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2024-05-18 18:55:22

Gene list

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COG category: Replication, recombination and repair
Organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586, ATCC 25586

Number of genes found: 161

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Fusobacterium nucleatum subsp. nucleatum ATCC 25586, ATCC 25586
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
FN0001 Chromosomal replication initiator protein dnaASubName: Full=Chromosomal replication initiator protein dnaA; chromosome CDS639955 1914 - 0.208986
FN0019 Transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS656689 2946 + 0.254922
FN0028 TransposaseSubName: Full=Transposase; chromosome CDS665053 1476 + 0.258808
FN0038 unknownSubName: Full=Uncharacterized protein; chromosome CDS678287 303 - 0.283828
FN0039 DNA primase (bacterial type) and small primase-like proteinsRecName: Full=Ribonuclease M5; EC=3.1.26.8; AltName: Full=RNase M5; AltName: Full=Ribosomal RNA terminal maturase M5; chromosome CDS678751 552 - 0.300725
FN0047 Exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS684567 762 + 0.296588
FN0057 Endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS693355 606 + 0.318482
FN0117 O6-methylguanine-DNA methyltransferaseSubName: Full=O6-methylguanine-DNA methyltransferase; EC=2.1.1.63; chromosome CDS750478 513 + 0.263158
FN0135 TransposaseSubName: Full=Transposase; chromosome CDS770378 288 + 0.215278
FN0137 TransposaseSubName: Full=Transposase; chromosome CDS771104 237 + 0.28692
FN0138 TransposaseSubName: Full=Transposase; chromosome CDS771378 123 + 0.284553
FN0139 Transposase chromosome CDS771530 171 + 0.25731
FN0140 TransposaseSubName: Full=Transposase; chromosome CDS772269 819 - 0.247863
FN0159 unknownSubName: Full=Uncharacterized protein; chromosome CDS787472 918 + 0.229847
FN0161 RNA-directed DNA polymeraseSubName: Full=RNA-directed DNA polymerase; EC=2.7.7.49; chromosome CDS788903 1050 + 0.208571
FN0185 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS809357 1203 - 0.242727
FN0214 Crossover junction endodeoxyribonuclease ruvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS838758 573 - 0.277487
FN0224 Excinuclease ABC subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS849742 1992 + 0.289157
FN0264 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS891002 390 + 0.325641
FN0268 DNA repair protein recNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS894470 1677 + 0.267144
FN0269 TransposaseSubName: Full=Transposase; chromosome CDS896181 726 + 0.202479
FN0274 TransposaseSubName: Full=Transposase; chromosome CDS900375 201 - 0.228856
FN0275 TransposaseSubName: Full=Transposase; chromosome CDS900697 954 - 0.252621
FN0281 DNA polymerase III alpha subunitRecName: Full=DNA polymerase III polC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS907855 4365 - 0.286369
FN0297 ATPase associated with chromosome architecture/replicationSubName: Full=ATPase associated with chromosome architecture/replication; chromosome CDS930038 1224 + 0.278595
FN0344 MethyltransferaseSubName: Full=Methyltransferase; EC=2.1.1.-; chromosome CDS976712 1140 - 0.274561
FN0372 TransposaseSubName: Full=Transposase; chromosome CDS1001088 1482 - 0.25641
FN0374 Single-stranded-DNA-specific exonuclease recJSubName: Full=Single-stranded-DNA-specific exonuclease recJ; EC=3.1.-.-; chromosome CDS1002794 2535 + 0.233531
FN0402 Integrase/recombinase chromosome CDS1040448 177 + 0.242938
FN0403 TransposaseSubName: Full=Transposase; chromosome CDS1040916 1482 - 0.255061
FN0412 Recombination protein recRRecName: Full=Recombination protein RecR; chromosome CDS1048689 594 + 0.282828
FN0414 ATP-dependent helicase HEPASubName: Full=ATP-dependent helicase HEPA; chromosome CDS1050314 3045 + 0.248933
FN0416 Type III restriction-modification system methylation subunitSubName: Full=Type III restriction-modification system methylation subunit; EC=2.1.1.72; chromosome CDS1054440 1578 + 0.256654
FN0446 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1085859 3606 + 0.232668
FN0448 DNA-repair proteinSubName: Full=DNA-repair protein; chromosome CDS1091230 1578 + 0.262991
FN0450 ABC transporter ATP-binding proteinSubName: Full=ABC transporter ATP-binding protein; chromosome CDS1092975 2016 + 0.251488
