGDQVPLTTTGQVMGTVHYLSPEQAAGKKADAMTDVYSLGV
VAYECLTGKRPFVGDSQVAIAVAHVGDTPANLPKDIPRPVARLVLGCLEK
QPQRRPKSAGNLADAASALLKDDLAEAARAYPPLAASGEQNGSGQVLDNQ
TKAISTTTSLYSKLGQFDTRLLGQTMEFNGGSESKPARGKWVLPVVGTIT
ALAVIVGGGALAIIVTGNRGGLTETKTGVSTHDVTQTAASYIPTIVSPNT
RPAGNTVVIDPGKYVGLSFDGVQKALFALGVGIKRLSAGPAPSADKAGLV
ESISPTGTLTIPAVIDVKVYGPPVMTPPAFAPRLIGTPKIGGSVYVSWPV
YTSCPAGSQVTLYRISVDGAVLQGPGTVGADTTQVELLLIQNEASVKYSA
DCSVPGKNQTFNSGFSDVLKISTNGSHTPSIASSG
>TWT292 polA, DNA polymerase I
MTGTLDQSKRLILVDGHSLAFRSFYGTKAIAVVNGVQVNALYGFVNRLTQ
LLESGPVSHFAVAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEF
LHLIGVNHFAVQNYEADDIIATLSRLALEEGFSDVRILSGDRDLIQLVNN
KVSLLFFSAKHRLGFAVYTPEAVMDRYGIEPHVYPDMAALVGESSDNLPG
IKKIGEKTATTLLQKYGCLQKIIESRWEISGVVGQNIRNDYHVALRNRKL
NTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRLLRCLQKF
TNAANLNRALTASPQRRGSPSIRKYNSKTQKPVRNNRISGVRRRRYRADR
TSVQLF
>TWT611 recA, recombinase A
MYGNGRFGITVSSNDQINRTRALELALANIDRQYGKGAVMRMNDAQKAYI
DVIPTGSIALDYALGVGGLPRGRIVEIYGPESSGKTTLTLHAIASVQRAG
GIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDSGEQALEISDMLIRSTA
IDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSGLNQTGT
TAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEA
VGNRTRVKVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKS
GSWYVYGDDQLGQGKENARRFLLENKSVADEIENKIISLLGFRSNEFGDL
PDHDAAVRTSPDTNSRKVSGTGAVHTTSGSPSAGKGTASGAVNNSRDSTG
GDTPAGQGPLNLSVNRDVSTDTVSSKISDATHNQKPAGNGKSVKRKG
>TWT003 recF, recF protein
MQNNLISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLS
GFGSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKV
DGKPSKLRDLVSVFSCVIFSPEDIDLVKGDPGHRRKYLDDIICRARPMML
DIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDIWTQKLVELGLEIVNARKR
LLKILNPKISEFYSKLAGVSSTAELFCQSSDCLIDTFDLLRDREIEEGVT
LAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIELMRETKRLYD
PDPVVILDDVFAHLDSYRKQKLAQEVFSYEQTIVTTTDNSDNYRTSQTLV
VEEGKVFSENKKG
>TWT566 recG, ATP-dependent DNA helicase
MSFSILHPIRLRPSIMRFVSRDSSKLCIVVSPLAIAAIIKCLFVRDFDPG
IDILKSALLPRGGWYISVFAILLPTKIVVMEHVFFSDVSVHTGKKMASLL
AKEFGISRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRVLSTEQR
KTFSGANFLSVTLSDGENIIQLVFFHQPWRAENLKPGACGLFSGKVTEFN
NKKQLSHPEYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIARAVDL
ALEAVKGQTVDFMSGNYGYMSVEKAFYVIHHPTDNEELEAAKESLRFFEA
FLLQSALLHRKRFRNRASATPFIRKNGGFLERFDARLEFSQTNDQLRAAD
