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2024-05-17 08:58:13

Gene list

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COG category: Replication, recombination and repair
Organism: Escherichia coli K12, K-12

Number of genes found: 235

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Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA b1578 orf, hypothetical protein chromosome CDS1648905 657 + 0.543379
NA b0540 transposase insE for insertion sequence IS3 chromosome CDS566056 309 + 0.501618
NA b2299 putative regulatorRecName: Full=Uncharacterized Nudix hydrolase YfcD; EC=3.6.-.-; chromosome CDS2416656 543 - 0.532228
NA b1027 transposase insE for insertion sequence IS3 chromosome CDS1094361 309 - 0.501618
NA b0298 transposase insE for insertion sequence IS3 chromosome CDS314506 309 + 0.501618
NA b1459 orf, hypothetical protein chromosome CDS1529400 201 + 0.40796
NA b1458 orf, hypothetical protein chromosome CDS1528610 747 + 0.380187
NA b0373 transposase insE for insertion sequence IS3 chromosome CDS391826 309 - 0.501618
NA b1936 orf, hypothetical protein chromosome CDS2010526 279 + 0.480287
NA b3023 orf, hypothetical proteinRecName: Full=Probable transcriptional regulator YgiV; chromosome CDS3166771 483 - 0.532091
NA b2088 transposase insE for insertion sequence IS3 chromosome CDS2168251 309 + 0.501618
NA b4285 putative transposase chromosome CDS4506981 597 + 0.552764
NA b0257 putative transposase chromosome CDS271054 426 + 0.556338
ada b2213 O6-methylguanine-DNA methyltransferase; transcription activator/repressorRecName: Full=Bifunctional transcriptional activator/DNA repair enzyme Ada; AltName: Full=Regulatory protein of adaptive response; Includes: RecName: Full=Methylphosphotriester-DNA--protein-cysteine S-methyltransferase; EC=2.1.1.n11; AltName: Full=Methylphosphotriester-DNA methyltransferase; Includes: RecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=O6-methylguanine-DNA alkyltransferase; chromosome CDS2307363 1065 - 0.569014
alkA b2068 3-methyl-adenine DNA glycosylase II, inducibleRecName: Full=DNA-3-methyladenine glycosylase 2; EC=3.2.2.21; AltName: Full=3-methyladenine-DNA glycosylase II, inducible; Short=TAG II; AltName: Full=DNA-3-methyladenine glycosidase II; AltName: Full=DNA-3-methyladenine glycosylase II; chromosome CDS2144716 849 - 0.555948
alkB b2212 DNA repair system specific for alkylated DNARecName: Full=Alpha-ketoglutarate-dependent dioxygenase AlkB; EC=1.14.11.33; AltName: Full=Alkylated DNA repair protein AlkB; AltName: Full=DNA oxidative demethylase AlkB; chromosome CDS2306713 651 - 0.526882
dam b3387 DNA adenine methylaseRecName: Full=DNA adenine methylase; EC=2.1.1.72; AltName: Full=DNA adenine methyltransferase; AltName: Full=Deoxyadenosyl-methyltransferase; AltName: Full=M.EcoDam; chromosome CDS3513099 837 - 0.495818
dbpA b1343 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS1407535 1374 + 0.519651
dcm b1961 DNA cytosine methylaseRecName: Full=DNA-cytosine methyltransferase; EC=2.1.1.37; AltName: Full=M.EcoDcm; chromosome CDS2028923 1419 - 0.521494
deaD b3162 inducible ATP-independent RNA helicase chromosome CDS3303993 1941 - 0.552293
dinB b0231 DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS250898 1056 + 0.541667
dinG b0799 probably ATP-dependent helicaseRecName: Full=Probable ATP-dependent helicase DinG; EC=3.6.4.12; AltName: Full=DNA-damage-inducible protein G; chromosome CDS832293 2151 + 0.540679
dinJ b0226 damage-inducible protein JRecName: Full=Antitoxin DinJ; chromosome CDS246242 261 - 0.467433
dnaA b3702 DNA biosynthesis; initiation of chromosome replication; can be transcription regulatorRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS3880349 1404 - 0.540598
dnaB b4052 replicative DNA helicase; part of primosomeRecName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome CDS4262337 1416 + 0.538136
dnaC b4361 chromosome replication; initiation and chain elongationRecName: Full=DNA replication protein DnaC; chromosome CDS4598261 738 - 0.50542
dnaE b0184 DNA polymerase III, alpha subunitRecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS205126 3483 + 0.549526