FN0462 DNA mismatch repair protein mutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1107324 1932 + 0.258799
FN0485 TransposaseSubName: Full=Transposase; chromosome CDS1130407 510 + 0.245098
FN0486 TransposaseSubName: Full=Transposase; chromosome CDS1131159 612 + 0.269608
FN0509 TransposaseSubName: Full=Transposase; chromosome CDS1158974 1176 - 0.262755
FN0522 Exonuclease SBCCSubName: Full=Exonuclease SBCC; EC=3.1.11.-; chromosome CDS1173055 2766 - 0.211858
FN0523 Exonuclease SBCDSubName: Full=Exonuclease SBCD; EC=3.1.11.-; chromosome CDS1176102 876 - 0.25
FN0524 DNA helicase IISubName: Full=DNA helicase II; EC=3.6.1.-; chromosome CDS1176974 2760 - 0.224638
FN0529 TransposaseSubName: Full=Transposase; chromosome CDS1184978 1482 - 0.25641
FN0536 DNA polymerase III, beta chainSubName: Full=DNA polymerase III, beta chain; EC=2.7.7.7; chromosome CDS1190096 1146 - 0.217277
FN0545 Lipopolysaccharide core biosynthesis protein rfaYSubName: Full=Lipopolysaccharide core biosynthesis protein rfaY; chromosome CDS1198181 597 + 0.227806
FN0547 RecA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1199783 1146 + 0.332461
FN0564 unknownSubName: Full=Uncharacterized protein; chromosome CDS1216556 552 - 0.213768
FN0571 DNA processing chain ASubName: Full=DNA processing chain A; chromosome CDS1221536 915 + 0.219672
FN0574 Hypothetical cytosolic proteinSubName: Full=Hypothetical cytosolic protein; chromosome CDS1223661 1683 + 0.212715
FN0578 ATP-dependent DNA helicase recQSubName: Full=ATP-dependent DNA helicase recQ; EC=3.6.1.-; chromosome CDS1228081 1845 + 0.276965
FN0592 ATP-dependent DNA helicase pcrASubName: Full=ATP-dependent DNA helicase pcrA; EC=3.6.1.-; chromosome CDS1245852 2208 + 0.254529
FN0599 TransposaseSubName: Full=Transposase; chromosome CDS1253973 1287 + 0.24864
FN0617 DNA polymerase III, beta chainSubName: Full=DNA polymerase III, beta chain; EC=2.7.7.7; chromosome CDS1276692 1095 - 0.244749
FN0622 8-oxoguanine DNA glycosylaseRecName: Full=Probable N-glycosylase/DNA lyase; Includes: RecName: Full=8-oxoguanine DNA glycosylase; EC=3.2.2.-; Includes: RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; Short=AP lyase; EC=4.2.99.18; chromosome CDS1281418 654 + 0.253823
FN0633 Replication proteinSubName: Full=Replication protein; chromosome CDS1291068 1245 + 0.176707
FN0693 DNA mismatch repair protein mutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS1347536 2691 + 0.25864
FN0698 DNA integration/recombination/invertion proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1356751 417 + 0.270983
FN0705 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS1362209 2736 + 0.26133
FN0723 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1381668 1857 + 0.239634
FN0743 ATP-dependent helicase, DinG familySubName: Full=ATP-dependent helicase, DinG family; chromosome CDS1400990 2226 + 0.255166
FN0747 Phosphohydrolase (MUTT/NUDIX family protein)SubName: Full=Phosphohydrolase (MUTT/NUDIX family protein); chromosome CDS1405829 516 - 0.251938
FN0760 unknownSubName: Full=Uncharacterized protein; chromosome CDS1417948 813 - 0.216482
FN0773 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1429414 282 + 0.237589
FN0786 TransposaseSubName: Full=Transposase; chromosome CDS1442605 510 + 0.252941
FN0787 TransposaseSubName: Full=Transposase; chromosome CDS1443345 624 + 0.283654
FN0805 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1464922 756 - 0.227513
FN0818 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS1476849 276 - 0.278986
FN0833 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1494993 1620 + 0.223457
FN0837 Integrase/recombinaseSubName: Full=Integrase/recombinase; chromosome CDS1499265 987 + 0.247214
FN0840 TransposaseSubName: Full=Transposase; chromosome CDS1501501 510 + 0.24902
FN0841 TransposaseSubName: Full=Transposase; chromosome CDS1502241 624 + 0.274038
FN0850 Hypothetical cytosolic proteinSubName: Full=Hypothetical cytosolic protein; chromosome CDS1509053 591 + 0.218274
FN0874 Phosphohydrolase (MUTT/NUDIX family protein)SubName: Full=Phosphohydrolase (MUTT/NUDIX family protein); chromosome CDS1534462 516 - 0.275194
FN0895 unknownSubName: Full=Uncharacterized protein; chromosome CDS1554999 465 - 0.217204
FN0898 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1556716 1872 + 0.20406
