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2024-05-02 14:35:13

Gene list

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COG category: Replication, recombination and repair
Organism: Escherichia coli K12, K-12

Number of genes found: 235

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Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA b2299 putative regulatorchromosome CDS2416656 543 - 0.532228
NA b1936 orf, hypothetical proteinchromosome CDS2010526 279 + 0.480287
NA b0257 putative transposasechromosome CDS271054 426 + 0.556338
NA b2088 transposase insE for insertion sequence IS3chromosome CDS2168251 309 + 0.501618
NA b1459 orf, hypothetical proteinchromosome CDS1529400 201 + 0.40796
NA b1027 transposase insE for insertion sequence IS3chromosome CDS1094361 309 - 0.501618
NA b3023 orf, hypothetical proteinchromosome CDS3166771 483 - 0.532091
NA b1458 orf, hypothetical proteinchromosome CDS1528610 747 + 0.380187
NA b4285 putative transposasechromosome CDS4506981 597 + 0.552764
NA b0373 transposase insE for insertion sequence IS3chromosome CDS391826 309 - 0.501618
NA b1578 orf, hypothetical proteinchromosome CDS1648905 657 + 0.543379
NA b0540 transposase insE for insertion sequence IS3chromosome CDS566056 309 + 0.501618
NA b0298 transposase insE for insertion sequence IS3chromosome CDS314506 309 + 0.501618
ada b2213 O6-methylguanine-DNA methyltransferase; transcription activator/repressorchromosome CDS2307363 1065 - 0.569014
alkA b2068 3-methyl-adenine DNA glycosylase II, induciblechromosome CDS2144716 849 - 0.555948
alkB b2212 DNA repair system specific for alkylated DNAchromosome CDS2306713 651 - 0.526882
dam b3387 DNA adenine methylasechromosome CDS3513099 837 - 0.495818
dbpA b1343 ATP-dependent RNA helicasechromosome CDS1407535 1374 + 0.519651
dcm b1961 DNA cytosine methylasechromosome CDS2028923 1419 - 0.521494
deaD b3162 inducible ATP-independent RNA helicasechromosome CDS3303993 1941 - 0.552293
dinB b0231 DNA polymerase IVchromosome CDS250898 1056 + 0.541667
dinG b0799 probably ATP-dependent helicasechromosome CDS832293 2151 + 0.540679
dinJ b0226 damage-inducible protein Jchromosome CDS246242 261 - 0.467433
dnaA b3702 DNA biosynthesis; initiation of chromosome replication; can be transcription regulatorchromosome CDS3880349 1404 - 0.540598
dnaB b4052 replicative DNA helicase; part of primosomechromosome CDS4262337 1416 + 0.538136
dnaC b4361 chromosome replication; initiation and chain elongationchromosome CDS4598261 738 - 0.50542
dnaE b0184 DNA polymerase III, alpha subunitchromosome CDS205126 3483 + 0.549526
dnaG b3066 DNA biosynthesis; DNA primasechromosome CDS3209129 1746 + 0.52291
dnaN b3701 DNA polymerase III, beta-subunitchromosome CDS3879244 1101 - 0.542234
dnaQ b0215 DNA polymerase III, epsilon subunitchromosome CDS236067 732 + 0.501366
dnaX b0470 DNA polymerase III, tau and gamma subunits; DNA elongation factor IIIchromosome CDS491316 1932 + 0.576605
endA b2945 DNA-specific endonuclease Ichromosome CDS3088369 708 + 0.548023
exo b2798 5'-3' exonucleasechromosome CDS2928987 846 + 0.527187
exoX b1844 exodeoxyribonuclease Xchromosome CDS1924144 663 + 0.518854
fimB b4312 recombinase involved in phase variation; regulator for fimAchromosome CDS4538980 603 + 0.434494