EIFEDLSLSEPMTRLLHGEVGSGKTLVAIRAMLLAADNDMQAVLVAPTEV
LAKQHHRNLTRMLGHELCAEIQPSLLLGREKHTLRIASGRSKIIIGTHSV
FSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLSATPIPRTV
ALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRISEEIQK
GHQVFVVAPVIEQSRTGAASISALLRELEETPLLQGAKISRLHGKLTAAE
CEKSMEEFSCGASDILLSTTMIEVGIDVPNATAMVIVSADRFGIAQLHQL
RGRIGRGNLPGVCLLVTNAPEGSAARSRLDLVARTHDGFSLAEIDMKMRR
EGDLLGLGQSGQGNYRLLRLDEDLQVLSDARLHAEGIMENDIKLEKNKLL
RLFLSQYLSGTNLSRLLS
>TWT102 recN, recombination and DNA repair protein
MIEQISIRNFGNIAKADIDFGSDFTVITGETGAGKTMLLGALETLLGKPG
NSKYPHNQSAQVIGIWRVPRHFENVLPCIEGKLTVSREISLSGKSVANVN
GKTANNSYLGKLRNKLLVVHGQFAQVRLKNPALQRQILDGYAGNTDLLKE
YQLAWSELSKTNLELRNIRDNLAGRRAEAIGLIQAVEEINEINPQIGEDE
NIKKQINILENHEQLLGNLRATKQLLIDNGIIDKITELQQILCEMEGIKL
QHAYGTAIDTALVTMQELSNEITKQINTLPEGSIEILDEMHNRLGALRKL
QKKYGPTIEDVIDFAKNALARSSTIENDDARVQELEAKKEELQKNVEYLA
KKLSERRVSAARLLGDSVSLNLPCLAMPEARFEVQVLQKSHDSYGMDQVA
MFLRTSYAGAAQPIGTGASGGEISRVMLAIEVALASVKTVPTVIFDEIDS
GVGGAAAIEIGRRLAALARRLQVIVITHSAQVAAFATTHLLVTKTGNLSD
VCSLSGENRVGEMARLLSGLHDSESGLEHSRELLAMAAREMQGRT
>TWT285 recO, DNA repair protein
MSHFLARFTFPEWYVCKNWDVSGHYRDRAIVLRTKPLGEADRIITLFTRS
NGTSDFVAKGIRRPKSRFGSSLEPFTVIDAFLYIGRGMDGVSQAEILASY
GSRLVKSTESYIAANVIAETGRRLGIAGGSVQQFDLLHGAFSALSRGISS
PEAICSSYLLRSMSAAGWRPALENCAKCLLPLVEYTIDISAGGLVCTSCS
EHPVVNNKLCEYLLALREGDWPYINESDESLRGQARNFVFEYTQWHIDHP
LKSLKIVAKSW
>TWT709 recR, recombination protein
MYVRIVQDLIRELGKLPGIGPKSAQRITFFILQNPSFDIDRLSETLQSVR
KQVQFCKVCGNFSEEDECVICSDPRRDRGVICVVEEPKDVVAIEKTREFS
GLYHVLGGAISPIDGVGPDDLNIRQLLQRLADGTITEVVLATDPNMEGEA
TASYIARVISAMRIRVSKLASGLPVGSDLEYADEITLGRALEGRQYIN
>TWT239 rnhA, ribonuclease H
MTNNEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAV
RELLIATRHTDRPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQ
EIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQAANNFSTRSAHI
PGPGWTERSAK
>TWT268 ruvA, holliday junction DNA helicase RuvA
MAISTRGQFDRAGSVSVCICIACARGLALIASLSGLLEAVRPGSVVVNMH
GIGFLVRVPQSFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFEQL
ITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGTIV
LQLAGKLTSVPLENRKQEQAVDRSAEIVQALIGLGWQRQESAAAVESVLE
KDQSLTMPEILRNALRYLAKQE
>TWT269 ruvB, holliday junction binding protein RuvB
MPLDILQNRNNLLDVTSDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQA
AKIQGRVTDHALLAGPPGLGKTTLAMIVAAECGVSIRMSSGPAIQHAGDL