FN0901 DNA polymerase, bacteriophage-typeSubName: Full=DNA polymerase, bacteriophage-type; chromosome CDS1560112 588 + 0.263605
FN0909 DNA repair protein radCRecName: Full=UPF0758 protein FN0909; chromosome CDS1567046 699 - 0.234621
FN0917 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1572735 969 + 0.205366
FN0931 Phosphohydrolase (MUTT/NUDIX family protein)SubName: Full=Phosphohydrolase (MUTT/NUDIX family protein); chromosome CDS1584023 618 - 0.245955
FN0949 DNA helicaseSubName: Full=DNA helicase; chromosome CDS1602572 4278 - 0.251987
FN1024 DNA-binding protein HUSubName: Full=DNA-binding protein HU; chromosome CDS1678262 309 - 0.307443
FN1066 Exodeoxyribonuclease VII large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1711992 1215 + 0.260905
FN1068 Smf proteinSubName: Full=Smf protein; chromosome CDS1713951 867 + 0.28143
FN1069 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1714872 2271 + 0.255834
FN1071 Integrase/recombinaseSubName: Full=Integrase/recombinase; chromosome CDS1718572 873 + 0.214204
FN1090 Excinuclease ABC subunit CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1734041 1770 + 0.253107
FN1103 Excinuclease ABC subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS1746699 2883 + 0.284773
FN1104 Holliday junction DNA helicase ruvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1749593 585 + 0.22906
FN1108 Phosphohydrolase (MUTT/NUDIX family protein)SubName: Full=Phosphohydrolase (MUTT/NUDIX family protein); chromosome CDS1752450 489 + 0.253579
FN1149 ATP-dependent nuclease subunit ASubName: Full=ATP-dependent nuclease subunit A; chromosome CDS1799367 3171 - 0.210659
FN1150 unknownSubName: Full=Uncharacterized protein; chromosome CDS1802530 2712 - 0.202802
FN1156 Primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS1811733 2301 + 0.236419
FN1160 SWF/SNF family helicaseSubName: Full=SWF/SNF family helicase; chromosome CDS1815976 3270 + 0.229664
FN1176 Hypothetical cytosolic proteinRecName: Full=CRISPR-associated endoribonuclease Cas2; EC=3.1.-.-; chromosome CDS1837596 321 - 0.246106
FN1177 Hypothetical proteinRecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS1837879 1017 - 0.235988
FN1178 Hypothetical cytosolic proteinSubName: Full=Hypothetical cytosolic protein; chromosome CDS1838883 495 - 0.240404
FN1181 unknownSubName: Full=Uncharacterized protein; chromosome CDS1843060 903 - 0.272425
FN1183 Hypothetical cytosolic proteinSubName: Full=Hypothetical cytosolic protein; chromosome CDS1845518 753 - 0.26162
FN1188 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1850920 498 + 0.242972
FN1196 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1856602 534 - 0.209738
FN1197 unknownSubName: Full=Uncharacterized protein; chromosome CDS1857125 642 - 0.250779
FN1199 DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS1859201 1053 + 0.237417
FN1217 Holliday junction DNA helicase ruvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1876689 999 - 0.299299
FN1226 Uracil-DNA glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS1884913 681 - 0.28047
FN1240 Lipopolysaccharide core biosynthesis protein rfaYSubName: Full=Lipopolysaccharide core biosynthesis protein rfaY; chromosome CDS1897147 723 - 0.22545
FN1259 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1915223 594 + 0.277778
FN1304 Single-strand DNA binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS1960389 465 - 0.313978
FN1319 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1972476 1812 - 0.240066
FN1328 Exodeoxyribonuclease VII small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; chromosome CDS1983007 213 - 0.234742
FN1329 MethyltransferaseSubName: Full=Methyltransferase; EC=2.1.1.-; chromosome CDS1983432 549 - 0.269581
FN1339 TransposaseSubName: Full=Transposase; chromosome CDS1991809 1482 + 0.254386
FN1343 seC-independent protein TATDSubName: Full=SeC-independent protein TATD; EC=3.1.21.-; chromosome CDS1996546 777 - 0.290862
FN1357 TransposaseSubName: Full=Transposase; chromosome CDS2008329 1176 + 0.260204
FN1367 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2017628 606 - 0.234323
FN1370 EndonucleaseRecName: Full=UPF0102 protein FN1370; chromosome CDS2019080 360 - 0.252778
FN1371 Ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS2019445 648 - 0.28858