fimE b4313 recombinase involved in phase variation; regulator for fimAchromosome CDS4540060 597 + 0.469012
fis b3261 site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcriptionchromosome CDS3409293 297 + 0.47138
gyrA b2231 DNA gyrase, subunit A, type II topoisomerasechromosome CDS2334815 2628 - 0.539954
gyrB b3699 DNA gyrase subunit B, type II topoisomerase, ATPase activitychromosome CDS3875728 2415 - 0.549896
hda b2496 putative DNA replication factorchromosome CDS2616097 747 - 0.531459
helD b0962 DNA helicase IVchromosome CDS1023694 2055 + 0.530414
hepA b0059 probable ATP-dependent RNA helicasechromosome CDS60358 2907 - 0.54902
himA b1712 integration host factor (IHF), alpha subunit; site specific recombinationchromosome CDS1793277 300 - 0.5
himD b0912 integration host factor (IHF), beta subunit; site-specific recombinationchromosome CDS963051 285 + 0.491228
holA b0640 DNA polymerase III, delta subunitchromosome CDS669797 1032 - 0.523256
holB b1099 DNA polymerase III, delta prime subunitchromosome CDS1154985 1005 + 0.540299
holC b4259 DNA polymerase III, chi subunitchromosome CDS4481860 444 - 0.540541
holD b4372 DNA polymerase III, psi subunitchromosome CDS4605826 414 + 0.577295
hrpA b1413 helicase, ATP-dependentchromosome CDS1481142 3846 + 0.535101
hrpB b0148 helicase, ATP-dependentchromosome CDS162060 2475 + 0.56404
hupA b4000 DNA-binding protein HU-alpha (HU-2)chromosome CDS4198304 273 + 0.483516
hupB b0440 DNA-binding protein HU-beta, NS1 (HU-1)chromosome CDS460675 273 + 0.490842
insA_1 b0022 IS1 protein InsAchromosome CDS20233 276 - 0.528986
insA_2 b0265 IS1 protein InsAchromosome CDS278824 276 - 0.532609
insA_3 b0275 IS1 protein InsAchromosome CDS290295 276 - 0.532609
insA_5 b1894 IS1 protein InsAchromosome CDS1976964 276 - 0.528986
insA_6 b3444 IS1 protein InsAchromosome CDS3581506 276 + 0.528986
insA_7 b4294 IS1 protein InsAchromosome CDS4516550 276 + 0.528986
insB_1 b0021 IS1 protein InsBchromosome CDS19811 504 - 0.545635
insB_2 b0264 IS1 protein InsBchromosome CDS278402 504 - 0.551587
insB_3 b0274 IS1 protein InsBchromosome CDS289873 504 - 0.551587
insB_4 b0988 IS1 protein InsBchromosome CDS1049250 504 + 0.547619
insB_5 b1893 IS1 protein InsBchromosome CDS1976542 504 - 0.545635
insB_6 b3445 IS1 protein InsBchromosome CDS3581700 504 + 0.545635
intA b2622 prophage CP4-57 integrasechromosome CDS2754181 1242 + 0.475845
intB b4271 prophage P4 integrasechromosome CDS4494773 1191 + 0.457599
intD b0537 prophage DLP12 integrasechromosome CDS564038 1164 - 0.469072
intE b1140 prophage e14 integrasechromosome CDS1198902 1128 - 0.447695
intF b0281 putative phage integrasechromosome CDS294920 1401 - 0.443255
intQ b1579 putative lambdoid prophage Qin defective integrasechromosome CDS1649536 1197 + 0.421888
intR b1345 lambdoid prophage Rac integrasechromosome CDS1410024 1236 - 0.429612
intS b2349 putative prophage CPS-53 integrasechromosome CDS2464567 1158 + 0.477547
intZ b2442 putative prophage integrasechromosome CDS2556793 1296 + 0.534722
ligA b2411 DNA ligasechromosome CDS2526183 2016 - 0.544147
mcrB b4346 component of McrBC 5-methylcytosine restriction systemchromosome CDS4575981 1398 - 0.403433
mfd b1114 transcription-repair coupling factor; mutation frequency declinechromosome CDS1169741 3447 - 0.547723
