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2024-05-01 07:09:49

Gene list

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COG category: Replication, recombination and repair
Organism: Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913

Number of genes found: 258

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Xanthomonas campestris pv. campestris str. ATCC 33913, ATCC 33913
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
Ada DNA methylation and regulatory protein Ada orchromosome CDS3141308 1464 + 0.704235
XCC0015 conserved hypothetical proteinchromosome CDS16981 1095 + 0.686758
XCC0034 conserved hypothetical proteinchromosome CDS44888 1185 + 0.667511
XCC0053 conserved hypothetical proteinchromosome CDS67289 966 - 0.695652
XCC0065 conserved hypothetical proteinchromosome CDS79830 840 - 0.569048
XCC0105 ATP-dependent DNA ligasechromosome CDS126997 3006 + 0.675316
XCC0127 IS1479 transposasechromosome CDS162619 981 - 0.619776
XCC0136 IS1480 transposasechromosome CDS182656 519 - 0.56262
XCC0214 methyltransferasechromosome CDS269602 1632 + 0.531863
XCC0215 conserved hypothetical proteinchromosome CDS271235 2502 + 0.61311
XCC0344 site-specific recombinasechromosome CDS413236 984 + 0.670732
XCC0399 IS1404 transposasechromosome CDS476652 264 + 0.590909
XCC0400 IS1404 transposasechromosome CDS476729 1026 + 0.617934
XCC0426 IS1479 transposasechromosome CDS520745 213 + 0.633803
XCC0521 ribonucleasechromosome CDS628073 1035 - 0.694686
XCC0524 helicasechromosome CDS632372 2904 + 0.576446
XCC0533 ISxcd1 transposasechromosome CDS650057 267 + 0.629214
XCC0534 ISxcd1 transposasechromosome CDS650356 336 + 0.675595
XCC0535 IS1478 transposasechromosome CDS650702 1425 - 0.633684
XCC0540 conserved hypothetical proteinchromosome CDS655007 525 + 0.681905
XCC0560 IS1404 transposasechromosome CDS676185 987 - 0.616008
XCC0561 IS1404 transposasechromosome CDS677024 264 - 0.587121
XCC0570 IS1478 transposasechromosome CDS687637 1425 + 0.633684
XCC0609 IS1479 transposasechromosome CDS733552 177 - 0.610169
XCC0610 ISxcC1 transposasechromosome CDS733928 768 - 0.601562
XCC0611 ISxcc1 transposasechromosome CDS734770 267 - 0.580524
XCC0612 ISxcd1 transposasechromosome CDS735327 123 - 0.593496
XCC0638 IS1478 transposasechromosome CDS762266 1368 - 0.638889
XCC0710 conserved hypothetical proteinchromosome CDS854780 369 - 0.701897
XCC0838 MutT-like proteinchromosome CDS995960 660 - 0.663636
XCC0993 conserved hypothetical proteinchromosome CDS1145940 750 + 0.696
XCC1040 conserved hypothetical proteinchromosome CDS1195408 468 - 0.645299
XCC1067 type III restriction-modification enzyme, helicase subunitchromosome CDS1227462 3123 + 0.582133
XCC1068 possible DNA methylasechromosome CDS1230586 2919 + 0.565605
XCC1069 putative DNA helicasechromosome CDS1233504 2079 + 0.567581
XCC1083 conserved hypothetical proteinchromosome CDS1250960 636 + 0.707547
XCC1099 conserved hypothetical proteinchromosome CDS1276149 603 + 0.716418
XCC1100 conserved hypothetical proteinchromosome CDS1276761 1419 + 0.699084
XCC1131 DNA-3-methyladenine glycosylasechromosome CDS1320013 642 + 0.679128
XCC1177 IS1480 transposasechromosome CDS1373511 255 + 0.552941
XCC1209 IS1478 transposasechromosome CDS1414467 1425 + 0.633684
XCC1245 conserved hypothetical proteinchromosome CDS1450226 429 - 0.624709
XCC1248 IS1479 transposasechromosome CDS1454806 981 + 0.618756
XCC1426 conserved hypothetical proteinchromosome CDS1658684 768 - 0.677083
XCC1453 helicasechromosome CDS1692939 3198 + 0.559725
XCC1454 IS1478 transposasechromosome CDS1696520 1425 + 0.633684