dnaG b3066 DNA biosynthesis; DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS3209129 1746 + 0.52291
dnaN b3701 DNA polymerase III, beta-subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; AltName: Full=Beta sliding clamp; Short=Beta clamp; chromosome CDS3879244 1101 - 0.542234
dnaQ b0215 DNA polymerase III, epsilon subunitRecName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7; chromosome CDS236067 732 + 0.501366
dnaX b0470 DNA polymerase III, tau and gamma subunits; DNA elongation factor IIIRecName: Full=DNA polymerase III subunit tau; EC=2.7.7.7; AltName: Full=DNA polymerase III subunit gamma; chromosome CDS491316 1932 + 0.576605
endA b2945 DNA-specific endonuclease IRecName: Full=Endonuclease-1; EC=3.1.21.1; AltName: Full=Endonuclease I; Short=Endo I; Flags: Precursor; chromosome CDS3088369 708 + 0.548023
exo b2798 5'-3' exonuclease chromosome CDS2928987 846 + 0.527187
exoX b1844 exodeoxyribonuclease XRecName: Full=Exodeoxyribonuclease 10; EC=3.1.11.-; AltName: Full=Exodeoxyribonuclease X; Short=Exo X; Short=Exonuclease X; chromosome CDS1924144 663 + 0.518854
fimB b4312 recombinase involved in phase variation; regulator for fimARecName: Full=Type 1 fimbriae regulatory protein FimB; chromosome CDS4538980 603 + 0.434494
fimE b4313 recombinase involved in phase variation; regulator for fimARecName: Full=Type 1 fimbriae regulatory protein FimE; chromosome CDS4540060 597 + 0.469012
fis b3261 site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcriptionRecName: Full=DNA-binding protein Fis; AltName: Full=Factor-for-inversion stimulation protein; AltName: Full=Hin recombinational enhancer-binding protein; chromosome CDS3409293 297 + 0.47138
gyrA b2231 DNA gyrase, subunit A, type II topoisomeraseRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS2334815 2628 - 0.539954
gyrB b3699 DNA gyrase subunit B, type II topoisomerase, ATPase activityRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS3875728 2415 - 0.549896
hda b2496 putative DNA replication factor chromosome CDS2616097 747 - 0.531459
helD b0962 DNA helicase IVRecName: Full=Helicase IV; EC=3.6.4.12; AltName: Full=75 kDa helicase; chromosome CDS1023694 2055 + 0.530414
hepA b0059 probable ATP-dependent RNA helicaseRecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS60358 2907 - 0.54902
himA b1712 integration host factor (IHF), alpha subunit; site specific recombinationRecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1793277 300 - 0.5
himD b0912 integration host factor (IHF), beta subunit; site-specific recombinationRecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS963051 285 + 0.491228
holA b0640 DNA polymerase III, delta subunitRecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS669797 1032 - 0.523256
holB b1099 DNA polymerase III, delta prime subunitRecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS1154985 1005 + 0.540299
holC b4259 DNA polymerase III, chi subunitRecName: Full=DNA polymerase III subunit chi; EC=2.7.7.7; chromosome CDS4481860 444 - 0.540541
holD b4372 DNA polymerase III, psi subunitRecName: Full=DNA polymerase III subunit psi; EC=2.7.7.7; chromosome CDS4605826 414 + 0.577295
hrpA b1413 helicase, ATP-dependent chromosome CDS1481142 3846 + 0.535101
hrpB b0148 helicase, ATP-dependent chromosome CDS162060 2475 + 0.56404
hupA b4000 DNA-binding protein HU-alpha (HU-2)RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2; chromosome CDS4198304 273 + 0.483516
hupB b0440 DNA-binding protein HU-beta, NS1 (HU-1)RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1; chromosome CDS460675 273 + 0.490842
insA_1 b0022 IS1 protein InsARecName: Full=Insertion element IS1 1 protein InsA; AltName: Full=IS1a; chromosome CDS20233 276 - 0.528986
insA_2 b0265 IS1 protein InsARecName: Full=Insertion element IS1 2 protein InsA; AltName: Full=IS1b; chromosome CDS278824 276 - 0.532609
insA_3 b0275 IS1 protein InsARecName: Full=Insertion element IS1 3 protein InsA; AltName: Full=IS1c; chromosome CDS290295 276 - 0.532609
insA_5 b1894 IS1 protein InsARecName: Full=Insertion element IS1 5 protein InsA; AltName: Full=IS1h; chromosome CDS1976964 276 - 0.528986
