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2024-04-28 17:58:46

Gene list

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COG category: Replication, recombination and repair
Organism: Xanthomonas axonopodis pv. citri str. 306, 306

Number of genes found: 271

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Xanthomonas axonopodis pv. citri str. 306, 306
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA XACb0062 ISxac3 transposasepXAC64 CDS53278 387 - 0.630491
NA XACb0072 resolvasepXAC64 CDS64266 201 + 0.656716
NA XACa0029 transposasepXAC33 CDS19020 603 + 0.636816
NA XACb0050 ISxac2 transposasepXAC64 CDS44220 807 - 0.641883
NA XACb0008 Tn5044 transposasepXAC64 CDS5272 2991 - 0.630224
NA XACb0051 ISxac2 transposasepXAC64 CDS45020 267 - 0.614232
NA XACa0004 ISxac2 transposasepXAC33 CDS2131 267 + 0.614232
NA XACb0066 ISxac3 transposasepXAC64 CDS58778 168 - 0.571429
NA XACb0009 integrase-like proteinpXAC64 CDS8270 1275 - 0.677647
NA XACb0014 ISxac2 transposasepXAC64 CDS13761 267 - 0.614232
NA XACa0009 ISxac3 transposasepXAC33 CDS5329 213 - 0.535211
NA XACa0005 ISxac2 transposasepXAC33 CDS2391 828 + 0.647343
NA XACb0013 ISxac2 transposasepXAC64 CDS12940 828 - 0.647343
Ada DNA methylation and regulatory proteinchromosome CDS3306901 1464 + 0.718579
XAC0017 conserved hypothetical proteinchromosome CDS18131 1128 - 0.650709
XAC0035 conserved hypothetical proteinchromosome CDS44433 1089 + 0.650138
XAC0077 conserved hypothetical proteinchromosome CDS94574 978 - 0.670757
XAC0090 ISxac3 transposasechromosome CDS107220 273 + 0.622711
XAC0091 ISxac3 transposasechromosome CDS107546 807 + 0.625775
XAC0147 conserved hypothetical proteinchromosome CDS177709 1518 + 0.469697
XAC0152 ISxac3 transposasechromosome CDS184281 273 + 0.622711
XAC0153 ISxac3 transposasechromosome CDS184607 819 + 0.617827
XAC0342 ISxac3 transposasechromosome CDS408997 819 - 0.619048
XAC0343 ISxac3 transposasechromosome CDS409869 273 - 0.622711
XAC0540 ribonucleasechromosome CDS630068 1035 - 0.687923
XAC0578 ISxac3 transposasechromosome CDS681530 819 - 0.617827
XAC0579 ISxac3 transposasechromosome CDS682402 273 - 0.622711
XAC0606 endonucleasechromosome CDS711552 753 + 0.606906
XAC0676 conserved hypothetical proteinchromosome CDS801950 1065 + 0.683568
XAC0764 conserved hypothetical proteinchromosome CDS908859 369 - 0.691057
XAC0911 MutT-like proteinchromosome CDS1072507 660 - 0.669697
XAC1052 ISxac3 transposasechromosome CDS1210250 816 - 0.627451
XAC1053 ISxac3 transposasechromosome CDS1211110 273 - 0.622711
XAC1070 ISxac3 transposasechromosome CDS1227127 273 + 0.622711
XAC1071 ISxac3 transposasechromosome CDS1227453 819 + 0.619048
XAC1095 conserved hypothetical proteinchromosome CDS1248288 750 + 0.674667
XAC1102 ISxac3 transposasechromosome CDS1253838 273 + 0.622711
XAC1103 ISxac3 transposasechromosome CDS1254164 807 + 0.625775
XAC1107 integrasechromosome CDS1257978 1458 - 0.650892
XAC1157 conserved hypothetical proteinchromosome CDS1317346 465 + 0.643011
XAC1181 conserved hypothetical proteinchromosome CDS1346308 630 + 0.679365