AALLSSLLPGELLFIDEIHRMSRVAEEMLYLAMEDFRIDIMVGKGPGATS
VPLELSPFTLVGATTRAGLLPGPLRDRFGFTARLDFYSPEELLQVLIRSA
RLMEIQYYDDALESIAVRSRGTPRVANRLLRRTRDYLLVSNSSEILSKEI
ALKAMDVYEVDSLGLDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAET
IENSIEPFLVRQGLLVRTPRGRQITDLARKHMGFKEDLSGFELYL
>TWT267 ruvC, crossover junction endodeoxyribonuclease
MRIMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIG
DSLLSMLEEFSPDLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHI
AFHTPSEIKASICGYGNAKKDQIRSMVNRVFLSQDIPLRHDASDALALAV
CCARRYALHNEHFTEARLRWLSALGASSTERGR
>TWT453 smf, nucleotide-binding protein
MKNIISTLNLPDREVISAVKPLCFSEELSEDQAVDYFARAAWSLISEPGD
RIAGRLISCMTAPRALGWLLGNISLPFTLDEFESQQLEKHRSVWKMRADY
QQLLKSFQAAHHTGAKLVVTDKYNKLQDEKPHILWVRGNSPSILLDTSQK
VSIVGTRCCSYYGKSVTADISYSLARKNYVIVSGGALGIDGTAHMSALSA
GKSTIVFFAGGVDWIYPRGNEALFSKICESGIIVSEMPCGSRPTKWRFLR
RNRLIAAIPSAVVVTEAAARSGSISTAYHAADVQVPVGAVPGPINSPLSE
GCNRLIRDRIAESVTCADDVVGLFAPLVVSPIQKDSFGLQASRIRVIDAL
SKKYDRDISEICRLSGMLFDDVSSLMRLLELSGQVIRSGSGWRLSGRLR
>TWT107 ssb, single-strand binding protein
MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEP
LFLRGILWREYAINAAASLAKGMRVVAVGKLKQRNYETREGDRRTSVELE
IDEIGPTLRYATAKCSRATQAGHGVSPDPWADSQGSQGIDSHTTRSEEIT
ENAKNGEGAGKNELNKKVLVGDNVSYEDFDSDEVPF
>TWT403 ssb, single-strand binding protein
MRGKRMNHITVSGLVATEPRSFLTAEGVHITSFRLAAQDRHFSRNANSWV
SGDTNWFTVTGFRALGSNAAESISKGDRVIVYGRLRLRTWGDNKMAVEIE
AESFGHDLRWGTSVFSKRFYQLPEASDNLRTKYDVDEAETPEIHAKAA
>TWT696 topA, DNA topoisomerase I
MKKLVIVESPTKVSSVGRYLGDGYVVMSSVGHIRDLPAPSGLTPDLKRSA
HAQFAVNIENDFEPYYVVLENKKKVVEELQSALNNSDELLIATDGDREGE
AIAWHLVQVLKPTVPVRRLVFHEITREAIAYALQHPRPIDENLVDAQEAR
RILDRLYGYELSPVLWKKVRPGLSAGRVQSPATRLLVDRERERINFKSAE
YQAVTADFQVDSDVFSASLTLFGERKIATGRDFDNLANLKTDALVLDKNL
TDRILEELKSKGALDVEAIDSKPYSRNPYAPFITSTLQQDAAHKLGFSAK
RTMRTAQQLYEKGFITYMRTDSPRLSLQAISAARAQVELLYGREFLPDSP
RTYGAKAKNAQEAHEAIRPTGEVFERPESIESVLSVDCMRLYDLIWRRTI
ASQMVSARGETVTLTLSARIPERSIFVLSGTVLHEKGFLKVYEGLQDLNS
KLLPNLQVGDQVTLVDVRAVGHTTLPPPRYTEASLVKVLEELGLGRPSTY
ALILSTIQERGYAHLRNRMLVPDWLAFSVVNLLENFFSRLIDYDFTANLE
DQLDEIALGSQNRSDWLRKFYFGDDNLPGLKEIISGAKDIDARAINSIPM
VGATLRVGRYGPYLEVGDKRFSIPHDVYPDALTPEKIHELVNQPESPVRE
LGAHPETGKLVVLKSGRFGPYIEEVSDEKNVRRSSLFKNMDPEEVNLDVA
VKLLEIPRVIGVNQENGEKVIACNGRFGPYIKCGKETRPLDSEDDILSVT
LDEALAILSAPKVRRSRVLMEFPTDDPVTRRAVQIKSGRFGPYVTDGVTN
