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2024-05-06 13:31:58

Gene list

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COG category: Replication, recombination and repair
Organism: Listeria monocytogenes str. 4b F2365, 4b F2365

Number of genes found: 124

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Listeria monocytogenes str. 4b F2365, 4b F2365
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LMOf2365_0647 protein kinase domain proteinchromosome CDS663918 1143 - 0.36308
NA LMOf2365_1521 conserved hypothetical protein TIGR00250chromosome CDS1511426 417 - 0.41247
NA LMOf2365_0690 endonuclease III domain proteinchromosome CDS707837 630 + 0.366667
NA LMOf2365_1328 SNF2 family domain proteinchromosome CDS1317425 1200 - 0.316667
NA LMOf2365_2051 putative transposase OrfA, IS3 familychromosome CDS2088198 267 - 0.340824
NA LMOf2365_0384 MutT/nudix family proteinchromosome CDS407726 510 + 0.394118
NA LMOf2365_0477 hypothetical proteinchromosome CDS492547 504 + 0.327381
NA LMOf2365_1971 putative ATP-dependent DNA helicase RecQchromosome CDS1997853 1404 - 0.366809
NA LMOf2365_1500 conserved hypothetical proteinchromosome CDS1493965 1032 - 0.343992
NA LMOf2365_1666 SbcC exonuclease family proteinchromosome CDS1670217 3072 - 0.380534
NA LMOf2365_2279 conserved hypothetical proteinchromosome CDS2330973 657 - 0.39726
NA LMOf2365_1916 conserved hypothetical proteinchromosome CDS1941478 1149 - 0.416884
NA LMOf2365_1693 MutT/nudix family proteinchromosome CDS1704562 474 - 0.396624
NA LMOf2365_0181 conserved hypothetical proteinchromosome CDS174723 270 + 0.37037
NA LMOf2365_1273 MutT/nudix family proteinchromosome CDS1263626 462 + 0.350649
NA LMOf2365_0196 deoxyribonuclease, TatD familychromosome CDS194958 798 + 0.389724
NA LMOf2365_0327 C-5 cytosine-specific DNA methylase family proteinchromosome CDS346513 1410 + 0.329787
NA LMOf2365_0863 excinuclease ABC subunit C domain proteinchromosome CDS884114 1101 + 0.35059
NA LMOf2365_1533 ATPase, AAA family domain proteinchromosome CDS1526308 1284 - 0.411994
NA LMOf2365_2656 ImpB/MucB/SamB family proteinchromosome CDS2700725 1257 + 0.414479
NA LMOf2365_0475 hypothetical proteinchromosome CDS490530 579 + 0.328152
NA LMOf2365_1746 helicase domain proteinchromosome CDS1764136 1329 - 0.388262
NA LMOf2365_2847 conserved hypothetical proteinchromosome CDS2904530 471 - 0.288747
NA LMOf2365_2679 MutT/nudix family proteinchromosome CDS2727725 447 - 0.362416
NA LMOf2365_0437 conserved hypothetical proteinchromosome CDS454903 300 - 0.363333
NA LMOf2365_0745 conserved hypothetical proteinchromosome CDS756768 282 + 0.333333
NA LMOf2365_1998 putative DNA-damage-inducible protein Pchromosome CDS2029316 1071 - 0.394958
NA LMOf2365_2812 cell wall surface anchor family proteinchromosome CDS2867614 2751 + 0.379862
NA LMOf2365_2084 putative methyltransferasechromosome CDS2124757 558 - 0.378136
NA LMOf2365_1292 Smf family proteinchromosome CDS1279009 861 + 0.358885
NA LMOf2365_0172 conserved hypothetical proteinchromosome CDS163118 2340 + 0.393162
NA LMOf2365_2727 conserved hypothetical proteinchromosome CDS2774016 291 - 0.37457
NA LMOf2365_1667 putative exonuclease SbcDchromosome CDS1673285 1125 - 0.403556
NA LMOf2365_1237 putative ribonuclease HIIIchromosome CDS1230497 882 - 0.408163
NA LMOf2365_0198 primase-related proteinchromosome CDS197375 576 + 0.418403
NA LMOf2365_2255 Ser/Thr protein phosphatase family proteinchromosome CDS2306573 1236 - 0.365696
NA LMOf2365_0849 putative transposase OrfA, IS3 familychromosome CDS863344 285 + 0.284211
NA LMOf2365_0692 putative transposase OrfA, IS3 familychromosome CDS709593 282 + 0.315603