XAC1197 conserved hypothetical proteinchromosome CDS1362978 609 + 0.704434
XAC1198 conserved hypothetical proteinchromosome CDS1363596 1419 + 0.700493
XAC1232 DNA-3-methyladenine glycosylasechromosome CDS1410326 648 + 0.675926
XAC1469 conserved hypothetical proteinchromosome CDS1694935 240 - 0.679167
XAC1504 ISxcd1 transposasechromosome CDS1736814 267 + 0.576779
XAC1505 ISxcd1 transposasechromosome CDS1737074 828 + 0.60628
XAC1586 MutT-nudix family proteinchromosome CDS1832398 636 + 0.676101
XAC1614 hypothetical proteinchromosome CDS1860674 690 + 0.594203
XAC1660 ISxac3 transposasechromosome CDS1912359 273 + 0.622711
XAC1661 ISxac3 transposasechromosome CDS1912685 819 + 0.619048
XAC1843 conserved hypothetical proteinchromosome CDS2139339 546 + 0.663004
XAC1848 conserved hypothetical proteinchromosome CDS2145329 387 - 0.653747
XAC1871 transposasechromosome CDS2171630 168 - 0.577381
XAC1872 transposasechromosome CDS2171679 687 - 0.598253
XAC1912 serine/threonine kinasechromosome CDS2237697 849 + 0.537102
XAC1920 ISxac3 transposasechromosome CDS2246692 807 - 0.625775
XAC1921 ISxac3 transposasechromosome CDS2247552 273 - 0.622711
XAC1924 transposasechromosome CDS2249955 309 - 0.618123
XAC2010 ATPasechromosome CDS2351671 1290 + 0.649612
XAC2083 conserved hypothetical proteinchromosome CDS2430130 1182 - 0.62775
XAC2099 ISxac2 transposasechromosome CDS2455929 828 - 0.647343
XAC2100 ISxac2 transposasechromosome CDS2456750 267 - 0.614232
XAC2101 ISxac3 transposasechromosome CDS2457085 543 - 0.627993
XAC2102 ISxac3 transposasechromosome CDS2457681 273 - 0.622711
XAC2103 DNA recombinasechromosome CDS2458014 594 - 0.577441
XAC2131 ISxac3 transposasechromosome CDS2488333 807 - 0.625775
XAC2132 ISxac3 transposasechromosome CDS2489193 273 - 0.622711
XAC2174 ISxac3 transposasechromosome CDS2547786 807 - 0.625775
XAC2175 ISxac3 transposasechromosome CDS2548646 273 - 0.622711
XAC2179 RadC family proteinchromosome CDS2550047 510 - 0.605882
XAC2213 cytosine-specific DNA methyltransferasechromosome CDS2598564 1464 + 0.702869
XAC2224 ISxac3 transposasechromosome CDS2608668 273 + 0.622711
XAC2225 ISxac3 transposasechromosome CDS2608994 807 + 0.625775
XAC2281 RadC family proteinchromosome CDS2668564 495 + 0.620202
XAC2371 IS1479 transposasechromosome CDS2764543 357 - 0.607843
XAC2372 IS1479 transposasechromosome CDS2764923 267 - 0.59176
XAC2423 IS1478 transposasechromosome CDS2825080 999 - 0.627628
XAC2424 ISxcd1 transposasechromosome CDS2826253 828 - 0.60628
XAC2426 ISxcd1 transposasechromosome CDS2827074 267 - 0.576779
XAC2430 Tn5044 transposasechromosome CDS2829046 1251 - 0.594724
XAC2432 transposasechromosome CDS2830683 906 + 0.64128
XAC2449 3-methyladenine DNA glycosylasechromosome CDS2850917 621 + 0.677939
XAC2508 transposasechromosome CDS2936959 141 - 0.609929
XAC2527 conserved hypothetical proteinchromosome CDS2959742 624 - 0.737179
XAC2558 excinuclease ABC subunit C homologchromosome CDS3017502 855 + 0.638596
XAC2564 conserved hypothetical proteinchromosome CDS3022778 630 + 0.669841
XAC2603 ISxac4 transposasechromosome CDS3070678 267 + 0.576779
XAC2604 ISxac4 transposasechromosome CDS3070968 822 + 0.60219
