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2024-05-18 21:45:41

Gene list

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COG category: Replication, recombination and repair
Organism: Haemophilus influenzae Rd KW20

Number of genes found: 119

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Haemophilus influenzae Rd KW20
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
HI0011 DNA polymerase III, psi subunit (holD)RecName: Full=DNA polymerase III subunit psi; EC=2.7.7.7; chromosome CDS11857 405 - 0.409877
HI0018 uracil DNA glycosylase (ung)RecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS18676 660 + 0.406061
HI0041 exodeoxyribonuclease III (xthA)RecName: Full=Exodeoxyribonuclease III; Short=EXO III; Short=Exonuclease III; EC=3.1.11.2; chromosome CDS43660 804 - 0.379353
HI0057 excinuclease ABC, subunit C (uvrC)RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS57655 1830 - 0.39071
HI0067 DNA mismatch repair protein (mutL)RecName: Full=DNA mismatch repair protein MutL; chromosome CDS70214 1890 + 0.395238
HI0070 DNA repair protein (recN)RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS76082 1677 - 0.376863
HI0081 conserved hypothetical proteinRecName: Full=Uncharacterized deoxyribonuclease HI_0081; EC=3.1.21.-; chromosome CDS87148 789 + 0.387833
HI0112 H. influenzae predicted coding region HI0112RecName: Full=Uncharacterized protein HI_0112; chromosome CDS120092 297 - 0.289562
HI0137 DNA polymerase III, epsilon subunit (dnaQ)RecName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7; chromosome CDS152492 771 - 0.364462
HI0138 ribonuclease H (rnh)RecName: Full=Ribonuclease HI; Short=RNase HI; EC=3.1.26.4; chromosome CDS153323 465 + 0.365591
HI0192 seqA protein (seqA)RecName: Full=Negative modulator of initiation of replication; chromosome CDS206691 594 + 0.345118
HI0209 DNA adenine methylase (dam)RecName: Full=DNA adenine methylase; EC=2.1.1.72; AltName: Full=DNA adenine methyltransferase; AltName: Full=Deoxyadenosyl-methyltransferase; AltName: Full=M.HindIV; chromosome CDS223852 861 + 0.349593
HI0217 conserved hypothetical proteinRecName: Full=Uncharacterized protein HI_0217; chromosome CDS234763 531 + 0.322034
HI0220.2 H. influenzae predicted coding region HI0220.2RecName: Full=Uncharacterized protein HI_0220.2; chromosome CDS241428 645 - 0.336434
HI0231 ATP-dependent RNA helicase (deaD)RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS261572 1842 + 0.419653
HI0249 excinuclease ABC, subunit A (uvrA)RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS279439 2832 - 0.411723
HI0250 single-stranded DNA binding protein (ssb)RecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS282424 507 + 0.443787
HI0260.1 H. influenzae predicted coding region HI0260.1RecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS290110 726 - 0.381543
HI0305 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS339194 420 + 0.404762
HI0306 conserved hypothetical proteinRecName: Full=Recombination-associated protein RdgC; chromosome CDS339663 909 - 0.372937
HI0309 integrase/recombinase (xerD)RecName: Full=Tyrosine recombinase XerD; chromosome CDS342649 894 + 0.419463
HI0312 Holliday junction DNA helicase (ruvB)RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS344054 1008 - 0.426587
HI0313 Holliday junction DNA helicase (ruvA)RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS345069 615 - 0.380488
HI0314 crossover junction endodeoxyribonuclease (ruvC)RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS345746 573 - 0.415358
HI0316 datP pyrophosphohydrolase (ntpA)RecName: Full=Dihydroneopterin triphosphate pyrophosphatase; EC=3.6.1.-; AltName: Full=dATP pyrophosphohydrolase; chromosome CDS347265 477 - 0.36478
HI0324 ribonuclease T (rnt)RecName: Full=Ribonuclease T; EC=3.1.13.-; AltName: Full=Exoribonuclease T; Short=RNase T; chromosome CDS352323 690 + 0.413043
HI0326 H. influenzae predicted coding region HI0326RecName: Full=Uncharacterized protein HI_0326; chromosome CDS354711 264 + 0.340909
HI0332 DNA repair protein (recO)RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS359129 711 + 0.40647
HI0339 primosomal protein N' (priA)RecName: Full=Primosomal protein N; EC=3.6.4.-; AltName: Full=ATP-dependent helicase PriA; chromosome CDS365938 2193 - 0.412221
