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2024-05-05 13:17:42

Gene list

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COG category: Replication, recombination and repair
Organism: Fusobacterium nucleatum subsp. nucleatum ATCC 25586, ATCC 25586

Number of genes found: 161

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Fusobacterium nucleatum subsp. nucleatum ATCC 25586, ATCC 25586
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
FN0001 Chromosomal replication initiator protein dnaAchromosome CDS639955 1914 - 0.208986
FN0019 Transcription-repair coupling factorchromosome CDS656689 2946 + 0.254922
FN0028 Transposasechromosome CDS665053 1476 + 0.258808
FN0038 unknownchromosome CDS678287 303 - 0.283828
FN0039 DNA primase (bacterial type) and small primase-like proteinschromosome CDS678751 552 - 0.300725
FN0047 Exodeoxyribonuclease IIIchromosome CDS684567 762 + 0.296588
FN0057 Endonuclease IIIchromosome CDS693355 606 + 0.318482
FN0117 O6-methylguanine-DNA methyltransferasechromosome CDS750478 513 + 0.263158
FN0135 Transposasechromosome CDS770378 288 + 0.215278
FN0137 Transposasechromosome CDS771104 237 + 0.28692
FN0138 Transposasechromosome CDS771378 123 + 0.284553
FN0139 Transposasechromosome CDS771530 171 + 0.25731
FN0140 Transposasechromosome CDS772269 819 - 0.247863
FN0159 unknownchromosome CDS787472 918 + 0.229847
FN0161 RNA-directed DNA polymerasechromosome CDS788903 1050 + 0.208571
FN0185 Hypothetical proteinchromosome CDS809357 1203 - 0.242727
FN0214 Crossover junction endodeoxyribonuclease ruvCchromosome CDS838758 573 - 0.277487
FN0224 Excinuclease ABC subunit Bchromosome CDS849742 1992 + 0.289157
FN0264 Hypothetical proteinchromosome CDS891002 390 + 0.325641
FN0268 DNA repair protein recNchromosome CDS894470 1677 + 0.267144
FN0269 Transposasechromosome CDS896181 726 + 0.202479
FN0274 Transposasechromosome CDS900375 201 - 0.228856
FN0275 Transposasechromosome CDS900697 954 - 0.252621
FN0281 DNA polymerase III alpha subunitchromosome CDS907855 4365 - 0.286369
FN0297 ATPase associated with chromosome architecture/replicationchromosome CDS930038 1224 + 0.278595
FN0344 Methyltransferasechromosome CDS976712 1140 - 0.274561
FN0372 Transposasechromosome CDS1001088 1482 - 0.25641
FN0374 Single-stranded-DNA-specific exonuclease recJchromosome CDS1002794 2535 + 0.233531
FN0402 Integrase/recombinasechromosome CDS1040448 177 + 0.242938
FN0403 Transposasechromosome CDS1040916 1482 - 0.255061
FN0412 Recombination protein recRchromosome CDS1048689 594 + 0.282828
FN0414 ATP-dependent helicase HEPAchromosome CDS1050314 3045 + 0.248933
FN0416 Type III restriction-modification system methylation subunitchromosome CDS1054440 1578 + 0.256654
FN0446 Hypothetical proteinchromosome CDS1085859 3606 + 0.232668
FN0448 DNA-repair proteinchromosome CDS1091230 1578 + 0.262991
FN0450 ABC transporter ATP-binding proteinchromosome CDS1092975 2016 + 0.251488
FN0462 DNA mismatch repair protein mutLchromosome CDS1107324 1932 + 0.258799
FN0485 Transposasechromosome CDS1130407 510 + 0.245098
FN0486 Transposasechromosome CDS1131159 612 + 0.269608
FN0509 Transposasechromosome CDS1158974 1176 - 0.262755
FN0522 Exonuclease SBCCchromosome CDS1173055 2766 - 0.211858
FN0523 Exonuclease SBCDchromosome CDS1176102 876 - 0.25
FN0524 DNA helicase IIchromosome CDS1176974 2760 - 0.224638
FN0529 Transposasechromosome CDS1184978 1482 - 0.25641
FN0536 DNA polymerase III, beta chainchromosome CDS1190096 1146 - 0.217277
FN0545 Lipopolysaccharide core biosynthesis protein rfaYchromosome CDS1198181 597 + 0.227806
FN0547 RecA proteinchromosome CDS1199783 1146 + 0.332461
FN0564 unknownchromosome CDS1216556 552 - 0.213768
FN0571 DNA processing chain Achromosome CDS1221536 915 + 0.219672