mutH b2831 methyl-directed mismatch repairchromosome CDS2967684 690 + 0.536232
mutL b4170 enzyme in methyl-directed mismatch repairchromosome CDS4395435 1848 + 0.562771
mutM b3635 formamidopyrimidine DNA glycosylasechromosome CDS3808366 810 - 0.538272
mutS b2733 methyl-directed mismatch repairchromosome CDS2855115 2562 + 0.56128
mutT b0099 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversionschromosome CDS111044 390 + 0.492308
mutY b2961 adenine glycosylase; G.C--> T.A transversionschromosome CDS3101035 1053 + 0.551757
nei b0714 endonuclease VIII and DNA N-glycosylase with an AP lyase activitychromosome CDS745158 792 + 0.52399
nfi b3998 endonuclease V (deoxyinosine 3'endoduclease)chromosome CDS4196807 678 + 0.585546
nfo b2159 endonuclease IVchromosome CDS2248862 858 + 0.524476
nohA b1548 DNA packaging protein NU1 homolog from lambdoid prophage Qinchromosome CDS1633822 570 - 0.536842
nohB b0560 bacteriophage DNA packaging proteinchromosome CDS580057 546 + 0.525641
nth b1633 endonuclease III; specific for apurinic and/or apyrimidinic siteschromosome CDS1709547 636 + 0.492138
ntpA b1865 dATP pyrophosphohydrolasechromosome CDS1946204 453 - 0.525386
nudC b3996 NADH pyrophosphatasechromosome CDS4194926 774 + 0.5323
nudG b1759 CTP pyrophosphohydrolasechromosome CDS1839514 408 + 0.54902
ogt b1335 O-6-alkylguanine-DNA/cysteine-proteinmethyltrans ferasechromosome CDS1397745 516 - 0.531008
parC b3019 DNA topoisomerase IV subunit Achromosome CDS3161737 2259 - 0.546702
parE b3030 DNA topoisomerase IV subunit Bchromosome CDS3171526 1893 - 0.535658
phrB b0708 deoxyribodipyrimidine photolyase (photoreactivation)chromosome CDS738730 1419 + 0.534884
pin b1158 inversion of adjacent DNA; at locus of e14 elementchromosome CDS1208908 555 + 0.488288
pinQ b1545 putative DNA-invertase from lambdoid prophage Qinchromosome CDS1631646 591 + 0.448393
pinR b1374 putative DNA-invertase from lambdoid prophage Racchromosome CDS1431108 591 - 0.446701
polA b3863 DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonucleasechromosome CDS4044989 2787 + 0.519555
polB b0060 DNA polymerase IIchromosome CDS63429 2352 - 0.553571
priA b3935 primosomal protein N'(= factor Y)(putative helicase)chromosome CDS4122635 2199 - 0.574807
priB b4201 primosomal replication protein Nchromosome CDS4423543 315 + 0.52381
priC b0467 primosomal replication protein N''chromosome CDS489509 528 - 0.589015
radC b3638 DNA repair proteinchromosome CDS3809914 675 - 0.48
recA b2699 DNA strand exchange and renaturation, DNA-dependent ATPase, DNA-and ATP-dependent coproteasechromosome CDS2820730 1062 - 0.541431
recB b2820 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleasechromosome CDS2950483 3543 - 0.545583
recC b2822 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleasechromosome CDS2957082 3369 - 0.536064
recD b2819 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonucleasechromosome CDS2948657 1827 - 0.552819
recF b3700 ssDNA and dsDNA binding, ATP bindingchromosome CDS3878171 1074 - 0.550279
recG b3652 DNA helicase, resolution of Holliday junctions, branch migrationchromosome CDS3823233 2082 + 0.572046
recJ b2892 ssDNA exonuclease, 5'--> 3' specificchromosome CDS3034395 1734 - 0.566321
