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2024-04-30 08:21:33

Gene list

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COG category: Replication, recombination and repair
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 183

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
STM0037 putative cytoplasmic proteinchromosome CDS42932 1254 + 0.499203
STM0297 putative transposasechromosome CDS340755 198 + 0.525253
STM0298 putative integrase core domainchromosome CDS341178 282 + 0.446809
STM0325 putative IS3 transposasechromosome CDS369197 801 - 0.54432
STM0556 putative transposasechromosome CDS614199 219 - 0.474886
STM0716 putative phage integrasechromosome CDS781628 567 + 0.506173
STM0893 putative Fels-1 prophage integrasechromosome CDS962612 1326 - 0.473605
STM0900 putative Fels-1 prophage DNA or RNA helicases of superfamily IIchromosome CDS969999 1584 + 0.52904
STM0947 putative integrase proteinchromosome CDS1026087 684 - 0.504386
STM0948 putative cytoplasmic proteinchromosome CDS1026941 402 - 0.502488
STM1005 Gifsy-2 prophage integrasechromosome CDS1098228 1293 - 0.488012
STM1015 Gifsy-2 prophage ATPase involved in DNA replication initiationchromosome CDS1107230 750 + 0.525333
STM1301 putative mutator MutT proteinchromosome CDS1380453 417 - 0.573142
STM1309 putative nuclease subunit of the excinuclease complexchromosome CDS1389117 909 - 0.548955
STM1860 putative transposasechromosome CDS1956854 858 - 0.526807
STM1871 putative phage integrase proteinchromosome CDS1967026 897 + 0.477146
STM1873 putative periplasmic or exported proteinchromosome CDS1968296 354 - 0.533898
STM2346 putative NTP pyrophosphohydrolasechromosome CDS2458408 555 - 0.544144
STM2509 putative IS3-like transposasechromosome CDS2622292 357 - 0.473389
STM2599 Gifsy-1 prophage proteinchromosome CDS2748177 1251 + 0.53717
STM2609 Gifsy-1 prophage proteinchromosome CDS2757539 495 - 0.521212
STM2625 Gifsy-1 prophage proteinchromosome CDS2767108 750 - 0.525333
STM2636 Gifsy-1 prophage proteinchromosome CDS2775587 1230 - 0.502439
STM2697 Fels-2 prophage proteinchromosome CDS2846293 2808 - 0.578348
STM2702 Fels-2 prophage proteinchromosome CDS2851384 558 - 0.503584
STM2730 Fels-2 prophage proteinchromosome CDS2872688 858 - 0.461538
STM2739 Fels-2 prophage proteinchromosome CDS2876815 1026 + 0.497076
STM2740 Fels-2 prophage proteinchromosome CDS2878169 1065 + 0.565258
STM2745 putative inner membrane proteinchromosome CDS2883501 2070 + 0.632367
STM2760 putative integrasechromosome CDS2900439 876 + 0.574201
STM2763 putative integrasechromosome CDS2905475 597 + 0.452261
STM2764 putative integrase core domain proteinchromosome CDS2906452 468 - 0.521368
STM2765 putative transposasechromosome CDS2907066 267 - 0.47191
STM2768 putative transposasechromosome CDS2910681 300 + 0.533333
STM2769 putative transposasechromosome CDS2910977 867 + 0.539792
STM2938 putative cytoplasmic proteinchromosome CDS3078537 921 - 0.557003
STM3517 putative DNA-damage-inducibile proteinchromosome CDS3679971 261 - 0.45977
STM3846 putative reverse transcriptasechromosome CDS4052406 870 + 0.308046
STM4210 putative methyl-accepting chemotaxis proteinchromosome CDS4429581 954 - 0.560797
STM4449 putative copG family helix-turn-helix proteinchromosome CDS4691448 243 + 0.497942
STM4457 putative transposasechromosome CDS4702512 447 - 0.449664