XAC2633 ISxac3 transposasechromosome CDS3096744 273 + 0.622711
XAC2634 ISxac3 transposasechromosome CDS3097070 807 + 0.625775
XAC2639 site-specific DNA-methyltransferasechromosome CDS3104373 702 - 0.655271
XAC2661 ISxac3 transposasechromosome CDS3119656 807 - 0.627014
XAC2662 ISxac3 transposasechromosome CDS3120516 273 - 0.622711
XAC2731 conserved hypothetical proteinchromosome CDS3193958 621 - 0.597423
XAC2749 methylated-DNA-protein-cysteine S-methyltransferase related proteinchromosome CDS3220724 408 - 0.691176
XAC2798 conserved hypothetical proteinchromosome CDS3279288 597 - 0.649916
XAC2889 ISxac2 transposasechromosome CDS3389504 828 - 0.647343
XAC2890 ISxac2 transposasechromosome CDS3390325 267 - 0.614232
XAC2901 conserved hypothetical proteinchromosome CDS3406101 453 - 0.549669
XAC2903 conserved hypothetical proteinchromosome CDS3408402 1581 - 0.574953
XAC2917 conserved hypothetical proteinchromosome CDS3425195 468 - 0.707265
XAC2956 replication related proteinchromosome CDS3461557 702 - 0.692308
XAC3012 conserved hypothetical proteinchromosome CDS3522485 255 + 0.65098
XAC3202 conserved hypothetical proteinchromosome CDS3769303 309 + 0.676375
XAC3221 ISxac3 transposasechromosome CDS3795904 273 + 0.622711
XAC3223 ISxac3 transposasechromosome CDS3796230 807 + 0.625775
XAC3226 Tn5044 transposasechromosome CDS3800396 3009 - 0.63011
XAC3247 ISxac3 transposasechromosome CDS3828916 273 + 0.622711
XAC3248 ISxac3 transposasechromosome CDS3829242 819 + 0.619048
XAC3269 RadC family proteinchromosome CDS3850707 564 - 0.641844
XAC3282 integrasechromosome CDS3863304 999 + 0.575576
XAC3283 ISxac2 transposasechromosome CDS3864367 267 + 0.614232
XAC3284 ISxac2 transposasechromosome CDS3864627 828 + 0.647343
XAC3285 hypothetical proteinchromosome CDS3865523 429 + 0.58042
XAC3298 integrasechromosome CDS3876083 1518 - 0.619236
XAC3320 ISxac3 transposasechromosome CDS3907004 807 - 0.625775
XAC3321 ISxac3 transposasechromosome CDS3907864 273 - 0.622711
XAC3432 conserved hypothetical proteinchromosome CDS4040520 660 - 0.686364
XAC3503 ISxac4 transposasechromosome CDS4141727 285 + 0.592982
XAC3504 ISxac4 transposasechromosome CDS4142035 825 + 0.603636
XAC3564 conserved hypothetical proteinchromosome CDS4228460 468 - 0.709402
XAC3663 conserved hypothetical proteinchromosome CDS4341658 522 - 0.653257
XAC3666 hypothetical proteinchromosome CDS4344471 663 + 0.565611
XAC3704 DNA polymerase related proteinchromosome CDS4379459 1437 - 0.652749
XAC3753 conserved hypothetical proteinchromosome CDS4426845 1359 + 0.657837
XAC3764 ISxac2 transposasechromosome CDS4441928 267 + 0.614232
XAC3765 ISxac2 transposasechromosome CDS4442188 828 + 0.647343
XAC3840 conserved hypothetical proteinchromosome CDS4519420 867 + 0.608997
XAC3841 conserved hypothetical proteinchromosome CDS4520450 489 + 0.652352
XAC3842 conserved hypothetical proteinchromosome CDS4520935 1041 + 0.60999
XAC3843 conserved hypothetical proteinchromosome CDS4521991 291 + 0.604811
XAC3927 conserved hypothetical proteinchromosome CDS4618988 555 + 0.643243
XAC3935 IS1389 transposasechromosome CDS4629977 237 + 0.662447