FN1383 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; chromosome CDS2034545 3402 - 0.264256
FN1386 SWF/SNF family helicaseSubName: Full=SWF/SNF family helicase; chromosome CDS2040278 2679 - 0.238895
FN1442 TransposaseSubName: Full=Transposase; chromosome CDS2110245 624 - 0.283654
FN1443 TransposaseSubName: Full=Transposase; chromosome CDS2111099 510 - 0.252941
FN1445 DNA helicaseSubName: Full=DNA helicase; chromosome CDS2113464 2550 + 0.267059
FN1447 TransposaseSubName: Full=Transposase; chromosome CDS2116779 624 + 0.270833
FN1479 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2160793 567 - 0.222222
FN1492 DNA repair protein recORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2172859 702 - 0.226496
FN1511 TransposaseSubName: Full=Transposase; chromosome CDS14357 1482 + 0.255061
FN1527 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS42273 390 - 0.282051
FN1530 TransposaseSubName: Full=Transposase; chromosome CDS43765 357 + 0.277311
FN1575 Hypothetical cytosolic proteinRecName: Full=UPF0213 protein FN1575; chromosome CDS86283 303 - 0.234323
FN1576 ATPases and helicase subunits involved in DNA replicationSubName: Full=ATPases and helicase subunits involved in DNA replication; chromosome CDS86595 870 - 0.222989
FN1581 DNA mismatch repair protein mutSRecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS90985 2337 - 0.285409
FN1611 Competence proteinSubName: Full=Competence protein; chromosome CDS120687 480 - 0.2375
FN1654 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS149253 1716 - 0.238928
FN1660 ATP-dependent DNA helicase recGSubName: Full=ATP-dependent DNA helicase recG; EC=3.6.1.-; chromosome CDS155929 2070 - 0.27971
FN1663 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS160454 1371 - 0.244347
FN1675 TransposaseSubName: Full=Transposase; chromosome CDS172296 273 - 0.285714
FN1676 TransposaseSubName: Full=Transposase; chromosome CDS172879 1176 + 0.253401
FN1677 TransposaseSubName: Full=Transposase; chromosome CDS174159 156 - 0.269231
FN1680 TransposaseSubName: Full=Transposase; chromosome CDS176061 285 - 0.266667
FN1717 NAD-dependent DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS213290 2091 + 0.281683
FN1719 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS218088 720 + 0.281944
FN1720 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS218861 729 - 0.201646
FN1815 TransposaseSubName: Full=Transposase; chromosome CDS295716 336 - 0.267857
FN1827 Replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS315989 1341 - 0.284116
FN1830 DNA polymerase III subunits gamma and tauSubName: Full=DNA polymerase III subunits gamma and tau; EC=2.7.7.7; chromosome CDS318661 1455 - 0.268041
FN1864 DNA mismatch repair protein mutSSubName: Full=DNA mismatch repair protein mutS; chromosome CDS354768 1464 - 0.239754
FN1883 TransposaseSubName: Full=Transposase; chromosome CDS369003 1176 + 0.261054
FN1887 TransposaseSubName: Full=Transposase; chromosome CDS371811 510 + 0.237255
FN1888 TransposaseSubName: Full=Transposase; chromosome CDS372551 342 + 0.274854
FN1889 Transposase chromosome CDS372950 138 + 0.231884
FN1922 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS417723 1803 - 0.223516
FN1923 Adenine-specific methyltransferaseSubName: Full=Adenine-specific methyltransferase; EC=2.1.1.72; chromosome CDS419697 1491 - 0.235412
FN1935 Adenine-specific methyltransferaseSubName: Full=Adenine-specific methyltransferase; EC=2.1.1.72; chromosome CDS436150 1002 - 0.240519
FN1974 DNA/RNA helicase (DEAD/DEAH BOX family)SubName: Full=DNA/RNA helicase (DEAD/DEAH BOX family); chromosome CDS472788 2829 - 0.247084
FN1975 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS475739 1587 + 0.276623
FN2018 Single-stranded-DNA-specific exonuclease recJSubName: Full=Single-stranded-DNA-specific exonuclease recJ; EC=3.1.-.-; chromosome CDS520347 1671 - 0.274686
FN2074 BslIMSubName: Full=BslIM; chromosome CDS584336 2031 - 0.223535
FN2078 Transcriptional regulator, DeoR familySubName: Full=Transcriptional regulator, DeoR family; chromosome CDS589514 843 - 0.231317
FN2125 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS633815 2436 - 0.291051
FN2126 DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS636396 1920 - 0.297917
FN2128 RECF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS638566 1110 - 0.224324