insA_6 b3444 IS1 protein InsARecName: Full=Insertion element IS1 6 protein InsA; AltName: Full=IS1e; chromosome CDS3581506 276 + 0.528986
insA_7 b4294 IS1 protein InsARecName: Full=Insertion element IS1 7 protein InsA; AltName: Full=IS1f; chromosome CDS4516550 276 + 0.528986
insB_1 b0021 IS1 protein InsBRecName: Full=Insertion element IS1 1 protein InsB; AltName: Full=IS1a; chromosome CDS19811 504 - 0.545635
insB_2 b0264 IS1 protein InsBRecName: Full=Insertion element IS1 2 protein InsB; AltName: Full=IS1b; chromosome CDS278402 504 - 0.551587
insB_3 b0274 IS1 protein InsBRecName: Full=Insertion element IS1 3 protein InsB; AltName: Full=IS1c; chromosome CDS289873 504 - 0.551587
insB_4 b0988 IS1 protein InsBRecName: Full=Insertion element IS1 4 protein InsB; AltName: Full=IS1d; chromosome CDS1049250 504 + 0.547619
insB_5 b1893 IS1 protein InsBRecName: Full=Insertion element IS1 5 protein InsB; AltName: Full=IS1h; chromosome CDS1976542 504 - 0.545635
insB_6 b3445 IS1 protein InsBRecName: Full=Insertion element IS1 6 protein InsB; AltName: Full=IS1e; chromosome CDS3581700 504 + 0.545635
intA b2622 prophage CP4-57 integraseRecName: Full=Prophage CP4-57 integrase; chromosome CDS2754181 1242 + 0.475845
intB b4271 prophage P4 integrase chromosome CDS4494773 1191 + 0.457599
intD b0537 prophage DLP12 integraseRecName: Full=Prophage DLP12 integrase; AltName: Full=Prophage QSR integrase; chromosome CDS564038 1164 - 0.469072
intE b1140 prophage e14 integraseRecName: Full=Prophage lambda integrase; AltName: Full=Int(Lambda); AltName: Full=Prophage e14 integrase; chromosome CDS1198902 1128 - 0.447695
intF b0281 putative phage integraseRecName: Full=Putative prophage CP4-6 integrase; chromosome CDS294920 1401 - 0.443255
intQ b1579 putative lambdoid prophage Qin defective integrase chromosome CDS1649536 1197 + 0.421888
intR b1345 lambdoid prophage Rac integraseRecName: Full=Putative lambdoid prophage Rac integrase; chromosome CDS1410024 1236 - 0.429612
intS b2349 putative prophage CPS-53 integraseRecName: Full=Putative prophage CPS-53 integrase; chromosome CDS2464567 1158 + 0.477547
intZ b2442 putative prophage integrase chromosome CDS2556793 1296 + 0.534722
ligA b2411 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS2526183 2016 - 0.544147
mcrB b4346 component of McrBC 5-methylcytosine restriction system chromosome CDS4575981 1398 - 0.403433
mfd b1114 transcription-repair coupling factor; mutation frequency declineRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1169741 3447 - 0.547723
mutH b2831 methyl-directed mismatch repairRecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; chromosome CDS2967684 690 + 0.536232
mutL b4170 enzyme in methyl-directed mismatch repairRecName: Full=DNA mismatch repair protein MutL; chromosome CDS4395435 1848 + 0.562771
mutM b3635 formamidopyrimidine DNA glycosylaseRecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS3808366 810 - 0.538272
mutS b2733 methyl-directed mismatch repairRecName: Full=DNA mismatch repair protein MutS; chromosome CDS2855115 2562 + 0.56128
mutT b0099 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversionsRecName: Full=8-oxo-dGTP diphosphatase; Short=8-oxo-dGTPase; EC=3.6.1.55; AltName: Full=7,8-dihydro-8-oxoguanine-triphosphatase; AltName: Full=Mutator protein MutT; AltName: Full=dGTP pyrophosphohydrolase; chromosome CDS111044 390 + 0.492308
mutY b2961 adenine glycosylase; G.C--> T.A transversionsRecName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS3101035 1053 + 0.551757
nei b0714 endonuclease VIII and DNA N-glycosylase with an AP lyase activityRecName: Full=Endonuclease 8; AltName: Full=DNA glycosylase/AP lyase Nei; EC=3.2.2.-; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase Nei; AltName: Full=Endonuclease VIII; chromosome CDS745158 792 + 0.52399
nfi b3998 endonuclease V (deoxyinosine 3'endoduclease) chromosome CDS4196807 678 + 0.585546
nfo b2159 endonuclease IVRecName: Full=Endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS2248862 858 + 0.524476
nohA b1548 DNA packaging protein NU1 homolog from lambdoid prophage Qin chromosome CDS1633822 570 - 0.536842