XAC3936 IS1389 transposasechromosome CDS4630220 663 + 0.627451
XAC3938 ISxac3 transposasechromosome CDS4632014 108 - 0.527778
XAC3939 ISxac2 transposasechromosome CDS4632230 126 + 0.579365
XAC3941 DNA helicasechromosome CDS4634759 1830 - 0.581967
XAC3942 conserved hypothetical proteinchromosome CDS4636552 1683 - 0.551396
XAC3943 ISxac2 transposasechromosome CDS4638259 828 - 0.647343
XAC3944 ISxac2 transposasechromosome CDS4639080 267 - 0.614232
XAC3945 recombination related proteinchromosome CDS4639395 186 - 0.580645
XAC4116 serine/threonine kinasechromosome CDS4829001 3708 - 0.702265
XAC4207 ISxac3 transposasechromosome CDS4956111 273 + 0.622711
XAC4208 ISxac3 transposasechromosome CDS4956437 807 + 0.625775
XAC4223 conserved hypothetical proteinchromosome CDS4982070 906 - 0.643488
XAC4322 ISxac3 transposasechromosome CDS5107647 273 + 0.622711
XAC4323 ISxac3 transposasechromosome CDS5107973 807 + 0.625775
alkB DNA repair system specific for alkylated DNAchromosome CDS4238187 612 - 0.656863
comEA DNA transport competence proteinchromosome CDS3456407 333 - 0.573574
dbpA ATP-dependent RNA helicasechromosome CDS2784754 1377 + 0.670298
dcm cytosine methyltransferasechromosome CDS681205 321 + 0.485981
deaD ATP-dependent RNA helicasechromosome CDS3299957 1899 - 0.678778
dinG ATP-dependent helicasechromosome CDS4721104 2136 - 0.658708
dinP DNA polymerase IVchromosome CDS4296418 1080 - 0.649074
dnaA chromosomal replication initiatorchromosome CDS42 1329 + 0.65237
dnaB replicative DNA helicasechromosome CDS1704558 1431 + 0.62963
dnaE1 DNA polymerase III alpha chainchromosome CDS1617941 3591 - 0.666667
dnaE2 DNA polymerase III alpha chainchromosome CDS1365250 3198 + 0.654159
dnaG DNA primasechromosome CDS4558729 1749 + 0.656947
dnaN DNA polymerase III beta chainchromosome CDS1647 1101 + 0.624886
dnaQ DNA polymerase III epsilon chainchromosome CDS1244349 735 + 0.647619
dnaX DNA polymerase III tau and gamma subunitschromosome CDS1259809 2070 + 0.674396
exo exodeoxyribonuclease IXchromosome CDS1073055 987 - 0.677812
exoA exodeoxyribonuclease IIIchromosome CDS4588578 801 - 0.651685
exoI succinoglycan biosynthesis proteinchromosome CDS3838087 738 - 0.623306
fis DNA-binding proteinchromosome CDS612956 273 - 0.619048
gyrA DNA gyrase subunit Achromosome CDS1878850 2700 + 0.631481
gyrB DNA gyrase subunit Bchromosome CDS5020 2445 + 0.649489
helD helicase IVchromosome CDS2648746 2820 + 0.630142
himA integration host factor alpha subunitchromosome CDS3048383 300 - 0.586667
holA DNA polymerase III delta subunitchromosome CDS3257675 1029 - 0.690962
holB DNA polymerase III delta' subunitchromosome CDS1282627 960 + 0.679167
holC DNA polymerase III holoenzyme chi subunitchromosome CDS4216987 426 + 0.671362
hrpA ATP-dependent RNA helicasechromosome CDS3671821 4056 - 0.66642
hrpB ATP-dependent RNA helicasechromosome CDS348799 2502 - 0.704636
hup histone-like proteinchromosome CDS3434539 426 + 0.63615
hupB histone-like proteinchromosome CDS1237731 273 + 0.571429
ihfB integration host factor beta subunitchromosome CDS2687491 312 - 0.596154