NA LMOf2365_1910 5'-3' exonuclease family proteinchromosome CDS1935238 873 - 0.406644
NA LMOf2365_1469 putative ATP-dependent RNA helicasechromosome CDS1461798 1308 - 0.374618
NA LMOf2365_1643 MutT/nudix family proteinchromosome CDS1642303 414 - 0.359903
NA LMOf2365_1995 MutT/nudix family proteinchromosome CDS2026612 558 - 0.394265
NA LMOf2365_1604 conserved domain proteinchromosome CDS1604024 999 - 0.372372
NA LMOf2365_1503 DNA-binding protein, ComEA familychromosome CDS1497953 636 - 0.366352
NA LMOf2365_0118 conserved hypothetical proteinchromosome CDS118038 1518 - 0.357049
NA LMOf2365_0832 conserved hypothetical proteinchromosome CDS841870 369 + 0.455285
NA LMOf2365_1262 MutT/nudix family proteinchromosome CDS1255023 477 + 0.362683
NA LMOf2365_1528 putative helicase, RecD/TraA familychromosome CDS1519683 2397 - 0.403004
NA LMOf2365_1665 helicase, Snf2 familychromosome CDS1666915 3219 - 0.379932
NA LMOf2365_2347 conserved domain proteinchromosome CDS2405671 1371 - 0.266958
NA LMOf2365_1117 hypothetical proteinchromosome CDS1129785 918 + 0.28976
NA LMOf2365_0499 putative transposase OrfA, IS3 familychromosome CDS518151 267 + 0.337079
NA LMOf2365_2703 conserved domain proteinchromosome CDS2751088 966 - 0.273292
NA LMOf2365_2417 glycosyl hydrolase, family 31chromosome CDS2465092 3933 - 0.41495
NA LMOf2365_1928 ATP-dependent helicase DinGchromosome CDS1953158 2787 - 0.383208
NA LMOf2365_0157 conserved hypothetical proteinchromosome CDS153075 369 + 0.406504
NA LMOf2365_0884 ATP-dependent RNA helicase DeaDchromosome CDS905902 1560 + 0.432692
NA LMOf2365_0949 putative DNA-3-methyladenine glycosylasechromosome CDS966209 624 + 0.399038
NA LMOf2365_2486 helicase family proteinchromosome CDS2546223 1320 - 0.392424
NA LMOf2365_1804 conserved hypothetical proteinchromosome CDS1835259 351 + 0.34188
NA LMOf2365_0325 putative type II restriction enzyme Sau3AIchromosome CDS344509 1668 - 0.303957
NA LMOf2365_1583 DNA replication protein DnaBchromosome CDS1578140 1362 - 0.392805
ada LMOf2365_0093 Ada regulatory proteinchromosome CDS90096 1053 + 0.415954
addA LMOf2365_2300 ATP-dependent nuclease, subunit Achromosome CDS2347731 3708 - 0.341154
addB LMOf2365_2301 ATP-dependent nuclease, subunit Bchromosome CDS2351440 3474 - 0.344272
dbpA LMOf2365_1260 ATP-dependent RNA helicase DbpAchromosome CDS1253155 1413 + 0.367304
dnaA LMOf2365_0001 chromosomal replication initiator protein DnaAchromosome CDS319 1356 + 0.375369
dnaB LMOf2365_0063 replicative DNA helicasechromosome CDS63468 1353 + 0.423503
dnaD LMOf2365_1924 DNA replication protein DnaDchromosome CDS1949150 720 - 0.381944
dnaE LMOf2365_1596 DNA polymerase III, alpha subunitchromosome CDS1593206 3327 - 0.392846
dnaG LMOf2365_1474 DNA primasechromosome CDS1467401 1881 - 0.376927
dnaI LMOf2365_1582 primosomal protein DnaIchromosome CDS1577207 924 - 0.387446
dnaN LMOf2365_0002 DNA polymerase III, beta subunitchromosome CDS1868 1146 + 0.342932
dnaX LMOf2365_2684 DNA polymerase III, gamma and tau subunitschromosome CDS2730487 1740 - 0.435057
drrC LMOf2365_2081 daunorubicin resistance proteinchromosome CDS2120930 2241 + 0.404284
exoA LMOf2365_1807 exodeoxyribonucleasechromosome CDS1837532 756 + 0.37963
gyrA LMOf2365_0007 DNA gyrase, A subunitchromosome CDS8065 2529 + 0.40174
gyrB LMOf2365_0006 DNA gyrase, B subunitchromosome CDS6030 1941 + 0.402885
holB LMOf2365_0177 DNA polymerase III, delta subunitchromosome CDS171698 993 + 0.416918
hup LMOf2365_1963 DNA-binding protein HUchromosome CDS1989300 276 - 0.373188
ligA LMOf2365_1783 DNA ligase, NAD-dependentchromosome CDS1807614 2016 - 0.407242