nohB b0560 bacteriophage DNA packaging proteinRecName: Full=DNA-packaging protein NU1 homolog; chromosome CDS580057 546 + 0.525641
nth b1633 endonuclease III; specific for apurinic and/or apyrimidinic sitesRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1709547 636 + 0.492138
ntpA b1865 dATP pyrophosphohydrolaseRecName: Full=Dihydroneopterin triphosphate pyrophosphatase; EC=3.6.1.-; AltName: Full=dATP pyrophosphohydrolase; chromosome CDS1946204 453 - 0.525386
nudC b3996 NADH pyrophosphataseRecName: Full=NADH pyrophosphatase; EC=3.6.1.22; chromosome CDS4194926 774 + 0.5323
nudG b1759 CTP pyrophosphohydrolaseRecName: Full=CTP pyrophosphohydrolase; EC=3.6.1.65; chromosome CDS1839514 408 + 0.54902
ogt b1335 O-6-alkylguanine-DNA/cysteine-proteinmethyltrans feraseRecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; Short=MGMT; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS1397745 516 - 0.531008
parC b3019 DNA topoisomerase IV subunit ARecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS3161737 2259 - 0.546702
parE b3030 DNA topoisomerase IV subunit BRecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS3171526 1893 - 0.535658
phrB b0708 deoxyribodipyrimidine photolyase (photoreactivation)RecName: Full=Deoxyribodipyrimidine photo-lyase; EC=4.1.99.3; AltName: Full=DNA photolyase; AltName: Full=Photoreactivating enzyme; chromosome CDS738730 1419 + 0.534884
pin b1158 inversion of adjacent DNA; at locus of e14 elementRecName: Full=DNA-invertase from lambdoid prophage e14; chromosome CDS1208908 555 + 0.488288
pinQ b1545 putative DNA-invertase from lambdoid prophage QinRecName: Full=Putative DNA-invertase from lambdoid prophage Qin; chromosome CDS1631646 591 + 0.448393
pinR b1374 putative DNA-invertase from lambdoid prophage RacRecName: Full=Putative DNA-invertase from lambdoid prophage Rac; chromosome CDS1431108 591 - 0.446701
polA b3863 DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonucleaseRecName: Full=DNA polymerase I; Short=POL I; EC=2.7.7.7; chromosome CDS4044989 2787 + 0.519555
polB b0060 DNA polymerase IIRecName: Full=DNA polymerase II; Short=Pol II; EC=2.7.7.7; chromosome CDS63429 2352 - 0.553571
priA b3935 primosomal protein N'(= factor Y)(putative helicase)RecName: Full=Primosomal protein N; EC=3.6.4.-; AltName: Full=ATP-dependent helicase PriA; AltName: Full=Replication factor Y; chromosome CDS4122635 2199 - 0.574807
priB b4201 primosomal replication protein NRecName: Full=Primosomal replication protein n; chromosome CDS4423543 315 + 0.52381
priC b0467 primosomal replication protein N''RecName: Full=Primosomal replication protein N; chromosome CDS489509 528 - 0.589015
radC b3638 DNA repair protein chromosome CDS3809914 675 - 0.48
recA b2699 DNA strand exchange and renaturation, DNA-dependent ATPase, DNA-and ATP-dependent coproteaseRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS2820730 1062 - 0.541431
recB b2820 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleaseRecName: Full=RecBCD enzyme subunit RecB; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 135 kDa polypeptide; AltName: Full=Exodeoxyribonuclease V beta chain; AltName: Full=Exonuclease V subunit RecB; Short=ExoV subunit RecB; AltName: Full=Helicase/nuclease RecBCD subunit RecB; chromosome CDS2950483 3543 - 0.545583
recC b2822 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleaseRecName: Full=RecBCD enzyme subunit RecC; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 125 kDa polypeptide; AltName: Full=Exodeoxyribonuclease V gamma chain; AltName: Full=Exonuclease V subunit RecC; Short=ExoV subunit RecC; chromosome CDS2957082 3369 - 0.536064
recD b2819 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleaseRecName: Full=RecBCD enzyme subunit RecD; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 67 kDa polypeptide; AltName: Full=Exodeoxyribonuclease V alpha chain; AltName: Full=Exonuclease V subunit RecD; Short=ExoV subunit RecD; AltName: Full=Helicase/nuclease RecBCD subunit RecD; chromosome CDS2948657 1827 - 0.552819
recF b3700 ssDNA and dsDNA binding, ATP bindingRecName: Full=DNA replication and repair protein RecF; chromosome CDS3878171 1074 - 0.550279
