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2024-05-07 04:39:18

Gene list

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COG category: Replication, recombination and repair
Organism: Streptococcus pneumoniae TIGR4, TIGR4; ATCC BAA-334

Number of genes found: 144

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Streptococcus pneumoniae TIGR4, TIGR4; ATCC BAA-334
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SP_1485 IS3-Spn1, transposasechromosome CDS1397026 834 - 0.351319
NA SP_0624 conserved hypothetical proteinchromosome CDS591639 579 + 0.443869
NA SP_1991 putative hydrolasechromosome CDS1894395 774 - 0.452196
NA SP_0811 transposase family proteinchromosome CDS765527 510 + 0.382353
NA SP_0915 putative IS1239, transposasechromosome CDS868167 996 - 0.40261
NA SP_1147 integrase/recombinase, phage integrase family, truncationchromosome CDS1073640 249 - 0.389558
NA SP_1791 integrase-related proteinchromosome CDS1707036 117 - 0.350427
NA SP_1639 IS1167, transposasechromosome CDS1538071 1275 - 0.370196
NA SP_0802 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinGchromosome CDS755550 2451 + 0.402693
NA SP_1712 hypothetical proteinchromosome CDS1615682 1170 - 0.410256
NA SP_0740 MutT/nudix family proteinchromosome CDS702268 456 - 0.407895
NA SP_1969 putative type II DNA modification methyltransferasechromosome CDS1876348 540 - 0.446296
NA SP_0941 IS1381, transposase OrfBchromosome CDS891713 390 - 0.389744
NA SP_1086 IS1381, transposase OrfBchromosome CDS1021985 390 + 0.382051
NA SP_1783 MutT/nudix family proteinchromosome CDS1701406 429 - 0.410256
NA SP_1523 Snf2 family proteinchromosome CDS1430072 3099 - 0.440142
NA SP_0016 IS630-Spn1, transposase Orf2chromosome CDS20929 339 + 0.380531
NA SP_0989 MutT/nudix family proteinchromosome CDS933648 546 + 0.412088
NA SP_0406 MutS2 family proteinchromosome CDS384994 2337 + 0.451433
NA SP_0643 transposase family protein, truncationchromosome CDS611051 147 - 0.353741
NA SP_0086 IS630-Spn1, transposase Orf1, truncationchromosome CDS91751 177 + 0.350282
NA SP_1148 IS630-Spn1, transposase Orf2chromosome CDS1073986 339 - 0.383481
NA SP_0344 IS630-Spn1, transposase Orf2chromosome CDS318978 339 - 0.371681
NA SP_0575 putative helicasechromosome CDS541218 1647 + 0.379478
NA SP_2138 IS1381, transposase OrfBchromosome CDS2049407 390 + 0.382051
NA SP_1266 putative DNA processing protein DprAchromosome CDS1199284 861 - 0.41115
NA SP_1149 IS630-Spn1, transposase Orf1chromosome CDS1074433 417 - 0.357314
NA SP_0373 conserved hypothetical proteinchromosome CDS351083 1158 + 0.442142
NA SP_0917 pilin gene inverting-related proteinchromosome CDS871310 717 - 0.365411
NA SP_1444 IS1167, transposasechromosome CDS1363255 1257 + 0.368337
NA SP_1586 putative ATP-dependent RNA helicasechromosome CDS1489766 1575 - 0.435556
NA SP_0538 IS1381, transposase OrfBchromosome CDS514553 390 + 0.384615
NA SP_1137 putative GTP-binding proteinchromosome CDS1068083 885 + 0.353672
NA SP_2015 IS630-Spn1, transposase Orf1chromosome CDS1921596 417 - 0.354916
NA SP_1235 MutT/nudix family proteinchromosome CDS1166750 468 - 0.433761
NA SP_1442 IS66 family element, Orf2chromosome CDS1362492 351 - 0.401709
NA SP_1582 IS1167, transposasechromosome CDS1486593 1257 + 0.372315
NA SP_0819 IS630-Spn1, transposase Orf2chromosome CDS769728 324 + 0.376543
NA SP_0300 IS630-Spn1, transposase Orf2chromosome CDS275816 339 + 0.39233
NA SP_0401 putative helicasechromosome CDS379812 2367 - 0.445712
NA SP_1792 IS1167, transposasechromosome CDS1707173 1257 - 0.369133
NA SP_1790 ATPase, AAA familychromosome CDS1705345 1272 + 0.478774
NA SP_1129 integrase/recombinase, phage integrase familychromosome CDS1063231 1164 - 0.371134
NA SP_2045 conserved hypothetical proteinchromosome CDS1949121 954 - 0.415094
NA SP_2014 IS630-Spn1, transposase Orf2chromosome CDS1921149 339 - 0.380531