HI0387 ATP-dependent helicase (dinG)RecName: Full=Probable ATP-dependent helicase HI_0387; EC=3.6.4.12; chromosome CDS407000 1923 + 0.367655
HI0397 exodeoxyribonuclease VII, large subunit (xseA)RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS418569 1320 + 0.418182
HI0398 conserved hypothetical proteinRecName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; AltName: Full=ADP-ribose diphosphatase; AltName: Full=ADP-ribose phosphohydrolase; Short=ASPPase; AltName: Full=Adenosine diphosphoribose pyrophosphatase; Short=ADPR-PPase; chromosome CDS420065 654 + 0.415902
HI0402 methylated-DNA--protein-cysteine methyltransferase (dat1)RecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; Short=MGMT; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS423567 573 + 0.399651
HI0403 DNA mismatch repair protein (mutH)RecName: Full=DNA mismatch repair protein MutH; AltName: Full=Methyl-directed mismatch repair protein; chromosome CDS424136 672 + 0.421131
HI0422 ATP-dependent RNA helicase (srmB)RecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome CDS444029 1320 - 0.415909
HI0430 DNA-binding protein HU-alpha (hupA)RecName: Full=DNA-binding protein HU; chromosome CDS453698 411 - 0.347932
HI0432 conserved hypothetical proteinRecName: Full=NADH pyrophosphatase; EC=3.6.1.22; chromosome CDS454736 795 - 0.388679
HI0443 recombination protein (recR)RecName: Full=Recombination protein RecR; chromosome CDS464716 603 + 0.436153
HI0444 DNA topoisomerase III (topB)RecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS465334 1956 + 0.402863
HI0454 conserved hypothetical proteinRecName: Full=Uncharacterized deoxyribonuclease HI_0454; EC=3.1.21.-; chromosome CDS475521 783 - 0.408685
HI0455 DNA polymerase III, delta' subunit (holB)RecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS476358 984 - 0.401423
HI0493 conserved hypothetical proteinRecName: Full=Uncharacterized transposase-like protein HI_0493; chromosome CDS510454 357 + 0.355742
HI0513 modification methylase (hindIIM)RecName: Full=Probable modification methylase HindII; Short=M.HindII; EC=2.1.1.72; AltName: Full=Adenine-specific methyltransferase HindII; chromosome CDS528932 1557 - 0.2614
HI0532 DNA primase (dnaG)RecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS554392 1782 + 0.398429
HI0546 primosomal replication protein N (priB)RecName: Full=Primosomal replication protein n; chromosome CDS568473 285 - 0.368421
HI0554 H. influenzae predicted coding region HI0554RecName: Full=Uncharacterized protein HI_0554; chromosome CDS575203 543 - 0.298343
HI0567 DNA gyrase, subunit B (gyrB)RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS585576 2421 - 0.410574
HI0600 recA protein (recA)RecName: Full=Protein RecA; AltName: Full=Recombinase 1; AltName: Full=Recombinase A; chromosome CDS621492 1065 - 0.391549
HI0616 ATP-dependent helicase (hepA)RecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS648322 2772 + 0.409091
HI0649 ATP-dependent DNA helicase (rep)RecName: Full=ATP-dependent DNA helicase Rep; EC=3.6.4.12; chromosome CDS693363 2013 - 0.408346
HI0654 DNA-3-methyladenine glycosidase I (tagI)RecName: Full=DNA-3-methyladenine glycosylase; EC=3.2.2.20; AltName: Full=3-methyladenine-DNA glycosidase; Short=TAG; chromosome CDS698164 558 - 0.392473
HI0656.1 conserved hypothetical proteinRecName: Full=Uncharacterized protein HI_0656.1; chromosome CDS700107 537 - 0.389199
HI0676 integrase/recombinase (xerC)RecName: Full=Tyrosine recombinase XerC; chromosome CDS718776 888 - 0.408784
HI0707 DNA mismatch repair protein (mutS)RecName: Full=DNA mismatch repair protein MutS; chromosome CDS751161 2586 + 0.428848
HI0710 H. influenzae predicted coding region HI0710RecName: Full=Putative antitoxin RelB; chromosome CDS757421 297 + 0.346801
HI0728 ATP-dependent DNA helicase (recQ)RecName: Full=ATP-dependent DNA helicase RecQ; EC=3.6.4.12; chromosome CDS780622 1860 + 0.396774
HI0739 DNA polymerase III, alpha subunit (dnaE)RecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS796139 3480 - 0.417529
HI0759 A/G-specific adenine glycosylase (mutY)RecName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS822600 1137 + 0.386983
HI0767 conserved hypothetical proteinRecName: Full=Ribosomal RNA small subunit methyltransferase D; EC=2.1.1.171; AltName: Full=16S rRNA m2G966 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase; chromosome CDS829898 582 - 0.371134