recG b3652 DNA helicase, resolution of Holliday junctions, branch migrationRecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; chromosome CDS3823233 2082 + 0.572046
recJ b2892 ssDNA exonuclease, 5'--> 3' specificRecName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS3034395 1734 - 0.566321
recN b2616 protein used in recombination and DNA repairRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS2749817 1662 + 0.518051
recO b2565 protein interacts with RecR and possibly RecF proteinsRecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS2699763 729 - 0.540466
recQ b3822 ATP-dependent DNA helicaseRecName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.4.12; chromosome CDS4003887 1830 + 0.551366
recR b0472 recombination and repairRecName: Full=Recombination protein RecR; chromosome CDS493629 606 + 0.577558
recT b1349 recombinase, DNA renaturationRecName: Full=Protein RecT; AltName: Full=P33; chromosome CDS1412008 810 - 0.471605
relB b1564 negative regulator of translationRecName: Full=Antitoxin RelB; chromosome CDS1643657 240 - 0.470833
rep b3778 rep helicase, a single-stranded DNA dependent ATPaseRecName: Full=ATP-dependent DNA helicase Rep; EC=3.6.4.12; chromosome CDS3958700 2022 + 0.534619
rfaP b3630 lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS coRecName: Full=Lipopolysaccharide core heptose(I) kinase RfaP; EC=2.7.1.-; chromosome CDS3803176 798 - 0.433584
rfaZ b3624 lipopolysaccharide core biosynthesisRecName: Full=Lipopolysaccharide core biosynthesis protein RfaZ; chromosome CDS3797368 852 - 0.325117
rhlB b3780 putative ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS3962388 1266 - 0.525276
rhlE b0797 putative ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS830095 1365 + 0.567033
rnhA b0214 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replicationRecName: Full=Ribonuclease HI; Short=RNase HI; EC=3.1.26.4; AltName: Full=Ribonuclease H; Short=RNase H; chromosome CDS235535 468 - 0.504274
rnhB b0183 RNAse HII, degrades RNA of DNA-RNA hybridsRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS204493 597 + 0.572864
rnt b1652 RNase T, degrades tRNARecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS1726371 648 + 0.541667
rus b0550 endodeoxyribonuclease RUS (Holliday junction resolvase)RecName: Full=Crossover junction endodeoxyribonuclease RusA; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RusA; AltName: Full=Holliday junction resolvase; chromosome CDS572594 363 + 0.53168
ruvA b1861 Holliday junction helicase subunit B; branch migration; repairRecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1943389 612 - 0.53268
ruvB b1860 Holliday junction helicase subunit A; branch migration; repairRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1942370 1011 - 0.527201
ruvC b1863 Holliday junction nuclease; resolution of structures; repairRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS1944879 522 - 0.559387
sbcB b2011 exonuclease I, 3'--> 5' specific; deoxyribophosphodiesteraseRecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; EC=3.1.11.1; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase; chromosome CDS2080780 1428 + 0.5007
sbcC b0397 ATP-dependent dsDNA exonucleaseRecName: Full=Nuclease SbcCD subunit C; chromosome CDS411831 3147 - 0.537973
sbcD b0398 ATP-dependent dsDNA exonucleaseRecName: Full=Nuclease SbcCD subunit D; chromosome CDS414974 1203 - 0.532835
sbmC b2009 SbmC proteinRecName: Full=DNA gyrase inhibitor; chromosome CDS2078813 474 - 0.472574
seqA b0687 negative modulator of initiation of replicationRecName: Full=Negative modulator of initiation of replication; chromosome CDS712210 546 + 0.496337
smf b4473 orf, hypothetical proteinRecName: Full=Protein smf; chromosome CDS3430458 1125 - 0.509333
srmB b2576 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome CDS2710918 1335 + 0.547566
ssb b4059 ssDNA-binding proteinRecName: Full=Single-stranded DNA-binding protein; Short=SSB; AltName: Full=Helix-destabilizing protein; chromosome CDS4272148 537 + 0.581006
