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2024-05-19 08:37:55

Gene list

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COG category: Replication, recombination and repair
Organism: Listeria monocytogenes str. 4b F2365, 4b F2365

Number of genes found: 124

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Listeria monocytogenes str. 4b F2365, 4b F2365
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA LMOf2365_2255 Ser/Thr protein phosphatase family proteinSubName: Full=Ser/Thr protein phosphatase family protein; chromosome CDS2306573 1236 - 0.365696
NA LMOf2365_1995 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS2026612 558 - 0.394265
NA LMOf2365_2279 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2330973 657 - 0.39726
NA LMOf2365_0384 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS407726 510 + 0.394118
NA LMOf2365_1666 SbcC exonuclease family proteinSubName: Full=SbcC exonuclease family protein; chromosome CDS1670217 3072 - 0.380534
NA LMOf2365_0198 primase-related proteinRecName: Full=Ribonuclease M5; EC=3.1.26.8; AltName: Full=RNase M5; AltName: Full=Ribosomal RNA terminal maturase M5; chromosome CDS197375 576 + 0.418403
NA LMOf2365_1500 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1493965 1032 - 0.343992
NA LMOf2365_1528 putative helicase, RecD/TraA familySubName: Full=Putative helicase, RecD/TraA family; chromosome CDS1519683 2397 - 0.403004
NA LMOf2365_1533 ATPase, AAA family domain proteinSubName: Full=ATPase, AAA family domain protein; chromosome CDS1526308 1284 - 0.411994
NA LMOf2365_0745 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS756768 282 + 0.333333
NA LMOf2365_0849 putative transposase OrfA, IS3 familySubName: Full=Putative transposase OrfA, IS3 family; chromosome CDS863344 285 + 0.284211
NA LMOf2365_1604 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS1604024 999 - 0.372372
NA LMOf2365_0172 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS163118 2340 + 0.393162
NA LMOf2365_0118 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS118038 1518 - 0.357049
NA LMOf2365_0327 C-5 cytosine-specific DNA methylase family proteinRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS346513 1410 + 0.329787
NA LMOf2365_1521 conserved hypothetical protein TIGR00250RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1511426 417 - 0.41247
NA LMOf2365_0832 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS841870 369 + 0.455285
NA LMOf2365_2656 ImpB/MucB/SamB family proteinSubName: Full=ImpB/MucB/SamB family protein; chromosome CDS2700725 1257 + 0.414479
NA LMOf2365_1583 DNA replication protein DnaBSubName: Full=DNA replication protein DnaB; chromosome CDS1578140 1362 - 0.392805
NA LMOf2365_1998 putative DNA-damage-inducible protein PRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS2029316 1071 - 0.394958
NA LMOf2365_0863 excinuclease ABC subunit C domain proteinSubName: Full=Excinuclease ABC subunit C domain protein; chromosome CDS884114 1101 + 0.35059
NA LMOf2365_2703 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS2751088 966 - 0.273292
NA LMOf2365_1503 DNA-binding protein, ComEA familySubName: Full=DNA-binding protein, ComEA family; chromosome CDS1497953 636 - 0.366352
NA LMOf2365_1273 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS1263626 462 + 0.350649
NA LMOf2365_1237 putative ribonuclease HIIIRecName: Full=Ribonuclease HIII; Short=RNase HIII; EC=3.1.26.4; chromosome CDS1230497 882 - 0.408163
NA LMOf2365_0181 conserved hypothetical proteinRecName: Full=UPF0213 protein LMOf2365_0181; chromosome CDS174723 270 + 0.37037
NA LMOf2365_1328 SNF2 family domain proteinSubName: Full=SNF2 family domain protein; chromosome CDS1317425 1200 - 0.316667
NA LMOf2365_0157 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS153075 369 + 0.406504
NA LMOf2365_1910 5'-3' exonuclease family proteinSubName: Full=5-3 exonuclease family protein; chromosome CDS1935238 873 - 0.406644
NA LMOf2365_2347 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS2405671 1371 - 0.266958
NA LMOf2365_1971 putative ATP-dependent DNA helicase RecQSubName: Full=Putative ATP-dependent DNA helicase RecQ; chromosome CDS1997853 1404 - 0.366809
NA LMOf2365_1667 putative exonuclease SbcDSubName: Full=Putative exonuclease SbcD; chromosome CDS1673285 1125 - 0.403556
NA LMOf2365_1693 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS1704562 474 - 0.396624
NA LMOf2365_0437 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS454903 300 - 0.363333
NA LMOf2365_1117 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1129785 918 + 0.28976
NA LMOf2365_1469 putative ATP-dependent RNA helicaseSubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS1461798 1308 - 0.374618
NA LMOf2365_1292 Smf family proteinSubName: Full=Smf family protein; chromosome CDS1279009 861 + 0.358885
NA LMOf2365_0477 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS492547 504 + 0.327381
NA LMOf2365_2679 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS2727725 447 - 0.362416
NA LMOf2365_1804 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1835259 351 + 0.34188