recN b2616 protein used in recombination and DNA repairchromosome CDS2749817 1662 + 0.518051
recO b2565 protein interacts with RecR and possibly RecF proteinschromosome CDS2699763 729 - 0.540466
recQ b3822 ATP-dependent DNA helicasechromosome CDS4003887 1830 + 0.551366
recR b0472 recombination and repairchromosome CDS493629 606 + 0.577558
recT b1349 recombinase, DNA renaturationchromosome CDS1412008 810 - 0.471605
relB b1564 negative regulator of translationchromosome CDS1643657 240 - 0.470833
rep b3778 rep helicase, a single-stranded DNA dependent ATPasechromosome CDS3958700 2022 + 0.534619
rfaP b3630 lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS cochromosome CDS3803176 798 - 0.433584
rfaZ b3624 lipopolysaccharide core biosynthesischromosome CDS3797368 852 - 0.325117
rhlB b3780 putative ATP-dependent RNA helicasechromosome CDS3962388 1266 - 0.525276
rhlE b0797 putative ATP-dependent RNA helicasechromosome CDS830095 1365 + 0.567033
rnhA b0214 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replicationchromosome CDS235535 468 - 0.504274
rnhB b0183 RNAse HII, degrades RNA of DNA-RNA hybridschromosome CDS204493 597 + 0.572864
rnt b1652 RNase T, degrades tRNAchromosome CDS1726371 648 + 0.541667
rus b0550 endodeoxyribonuclease RUS (Holliday junction resolvase)chromosome CDS572594 363 + 0.53168
ruvA b1861 Holliday junction helicase subunit B; branch migration; repairchromosome CDS1943389 612 - 0.53268
ruvB b1860 Holliday junction helicase subunit A; branch migration; repairchromosome CDS1942370 1011 - 0.527201
ruvC b1863 Holliday junction nuclease; resolution of structures; repairchromosome CDS1944879 522 - 0.559387
sbcB b2011 exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterasechromosome CDS2080780 1428 + 0.5007
sbcC b0397 ATP-dependent dsDNA exonucleasechromosome CDS411831 3147 - 0.537973
sbcD b0398 ATP-dependent dsDNA exonucleasechromosome CDS414974 1203 - 0.532835
sbmC b2009 SbmC proteinchromosome CDS2078813 474 - 0.472574
seqA b0687 negative modulator of initiation of replicationchromosome CDS712210 546 + 0.496337
smf b4473 orf, hypothetical proteinchromosome CDS3430458 1125 - 0.509333
srmB b2576 ATP-dependent RNA helicasechromosome CDS2710918 1335 + 0.547566
ssb b4059 ssDNA-binding proteinchromosome CDS4272148 537 + 0.581006
t150 b3558 IS150 putative transposasechromosome CDS3719221 852 + 0.428404
tag b3549 3-methyl-adenine DNA glycosylase I, constitutivechromosome CDS3711115 564 + 0.498227
tatD b4483 cytoplasmic Dnasechromosome CDS4021577 783 + 0.542784
topA b1274 DNA topoisomerase type I, omega proteinchromosome CDS1329072 2598 + 0.517706
topB b1763 DNA topoisomerase IIIchromosome CDS1843023 1962 - 0.551478
tra5_1 b0372 transposase insF for insertion sequence IS3chromosome CDS390963 867 - 0.551326
tra5_2 b0541 transposase insF for insertion sequence IS3chromosome CDS566361 867 + 0.551326
tra5_3 b1026 transposase insF for insertion sequence IS3chromosome CDS1093498 867 - 0.551326
tra5_4 b2089 transposase insF for insertion sequence IS3chromosome CDS2168556 867 + 0.551326
tra5_5 b0299 transposase insF for insertion sequence IS3chromosome CDS314811 867 + 0.551326
tra8_1 b0256 IS30 transposasechromosome CDS269827 1152 + 0.458333