STM4488 putative integrasechromosome CDS4731314 288 + 0.496528
STM4496 putative ATPase involved in DNA repairchromosome CDS4746985 3642 - 0.500549
ada O6-methylguanine-DNA methyltransferasechromosome CDS2363134 1062 - 0.607345
alkA 3-methyl-adenine DNA glycosylase IIchromosome CDS2211488 870 - 0.614943
alkB DNA repair system specific for alkylated DNAchromosome CDS2362481 651 - 0.588326
dam DNA adenine methylasechromosome CDS3638690 837 - 0.491039
dbpA ATP-dependent RNA helicasechromosome CDS1748288 1374 - 0.55313
dcm DNA cytosine methylasechromosome CDS2074329 1431 - 0.537386
deaD cysteine sulfinate desulfinasechromosome CDS3446185 1941 - 0.579083
dinG LexA regulated (SOS) repair enzymechromosome CDS887158 2145 + 0.549184
dinP DNA polymerase IVchromosome CDS357800 1056 + 0.514205
dnaA DNA replication initiator proteinchromosome CDS4043624 1401 - 0.524625
dnaB putative replicative DNA helicasechromosome CDS4466591 1416 + 0.548729
dnaC chromosome replication proteinchromosome CDS4802792 738 - 0.51084
dnaE DNA polymerase III, alpha subunitchromosome CDS269548 3483 + 0.559001
dnaG DNA primasechromosome CDS3374506 1746 + 0.517755
dnaN DNA polymerase III, beta-subunitchromosome CDS4042519 1101 - 0.567666
dnaQ DNA polymerase III, epsilon subunitchromosome CDS303402 732 + 0.510929
dnaX DNA polymerase III, tau and gamma subunitschromosome CDS540907 1929 + 0.590461
endA DNA-specific endonuclease Ichromosome CDS3255404 708 + 0.556497
exo exonuclease IX, 5'-3' exonucleasechromosome CDS3123597 816 + 0.552696
exoX DNA exonuclease Xchromosome CDS1971072 699 + 0.519313
fis site-specific DNA inversion stimulation factorchromosome CDS3556262 297 + 0.464646
gyrA DNA gyrase, subunit Achromosome CDS2373711 2637 - 0.560485
gyrB DNA gyrase, subunit Bchromosome CDS4038855 2415 - 0.554451
helD DNA helicase IVchromosome CDS1166434 2055 + 0.555718
hepA RNA polymerase associated proteinchromosome CDS110002 2907 - 0.570003
himA integration host factor (IHF), alpha subunitchromosome CDS1419069 300 + 0.483333
himD integration host factor (IHF), beta subunitchromosome CDS1067620 285 + 0.501754
hin H inversion proteinchromosome CDS2914842 573 + 0.462478
holA DNA polymerase III, delta subunitchromosome CDS707489 1032 - 0.57655
holB DNA polymerase III, delta prime subunitchromosome CDS1284262 1005 + 0.593035
holC DNA polymerase III, chi subunitchromosome CDS4719868 483 - 0.534162
holD DNA polymerase III, psi subunitchromosome CDS4812269 438 + 0.598173
hrpA ATP-dependent helicasechromosome CDS1731334 3903 - 0.537279
hrpB ATP-dependent helicasechromosome CDS218309 2475 + 0.593131
hupA DNA-binding protein HU-alphachromosome CDS4386709 273 + 0.47619
hupB DNA-binding protein HU-beta, NS1 (HU-1)chromosome CDS508105 273 + 0.494505
lig DNA ligasechromosome CDS2539001 2016 - 0.568948
mfd transcription-repair coupling factorchromosome CDS1298895 3447 - 0.570641
mod DNA methylase; restriction systemchromosome CDS403331 1959 + 0.467586
mug G/U mismatch specific DNA glycosylasechromosome CDS3378372 507 - 0.532544
mutH methyl-directed mismatch repair proteinchromosome CDS3163381 696 + 0.577586
mutL enzyme in methyl-directed mismatch repairchromosome CDS4601693 1857 + 0.582122
mutM formamidopyrimidine DNA glycosylasechromosome CDS3921131 810 - 0.553086
mutS methyl-directed mismatch repairchromosome CDS3050279 2568 + 0.570483
mutT 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS161546 396 + 0.522727