FN0574 Hypothetical cytosolic proteinchromosome CDS1223661 1683 + 0.212715
FN0578 ATP-dependent DNA helicase recQchromosome CDS1228081 1845 + 0.276965
FN0592 ATP-dependent DNA helicase pcrAchromosome CDS1245852 2208 + 0.254529
FN0599 Transposasechromosome CDS1253973 1287 + 0.24864
FN0617 DNA polymerase III, beta chainchromosome CDS1276692 1095 - 0.244749
FN0622 8-oxoguanine DNA glycosylasechromosome CDS1281418 654 + 0.253823
FN0633 Replication proteinchromosome CDS1291068 1245 + 0.176707
FN0693 DNA mismatch repair protein mutSchromosome CDS1347536 2691 + 0.25864
FN0698 DNA integration/recombination/invertion proteinchromosome CDS1356751 417 + 0.270983
FN0705 DNA polymerase Ichromosome CDS1362209 2736 + 0.26133
FN0723 Hypothetical proteinchromosome CDS1381668 1857 + 0.239634
FN0743 ATP-dependent helicase, DinG familychromosome CDS1400990 2226 + 0.255166
FN0747 Phosphohydrolase (MUTT/NUDIX family protein)chromosome CDS1405829 516 - 0.251938
FN0760 unknownchromosome CDS1417948 813 - 0.216482
FN0773 Hypothetical proteinchromosome CDS1429414 282 + 0.237589
FN0786 Transposasechromosome CDS1442605 510 + 0.252941
FN0787 Transposasechromosome CDS1443345 624 + 0.283654
FN0805 Hypothetical proteinchromosome CDS1464922 756 - 0.227513
FN0818 DNA-binding protein HUchromosome CDS1476849 276 - 0.278986
FN0833 Hypothetical proteinchromosome CDS1494993 1620 + 0.223457
FN0837 Integrase/recombinasechromosome CDS1499265 987 + 0.247214
FN0840 Transposasechromosome CDS1501501 510 + 0.24902
FN0841 Transposasechromosome CDS1502241 624 + 0.274038
FN0850 Hypothetical cytosolic proteinchromosome CDS1509053 591 + 0.218274
FN0874 Phosphohydrolase (MUTT/NUDIX family protein)chromosome CDS1534462 516 - 0.275194
FN0895 unknownchromosome CDS1554999 465 - 0.217204
FN0898 Hypothetical proteinchromosome CDS1556716 1872 + 0.20406
FN0901 DNA polymerase, bacteriophage-typechromosome CDS1560112 588 + 0.263605
FN0909 DNA repair protein radCchromosome CDS1567046 699 - 0.234621
FN0917 Hypothetical proteinchromosome CDS1572735 969 + 0.205366
FN0931 Phosphohydrolase (MUTT/NUDIX family protein)chromosome CDS1584023 618 - 0.245955
FN0949 DNA helicasechromosome CDS1602572 4278 - 0.251987
FN1024 DNA-binding protein HUchromosome CDS1678262 309 - 0.307443
FN1066 Exodeoxyribonuclease VII large subunitchromosome CDS1711992 1215 + 0.260905
FN1068 Smf proteinchromosome CDS1713951 867 + 0.28143
FN1069 DNA topoisomerase Ichromosome CDS1714872 2271 + 0.255834
FN1071 Integrase/recombinasechromosome CDS1718572 873 + 0.214204
FN1090 Excinuclease ABC subunit Cchromosome CDS1734041 1770 + 0.253107
FN1103 Excinuclease ABC subunit Achromosome CDS1746699 2883 + 0.284773
FN1104 Holliday junction DNA helicase ruvAchromosome CDS1749593 585 + 0.22906
FN1108 Phosphohydrolase (MUTT/NUDIX family protein)chromosome CDS1752450 489 + 0.253579
FN1149 ATP-dependent nuclease subunit Achromosome CDS1799367 3171 - 0.210659
FN1150 unknownchromosome CDS1802530 2712 - 0.202802
FN1156 Primosomal protein N'chromosome CDS1811733 2301 + 0.236419
FN1160 SWF/SNF family helicasechromosome CDS1815976 3270 + 0.229664
FN1176 Hypothetical cytosolic proteinchromosome CDS1837596 321 - 0.246106
FN1177 Hypothetical proteinchromosome CDS1837879 1017 - 0.235988
FN1178 Hypothetical cytosolic proteinchromosome CDS1838883 495 - 0.240404
FN1181 unknownchromosome CDS1843060 903 - 0.272425
FN1183 Hypothetical cytosolic proteinchromosome CDS1845518 753 - 0.26162
FN1188 Hypothetical proteinchromosome CDS1850920 498 + 0.242972
FN1196 Hypothetical proteinchromosome CDS1856602 534 - 0.209738
FN1197 unknownchromosome CDS1857125 642 - 0.250779
FN1199 DNA polymerase IVchromosome CDS1859201 1053 + 0.237417
FN1217 Holliday junction DNA helicase ruvBchromosome CDS1876689 999 - 0.299299