tra8_2 b1404 IS30 transposasechromosome CDS1467382 1152 + 0.458333
tra8_3 b4284 IS30 transposasechromosome CDS4505489 1152 - 0.458333
trs5_1 b0259 IS5 transposasechromosome CDS273325 1017 - 0.546706
trs5_10 b3218 IS5 transposasechromosome CDS3363724 1017 - 0.546706
trs5_11 b3505 IS5 transposasechromosome CDS3650205 1017 - 0.546706
trs5_2 b0552 IS5 transposasechromosome CDS573960 1017 - 0.546706
trs5_3 b0656 IS5 transposasechromosome CDS687220 1017 - 0.546706
trs5_4 b1331 IS5 transposasechromosome CDS1394100 1017 + 0.546706
trs5_5 b1370 IS5Y transposasechromosome CDS1425770 981 - 0.554536
trs5_6 b1994 IS5 transposasechromosome CDS2064329 1017 - 0.546706
trs5_7 b2030 IS5 transposasechromosome CDS2099919 1017 - 0.546706
trs5_8 b2192 IS5 transposasechromosome CDS2287087 1017 - 0.546706
trs5_9 b2982 IS5 transposasechromosome CDS3128200 1017 + 0.546706
umuC b1184 SOS mutagenesis and repairchromosome CDS1230409 1269 + 0.50985
ung b2580 uracil-DNA-glycosylasechromosome CDS2714776 690 + 0.521739
uvrA b4058 excision nuclease subunit Achromosome CDS4269072 2823 - 0.560751
uvrB b0779 DNA repair; excision nuclease subunit Bchromosome CDS812749 2022 + 0.535608
uvrC b1913 excinuclease ABC, subunit C; repair of UV damage to DNAchromosome CDS1990898 1767 - 0.518959
uvrD b3813 DNA-dependent ATPase I and helicase IIchromosome CDS3996006 2163 + 0.576976
vsr b1960 DNA mismatch endonuclease, patch repair proteinchromosome CDS2028472 471 - 0.56051
wcaH b2051 GDP-mannose mannosyl hydrolasechromosome CDS2123767 483 - 0.544513
xerC b3811 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell divisionchromosome CDS3994310 897 + 0.539576
xerD b2894 site-specific recombinasechromosome CDS3036869 897 - 0.530658
xseA b2509 exonuclease VII, large subunitchromosome CDS2632254 1371 + 0.532458
xseB b0422 exonuclease VII, small subunitchromosome CDS440325 243 - 0.55144
xthA b1749 exonuclease IIIchromosome CDS1830452 807 + 0.534077
yafM b0228 orf, hypothetical proteinchromosome CDS247637 498 + 0.447791
yagA b0267 orf, hypothetical proteinchromosome CDS280053 1155 - 0.620779
yagL b0278 DNA-binding proteinchromosome CDS292444 699 - 0.373391
yaiD b0393 orf, hypothetical proteinchromosome CDS408332 912 - 0.515351
ybaV b0442 orf, hypothetical proteinchromosome CDS463161 372 + 0.548387
ybaZ b0454 orf, hypothetical proteinchromosome CDS475206 390 - 0.541026
ybcK b0544 orf, hypothetical proteinchromosome CDS568125 1527 + 0.355599
ybfD b0706 putative DNA ligasechromosome CDS737315 762 + 0.396325
ybjD b0876 orf, hypothetical proteinchromosome CDS915696 1659 + 0.531043
ycaJ b0892 putative polynucleotide enzymechromosome CDS937217 1344 + 0.535714
ycfH b1100 orf, hypothetical proteinchromosome CDS1156000 798 + 0.508772
ydaV b1360 putative DNA replication factorchromosome CDS1420007 747 + 0.527443
ydcC b1460 H repeat-associated protein (ORF-H)chromosome CDS1529840 1137 + 0.417766
ydcM b1432 orf, hypothetical proteinchromosome CDS1501681 1209 + 0.514475
ydjQ b1741 putative excinuclease subunitchromosome CDS1821539 888 + 0.515766
yeaB b1813 orf, hypothetical proteinchromosome CDS1894194 579 + 0.549223
yeeS b2002 putative DNA repair protein, RADC familychromosome CDS2074332 447 + 0.581656
yejH b2184 putative ATP-dependent helicasechromosome CDS2278654 1761 + 0.531516