mutY adenine DNA glycosylasechromosome CDS3268685 1053 + 0.545109
nei endonuclease VIIIchromosome CDS793925 792 + 0.52904
nfi endonuclease Vchromosome CDS4385219 672 + 0.587798
nfo endonuclease IVchromosome CDS2302659 858 + 0.539627
nth endonuclease IIIchromosome CDS1528557 636 - 0.522013
ntpA dATP pyrophosphohydrolasechromosome CDS1994556 453 - 0.529801
ogt O-6-alkylguanine-DNAchromosome CDS1753663 516 + 0.550388
parC DNA topoisomerase IV, subunit Achromosome CDS3336947 2259 - 0.562196
parE DNA topoisomerase IV, subunit Bchromosome CDS3343962 1893 - 0.55626
phrB deoxyribodipyrimidine photolyase (photoreactivation)chromosome CDS774778 1422 + 0.56962
polA DNA polymerase Ichromosome CDS4206131 2787 + 0.538572
polB DNA polymerase IIchromosome CDS113082 2352 - 0.565051
priA primosomal protein N'chromosome CDS4303361 2199 - 0.591633
priB primosomal replication protein Nchromosome CDS4630916 315 + 0.533333
priC primosomal replication protein Nchromosome CDS539116 516 - 0.596899
radC putative DNA repair proteinchromosome CDS3922680 666 - 0.531532
rdgC putative exonuclease involved in removal of stalled replication forkchromosome CDS442929 912 - 0.539474
recA DNA strand exchange and recombination proteinchromosome CDS2974854 1062 - 0.547081
recB exonuclease V, beta chainchromosome CDS3146108 3546 - 0.558094
recC exonuclease V, subunitchromosome CDS3152712 3372 - 0.53796
recD exonuclease V, alpha chainchromosome CDS3144276 1836 - 0.582244
recF gap repair proteinchromosome CDS4041298 1074 - 0.547486
recG DNA helicasechromosome CDS3936881 2082 + 0.585014
recJ ssDNA exonuclease,chromosome CDS3201949 1734 - 0.573241
recN protein used in recombination and DNA repairchromosome CDS2823264 1662 + 0.548135
recO gap repair genechromosome CDS2723185 729 - 0.547325
recQ ATP-dependent DNA helicasechromosome CDS4162558 1848 + 0.545996
recR putative recombination protein, gap repairchromosome CDS543210 606 + 0.610561
rep rep helicasechromosome CDS4119763 2025 + 0.531852
res DNA restriction (DNA helicase)chromosome CDS405299 2973 + 0.491759
rhlB putative helicasechromosome CDS4123427 1266 - 0.547393
rhlE putative ATP-dependent RNA helicasechromosome CDS885586 1365 + 0.58315
rnhA RNase HI, degrades RNA of DNA-RNA hybridschromosome CDS302871 468 - 0.502137
rnhB RNAse HIIchromosome CDS268928 597 + 0.562814
rnt RNase Tchromosome CDS1511702 648 - 0.535494
ruvA Holliday junction helicase subunit Achromosome CDS1990073 612 - 0.547386
ruvB Holliday junction helicase, subunit Bchromosome CDS1989054 1011 - 0.571711
ruvC Holliday junction nucleasechromosome CDS1993228 522 - 0.559387
sbcB exonuclease Ichromosome CDS2144261 1431 + 0.544375
sbcC ATP-dependent dsDNA exonucleasechromosome CDS446241 3141 - 0.582617
sbcD ATP-dependent dsDNA exonucleasechromosome CDS449378 1203 - 0.566085
sbmC DNA gyrase inhibitorchromosome CDS2135405 468 - 0.508547
seqA negative modulator of initiation of replicationchromosome CDS759191 543 + 0.511971
smf putative protein involved in DNA uptakechromosome CDS3575680 1125 - 0.541333
srmB ATP-dependent RNA helicasechromosome CDS2782903 1335 + 0.543071
ssb ssDNA-binding proteinchromosome CDS4476286 531 + 0.596987
tag constitutive 3-methyl-adenine DNA glycosylase Ichromosome CDS3829352 582 + 0.5189
tnpA_1 IS200 transposasechromosome CDS1025166 459 + 0.459695
tnpA_2 transposase for IS200chromosome CDS2045735 459 - 0.459695