mfd LMOf2365_0225 transcription-repair coupling factorchromosome CDS223056 3540 + 0.410452
mutL LMOf2365_1423 DNA mismatch repair protein MutLchromosome CDS1412552 1812 + 0.378587
mutM LMOf2365_1586 formamidopyrimidine-DNA glycosylasechromosome CDS1580683 822 - 0.396594
mutS-1 LMOf2365_1241 DNA mismatch repair protein MutSchromosome CDS1234209 2358 + 0.409669
mutS-2 LMOf2365_1422 DNA mismatch repair protein MutSchromosome CDS1409950 2583 + 0.385211
mutY LMOf2365_1713 A/G-specific adenine glycosylasechromosome CDS1734771 1089 - 0.386593
nfo LMOf2365_1468 endonuclease IVchromosome CDS1460889 894 - 0.392617
nth LMOf2365_1923 endonuclease IIIchromosome CDS1948480 660 - 0.384848
ogt-1 LMOf2365_0600 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS614786 297 - 0.451178
ogt-2 LMOf2365_1017 methylated-DNA--protein-cysteinemethyltransferasechromosome CDS1027006 480 + 0.377083
parC LMOf2365_1305 DNA topoisomerase IV, A subunitchromosome CDS1292634 2460 + 0.380081
parE LMOf2365_1304 DNA topoisomerase IV, B subunitchromosome CDS1290670 1968 + 0.423272
pcrA LMOf2365_1784 ATP-dependent DNA helicase PcrAchromosome CDS1809655 2202 - 0.399637
phrB LMOf2365_0617 deoxyribodipyrimidine photolyasechromosome CDS635685 1404 + 0.393162
polA LMOf2365_1587 DNA polymerase Ichromosome CDS1581528 2628 - 0.376712
polC LMOf2365_1337 DNA polymerase III, alpha chain, Gram-positive typechromosome CDS1326637 4335 + 0.39308
priA LMOf2365_1852 primosomal protein N`chromosome CDS1877905 2394 - 0.412698
radC LMOf2365_1569 DNA repair protein RadCchromosome CDS1562949 675 - 0.365926
recA LMOf2365_1417 recA proteinchromosome CDS1405130 1047 + 0.391595
recF LMOf2365_0005 DNA replication and repair protein RecFchromosome CDS4869 1113 + 0.391734
recG LMOf2365_1839 ATP-dependent DNA helicase RecGchromosome CDS1864221 2049 - 0.410444
recN LMOf2365_1385 DNA repair protein RecNchromosome CDS1370411 1692 + 0.385343
recO LMOf2365_1479 recombination protein Ochromosome CDS1474020 768 - 0.365885
recQ LMOf2365_2745 ATP-dependent DNA helicase RecQchromosome CDS2796480 1773 - 0.41286
recR LMOf2365_2682 recombination protein RecRchromosome CDS2729435 597 - 0.396985
rnhA LMOf2365_1909 ribonuclease HIchromosome CDS1934818 402 + 0.390547
rnhB LMOf2365_1291 ribonuclease HIIchromosome CDS1278090 786 + 0.375318
ruvA LMOf2365_1552 holliday junction DNA helicase RuvAchromosome CDS1548128 606 - 0.381188
ruvB LMOf2365_1551 holliday junction DNA helicase RuvBchromosome CDS1547105 1008 - 0.40873
ssb-1 LMOf2365_0054 single-strand binding proteinchromosome CDS56117 537 + 0.409683
ssb-2 LMOf2365_2496 single-strand binding proteinchromosome CDS2556405 366 - 0.34153
tag LMOf2365_1661 DNA-3-methyladenine glycosylase Ichromosome CDS1661882 582 - 0.381443
topA LMOf2365_1293 DNA topoisomerase Ichromosome CDS1280142 2079 + 0.37518
topB LMOf2365_2744 DNA topoisomerase IIIchromosome CDS2794303 2154 - 0.406685
ung-1 LMOf2365_0402 uracil-DNA glycosylasechromosome CDS423647 666 + 0.408408
ung-2 LMOf2365_1236 uracil-DNA glycosylasechromosome CDS1229785 675 + 0.388148
uvrA LMOf2365_2461 excinuclease ABC, A subunitchromosome CDS2517358 2871 - 0.38767
uvrB LMOf2365_2462 excinuclease ABC, B subunitchromosome CDS2520236 1977 - 0.400101
uvrC LMOf2365_1243 excinuclease ABC, C subunitchromosome CDS1237034 1812 + 0.39128
xerC LMOf2365_1295 integrase/recombinase XerCchromosome CDS1283870 903 + 0.378738
xerD LMOf2365_1985 integrase/recombinase XerDchromosome CDS2016993 894 - 0.39038
xseA LMOf2365_1378 exodeoxyribonuclease VII, large subunitchromosome CDS1364079 1353 + 0.391722
xseB LMOf2365_1379 exodeoxyribonuclease VII, small subunitchromosome CDS1365421 228 + 0.364035