t150 b3558 IS150 putative transposaseRecName: Full=Putative transposase InsK for insertion sequence element IS150; chromosome CDS3719221 852 + 0.428404
tag b3549 3-methyl-adenine DNA glycosylase I, constitutiveRecName: Full=DNA-3-methyladenine glycosylase 1; EC=3.2.2.20; AltName: Full=3-methyladenine-DNA glycosylase I, constitutive; Short=TAG I; AltName: Full=DNA-3-methyladenine glycosidase I; AltName: Full=DNA-3-methyladenine glycosylase I; chromosome CDS3711115 564 + 0.498227
tatD b4483 cytoplasmic DnaseRecName: Full=Tat-linked quality control protein TatD; AltName: Full=Deoxyribonuclease TatD; Short=DNase TatD; EC=3.1.21.-; chromosome CDS4021577 783 + 0.542784
topA b1274 DNA topoisomerase type I, omega proteinRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS1329072 2598 + 0.517706
topB b1763 DNA topoisomerase IIIRecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS1843023 1962 - 0.551478
tra5_1 b0372 transposase insF for insertion sequence IS3RecName: Full=Transposase InsF for insertion sequence IS3B; chromosome CDS390963 867 - 0.551326
tra5_2 b0541 transposase insF for insertion sequence IS3RecName: Full=Transposase InsF for insertion sequence IS3C; chromosome CDS566361 867 + 0.551326
tra5_3 b1026 transposase insF for insertion sequence IS3RecName: Full=Transposase InsF for insertion sequence IS3D; chromosome CDS1093498 867 - 0.551326
tra5_4 b2089 transposase insF for insertion sequence IS3RecName: Full=Transposase InsF for insertion sequence IS3E; chromosome CDS2168556 867 + 0.551326
tra5_5 b0299 transposase insF for insertion sequence IS3RecName: Full=Transposase InsF for insertion sequence IS3A; chromosome CDS314811 867 + 0.551326
tra8_1 b0256 IS30 transposaseRecName: Full=Transposase InsI for insertion sequence element IS30A; chromosome CDS269827 1152 + 0.458333
tra8_2 b1404 IS30 transposaseRecName: Full=Transposase InsI for insertion sequence element IS30C; chromosome CDS1467382 1152 + 0.458333
tra8_3 b4284 IS30 transposaseRecName: Full=Transposase InsI for insertion sequence element IS30D; chromosome CDS4505489 1152 - 0.458333
trs5_1 b0259 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5A; chromosome CDS273325 1017 - 0.546706
trs5_10 b3218 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5R; chromosome CDS3363724 1017 - 0.546706
trs5_11 b3505 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5T; chromosome CDS3650205 1017 - 0.546706
trs5_2 b0552 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5B; chromosome CDS573960 1017 - 0.546706
trs5_3 b0656 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5D; chromosome CDS687220 1017 - 0.546706
trs5_4 b1331 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5F; chromosome CDS1394100 1017 + 0.546706
trs5_5 b1370 IS5Y transposase chromosome CDS1425770 981 - 0.554536
trs5_6 b1994 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5H; chromosome CDS2064329 1017 - 0.546706
trs5_7 b2030 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5I; chromosome CDS2099919 1017 - 0.546706
trs5_8 b2192 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5K; chromosome CDS2287087 1017 - 0.546706
trs5_9 b2982 IS5 transposaseRecName: Full=Transposase InsH for insertion sequence element IS5LO; chromosome CDS3128200 1017 + 0.546706
umuC b1184 SOS mutagenesis and repairRecName: Full=Protein UmuC; chromosome CDS1230409 1269 + 0.50985
ung b2580 uracil-DNA-glycosylaseRecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS2714776 690 + 0.521739
uvrA b4058 excision nuclease subunit ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS4269072 2823 - 0.560751
uvrB b0779 DNA repair; excision nuclease subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS812749 2022 + 0.535608
uvrC b1913 excinuclease ABC, subunit C; repair of UV damage to DNA chromosome CDS1990898 1767 - 0.518959
uvrD b3813 DNA-dependent ATPase I and helicase IIRecName: Full=DNA helicase II; EC=3.6.4.12; chromosome CDS3996006 2163 + 0.576976
vsr b1960 DNA mismatch endonuclease, patch repair proteinRecName: Full=Very short patch repair protein; EC=3.1.-.-; AltName: Full=DNA mismatch endonuclease; AltName: Full=V.EcoKDcm; AltName: Full=Vsr mismatch endonuclease; chromosome CDS2028472 471 - 0.56051