tnpA_3 transposase for IS200chromosome CDS2579331 459 - 0.459695
tnpA_4 transposase for IS200chromosome CDS3194318 459 - 0.459695
tnpA_5 transposase for IS200chromosome CDS3635160 459 - 0.459695
tnpA_6 transposase for IS200chromosome CDS4559416 459 + 0.459695
topA DNA topoisomerase type I, omega proteinchromosome CDS1809792 2598 - 0.540416
topB DNA topoisomerase IIIchromosome CDS1376657 1950 + 0.56359
umuC error-prone repair proteinchromosome CDS2079892 1269 - 0.548463
ung uracil-DNA-glycosylasechromosome CDS2786608 690 + 0.550725
uvrA DNA excision repair enzymechromosome CDS4473213 2826 - 0.571125
uvrB UvrB with UvrAC is a DNA excision repair enzymechromosome CDS864433 2022 + 0.553412
uvrC UvrCchromosome CDS2036418 1833 - 0.533552
uvrD DNA-dependent ATPase I and helicase IIchromosome CDS4155541 2163 + 0.578363
vsr DNA mismatch endonucleasechromosome CDS2073878 471 - 0.56051
wcaH GDP-mannose mannosyl hydrolasechromosome CDS2191160 504 - 0.599206
xerC putative site-specific integrase/recombinasechromosome CDS4153787 903 + 0.562569
xerD site-specific recombinasechromosome CDS3204425 897 - 0.531773
xseA exonuclease VII, large subunitchromosome CDS2626079 1350 + 0.580741
xseB exonuclease VII, small subunitchromosome CDS477416 243 - 0.54321
xthA exonuclease IIIchromosome CDS1380942 807 - 0.526642
ybaV putative DNA uptake protein and related DNA-binding proteinschromosome CDS510688 375 + 0.525333
ybaZ putative methyltransferasechromosome CDS523957 390 - 0.561538
ybjD homology with RecF proteinchromosome CDS1015860 1659 + 0.554551
ycaJ putative polynucleotide enzymechromosome CDS1042190 1344 + 0.570685
ycfH putative metal-dependent hydrolasechromosome CDS1285277 798 + 0.527569
yeaB putative NTP pyrophosphohydrolasechromosome CDS1922537 579 + 0.588946
yejH putative ATP-dependent helicasechromosome CDS2324548 1761 + 0.570131
yfaO putative NTP pyrophosphohydrolases including oxidative damage repair enzymeschromosome CDS2402597 426 + 0.495305
yffH putative pyrophosphohydrolasechromosome CDS2587089 576 - 0.487847
yfgE putative ATPase involved in DNA replication initiationchromosome CDS2609860 726 - 0.53719
ygdP putative invasion proteinchromosome CDS3162168 531 - 0.506591
yhbQ putative cytoplasmic proteinchromosome CDS3438731 318 + 0.553459
yhdJ putative methyltransferasechromosome CDS3556644 885 + 0.454237
yhhF putative methyltransferasechromosome CDS3740347 597 + 0.566164
yhhM putative inner membrane proteinchromosome CDS3741224 372 - 0.52957
yibL putative cytoplasmic proteinchromosome CDS3879649 363 + 0.506887
yicF putative DNA ligasechromosome CDS3931156 1686 - 0.556939
yigW putative hydrolase of PHP superfamilychromosome CDS4182134 783 + 0.541507
yjaD putative NTP pyrophosphohydrolases containing a Zn-fingerchromosome CDS4383331 774 + 0.549096
yjjV putative hydrolasechromosome CDS4817980 774 + 0.600775
ymfB putative MutT-like proteinchromosome CDS1322749 462 - 0.519481
yoaA putative DNA helicasechromosome CDS1918518 1911 - 0.564103
yqgF putative endonuclease involved in recombinationchromosome CDS3258665 417 + 0.556355
yqiE putative resistance proteinchromosome CDS3347734 633 - 0.530806
yraN putative endonucleasechromosome CDS3435327 396 + 0.565657
yrdD putative DNA topoisomerasechromosome CDS3574666 543 - 0.528545
yrfE putative NTP pyrophosphohydrolasechromosome CDS3649301 597 - 0.522613