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2024-05-10 21:28:05

Gene list

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COG category: Replication, recombination and repair
Organism: Tropheryma whipplei str. Twist, twist

Number of genes found: 63

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Hide UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Tropheryma whipplei str. Twist, twist
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA TWT520 DNA helicaseSubName: Full=DNA helicase; EC=3.6.1.-; chromosome CDS625195 2982 - 0.437626
NA TWT098 unknownSubName: Full=Uncharacterized protein; chromosome CDS110980 609 - 0.486043
NA TWT744 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS854399 810 + 0.475309
NA TWT694 putative DNA polymerase III delta' subunitSubName: Full=Putative DNA polymerase III delta subunit; EC=2.7.7.7; chromosome CDS807760 1236 - 0.46521
NA TWT704 unknownSubName: Full=Uncharacterized protein; chromosome CDS816228 264 - 0.412879
NA TWT375 unknownRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS462235 438 - 0.479452
NA TWT669 unknownSubName: Full=Uncharacterized protein; chromosome CDS781717 3519 - 0.460642
NA TWT455 unknownRecName: Full=UPF0102 protein TWT_455; chromosome CDS547619 540 - 0.414815
NA TWT021 unknownSubName: Full=Uncharacterized protein; chromosome CDS22687 453 + 0.494481
NA TWT359 putative primosomal protein N'SubName: Full=Putative primosomal protein N; chromosome CDS443605 1875 - 0.4192
NA TWT091 unknownSubName: Full=Uncharacterized protein; chromosome CDS100773 1638 - 0.459707
NA TWT325 deoxyribonucleaseSubName: Full=Deoxyribonuclease; EC=3.1.21.-; chromosome CDS406082 987 - 0.442756
NA TWT389 unknownSubName: Full=Uncharacterized protein; chromosome CDS479587 1209 + 0.419355
NA TWT396 putative DNA glycosylaseSubName: Full=Putative DNA glycosylase; EC=3.2.-.-; chromosome CDS485944 885 - 0.490395
NA TWT636 putative methyltransferaseSubName: Full=Putative methyltransferase; EC=2.1.1.-; chromosome CDS751129 564 - 0.473404
NA TWT519 putative DNA helicase IISubName: Full=Putative DNA helicase II; EC=3.6.1.-; chromosome CDS622277 2922 - 0.438741
NA TWT118 DNA helicaseSubName: Full=DNA helicase; chromosome CDS135378 2097 + 0.486886
NA TWT597 putative serine/threonine-protein kinaseSubName: Full=Putative serine/threonine-protein kinase; EC=2.7.1.-; chromosome CDS689321 1197 - 0.444444
NA TWT771 DNA modification methyltransferaseSubName: Full=DNA modification methyltransferase; EC=2.1.1.-; chromosome CDS888333 882 + 0.459184
NA TWT685 putative exodeoxyribonucleaseSubName: Full=Putative exodeoxyribonuclease; EC=3.1.11.2; chromosome CDS799585 846 + 0.478723
comEA TWT384 comE operon protein 1-like proteinSubName: Full=ComE operon protein 1-like protein; chromosome CDS472137 582 - 0.408935
dnaA TWT001 chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1 1437 + 0.388309
dnaC TWT738 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS850444 1326 + 0.46908
dnaE TWT510 DNA polymerase III alpha chainSubName: Full=DNA polymerase III alpha chain; EC=2.7.7.7; chromosome CDS610276 3495 - 0.448927
dnaG TWT288 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS369484 1812 + 0.448675
dnaN TWT002 DNA polymerase III beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1767 1134 + 0.378307
dnaZX TWT710 DNA polymerase III gamma and tau subunitSubName: Full=DNA polymerase III gamma and tau subunit; EC=2.7.7.7; chromosome CDS823521 1569 - 0.459528
gyrA1 TWT006 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS6438 2460 + 0.492683
gyrA2 TWT491 DNA gyrase subunit A-like proteinSubName: Full=DNA gyrase subunit A-like protein; EC=5.99.1.3; chromosome CDS582973 2475 + 0.439192
gyrB1 TWT005 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS4485 1950 + 0.47641
gyrB2 TWT494 DNA gyrase subunit B-like proteinSubName: Full=DNA gyrase subunit B-like protein; EC=5.99.1.3; chromosome CDS589731 1989 - 0.457516
holA TWT381 DNA polymerase III delta subunitSubName: Full=DNA polymerase III delta subunit; chromosome CDS468899 930 - 0.477419
hup TWT116 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS132952 282 + 0.521277
ligA TWT414 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS504463 1905 - 0.437795
ogt TWT465 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS554898 555 + 0.418018
pcrA TWT080 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS88753 2232 + 0.449821
pknA TWT777 serine/threonine-protein kinaseSubName: Full=Serine/threonine-protein kinase; EC=2.7.1.-; chromosome CDS893838 1758 + 0.506826
polA TWT292 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS374893 1071 + 0.436975
recA TWT611 recombinase ARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS716670 1344 - 0.488839
recF TWT003 recF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS2890 1092 + 0.388278
recG TWT566 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; chromosome CDS658215 2307 - 0.465106
recN TWT102 recombination and DNA repair proteinRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS115849 1638 - 0.448718
recO TWT285 DNA repair proteinRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS366476 786 + 0.46056
recR TWT709 recombination proteinRecName: Full=Recombination protein RecR; chromosome CDS822916 597 - 0.479062
rnhA TWT239 ribonuclease HRecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS322955 486 - 0.475309
ruvA TWT268 holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS351182 669 + 0.4858
ruvB TWT269 holliday junction binding protein RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS351819 1038 + 0.477842
ruvC TWT267 crossover junction endodeoxyribonucleaseRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS350676 552 + 0.467391
smf TWT453 nucleotide-binding proteinSubName: Full=Nucleotide-binding protein; chromosome CDS544870 1200 - 0.48
ssb TWT403 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein 2; Short=SSB 2; chromosome CDS493612 447 - 0.47651
ssb TWT107 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein 1; Short=SSB 1; chromosome CDS126132 561 - 0.513369
topA TWT696 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS809819 2526 - 0.488519
trcF TWT182 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS228490 3876 + 0.432147
ung TWT582 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS671320 693 - 0.503608
uvrA TWT296 excinuclease ABC subunit ASubName: Full=Excinuclease ABC subunit A; chromosome CDS380362 2847 + 0.425711
uvrB TWT295 excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS378317 2034 + 0.417896
uvrC TWT297 excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS383217 1824 + 0.421053
uvrD TWT517 DNA helicase IISubName: Full=DNA helicase II; EC=3.6.1.-; chromosome CDS619240 1758 - 0.466439
xerC TWT452 integrase/recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS543913 951 - 0.466877
xerD TWT097 integrase/recombinaseRecName: Full=Tyrosine recombinase XerC; chromosome CDS108152 1050 - 0.478095
xseA TWT643 exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS758153 1215 + 0.446091
xseB TWT644 exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS759416 366 + 0.461749
xthA TWT444 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS537211 858 - 0.496504