wcaH b2051 GDP-mannose mannosyl hydrolase chromosome CDS2123767 483 - 0.544513
xerC b3811 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell divisionRecName: Full=Tyrosine recombinase XerC; chromosome CDS3994310 897 + 0.539576
xerD b2894 site-specific recombinaseRecName: Full=Tyrosine recombinase XerD; chromosome CDS3036869 897 - 0.530658
xseA b2509 exonuclease VII, large subunitRecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS2632254 1371 + 0.532458
xseB b0422 exonuclease VII, small subunitRecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS440325 243 - 0.55144
xthA b1749 exonuclease IIIRecName: Full=Exodeoxyribonuclease III; Short=EXO III; Short=Exonuclease III; EC=3.1.11.2; AltName: Full=AP endonuclease VI; chromosome CDS1830452 807 + 0.534077
yafM b0228 orf, hypothetical proteinRecName: Full=Uncharacterized protein YafM; chromosome CDS247637 498 + 0.447791
yagA b0267 orf, hypothetical proteinRecName: Full=Uncharacterized protein YagA; chromosome CDS280053 1155 - 0.620779
yagL b0278 DNA-binding proteinRecName: Full=Uncharacterized protein YagL; chromosome CDS292444 699 - 0.373391
yaiD b0393 orf, hypothetical proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS408332 912 - 0.515351
ybaV b0442 orf, hypothetical proteinRecName: Full=Uncharacterized protein YbaV; Flags: Precursor; chromosome CDS463161 372 + 0.548387
ybaZ b0454 orf, hypothetical proteinRecName: Full=Uncharacterized protein YbaZ; chromosome CDS475206 390 - 0.541026
ybcK b0544 orf, hypothetical proteinRecName: Full=Uncharacterized protein YbcK; chromosome CDS568125 1527 + 0.355599
ybfD b0706 putative DNA ligaseRecName: Full=H repeat-associated protein YbfD; AltName: Full=ORF-H3; chromosome CDS737315 762 + 0.396325
ybjD b0876 orf, hypothetical proteinRecName: Full=Uncharacterized protein YbjD; chromosome CDS915696 1659 + 0.531043
ycaJ b0892 putative polynucleotide enzymeRecName: Full=Replication-associated recombination protein A; chromosome CDS937217 1344 + 0.535714
ycfH b1100 orf, hypothetical proteinRecName: Full=Uncharacterized deoxyribonuclease YcfH; EC=3.1.21.-; chromosome CDS1156000 798 + 0.508772
ydaV b1360 putative DNA replication factorRecName: Full=Uncharacterized protein YdaV; chromosome CDS1420007 747 + 0.527443
ydcC b1460 H repeat-associated protein (ORF-H)RecName: Full=H repeat-associated protein YdcC; AltName: Full=ORF-H; chromosome CDS1529840 1137 + 0.417766
ydcM b1432 orf, hypothetical protein chromosome CDS1501681 1209 + 0.514475
ydjQ b1741 putative excinuclease subunitRecName: Full=Excinuclease cho; EC=3.1.25.-; AltName: Full=Endonuclease cho; AltName: Full=UvrC homolog protein; chromosome CDS1821539 888 + 0.515766
yeaB b1813 orf, hypothetical proteinRecName: Full=Uncharacterized Nudix hydrolase NudL; EC=3.6.1.-; chromosome CDS1894194 579 + 0.549223
yeeS b2002 putative DNA repair protein, RADC familyRecName: Full=UPF0758 protein YeeS; chromosome CDS2074332 447 + 0.581656
yejH b2184 putative ATP-dependent helicaseRecName: Full=Uncharacterized protein YejH; chromosome CDS2278654 1761 + 0.531516
yfaO b2251 orf, hypothetical proteinRecName: Full=Nucleoside triphosphatase NudI; EC=3.6.1.-; chromosome CDS2362576 426 + 0.476526
yffH b2467 orf, hypothetical proteinRecName: Full=GDP-mannose pyrophosphatase NudK; EC=3.6.1.-; chromosome CDS2580925 576 - 0.486111
yfgJ b2510 orf, hypothetical protein chromosome CDS2633621 252 - 0.472222
yfjY b2644 putative DNA repair proteinRecName: Full=UPF0758 protein YfjY; chromosome CDS2774408 483 + 0.542443
ygbT b2755 orf, hypothetical proteinRecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS2876877 918 - 0.513072
ygdP b2830 putative invasion proteinRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; AltName: Full=Ap5A pyrophosphatase; chromosome CDS2966469 531 - 0.493409
ygjF b3068 orf, hypothetical proteinRecName: Full=G/U mismatch-specific DNA glycosylase; EC=3.2.2.28; AltName: Full=Double-strand-specific uracil glycosylase; AltName: Full=Mismatch-specific uracil DNA-glycosylase; Short=MUG; chromosome CDS3212989 507 - 0.536489