ATLDNTSWEDVTFDEAVSLLAEKRQRVDGDLDQETAEKIHV
>TWT182 trcF, transcription-repair coupling factor
MPGILFNIAWPYKSPADNLTCPTNSTHTYPHKIPLHGQLDKGFLNLLAAI
EAFIPTGFAATACPGGFSACKVASLVGDVDSLLVILPSEDACFTDTLRTY
LPESIILNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKNNKRAKNA
QTSKTLHDIGILEDNLPTIHQKLVVVASIKAFMQPIISDGNPPCLYFHTG
GEYELSEIANILVAMSYSRTDLVGARGEFAIRGGILDIYPPTEKHPIRIE
FFGRQLESMRHFRVSDQRSIGPYVSNNAHVGMFAQYQDNSVCKCNVSLSS
NPHRCASHLSINNTYKPSAVMAPASEALIVYPTSEFPEEDQINNITPKSL
LHFMPGKSTVVVIKCEQLTSKIEQLINTNREFSEAFCTPDAFSATNKYAR
NNHDGDNTLDGIAEKINYYTLEGLRHFAADLGIGWTDLSGFNSEDEKSLI
TANPDFSGYSVFDHIRNLQKSGWQIVLASTNNRVYPTLDEYGIDYLILSA
NTDYSSFEECRECSTRQESPQVMCTPSITQSCTHDRTGAQQKSYISDLFF
KQADPDAVDSGLIKHRVVVIDSYIQEGFSVPTKSFTLIGEHELFGKTTLQ
KAPRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDAPEQEYLI
LEYAKNRLGVADKLYIPTDQLSMISKYIGSDRPTLSRIGGSDWALTKSRA
RKAISSIALDLVKLYSRRSITKGYAFSPDTPFQTHFENEFLYTETRDQEK
TIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAVLVP
TTLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGISSGGIDIV
IGTHMLLNKKIQFKDLGLLIIDEEHRFGVNHKEAIKKLKIGIDILAMSAT
PIPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIAAVRREII
RGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERMLEKTVIDF
WEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQLRGRVGRGT
KRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLELRGAGSLL
GHAQSGHIASVGFDLYIRMVTDAISNFKGEQSRTNNLRLEIPVDASIPKA
YVDSERLRIELYKKISEALSDADIKDIGDEILDRFGNLPSQVINLLELAR
LRILASSRGIDLITLKSDFRQGGDVVTVSPVSFSDTAHQNLLRDGQFSFI
CYRNSKLSACINRSSSEHSGYSEHSAQIINSIRHFIITSCN
>TWT582 ung, uracil-DNA glycosylase
MGYLHVLAQRGVIHATWVSALEPVSSNLAAMGDCLRSLRSKGESFLPAPR
NILRAFRYPFDSVRVLIVGQDPYPTQGHPIGLSFAVDHKVRPLPGSLQNI
YTEYRSDLNLDPPQHGDISLWSERGVMLLNRTLTVRPGIPSSHRGLGWEE
ITQTAVRALAARDVPLIAILWGRHAQELKSVLQSDRVAILESVHPSPMSA
TRGFFGSKPFSKANDLLRDLGSAPIDWRLT
>TWT296 uvrA, excinuclease ABC subunit A
MSSRRSFLRVKNARVHNLKNLNVRIPRNSMTVFTGLSGSGKSSLAFDTIF
AEGQRRYIESLSAYARQFLERLDRPEVDSIDGLSPSVAIDQKTTSRNPRS
TVGTVTEIFDYLRLLWARVGVLHCPECDLPVQKQTIQQIVDSIAKIPHGE
RFMLLSPLVRQKKGEFVDLFSRLTTSGFSRVVVDEEIYLLTEVPKLKKNS
RHTIKVVVDRLVSEDNMLTRLTDSIETAFGLSNICEVQTFKGDVFRFSIN
SACPNLHFLNFDKIEPRTFSFNSPVGACPDCDGIGTVRSVNMTTLVPDIQ
LSVEKIALDLIGKKIVSKNFMREISALARNLKFTLNTPWSDLTDYVQNTI
LHAKNFLLHNTRVRYYTGLVRKIERDVSENSGGSLSGYLYNSPCRSCSGK
RLRASSLCVKVSNKNIIDVCDMPLDGILHFFKALDIPRKFEKISSPILRE