NA SP_0345 IS630-Spn1, transposase Orf1chromosome CDS319495 348 - 0.362069
NA SP_1064 transposase, IS200 familychromosome CDS999422 474 + 0.367089
NA SP_1622 transposase, IS200 familychromosome CDS1522724 474 + 0.367089
NA SP_0836 IS1167, transposasechromosome CDS784413 1257 - 0.373111
NA SP_1061 putative protein kinasechromosome CDS996190 1347 + 0.27023
NA SP_0993 exonucleasechromosome CDS935894 591 + 0.399323
NA SP_1535 conserved hypothetical proteinchromosome CDS1445448 300 - 0.423333
NA SP_1222 putative type II restriction endonucleasechromosome CDS1154767 1878 - 0.350373
NA SP_1496 transposase, IS630-Spn1 related, Orf2chromosome CDS1404942 300 - 0.376667
NA SP_1575 conserved hypothetical proteinchromosome CDS1481465 678 - 0.430678
NA SP_1483 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS1395293 1083 + 0.409049
NA SP_1877 integrase/recombinase, phage integrase familychromosome CDS1780719 741 - 0.426451
NA SP_0890 integrase/recombinase, phage integrase familychromosome CDS838526 966 + 0.360248
NA SP_1806 conserved domain proteinchromosome CDS1720589 240 - 0.358333
NA SP_0901 hypothetical proteinchromosome CDS856151 312 + 0.349359
NA SP_1596 IS3-Spn1, hypothetical protein, interruptionchromosome CDS1500752 255 - 0.294118
NA SP_0036 conserved hypothetical proteinchromosome CDS37334 771 + 0.415045
NA SP_0817 MutT/nudix family proteinchromosome CDS768665 423 - 0.394799
NA SP_0274 DNA polymerase III, alpha subunit, Gram-positive typechromosome CDS250618 4392 + 0.444444
NA SP_0761 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS719900 1344 + 0.406994
NA SP_0460 IS1167, transposasechromosome CDS434770 1269 - 0.379039
NA SP_1990 primase-related proteinchromosome CDS1893835 561 - 0.465241
NA SP_2212 transposase family protein, truncationchromosome CDS2132190 246 + 0.386179
NA SP_1431 putative type II DNA modification methyltransferasechromosome CDS1349751 1191 + 0.276238
NA SP_0275 conserved hypothetical proteinchromosome CDS255111 264 + 0.397727
NA SP_1612 conserved domain proteinchromosome CDS1512877 993 + 0.29708
NA SP_0299 IS630-Spn1, transposase Orf1chromosome CDS275290 348 + 0.362069
NA SP_1195 IS1381, transposase OrfBchromosome CDS1130500 390 - 0.384615
NA SP_0119 MutT/nudix family proteinchromosome CDS122320 456 + 0.445175
NA SP_1302 conserved hypothetical proteinchromosome CDS1231825 252 - 0.392857
NA SP_1040 site-specific recombinase, resolvase familychromosome CDS979223 1680 + 0.335714
NA SP_1159 integrase/recombinase, phage integrase familychromosome CDS1094109 1071 + 0.38282
NA SP_1136 conserved domain proteinchromosome CDS1067625 447 + 0.389262
NA SP_0015 IS630-Spn1, transposase Orf1chromosome CDS20404 417 + 0.354916
NA SP_0193 chromosome pseudo182284 420 + 0.416667
NA SP_1262 IS1167, transposasechromosome CDS1193814 1257 + 0.368337
NA SP_0569 type II DNA modification methyltransferase, truncationchromosome CDS535337 165 + 0.351515
NA SP_2079 IS1381, transposase OrfBchromosome CDS1990129 390 - 0.387179
NA SP_1928 IS1381, transposase OrfBchromosome CDS1835344 390 + 0.387179
NA SP_1344 conserved hypothetical proteinchromosome CDS1267611 2610 - 0.326437
NA SP_2208 putative helicasechromosome CDS2128404 1299 - 0.401078
NA SP_0506 integrase/recombinase, phage integrase familychromosome CDS487391 798 + 0.302005
NA SP_1692 IS1167, transposasechromosome CDS1593972 1257 + 0.368337
NA SP_0794 MutT/nudix family proteinchromosome CDS747422 501 + 0.393214
NA SP_0363 transposase family protein, truncationchromosome CDS337984 267 + 0.382022
celA SP_0954 competence protein CelAchromosome CDS901982 651 + 0.448541
comX1 SP_0014 transcriptional regulator ComX1chromosome CDS14450 480 + 0.375
comX2 SP_2006 transcriptional regulator ComX2chromosome CDS1914134 480 - 0.375
dinP SP_0458 DNA-damage inducible protein Pchromosome CDS430899 1035 - 0.410628
dnaA SP_0001 chromosomal replication initiator protein DnaAchromosome CDS197 1362 + 0.364905