int integrase/recombinasechromosome CDS3409969 1320 - 0.590151
int phage-related integrasechromosome CDS410422 417 + 0.630695
int phage-related integrasechromosome CDS1744033 1533 - 0.523157
int integrasechromosome CDS1730204 1335 - 0.477154
int phage-related integrasechromosome CDS2606638 1200 + 0.635
int phage-related integrasechromosome CDS3093992 1242 - 0.635266
intA phage-related integrasechromosome CDS1918024 1191 - 0.577666
intS phage-related integrasechromosome CDS2553541 1260 - 0.646825
intS phage-related integrasechromosome CDS2673934 1227 - 0.593317
lig1 DNA ligasechromosome CDS1873130 2502 + 0.665068
lig2 DNA ligasechromosome CDS1547457 1605 - 0.666044
lig3 ATP-dependent DNA ligasechromosome CDS2814778 2619 - 0.654066
mdcD delta subunit of malonate decarboxylasechromosome CDS663217 318 + 0.660377
mfd transcription-repair coupling factorchromosome CDS3350752 3465 + 0.658874
mttC type V secretory pathway proteinchromosome CDS374409 813 + 0.656827
mutL DNA mismatch repair protein MutLchromosome CDS2800969 1878 - 0.665069
mutM formamidopyrimidine DNA glycosylasechromosome CDS5064634 816 - 0.609069
mutS DNA mismatch repair proteinchromosome CDS1491904 2709 - 0.651532
mutT 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS2334412 459 - 0.64488
mutT 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS2389150 489 + 0.646217
mutY A/G-specific adenine glycosylasechromosome CDS3012447 1074 + 0.66108
nfi endonuclease Vchromosome CDS3374560 714 + 0.691877
nth endonuclease IIIchromosome CDS1829361 666 - 0.617117
nudC NADH pyrophosphatasechromosome CDS590657 891 + 0.687991
nudE ADP compounds hydrolasechromosome CDS3588078 558 - 0.637993
nudH probable (di)nucleoside polyphosphate hydrolasechromosome CDS578005 618 + 0.652104
ogt 6-O-methylguanine-DNA methyltransferasechromosome CDS3308361 546 + 0.675824
orf8 plasmid-related proteinchromosome CDS2624846 2301 + 0.661452
orfS cointegrate resolution protein Schromosome CDS3804466 204 - 0.676471
orfS cointegrate resolution protein Schromosome CDS3803395 1020 - 0.670588
parA resolvasechromosome CDS2832254 909 + 0.654565
parC topoisomerase IV subunit Achromosome CDS1662690 2244 - 0.649733
parE topoisomerase IV subunit Bchromosome CDS1974844 1890 - 0.630688
phaE PHA synthase subunitchromosome CDS2391564 1224 + 0.674837
phr photolyasechromosome CDS1706058 1455 + 0.646048
pin XACb0061 invertase recombinase-like proteinpXAC64 CDS52476 573 + 0.640489
pin XACa0006 invertase/recombinase like proteinpXAC33 CDS3184 630 - 0.644444
pknB serine/threonine kinasechromosome CDS4846892 2298 - 0.692776
polA DNA polymerase Ichromosome CDS4815123 2805 - 0.67344
priA primosomal protein N'chromosome CDS4491394 2223 + 0.719748
radC DNA repair proteinchromosome CDS4600881 678 + 0.70944
rci shufflon-specific recombinasechromosome CDS2818642 948 + 0.589662
recA RecA proteinchromosome CDS1999890 1035 + 0.617391
recB exodeoxyribonuclease V beta chainchromosome CDS5126166 3732 - 0.685959
recC exodeoxyribonuclease V gamma chainchromosome CDS5129894 3405 - 0.696916
recD exodeoxyribonuclease V alpha chainchromosome CDS5123886 2058 - 0.705053