yfaO b2251 orf, hypothetical proteinchromosome CDS2362576 426 + 0.476526
yffH b2467 orf, hypothetical proteinchromosome CDS2580925 576 - 0.486111
yfgJ b2510 orf, hypothetical proteinchromosome CDS2633621 252 - 0.472222
yfjY b2644 putative DNA repair proteinchromosome CDS2774408 483 + 0.542443
ygbT b2755 orf, hypothetical proteinchromosome CDS2876877 918 - 0.513072
ygdP b2830 putative invasion proteinchromosome CDS2966469 531 - 0.493409
ygjF b3068 orf, hypothetical proteinchromosome CDS3212989 507 - 0.536489
yhbQ b3155 orf, hypothetical proteinchromosome CDS3297988 303 + 0.544554
yhdJ b3262 putative methyltransferasechromosome CDS3409669 891 + 0.47587
yhhF b3465 orf, hypothetical proteinchromosome CDS3602416 597 + 0.539364
yhhI b3484 putative receptorchromosome CDS3622401 1137 + 0.415128
yi21_1 b0360 IS2 hypothetical proteinchromosome CDS380530 411 + 0.508516
yi21_2 b1403 IS2 hypothetical proteinchromosome CDS1466808 411 - 0.508516
yi21_3 b1997 IS2 hypothetical proteinchromosome CDS2067839 411 - 0.508516
yi21_4 b2861 IS2 hypothetical proteinchromosome CDS2995257 366 - 0.530055
yi21_5 b3044 IS2 hypothetical proteinchromosome CDS3184209 366 + 0.530055
yi21_6 b4272 IS2 hypothetical proteinchromosome CDS4496250 411 + 0.508516
yi22_1 b0361 IS2 hypothetical proteinchromosome CDS380898 906 + 0.550773
yi22_2 b1402 IS2 hypothetical proteinchromosome CDS1465945 906 - 0.550773
yi22_3 b1996 IS2 hypothetical proteinchromosome CDS2066976 906 - 0.550773
yi22_4 b2860 IS2 hypothetical proteinchromosome CDS2994394 906 - 0.550773
yi22_5 b3045 IS2 hypothetical proteinchromosome CDS3184532 906 + 0.550773
yi22_6 b4273 IS2 hypothetical proteinchromosome CDS4496618 906 + 0.550773
yi41 b4278 IS4 hypothetical proteinchromosome CDS4500126 1329 - 0.541761
yi5A b3557 IS150 hypothetical proteinchromosome CDS3718703 522 + 0.461686
yi81_1 b0016 IS186 hypothetical proteinchromosome CDS15445 1113 + 0.519317
yi81_2 b0582 IS186 hypothetical proteinchromosome CDS607288 1113 + 0.519317
yi81_3 b2394 putative transposase insL for insertion sequence IS186chromosome CDS2512347 1119 + 0.521001
yi91a b0255 transposase insN for insertion sequence element IS911Achromosome CDS269466 405 + 0.437037
yi91b b4283 transposase insN for insertion sequence element IS911Bchromosome CDS4505184 303 + 0.438944
yicF b3647 putative enzymechromosome CDS3817511 1689 - 0.525755
yjbI b4038 orf, hypothetical proteinchromosome CDS4248978 1329 + 0.331828
yjhR b4308 putative frameshift suppressorchromosome CDS4533038 1017 + 0.437561
yjjV b4378 orf, hypothetical proteinchromosome CDS4611648 636 + 0.558176
ykfC b0258 orf, hypothetical proteinchromosome CDS272086 1131 + 0.548187
ykfG b0247 putative DNA repair proteinchromosome CDS263480 477 - 0.584906
ymfB b1134 putative Nudix hydrolasechromosome CDS1193050 462 - 0.502164
yoaA b1808 putative enzymechromosome CDS1889349 1911 - 0.552067
yqgF b2949 orf, hypothetical proteinchromosome CDS3091522 417 + 0.529976
yqiE b3034 orf, hypothetical proteinchromosome CDS3175303 630 - 0.507937
yraN b3148 orf, hypothetical proteinchromosome CDS3293416 396 + 0.545455
yrdD b3283 putative DNA topoisomerasechromosome CDS3429442 543 - 0.497238
yrfE b3397 orf, hypothetical proteinchromosome CDS3523611 561 - 0.508021