HI0856 DNA polymerase I (polA)RecName: Full=DNA polymerase I; Short=POL I; EC=2.7.7.7; chromosome CDS902724 2793 - 0.403151
HI0892 ATP-dependent RNA helicase (rhlB)RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS945227 1257 + 0.409706
HI0901 conserved hypothetical proteinRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS957302 591 + 0.401015
HI0910 mutator mutT protein (mutT)RecName: Full=8-oxo-dGTP diphosphatase; Short=8-oxo-dGTPase; EC=3.6.1.55; AltName: Full=7,8-dihydro-8-oxoguanine-triphosphatase; AltName: Full=Mutator protein MutT; AltName: Full=dGTP pyrophosphohydrolase; chromosome CDS964502 411 + 0.381995
HI0923 DNA polymerase III, delta subunit (holA)RecName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS980328 1035 + 0.363285
HI0942 exodeoxyribonuclease V, gamma chain (recC)RecName: Full=RecBCD enzyme subunit RecC; EC=3.1.11.5; AltName: Full=Exonuclease V subunit RecC; Short=ExoV subunit RecC; AltName: Full=Helicase/nuclease RecBCD subunit RecC; chromosome CDS999495 3366 + 0.366607
HI0946 formamidopyrimidine-DNA glycosylase (fpg)RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1005582 816 - 0.378676
HI0952 DNA repair protein (radC)RecName: Full=UPF0758 protein HI_0952; chromosome CDS1011307 705 - 0.339007
HI0980 Hin recombinational enhancer binding protein (fis)RecName: Full=DNA-binding protein Fis; chromosome CDS1038094 300 + 0.37
HI0985 DNA processing chain A (dprA)RecName: Full=Protein smf; AltName: Full=DNA-processing chain A; chromosome CDS1041677 1122 - 0.4082
HI0991 DNA/ATP binding protein (recF)RecName: Full=DNA replication and repair protein RecF; chromosome CDS1053715 1080 - 0.399074
HI0992 DNA polymerase III, beta subunit (dnaN)RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1054796 1101 - 0.38238
HI0993 chromosomal replication initiator protein (dnaA)RecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1055909 1365 - 0.396337
HI1008 conserved hypothetical proteinRecName: Full=Uncharacterized protein HI_1008; Flags: Precursor; chromosome CDS1073118 339 + 0.39233
HI1041 modification methylaseRecName: Full=Modification methylase HindV; Short=M.HindV; EC=2.1.1.37; AltName: Full=Cytosine-specific methyltransferase HindV; chromosome CDS1105412 915 + 0.315847
HI1056 H. influenzae predicted coding region HI1056RecName: Full=Putative type III restriction-modification system HindVIP enzyme mod; Short=M.HindVIP; EC=2.1.1.72; AltName: Full=HindVIP methyltransferase; chromosome CDS1121801 1890 - 0.351852
HI1058 H. influenzae predicted coding region HI1058RecName: Full=Uncharacterized protein HI_1058; Flags: Precursor; chromosome CDS1123464 585 - 0.401709
HI1059 ribonuclease HII (rnhB)RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1124264 594 - 0.425926
HI1070 ATP-dependent helicase (hrpa)RecName: Full=ATP-dependent RNA helicase HrpA homolog; EC=3.6.4.13; chromosome CDS1134200 3915 - 0.425287
HI1100 DNA ligase (lig)RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1161552 2040 - 0.407843
HI1182 H. influenzae predicted coding region HI1182RecName: Full=DNA ligase; EC=6.5.1.1; AltName: Full=Polydeoxyribonucleotide synthase [ATP]; chromosome CDS1248907 558 + 0.358423
HI1183 H. influenzae predicted coding region HI1183RecName: Full=DNA ligase; EC=6.5.1.1; AltName: Full=Polydeoxyribonucleotide synthase [ATP]; chromosome CDS1249536 177 + 0.378531
HI1188 DNA helicase II (uvrD)RecName: Full=DNA helicase II; EC=3.6.4.12; chromosome CDS1253722 2184 - 0.399267
HI1214 single-stranded-DNA-specific exonuclease (recJ)RecName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS1281398 1728 + 0.403356
HI1221 integration host factor, beta-subunit (himD)RecName: Full=Integration host factor subunit beta; Short=IHF-beta; chromosome CDS1292005 285 + 0.357895
HI1225.1 conserved hypothetical proteinRecName: Full=Uncharacterized protein HI_1225.1; chromosome CDS1294919 696 - 0.33477
HI1229 DNA polymerase III, subunits gamma and tau (dnaX)RecName: Full=DNA polymerase III subunit tau/gamma; EC=2.7.7.7; chromosome CDS1297779 2067 - 0.377842
HI1247 excinuclease ABC, subunit B (uvrB)RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1322490 2040 - 0.398039
HI1258 transcription-repair coupling factor (mfd)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1332180 3441 + 0.401918
HI1264 DNA gyrase, subunit A (gyrA)RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1341719 2643 - 0.41695