NA LMOf2365_0690 endonuclease III domain proteinRecName: Full=Endonuclease III; EC=4.2.99.18; chromosome CDS707837 630 + 0.366667
NA LMOf2365_2051 putative transposase OrfA, IS3 familySubName: Full=Putative transposase OrfA, IS3 family; chromosome CDS2088198 267 - 0.340824
NA LMOf2365_2084 putative methyltransferaseSubName: Full=Putative methyltransferase; chromosome CDS2124757 558 - 0.378136
NA LMOf2365_1643 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS1642303 414 - 0.359903
NA LMOf2365_0499 putative transposase OrfA, IS3 familySubName: Full=Putative transposase OrfA, IS3 family; chromosome CDS518151 267 + 0.337079
NA LMOf2365_0884 ATP-dependent RNA helicase DeaDSubName: Full=ATP-dependent RNA helicase DeaD; chromosome CDS905902 1560 + 0.432692
NA LMOf2365_0949 putative DNA-3-methyladenine glycosylaseRecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS966209 624 + 0.399038
NA LMOf2365_1928 ATP-dependent helicase DinGSubName: Full=ATP-dependent helicase DinG; chromosome CDS1953158 2787 - 0.383208
NA LMOf2365_1746 helicase domain proteinSubName: Full=Helicase domain protein; chromosome CDS1764136 1329 - 0.388262
NA LMOf2365_0475 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS490530 579 + 0.328152
NA LMOf2365_0692 putative transposase OrfA, IS3 familySubName: Full=Putative transposase OrfA, IS3 family; chromosome CDS709593 282 + 0.315603
NA LMOf2365_2812 cell wall surface anchor family proteinRecName: Full=Internalin-J; Flags: Precursor; chromosome CDS2867614 2751 + 0.379862
NA LMOf2365_1262 MutT/nudix family proteinSubName: Full=MutT/nudix family protein; chromosome CDS1255023 477 + 0.362683
NA LMOf2365_2417 glycosyl hydrolase, family 31SubName: Full=Glycosyl hydrolase, family 31; chromosome CDS2465092 3933 - 0.41495
NA LMOf2365_1665 helicase, Snf2 familySubName: Full=Helicase, Snf2 family; chromosome CDS1666915 3219 - 0.379932
NA LMOf2365_1916 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1941478 1149 - 0.416884
NA LMOf2365_2727 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2774016 291 - 0.37457
NA LMOf2365_2486 helicase family proteinSubName: Full=Helicase family protein; chromosome CDS2546223 1320 - 0.392424
NA LMOf2365_0196 deoxyribonuclease, TatD familySubName: Full=Deoxyribonuclease, TatD family; chromosome CDS194958 798 + 0.389724
NA LMOf2365_2847 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2904530 471 - 0.288747
NA LMOf2365_0647 protein kinase domain proteinSubName: Full=Protein kinase domain protein; chromosome CDS663918 1143 - 0.36308
NA LMOf2365_0325 putative type II restriction enzyme Sau3AISubName: Full=Putative type II restriction enzyme Sau3AI; chromosome CDS344509 1668 - 0.303957
ada LMOf2365_0093 Ada regulatory proteinSubName: Full=Ada regulatory protein; EC=2.1.1.63; chromosome CDS90096 1053 + 0.415954
addA LMOf2365_2300 ATP-dependent nuclease, subunit ARecName: Full=ATP-dependent helicase/nuclease subunit A; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddA; chromosome CDS2347731 3708 - 0.341154
addB LMOf2365_2301 ATP-dependent nuclease, subunit BRecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddB; chromosome CDS2351440 3474 - 0.344272
dbpA LMOf2365_1260 ATP-dependent RNA helicase DbpARecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS1253155 1413 + 0.367304
dnaA LMOf2365_0001 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS319 1356 + 0.375369
dnaB LMOf2365_0063 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS63468 1353 + 0.423503
dnaD LMOf2365_1924 DNA replication protein DnaDSubName: Full=DNA replication protein DnaD; chromosome CDS1949150 720 - 0.381944
dnaE LMOf2365_1596 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1593206 3327 - 0.392846
dnaG LMOf2365_1474 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1467401 1881 - 0.376927
dnaI LMOf2365_1582 primosomal protein DnaISubName: Full=Primosomal protein DnaI; chromosome CDS1577207 924 - 0.387446
dnaN LMOf2365_0002 DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1868 1146 + 0.342932
dnaX LMOf2365_2684 DNA polymerase III, gamma and tau subunitsSubName: Full=DNA polymerase III, gamma and tau subunits; EC=2.7.7.7; chromosome CDS2730487 1740 - 0.435057
drrC LMOf2365_2081 daunorubicin resistance proteinSubName: Full=Daunorubicin resistance protein; chromosome CDS2120930 2241 + 0.404284
exoA LMOf2365_1807 exodeoxyribonucleaseSubName: Full=Exodeoxyribonuclease; EC=3.1.11.2; chromosome CDS1837532 756 + 0.37963
gyrA LMOf2365_0007 DNA gyrase, A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS8065 2529 + 0.40174
gyrB LMOf2365_0006 DNA gyrase, B subunitRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS6030 1941 + 0.402885
holB LMOf2365_0177 DNA polymerase III, delta subunitSubName: Full=DNA polymerase III, delta subunit; EC=2.7.7.7; chromosome CDS171698 993 + 0.416918
hup LMOf2365_1963 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS1989300 276 - 0.373188
ligA LMOf2365_1783 DNA ligase, NAD-dependentRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1807614 2016 - 0.407242