XCC1455 IS1477 transposasechromosome CDS1698035 1014 - 0.640039
XCC1456 IS1477 transposasechromosome CDS1698901 267 - 0.629214
XCC1545 conserved hypothetical proteinchromosome CDS1805209 2271 + 0.677675
XCC1597 phage-related integrasechromosome CDS1865348 1467 + 0.603272
XCC1605 hypothetical proteinchromosome CDS1874953 1125 + 0.569778
XCC1606 ISxcc1 transposasechromosome CDS1876374 267 + 0.573034
XCC1607 ISxcC1 transposasechromosome CDS1876715 768 + 0.582031
XCC1609 IS1479 transposasechromosome CDS1878689 981 - 0.619776
XCC1613 phage-related integrasechromosome CDS1882328 1449 - 0.592133
XCC1619 RadC family proteinchromosome CDS1887703 480 + 0.6375
XCC1627 IS1477 transposasechromosome CDS1897763 267 + 0.629214
XCC1628 IS1477 transposasechromosome CDS1897843 1053 + 0.641026
XCC1630 invertase/recombinase proteinchromosome CDS1900689 567 - 0.661376
XCC1633 ISxac3 transposasechromosome CDS1902368 828 - 0.609903
XCC1634 ISxac3 transposasechromosome CDS1903240 279 - 0.616487
XCC1636 IS1480 transposasechromosome CDS1906915 519 - 0.566474
XCC1638 IS1478 transposasechromosome CDS1910557 1425 + 0.633684
XCC1795 IS1477 transposasechromosome CDS2093052 1053 - 0.626781
XCC1796 IS1477 transposasechromosome CDS2093918 267 - 0.588015
XCC1823 conserved hypothetical proteinchromosome CDS2125892 552 + 0.693841
XCC1976 ATPasechromosome CDS2319852 1287 + 0.648019
XCC2018 hypothetical proteinchromosome CDS2367673 309 + 0.644013
XCC2049 conserved hypothetical proteinchromosome CDS2419070 519 - 0.574181
XCC2095 DNA helicase related proteinchromosome CDS2469862 6675 + 0.644345
XCC2097 Tn5041 transposasechromosome CDS2478711 897 + 0.567447
XCC2098 ISxcd1 transposasechromosome CDS2478371 381 - 0.606299
XCC2103 YeeB-like proteinchromosome CDS2485030 2100 - 0.56
XCC2105 IS1478 transposasechromosome CDS2488088 1368 - 0.638889
XCC2107 IS1595 transposasechromosome CDS2490063 963 + 0.61163
XCC2316 3-methyladenine DNA glycosylasechromosome CDS2721967 624 + 0.652244
XCC2392 conserved hypothetical proteinchromosome CDS2828282 624 - 0.733974
XCC2427 excinuclease ABC subunit C homologchromosome CDS2887144 858 + 0.645688
XCC2433 conserved hypothetical proteinchromosome CDS2892736 630 + 0.68254
XCC2470 IS1479 transposasechromosome CDS2939079 981 - 0.620795
XCC2472 ISD1 transposasechromosome CDS2942234 456 + 0.559211
XCC2473 ISD1 transposasechromosome CDS2943068 144 + 0.541667
XCC2490 IS1478 transposasechromosome CDS2959979 1368 - 0.638889
XCC2559 conserved hypothetical proteinchromosome CDS3035597 600 - 0.603333
XCC2578 methylated-DNA-protein-cysteine S-methyltransferase related proteinchromosome CDS3062447 399 - 0.694236
XCC2707 ISxac3 transposasechromosome CDS3210982 294 + 0.612245
XCC2708 ISxac3 transposasechromosome CDS3211293 855 + 0.608187
XCC2709 IS1479 transposasechromosome CDS3212210 981 + 0.621814
XCC2747 conserved hypothetical proteinchromosome CDS3258365 468 - 0.717949
XCC2751 hypothetical proteinchromosome CDS3261859 1275 + 0.662745
XCC2786 replication related proteinchromosome CDS3295305 702 - 0.696581
XCC2816 IS1480 transposasechromosome CDS3324586 519 + 0.572254
XCC2843 conserved hypothetical proteinchromosome CDS3355331 252 + 0.670635
XCC2897 ISxac3 transposasechromosome CDS3436461 828 - 0.607488
XCC2898 ISxac3 transposasechromosome CDS3437333 294 - 0.612245
XCC2967 site-specific DNA-methyltransferasechromosome CDS3528129 705 - 0.635461
XCC3007 conserved hypothetical proteinchromosome CDS3557792 276 + 0.630435
XCC3072 conserved hypothetical proteinchromosome CDS3637565 309 + 0.682848
XCC3113 ISxac3 transposasechromosome CDS3687906 279 + 0.616487