HI1280 conserved hypothetical proteinRecName: Full=Uncharacterized protein HI_1280; chromosome CDS1356988 276 + 0.384058
HI1287 type I modification enzyme (hsdM)RecName: Full=Putative type I restriction enzyme HindVIIP M protein; Short=M.HindVIIP; EC=2.1.1.72; chromosome CDS1367826 1332 - 0.487237
HI1296 nuclease, putativeRecName: Full=Uncharacterized endonuclease HI_1296; EC=3.1.-.-; Flags: Precursor; chromosome CDS1375488 537 - 0.370577
HI1313 integration host factor, alpha-subunit (himA)RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha; chromosome CDS1391712 291 + 0.378007
HI1321 exodeoxyribonuclease V, beta chain (recB)RecName: Full=RecBCD enzyme subunit RecB; EC=3.1.11.5; AltName: Full=Exonuclease V subunit RecB; Short=ExoV subunit RecB; AltName: Full=Helicase/nuclease RecBCD subunit RecB; chromosome CDS1396509 3636 + 0.357811
HI1322 exodeoxyribonuclease V, alpha chain (recD)RecName: Full=RecBCD enzyme subunit RecD; EC=3.1.11.5; AltName: Full=Exonuclease V subunit RecD; Short=ExoV subunit RecD; AltName: Full=Helicase/nuclease RecBCD subunit RecD; chromosome CDS1400144 1923 + 0.383255
HI1328.1 H. influenzae predicted coding region HI1328.1RecName: Full=Uncharacterized transposase-like protein HI_1328.1; chromosome CDS1406758 372 - 0.360215
HI1329 IS1016-V6 protein (IS1016-V6)RecName: Full=Uncharacterized protein HI_1329; chromosome CDS1407095 312 - 0.394231
HI1365 DNA topoisomerase I (topA)RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS1450938 2607 + 0.391638
HI1377 exodeoxyribonuclease I (sbcB)RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; EC=3.1.11.1; AltName: Full=DNA deoxyribophosphodiesterase; Short=dRPase; chromosome CDS1472239 1422 + 0.353727
HI1392 modification methylase (hindIIIM)RecName: Full=Modification methylase HindIII; Short=M.HindIII; EC=2.1.1.72; AltName: Full=Adenine-specific methyltransferase HindIII; chromosome CDS1490870 930 - 0.305376
HI1397 DNA polymerase III, chi subunit (holC)RecName: Full=DNA polymerase III subunit chi; EC=2.7.7.7; chromosome CDS1493866 435 - 0.381609
HI1411 terminase, small subunitRecName: Full=Uncharacterized protein HI_1411; chromosome CDS1506035 516 - 0.393411
HI1424 integrase/recombinase, putativeRecName: Full=Putative integrase/recombinase HI_1414; chromosome CDS1512159 915 - 0.397814
HI1437 exodeoxyribonuclease, small subunit (xseB)RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1526179 255 + 0.368627
HI1478 transposase (muA)RecName: Full=Mu-like prophage FluMu transposase A; chromosome CDS1561212 2064 + 0.481589
HI1480 H. influenzae predicted coding region HI1480RecName: Full=Uncharacterized protein HI_1480; chromosome CDS1563537 471 - 0.392781
HI1512 conserved hypothetical proteinRecName: Full=Mu-like prophage FluMu tail tube protein; chromosome CDS1582885 357 + 0.467787
HI1528 topoisomerase IV, subunit B (parE)RecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1598289 1899 + 0.417062
HI1529 topoisomerase IV, subunit A (parC)RecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1600254 2244 + 0.402852
HI1564 H. influenzae predicted coding region HI1564RecName: Full=Uncharacterized protein HI_1564; chromosome CDS1633127 153 - 0.372549
HI1574 replicative DNA helicase (dnaB)RecName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome CDS1641702 1515 + 0.39934
HI1577 IS1016-V6 protein, putativeRecName: Full=Uncharacterized protein HI_1577; chromosome CDS1646128 219 + 0.3379
HI1590 conserved hypothetical proteinRecName: Full=Replication-associated recombination protein A; chromosome CDS1658455 1341 - 0.417599
HI1656 conserved hypothetical proteinRecName: Full=UPF0102 protein HI_1656; chromosome CDS1722664 360 + 0.358333
HI1664 conserved hypothetical proteinRecName: Full=Uncharacterized deoxyribonuclease HI_1664; EC=3.1.21.-; chromosome CDS1733161 780 - 0.35641
HI1689 endonuclease III (nth)RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1759288 636 + 0.382075
HI1720 conserved hypothetical proteinRecName: Full=Uncharacterized protein HI_1720; chromosome CDS1793079 567 + 0.386243
HI1721 transposase, putativeRecName: Full=Uncharacterized transposase-like protein HI_1721; chromosome CDS1793813 651 + 0.382488
HI1740 ATP-dependent DNA helicase (recG)RecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; chromosome CDS1824562 2082 - 0.417867