dnaC SP_2203 replicative DNA helicasechromosome CDS2123163 1353 - 0.413895
dnaE SP_0895 DNA polymerase III, alpha subunitchromosome CDS847061 3129 + 0.395334
dnaG SP_1072 DNA primasechromosome CDS1008420 1761 + 0.420216
dnaI SP_1711 primosomal protein DnaIchromosome CDS1614785 897 - 0.430323
dnaN SP_0002 DNA polymerase III, beta subunitchromosome CDS1717 1137 + 0.343008
dnaX SP_0865 DNA polymerase III, gamma and tau subunitschromosome CDS811494 1656 + 0.419082
exoA SP_1845 exodeoxyribonucleasechromosome CDS1753187 828 + 0.456522
fpg SP_0970 formamidopyrimidine-DNA glycosylasechromosome CDS916687 825 + 0.44
gyrA SP_1219 DNA gyrase, A subunitchromosome CDS1147390 2469 - 0.431754
gyrB SP_0806 DNA gyrase subunit Bchromosome CDS760488 1947 + 0.424756
hexB SP_0173 DNA mismatch repair protein HexBchromosome CDS165751 1950 + 0.461026
holA SP_0765 DNA polymerase III, delta subunitchromosome CDS724170 1038 + 0.391137
holB SP_0936 DNA polymerase III, delta prime subunitchromosome CDS888105 891 + 0.409652
hup SP_1113 DNA-binding protein HUchromosome CDS1042099 276 + 0.40942
ligA SP_1117 DNA ligase, NAD-dependentchromosome CDS1046918 1959 + 0.437979
mfd SP_0006 transcription-repair coupling factorchromosome CDS4952 3510 + 0.350142
mutX SP_1168 mutator MutT proteinchromosome CDS1104364 465 - 0.447312
mutY SP_1228 A/G-specific adenine glycosylasechromosome CDS1160215 1146 - 0.427574
nth SP_1279 endonuclease IIIchromosome CDS1214431 630 - 0.444444
ogt SP_1463 methylated-DNA--protein-cysteineS-methyltransferasechromosome CDS1377651 531 - 0.427495
parC SP_0855 topoisomerase IV, subunit Achromosome CDS800700 2472 + 0.438916
parE SP_0852 topoisomerase IV, subunit Bchromosome CDS798337 1944 + 0.451132
pcrA SP_1087 ATP-dependent DNA helicase PcrAchromosome CDS1022565 2292 + 0.433246
polA SP_0032 DNA polymerase Ichromosome CDS31535 2634 + 0.437737
priA SP_1736 primosomal protein N'chromosome CDS1639684 2397 - 0.465999
radC SP_1088 DNA repair protein RadCchromosome CDS1024899 681 + 0.408223
recA SP_1940 recA proteinchromosome CDS1843413 1167 - 0.419023
recF SP_2227 DNA replication and repair protein RecFchromosome CDS2144824 1098 + 0.343352
recG SP_1697 ATP-dependent DNA helicase RecGchromosome CDS1600953 2016 - 0.464782
recJ SP_0611 single-stranded-DNA-specific exonuclease RecJchromosome CDS577452 2223 + 0.435448
recN SP_1202 DNA repair protein RecNchromosome CDS1135216 1668 - 0.416067
recR SP_1672 recombination protein RecRchromosome CDS1572389 597 - 0.440536
rexA SP_1152 exonuclease RexAchromosome CDS1078629 3651 + 0.434402
rexB SP_1151 exonuclease RexBchromosome CDS1075357 3276 + 0.430098
rnhB SP_1156 ribonuclease HIIchromosome CDS1091180 780 + 0.411538
rnhC SP_0403 ribonuclease HIIIchromosome CDS383075 882 - 0.44898
ruvA SP_0179 Holliday junction DNA helicase RuvAchromosome CDS171843 594 + 0.436027
ruvB SP_0259 Holliday junction DNA helicase RuvBchromosome CDS231600 999 + 0.454454
spn5252IMP SP_1336 type II DNA modification methyltransferase Spn5252IPchromosome CDS1258315 1224 - 0.39951
ssb SP_1540 single-strand binding proteinchromosome CDS1448867 471 - 0.435244
ssbB SP_1908 single-strand DNA-binding proteinchromosome CDS1822440 396 - 0.436869
tag SP_0180 DNA-3-methyladenine glycosylase Ichromosome CDS172473 537 + 0.465549
topA SP_1263 DNA topoisomerase Ichromosome CDS1195085 2100 - 0.428571
ung SP_1169 uracil-DNA glycosylasechromosome CDS1104838 654 - 0.440367
uvrA SP_0186 excinuclease ABC, subunit Achromosome CDS176877 2832 + 0.472811
uvrB SP_1238 excinuclease ABC, subunit Bchromosome CDS1168313 1989 - 0.450478
uvrC SP_0618 excinuclease ABC, subunit Cchromosome CDS585747 1845 + 0.446612
xseA SP_1207 exodeoxyribonuclease VII, large subunitchromosome CDS1139184 1341 - 0.432513
xseB SP_1206 exodeoxyribonuclease VII, small subunitchromosome CDS1138994 213 - 0.408451