mfd LMOf2365_0225 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS223056 3540 + 0.410452
mutL LMOf2365_1423 DNA mismatch repair protein MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1412552 1812 + 0.378587
mutM LMOf2365_1586 formamidopyrimidine-DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1580683 822 - 0.396594
mutS-1 LMOf2365_1241 DNA mismatch repair protein MutSRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS1234209 2358 + 0.409669
mutS-2 LMOf2365_1422 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1409950 2583 + 0.385211
mutY LMOf2365_1713 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS1734771 1089 - 0.386593
nfo LMOf2365_1468 endonuclease IVRecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS1460889 894 - 0.392617
nth LMOf2365_1923 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1948480 660 - 0.384848
ogt-1 LMOf2365_0600 methylated-DNA--protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS614786 297 - 0.451178
ogt-2 LMOf2365_1017 methylated-DNA--protein-cysteinemethyltransferaseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS1027006 480 + 0.377083
parC LMOf2365_1305 DNA topoisomerase IV, A subunitRecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1292634 2460 + 0.380081
parE LMOf2365_1304 DNA topoisomerase IV, B subunitRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1290670 1968 + 0.423272
pcrA LMOf2365_1784 ATP-dependent DNA helicase PcrASubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; chromosome CDS1809655 2202 - 0.399637
phrB LMOf2365_0617 deoxyribodipyrimidine photolyaseSubName: Full=Deoxyribodipyrimidine photolyase; EC=4.1.99.3; chromosome CDS635685 1404 + 0.393162
polA LMOf2365_1587 DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS1581528 2628 - 0.376712
polC LMOf2365_1337 DNA polymerase III, alpha chain, Gram-positive typeRecName: Full=DNA polymerase III PolC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS1326637 4335 + 0.39308
priA LMOf2365_1852 primosomal protein N`SubName: Full=Primosomal protein N; chromosome CDS1877905 2394 - 0.412698
radC LMOf2365_1569 DNA repair protein RadCRecName: Full=UPF0758 protein LMOf2365_1569; chromosome CDS1562949 675 - 0.365926
recA LMOf2365_1417 recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1405130 1047 + 0.391595
recF LMOf2365_0005 DNA replication and repair protein RecFRecName: Full=DNA replication and repair protein RecF; chromosome CDS4869 1113 + 0.391734
recG LMOf2365_1839 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS1864221 2049 - 0.410444
recN LMOf2365_1385 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1370411 1692 + 0.385343
recO LMOf2365_1479 recombination protein ORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1474020 768 - 0.365885
recQ LMOf2365_2745 ATP-dependent DNA helicase RecQSubName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.1.-; chromosome CDS2796480 1773 - 0.41286
recR LMOf2365_2682 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS2729435 597 - 0.396985
rnhA LMOf2365_1909 ribonuclease HISubName: Full=Ribonuclease HI; EC=3.1.26.4; chromosome CDS1934818 402 + 0.390547
rnhB LMOf2365_1291 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1278090 786 + 0.375318
ruvA LMOf2365_1552 holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1548128 606 - 0.381188
ruvB LMOf2365_1551 holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1547105 1008 - 0.40873
ssb-1 LMOf2365_0054 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS56117 537 + 0.409683
ssb-2 LMOf2365_2496 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS2556405 366 - 0.34153
tag LMOf2365_1661 DNA-3-methyladenine glycosylase ISubName: Full=DNA-3-methyladenine glycosylase I; EC=3.2.2.20; chromosome CDS1661882 582 - 0.381443
topA LMOf2365_1293 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1280142 2079 + 0.37518
topB LMOf2365_2744 DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS2794303 2154 - 0.406685
ung-1 LMOf2365_0402 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase 1; Short=UDG 1; EC=3.2.2.27; chromosome CDS423647 666 + 0.408408
ung-2 LMOf2365_1236 uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase 2; Short=UDG 2; EC=3.2.2.27; chromosome CDS1229785 675 + 0.388148
uvrA LMOf2365_2461 excinuclease ABC, A subunitRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS2517358 2871 - 0.38767
uvrB LMOf2365_2462 excinuclease ABC, B subunitRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS2520236 1977 - 0.400101
uvrC LMOf2365_1243 excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1237034 1812 + 0.39128
xerC LMOf2365_1295 integrase/recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS1283870 903 + 0.378738
xerD LMOf2365_1985 integrase/recombinase XerDRecName: Full=Tyrosine recombinase XerD; chromosome CDS2016993 894 - 0.39038
xseA LMOf2365_1378 exodeoxyribonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1364079 1353 + 0.391722
xseB LMOf2365_1379 exodeoxyribonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1365421 228 + 0.364035