recF DNA replication and repair RecF proteinchromosome CDS3799 1107 + 0.65402
recG ATP-dependent DNA helicasechromosome CDS3997178 2154 - 0.670381
recJ single-stranded-DNA-specific exonucleasechromosome CDS2162288 1737 + 0.670121
recN recombination protein Nchromosome CDS1751643 1665 - 0.6997
recO DNA repair proteinchromosome CDS1532354 723 + 0.68603
recQ DNA helicasechromosome CDS3677076 1797 + 0.660545
recR recombination protein RecRchromosome CDS1262303 594 + 0.671717
rep ATP-dependent DNA helicasechromosome CDS5056650 1977 - 0.635812
rhlB ATP-dependent RNA helicasechromosome CDS4502369 1716 - 0.680653
rhlE ATP-dependent RNA helicasechromosome CDS4282079 1383 + 0.680405
rhlE ATP-dependent RNA helicasechromosome CDS527052 1293 - 0.688322
rnhA ribonuclease Hchromosome CDS1243888 453 + 0.629139
rnhB ribonuclease HIIchromosome CDS1621794 735 - 0.677551
rnt ribonuclease Tchromosome CDS1817163 642 - 0.640187
ruvA holliday junction binding protein DNA helicasechromosome CDS3700184 585 - 0.673504
ruvB holliday junction binding protein DNA helicasechromosome CDS3696770 1041 - 0.659942
ruvC holliday junction resolvasechromosome CDS3700887 525 - 0.653333
sbcB exodeoxyribonuclease Ichromosome CDS1845619 1446 - 0.653527
smf DNA processing chain Achromosome CDS4473861 1146 + 0.697208
ssb single-stranded DNA binding proteinchromosome CDS3411432 543 - 0.662983
ssb single-stranded DNA binding proteinchromosome CDS2595501 387 + 0.666667
tag DNA-3-methyladenine glycosylase Ichromosome CDS3426510 573 + 0.638743
tnp transposasechromosome CDS2830363 159 + 0.591195
tnpA XACb0067 Tn5045 transposasepXAC64 CDS59363 2550 - 0.638039
tnpA XACa0034 Tn5045 transposasepXAC33 CDS22405 2448 - 0.640931
tnpA XACb0068 Tn5045 transposasepXAC64 CDS61925 516 - 0.637597
tnpA XACa0035 Tn5045 transposasepXAC33 CDS24865 516 - 0.637597
tnpR XACb0071 Tn5045 resolvasepXAC64 CDS63317 924 + 0.625541
tnpR XACa0038 Tn5045 resolvasepXAC33 CDS26257 924 + 0.625541
topA DNA topoisomerase Ichromosome CDS4477778 2493 + 0.647413
topB DNA topoisomerase IIIchromosome CDS2596003 2037 + 0.685812
trwC XACb0031 TrwC proteinpXAC64 CDS28364 2976 + 0.643817
ung uracil-DNA glycosylasechromosome CDS4499087 726 - 0.670799
uvrA1 excinuclease ABC subunit Achromosome CDS1422240 2964 - 0.642375
uvrA2 excinuclease ABC subunit Achromosome CDS1351250 2529 + 0.668248
uvrB excinuclease ABC subunit Bchromosome CDS3091075 2022 - 0.604847
uvrC excinuclease ABC subunit Cchromosome CDS2440833 1860 + 0.647312
uvrD DNA helicase IIchromosome CDS4878411 2193 - 0.650707
xamIM XamI DNA methyltransferasechromosome CDS2835696 1587 + 0.654694
xerC site-specific recombinasechromosome CDS750735 918 + 0.647059
xerD integrase-recombinase XerDchromosome CDS4210642 918 - 0.675381
xseA exodeoxyribonuclease VII large subunitchromosome CDS2807986 1338 + 0.679372
xseB exodeoxyribonuclease VII small subunitchromosome CDS3234369 261 + 0.636015
xthA1 exodeoxyribonuclease IIIchromosome CDS4904393 780 - 0.647436
xthA2 exodeoxyribonuclease IIIchromosome CDS2375121 993 + 0.625378
yoaA ATP-dependent helicasechromosome CDS3649621 2025 - 0.680988