XCC3114 degenerated ISxac3 transposasechromosome CDS3688238 819 + 0.610501
XCC3122 IS1478 transposasechromosome CDS3698992 1368 - 0.638889
XCC3123 ISxcc1 transposasechromosome CDS3700520 267 + 0.580524
XCC3124 ISxcc1 transposasechromosome CDS3700861 768 + 0.582031
XCC3125 IS1477 transposasechromosome CDS3701615 786 - 0.657761
XCC3133 DNA helicase related proteinchromosome CDS3710567 3264 + 0.554228
XCC3134 truncated IS1477 transposasechromosome CDS3714155 267 + 0.629214
XCC3135 ISxcc1 transposasechromosome CDS3714646 768 - 0.582031
XCC3136 ISxcc1 transposasechromosome CDS3715488 267 - 0.580524
XCC3137 truncated IS1477 transposasechromosome CDS3715776 411 + 0.618005
XCC3138 IS1404 transposasechromosome CDS3716225 270 + 0.581481
XCC3139 IS1404 transposasechromosome CDS3716308 1026 + 0.612086
XCC3140 truncated IS1477 transposasechromosome CDS3717460 237 + 0.582278
XCC3158 aminopeptidasechromosome CDS3738587 279 + 0.666667
XCC3196 IS1480 transposasechromosome CDS3797334 519 - 0.564547
XCC3199 IS1480 transposasechromosome CDS3800287 519 + 0.566474
XCC3214 IS1478 transposasechromosome CDS3816446 1635 - 0.619572
XCC3217 IS1404 transposasechromosome CDS3820555 264 + 0.583333
XCC3218 IS1404 transposasechromosome CDS3820632 1026 + 0.612086
XCC3303 IS1479 transposasechromosome CDS3921716 981 + 0.619776
XCC3306 IS1477 transposasechromosome CDS3924103 267 + 0.629214
XCC3307 IS1477 transposasechromosome CDS3924183 1053 + 0.642925
XCC3343 IS1478 transposasechromosome CDS3977630 1368 - 0.638889
XCC3443 conserved hypothetical proteinchromosome CDS4097775 1065 - 0.709859
XCC3463 IS1404 transposasechromosome CDS4124553 987 - 0.612969
XCC3464 IS1404 transposasechromosome CDS4125392 264 - 0.587121
XCC3473 IS1480 transposasechromosome CDS4137739 519 + 0.564547
XCC3480 ISxac3 transposasechromosome CDS4145886 828 - 0.608696
XCC3481 ISxac3 transposasechromosome CDS4146758 279 - 0.616487
XCC3495 ISxac3 transposasechromosome CDS4162579 294 + 0.615646
XCC3496 ISxac3 transposasechromosome CDS4162890 855 + 0.607018
XCC3527 endonucleasechromosome CDS4208940 753 - 0.625498
XCC3572 ISxcc1 transposasechromosome CDS4259721 267 + 0.573034
XCC3573 ISxcc1 transposasechromosome CDS4260248 582 + 0.580756
XCC3575 IS1404 transposasechromosome CDS4262587 264 + 0.583333
XCC3576 IS1404 transposasechromosome CDS4262664 1026 + 0.61306
XCC3579 truncated ISxac3 transposasechromosome CDS4266279 288 - 0.625
XCC3580 IS1477 transposasechromosome CDS4266575 1053 - 0.641975
XCC3581 IS1477 transposasechromosome CDS4267441 267 - 0.629214
XCC3582 ISxac3 transposasechromosome CDS4267754 582 - 0.608247
XCC3583 ISxac3 transposasechromosome CDS4268380 279 - 0.620072
XCC3585 IS1479 transposasechromosome CDS4270226 981 + 0.619776
XCC3586 IS1478 transposasechromosome CDS4271466 1368 - 0.638889
XCC3602 conserved hypothetical proteinchromosome CDS4297568 504 - 0.686508
XCC3626 RNA-directed DNA polymerasechromosome CDS4324395 1695 + 0.473746
XCC3627 IS1478 transposasechromosome CDS4326363 1368 + 0.638889
XCC3664 DNA polymerase related proteinchromosome CDS4363529 1278 - 0.675274
XCC3732 ISxac3 transposasechromosome CDS4439870 294 + 0.615646
XCC3733 ISxac3 transposasechromosome CDS4440181 855 + 0.609357
XCC3776 ATP-dependent RNA helicasechromosome CDS4487426 1722 - 0.692799
XCC3871 conserved hypothetical proteinchromosome CDS4599981 540 + 0.692593
XCC3881 DNA polymerase-related proteinchromosome CDS4610138 660 + 0.689394
XCC4098 conserved hypothetical proteinchromosome CDS4870562 909 - 0.633663
XCC4140 ISxac3 transposasechromosome CDS4934944 273 + 0.619048