IISRLEFLIELGLGYLTLSRSITTISGGESQRIRLATQIGSGLTEVLYVL
DEPSIGLHKRDNEKLIKLLLNLRNRGNTLIVVEHDEETIRSSDWIVDIGP
GAGRMGGQVVYSGPVGKMPSRSLTGKYLSGELMVSTPKKRRVSSCGITLS
GAKENNLKNITVFFPLKTFIVITGVSGSGKSTLVNSVLCKALSNICKGNT
PSENNCQDADCTDACTVRNGMQHNEQTVRLAPALDGAENISKVVHIDQKP
IGRTPRSNLATYTGVFDKIRDIFSKTPTARARGYSPGRFSFNLKGGRCEK
CKGDGCIKVEMNFLPDVYVDCEDCNGMRYNRDTLQVLYNNMSIHDVLTMP
VCEAVEFFRAIPSIHQPLKLMDEIGLGYMTLGQPAPTLSGGEAQRIKLAA
QLQKRTAQDVLYVLDEPTTGLHFHDVRQLLEILHRLVDNGNTVIVIEHNL
DVIKTADHVIDMGPEGGNAGGSVVACGTPEEVALHPDSATGYFLKKCL
>TWT295 uvrB, excinuclease ABC subunit B
MYKNLHPKYFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGK
SATIAWLIEKLARPTLIIAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDY
YQPEAYVPKTDTFIEKDASVNSEVERLRHRATTSLLTRRDVIVVATVSCI
YGLGAPSEYLKAGFRLEVGQKISQRVLLERFTQLQYNRNDVGFERGNFRV
RGDTIEIIPVYEEYTVRIEMWGDEIERVLCLHPVTGNVLSEQRGVLIFPA
SHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIEL
MEQLGFCSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQ
IGSMHAGDFSRKKALVENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATP
GKYELSKSDGVVEQIIRPTGLVDPKITVKPIKGQIDDLLEEIRKRKLLSE
RVLVTTLTKRMAEELTDFLSEAGVNVSYLHSDIDTLHRVELLTSLRMGRI
DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSFIQTIGRAARHVS
GEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSDIT
EVLSRPSRKIDCTILDSLPDPKIDGKQIKSHIKSLEAKMYMAAESLMFEE
AAELRDEIQSLKEKFLKPRGSGGKIKQ
>TWT297 uvrC, excinuclease ABC subunit C
MYPPRRIEIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRR
ISYMLSISKKVGWTCVADDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFL
AVTIGEQVPRLLITRRKIQYATHFGPYPKVFHLRETVSLLHKIFQIRTCS
PTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQKRIKNLMAFLEGQS
SSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDETVSA
DFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQ
VYDKLSLPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERR
LLETVKDNALSELERHRLRRSSDYTERHRSLFELQKYLNLNSLPVRIECF
DISHLLGTNTSGSMVVFENGEPKKSAYRHFNIHIDQNNDTASMFSLICRR
LRSLESVAQDSPDYPHLMIIDGGKPQLSAAVGALQEVGLKIPVFALSKRL
EELWSPGVKTSLILPPNSESLFLLQKIRDESHRFALKQQTRRREAYLTSE
LFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISALPGFGVKTAEKIKEC
AEAFSLK
>TWT517 uvrD, DNA helicase II
MTIDVFSGLSDQQCDAVRTLRGPVKIIAGAGSGKTLTITRRIVNGIISNE
YDSGHVMALSFTRRASMQLRSRLVEHGVKGVYSGTFHSAALSQLRFFWET
FHGKPPRQIIRDKVNLLRDAARGINFSFSDESLCQVASEIEWAKQNGYDL