yhbQ b3155 orf, hypothetical proteinRecName: Full=UPF0213 protein YhbQ; chromosome CDS3297988 303 + 0.544554
yhdJ b3262 putative methyltransferase chromosome CDS3409669 891 + 0.47587
yhhF b3465 orf, hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; AltName: Full=16S rRNA m2G966 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase; chromosome CDS3602416 597 + 0.539364
yhhI b3484 putative receptorRecName: Full=H repeat-associated protein YhhI; AltName: Full=ORF-H; chromosome CDS3622401 1137 + 0.415128
yi21_1 b0360 IS2 hypothetical protein chromosome CDS380530 411 + 0.508516
yi21_2 b1403 IS2 hypothetical protein chromosome CDS1466808 411 - 0.508516
yi21_3 b1997 IS2 hypothetical protein chromosome CDS2067839 411 - 0.508516
yi21_4 b2861 IS2 hypothetical protein chromosome CDS2995257 366 - 0.530055
yi21_5 b3044 IS2 hypothetical protein chromosome CDS3184209 366 + 0.530055
yi21_6 b4272 IS2 hypothetical protein chromosome CDS4496250 411 + 0.508516
yi22_1 b0361 IS2 hypothetical proteinRecName: Full=Transposase InsD for insertion element IS2A; chromosome CDS380898 906 + 0.550773
yi22_2 b1402 IS2 hypothetical proteinRecName: Full=Transposase InsD for insertion element IS2D; chromosome CDS1465945 906 - 0.550773
yi22_3 b1996 IS2 hypothetical proteinRecName: Full=Transposase InsD for insertion element IS2F; chromosome CDS2066976 906 - 0.550773
yi22_4 b2860 IS2 hypothetical proteinRecName: Full=Transposase InsD for insertion element IS2H; chromosome CDS2994394 906 - 0.550773
yi22_5 b3045 IS2 hypothetical proteinRecName: Full=Transposase InsD for insertion element IS2I; chromosome CDS3184532 906 + 0.550773
yi22_6 b4273 IS2 hypothetical proteinRecName: Full=Transposase InsD for insertion element IS2K; chromosome CDS4496618 906 + 0.550773
yi41 b4278 IS4 hypothetical proteinRecName: Full=Transposase InsG for insertion sequence element IS4; chromosome CDS4500126 1329 - 0.541761
yi5A b3557 IS150 hypothetical proteinRecName: Full=Insertion element IS150 uncharacterized 19.7 kDa protein; AltName: Full=ORFA; chromosome CDS3718703 522 + 0.461686
yi81_1 b0016 IS186 hypothetical proteinRecName: Full=Putative transposase InsL for insertion sequence element IS186A; chromosome CDS15445 1113 + 0.519317
yi81_2 b0582 IS186 hypothetical proteinRecName: Full=Putative transposase InsL for insertion sequence element IS186B; chromosome CDS607288 1113 + 0.519317
yi81_3 b2394 putative transposase insL for insertion sequence IS186 chromosome CDS2512347 1119 + 0.521001
yi91a b0255 transposase insN for insertion sequence element IS911A chromosome CDS269466 405 + 0.437037
yi91b b4283 transposase insN for insertion sequence element IS911B chromosome CDS4505184 303 + 0.438944
yicF b3647 putative enzyme chromosome CDS3817511 1689 - 0.525755
yjbI b4038 orf, hypothetical protein chromosome CDS4248978 1329 + 0.331828
yjhR b4308 putative frameshift suppressor chromosome CDS4533038 1017 + 0.437561
yjjV b4378 orf, hypothetical protein chromosome CDS4611648 636 + 0.558176
ykfC b0258 orf, hypothetical protein chromosome CDS272086 1131 + 0.548187
ykfG b0247 putative DNA repair proteinRecName: Full=UPF0758 protein YkfG; chromosome CDS263480 477 - 0.584906
ymfB b1134 putative Nudix hydrolaseRecName: Full=Phosphatase NudJ; EC=3.6.1.-; chromosome CDS1193050 462 - 0.502164
yoaA b1808 putative enzymeRecName: Full=Probable ATP-dependent helicase YoaA; EC=3.6.4.12; chromosome CDS1889349 1911 - 0.552067
yqgF b2949 orf, hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS3091522 417 + 0.529976
yqiE b3034 orf, hypothetical proteinRecName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; AltName: Full=ADP-ribose diphosphatase; AltName: Full=ADP-ribose phosphohydrolase; Short=ASPPase; AltName: Full=Adenosine diphosphoribose pyrophosphatase; Short=ADPR-PPase; chromosome CDS3175303 630 - 0.507937
yraN b3148 orf, hypothetical proteinRecName: Full=UPF0102 protein YraN; chromosome CDS3293416 396 + 0.545455
yrdD b3283 putative DNA topoisomeraseRecName: Full=Uncharacterized protein YrdD; chromosome CDS3429442 543 - 0.497238
yrfE b3397 orf, hypothetical proteinRecName: Full=ADP compounds hydrolase NudE; EC=3.6.1.-; chromosome CDS3523611 561 - 0.508021