XCC4141 ISxac3 transposasechromosome CDS4935234 855 + 0.609357
XCC4184 IS1479 transposasechromosome CDS4991536 327 - 0.617737
XCC4185 IS1479 transposasechromosome CDS4991985 261 + 0.59387
XCC4192 IS1478 transposasechromosome CDS5001345 1368 - 0.638889
alkB DNA repair system specific for alkylated DNAchromosome CDS755394 606 + 0.650165
comEA DNA transport competence proteinchromosome CDS3291027 333 - 0.567568
dbpA ATP-dependent RNA helicasechromosome CDS2683748 1377 + 0.672476
deaD ATP-dependent RNA helicasechromosome CDS3133068 1929 - 0.687403
dinG ATP-dependent helicasechromosome CDS4678394 2136 - 0.674157
dinP DNA polymerase IVchromosome CDS705301 1080 + 0.652778
dnaA chromosomal replication initiatorchromosome CDS42 1329 + 0.659142
dnaB replicative DNA helicasechromosome CDS1668203 1431 + 0.626136
dnaE1 DNA polymerase III alpha chainchromosome CDS1579471 3591 - 0.662768
dnaE2 DNA polymerase III alpha chainchromosome CDS1278532 3195 + 0.671987
dnaG DNA primasechromosome CDS4539244 1749 + 0.656947
dnaN DNA polymerase III beta chainchromosome CDS1646 1101 + 0.645777
dnaQ DNA polymerase III epsilon chainchromosome CDS1142346 738 + 0.650406
dnaX DNA polymerase III tau and gamma subunitschromosome CDS1150694 1962 + 0.683486
exo exodeoxyribonuclease IXchromosome CDS996508 999 - 0.686687
exoA exodeoxyribonuclease IIIchromosome CDS4569842 801 - 0.646692
exoI succinoglycan biosynthesis proteinchromosome CDS2401312 696 + 0.652299
fis DNA-binding proteinchromosome CDS614868 273 - 0.626374
gyrA DNA gyrase subunit Achromosome CDS1837968 2700 + 0.635556
gyrB DNA gyrase subunit Bchromosome CDS4853 2445 + 0.649898
himA integration host factor alpha chainchromosome CDS2918445 300 - 0.6
holA DNA polymerase III delta subunitchromosome CDS3104059 1029 - 0.691934
holB DNA polymerase III delta' subunitchromosome CDS1172706 960 + 0.695833
holC DNA polymerase III holoenzyme chi subunitchromosome CDS776594 426 - 0.673709
hrpA ATP dependent RNA helicasechromosome CDS3502471 4116 - 0.679786
hrpB ATP-dependent RNA helicasechromosome CDS337514 2511 - 0.719634
hup histone-like proteinchromosome CDS3269930 423 + 0.647754
hupB histone-like proteinchromosome CDS1135015 273 + 0.578755
ihfB integration host factor beta subunitchromosome CDS2586134 312 - 0.605769
int phage-related integrasechromosome CDS1881307 996 - 0.565261
int phage-related integrasechromosome CDS1916589 549 - 0.615665
int phage-related integrasechromosome CDS3558999 1200 + 0.5875
int integrasechromosome CDS4994514 225 + 0.515556
int phage-related integrasechromosome CDS465420 447 + 0.597315
intS phage-related integrasechromosome CDS3726461 1890 - 0.577778
intS phage-related integrasechromosome CDS2494702 1938 - 0.608875
lig1 DNA ligasechromosome CDS1832376 2502 + 0.667466
lig2 DNA ligasechromosome CDS1507897 1605 - 0.677259
lig3 ATP-dependent DNA ligasechromosome CDS2712701 2550 - 0.661176
mfd transcription-repair coupling factorchromosome CDS3196467 3468 + 0.664648
mttC type V secretory pathway proteinchromosome CDS367077 807 + 0.66171
mutL DNA mismatch repair proteinchromosome CDS2699842 1875 - 0.6864
mutM formamidopyrimidine DNA glycosylasechromosome CDS4944183 816 - 0.628676
mutS DNA mismatch repair proteinchromosome CDS1410066 2676 - 0.661435
mutT 7, 8-dihydro-8-oxoguanine-triphosphatasechromosome CDS2302636 459 - 0.675381
mutT 7, 8-dihydro-8-oxoguanine-triphosphatasechromosome CDS2551171 489 - 0.650307
mutY A/G-specific adenine glycosylasechromosome CDS2877069 1071 + 0.6676
nfi endonuclease Vchromosome CDS3217012 711 + 0.696203
nth endonuclease IIIchromosome CDS1794385 684 - 0.638889