FN1226 Uracil-DNA glycosylasechromosome CDS1884913 681 - 0.28047
FN1240 Lipopolysaccharide core biosynthesis protein rfaYchromosome CDS1897147 723 - 0.22545
FN1259 hypothetical proteinchromosome CDS1915223 594 + 0.277778
FN1304 Single-strand DNA binding proteinchromosome CDS1960389 465 - 0.313978
FN1319 DNA primasechromosome CDS1972476 1812 - 0.240066
FN1328 Exodeoxyribonuclease VII small subunitchromosome CDS1983007 213 - 0.234742
FN1329 Methyltransferasechromosome CDS1983432 549 - 0.269581
FN1339 Transposasechromosome CDS1991809 1482 + 0.254386
FN1343 seC-independent protein TATDchromosome CDS1996546 777 - 0.290862
FN1357 Transposasechromosome CDS2008329 1176 + 0.260204
FN1367 hypothetical proteinchromosome CDS2017628 606 - 0.234323
FN1370 Endonucleasechromosome CDS2019080 360 - 0.252778
FN1371 Ribonuclease HIIchromosome CDS2019445 648 - 0.28858
FN1383 DNA polymerase III alpha subunitchromosome CDS2034545 3402 - 0.264256
FN1386 SWF/SNF family helicasechromosome CDS2040278 2679 - 0.238895
FN1442 Transposasechromosome CDS2110245 624 - 0.283654
FN1443 Transposasechromosome CDS2111099 510 - 0.252941
FN1445 DNA helicasechromosome CDS2113464 2550 + 0.267059
FN1447 Transposasechromosome CDS2116779 624 + 0.270833
FN1479 Hypothetical proteinchromosome CDS2160793 567 - 0.222222
FN1492 DNA repair protein recOchromosome CDS2172859 702 - 0.226496
FN1511 Transposasechromosome CDS14357 1482 + 0.255061
FN1527 Hypothetical proteinchromosome CDS42273 390 - 0.282051
FN1530 Transposasechromosome CDS43765 357 + 0.277311
FN1575 Hypothetical cytosolic proteinchromosome CDS86283 303 - 0.234323
FN1576 ATPases and helicase subunits involved in DNA replicationchromosome CDS86595 870 - 0.222989
FN1581 DNA mismatch repair protein mutSchromosome CDS90985 2337 - 0.285409
FN1611 Competence proteinchromosome CDS120687 480 - 0.2375
FN1654 Hypothetical proteinchromosome CDS149253 1716 - 0.238928
FN1660 ATP-dependent DNA helicase recGchromosome CDS155929 2070 - 0.27971
FN1663 Hypothetical proteinchromosome CDS160454 1371 - 0.244347
FN1675 Transposasechromosome CDS172296 273 - 0.285714
FN1676 Transposasechromosome CDS172879 1176 + 0.253401
FN1677 Transposasechromosome CDS174159 156 - 0.269231
FN1680 Transposasechromosome CDS176061 285 - 0.266667
FN1717 NAD-dependent DNA ligasechromosome CDS213290 2091 + 0.281683
FN1719 Hypothetical proteinchromosome CDS218088 720 + 0.281944
FN1720 Hypothetical proteinchromosome CDS218861 729 - 0.201646
FN1815 Transposasechromosome CDS295716 336 - 0.267857
FN1827 Replicative DNA helicasechromosome CDS315989 1341 - 0.284116
FN1830 DNA polymerase III subunits gamma and tauchromosome CDS318661 1455 - 0.268041
FN1864 DNA mismatch repair protein mutSchromosome CDS354768 1464 - 0.239754
FN1883 Transposasechromosome CDS369003 1176 + 0.261054
FN1887 Transposasechromosome CDS371811 510 + 0.237255
FN1888 Transposasechromosome CDS372551 342 + 0.274854
FN1889 Transposasechromosome CDS372950 138 + 0.231884
FN1922 Hypothetical proteinchromosome CDS417723 1803 - 0.223516
FN1923 Adenine-specific methyltransferasechromosome CDS419697 1491 - 0.235412
FN1935 Adenine-specific methyltransferasechromosome CDS436150 1002 - 0.240519
FN1974 DNA/RNA helicase (DEAD/DEAH BOX family)chromosome CDS472788 2829 - 0.247084
FN1975 ATP-dependent RNA helicasechromosome CDS475739 1587 + 0.276623
FN2018 Single-stranded-DNA-specific exonuclease recJchromosome CDS520347 1671 - 0.274686
FN2074 BslIMchromosome CDS584336 2031 - 0.223535
FN2078 Transcriptional regulator, DeoR familychromosome CDS589514 843 - 0.231317
FN2125 DNA gyrase subunit Achromosome CDS633815 2436 - 0.291051
FN2126 DNA gyrase subunit Bchromosome CDS636396 1920 - 0.297917
FN2128 RECF proteinchromosome CDS638566 1110 - 0.224324