SGYDKCNHRISGMSASQARTLMLAYEDVKNNRRLIDFEDILSLTVGMLSV
QPRAVARVRDRFRVFLIDEFQDVSPLQFELLRIWLGRRRDICVVGDPNQC
IYSFAGAKRDYLVKFADYFPGAREVFLSRNYRSRPEIVCLSRHIIDSHSP
DIGLYQPTEGISRNYADTKTATPAQDMRVNAGNRAKCHCTAPPGTKGAVR
CGNSDLGYRETPIRWHTFENQIQEMHFIAQSLKNISQSCAVLYRTAIQGE
RLAKYLHTSGIIYRSQESRLFHETDVAQIACKRVIEKTIECNVRVVDLVD
SVVSGIFPRKPDALTGEYDGWVALQALRLCARRFNGNASSFATYLLEMQR
HRREPEMPFATLATLHSTKGLEWDTVYIIGVNEGLIPHHTGDEDEEKRLF
YVGVTRARKNIVFSSTRTPSRYLTELCLSPISAKE
>TWT452 xerC, integrase/recombinase
MLDKGSLKRSVCPCGDTLNEGFCCLIREFIIYLENVRGYSSHTCRAYYRD
LMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYSQSHKSARSIRRAVSSL
KSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILGNFSHTV
PVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRV
VLFGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSE
LLEMPKGPRGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHV
SLERLISSYNQAHPRA
>TWT097 xerD, integrase/recombinase
MSKNTVTKVADIAIPPDIKPDFDWFFPFAKLELGLSDATLQTYRNSLGIY
LSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAALRTFHRHL
VLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAADTNQAREISLR
DRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGS
YARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVL
TATAAGVPWLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSF
ATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYATSHPRAL
>TWT643 xseA, exodeoxyribonuclease VII large subunit
MDMQADEMYRQDPLGSCGNPRQVSHITGRLSSLLGELPATWIEGEVTQLS
PRRIGVFLTLKDMNESKHLEFFLPFDAFKDEVEVGNRVKIHGKLEFWATS
GQIKVKGFEIQSVGIGELIERIARLRVQLALEGLYEHKRPLPFIPKLIGL
VTGQNSDAEKDVVTNVLLRWPAAKFCTIYASMQGASCVSETISAIQKLDA
NNDVDVIIVARGGGSFHDLIGFSDEQMIRAVFAIKTPLISAIGHEADRPI
LDEVADLRASTPTDAAKRVVPDIADEKRLIKSAMSFLKKSYEPVIDKIKC
DTLSWSQAFSNPFETFIAPRRREIDLFYQQMLTVVWANFSKTETEIAAIK
KHLLAISPQNTLVRGYAMIEDETGRIISSADKLSAGDTVTLRLHDGLVRA
EITQ
>TWT644 xseB, exodeoxyribonuclease VII small subunit
MFALGGIVYLENNDNVGDGVNEESVHSNNTQTNNKPVHTNGEVSAVTGGN
CASYEEARDRLQEILRKLQEPSQSLEASLKLWEEGRLLVGYCEEVLQDAM
KRLNYGDTTNPEDASLKESEA
>TWT444 xthA, exodeoxyribonuclease III
MVYHLCVRVGTWNVNSIRARLERVLAWLKNECIDVAALQETKVRTGDFPV
DAFRDAGYYSEAHGLRGFEGVAIVSRFPIRRVTVNIPRAPGFLSDRWGTD
IPQEARAISATTGGIRLYSLYVPNGREVGSPHFEYKLAWLKALASHVRTV
LRRTPGIPLMLVGDFNIVTCEQDTADPDFQLPNDITCSGPEREAFQAILD
TGMFDLIRPFAPIGFTSWSYQRQRFQNNQGLRIDFMLGSDSVQRRTIWGE
IDRVQRRHLFGLTPSDHAPLVSVIDPPRRTFRRDD