nudC NADH pyrophosphatasechromosome CDS587541 900 + 0.681111
nudE ADP compounds hydrolasechromosome CDS3409438 558 - 0.668459
nudH (di)nucleoside polyphosphate hydrolasechromosome CDS578847 618 + 0.63754
ogt 6-O-methylguanine-DNA methyltransferasechromosome CDS3142768 543 + 0.694291
orf35 phage-related integrasechromosome CDS1702007 1017 + 0.577188
orf37 phage-related proteinchromosome CDS3553413 2664 + 0.620495
parC topoisomerase IV subunit Achromosome CDS1624771 2244 - 0.653743
parE topoisomerase IV subunit Bchromosome CDS1971931 1905 - 0.647244
phr photolyase-like proteinchromosome CDS1669888 1455 + 0.670103
polA DNA polymerase Ichromosome CDS4765994 2784 - 0.687859
priA primosomal protein N'chromosome CDS4475965 2223 + 0.721997
radC DNA repair proteinchromosome CDS4582388 678 + 0.716814
recA RecA proteinchromosome CDS2000077 1032 + 0.636628
recB exodeoxyribonuclease V beta chainchromosome CDS5009047 4119 - 0.714251
recC exodeoxyribonuclease V gamma chainchromosome CDS5013162 3405 - 0.712775
recD exodeoxyribonuclease V alpha chainchromosome CDS5006813 2238 - 0.714477
recF DNA replication and repair RecF proteinchromosome CDS3633 1107 + 0.654923
recG ATP-dependent DNA helicasechromosome CDS3846693 2142 - 0.693744
recJ putative single stranded DNA exonucleasechromosome CDS2148633 1740 + 0.686207
recN recombination protein Nchromosome CDS1717194 1665 - 0.702102
recO DNA repair proteinchromosome CDS1492246 726 + 0.690083
recQ DNA helicasechromosome CDS3507580 1803 + 0.674986
recR recombination protein RecRchromosome CDS1153079 594 + 0.671717
rep ATP-dependent DNA helicasechromosome CDS4932357 1977 - 0.647446
rhlE ATP-dependent RNA helicasechromosome CDS517880 1293 - 0.694509
rhlE ATP-dependent RNA helicasechromosome CDS710483 1389 - 0.688985
rnhA ribonuclease Hchromosome CDS1141885 453 + 0.657837
rnhB ribonuclease HIIchromosome CDS1583298 723 - 0.692946
rnt ribonuclease Tchromosome CDS1782465 651 - 0.658986
ruvA holliday junction binding protein, DNA helicasechromosome CDS3572231 585 - 0.690598
ruvB holliday junction binding protein, DNA helicasechromosome CDS3567920 1041 - 0.673391
ruvC holliday junction resolvase, endodeoxyribonucleasechromosome CDS3572928 525 - 0.674286
sbcB exodeoxyribonuclease Ichromosome CDS1811778 1446 - 0.661134
smf DNA processing chain Achromosome CDS4459157 1137 + 0.703606
ssb single-stranded DNA binding proteinchromosome CDS3244604 519 - 0.660886
tag DNA-3-methyladenine glycosylase Ichromosome CDS3261323 540 + 0.627778
topA DNA topoisomerase Ichromosome CDS4462944 2496 + 0.635817
umuC polymerase V subunitchromosome CDS3524399 1287 + 0.655012
ung uracil-DNA glycosylasechromosome CDS4484144 726 - 0.668044
uvrA1 excinuclease ABC subunit Achromosome CDS1334657 2967 - 0.640377
uvrA2 excinuclease ABC subunit Achromosome CDS1255669 2586 + 0.67208
uvrB excinuclease ABC subunit Bchromosome CDS2954983 2022 - 0.628091
uvrC excinuclease ABC subunit Cchromosome CDS2497905 1857 - 0.662897
uvrD DNA helicase IIchromosome CDS4772627 2187 - 0.659808
wxcB kinasechromosome CDS724009 2295 + 0.571678
xerC site-specific recombinasechromosome CDS4164143 969 - 0.664603
xerD integrase/recombinasechromosome CDS782003 972 + 0.703704
xseA exodeoxyribonuclease VII large subunitchromosome CDS2706806 1341 + 0.697987
xseB exodeoxyribonuclease VII small subunitchromosome CDS3083988 264 + 0.636364
xthA1 exodeoxyribonuclease IIIchromosome CDS4798378 780 - 0.669231
xthA2 exodeoxyribonuclease IIIchromosome CDS2345666 1071 + 0.640523
yoaA ATP-dependent helicasechromosome CDS3480746 2007 - 0.67713