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2024-04-28 21:37:27

Gene list

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COG category: Replication, recombination and repair
Organism: Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343

Number of genes found: 195

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Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BF2275 conserved hypothetical proteinchromosome CDS2663341 468 + 0.438034
NA BF1668 putative ATP-dependent RNA helicasechromosome CDS1940577 1284 - 0.450156
NA BF2284 putative phage integrasechromosome CDS2677465 1164 + 0.324742
NA BF3590 putative DNA topoisomerasechromosome CDS4233138 2151 - 0.442585
NA BF1928 putative RumB/ImpB like DNA repair proteinchromosome CDS2248666 1284 - 0.426791
NA BF1845 putative integrase/transposasechromosome CDS2153557 1215 + 0.502058
NA BF3839 putative phage integrasechromosome CDS4530338 1230 + 0.453659
NA BF2324 putative single-strand binding proteinchromosome CDS2717325 390 - 0.464103
NA BF3280 conserved hypothetical proteinchromosome CDS3867576 288 - 0.378472
NA BF1760 conserved hypothetical proteinchromosome CDS2049929 456 - 0.539474
NA BF4034 putative primosomal protein N'chromosome CDS4738766 2460 - 0.499187
NA BF3139 putative exported proteinchromosome CDS3659765 1020 - 0.503922
NA BF3598 conserved hypothetical proteinchromosome CDS4246012 492 + 0.461382
NA BF2916 putative CTP pyrophosphohydrolasechromosome CDS3383733 393 - 0.409669
NA BF0465 putative integrase/recombinasechromosome CDS542119 588 + 0.338435
NA BF2480 conserved hypothetical proteinchromosome CDS2880481 1020 + 0.405882
NA BF1137 putative transposasechromosome CDS1396032 879 - 0.461889
NA BF4076 hypothetical protein; conserved hypothetical proteinchromosome CDS4798677 1029 - 0.434402
NA BF1833 putative bacteriophage integrasechromosome CDS2138890 1233 + 0.449311
NA BF0263 conserved hypothetical proteinchromosome CDS293840 501 - 0.449102
NA BF0134 putative RNA helicase dead-box proteinchromosome CDS140054 1944 - 0.490741
NA BF0958 putative reverse transcriptasechromosome CDS1198207 1113 + 0.447439
NA BF3774 putative exodeoxyribonuclease VII large subunitchromosome CDS4456914 1233 - 0.545823
NA BF3951 conserved hypothetical proteinchromosome CDS4663652 933 - 0.422294
NA BF0593 putative integrase/transposasechromosome CDS714211 1182 - 0.334179
NA BF3531 putative DNAse related proteinchromosome CDS4155612 777 - 0.43758
NA BF4213 conserved hypothetical proteinchromosome CDS4977652 1659 - 0.423146
NA BF2963 putative transcription-repair coupling factorchromosome CDS3443950 3378 - 0.469805
NA BF3106 putative endonucleasechromosome CDS3625845 678 + 0.488201
NA BF3072 putative septum formation initiator-related proteinchromosome CDS3575844 303 + 0.462046
NA BF0248 possible DNA repair protein RecOchromosome CDS276679 729 + 0.408779
NA BF1917 conserved hypothetical proteinchromosome CDS2235856 474 + 0.466245
NA BF0173 putative SNF family helicasechromosome CDS187162 3051 - 0.443133
NA BF0909 putative helicase proteinchromosome CDS1138716 2001 - 0.477261
NA BF3706 putative DEAD box helicasechromosome CDS4366360 1905 + 0.496063
NA BF0078 putative tatD-related DNAse proteinchromosome CDS74032 636 + 0.43239
NA BF1967 putative histone-like DNA-binding proteinchromosome CDS2297848 276 + 0.376812
NA BF3418 putative DNA methylasechromosome CDS4033075 861 + 0.335656
NA BF2112 putative RNA-directed DNA polymerase from retronchromosome CDS2467809 849 - 0.269729
NA BF2573 conserved hypothetical proteinchromosome CDS2998759 264 - 0.32197
NA BF1470 putative DNA primasechromosome CDS1737593 912 + 0.548246
NA BF1785 putative DNA primasechromosome CDS2070680 975 - 0.513846
NA BF1120 putative modification enzyme of type III restriction-modification systemchromosome CDS1376084 1908 + 0.439727
NA BF1538 putative phage integrase/recombinasechromosome CDS1799717 807 + 0.389095
NA BF0754 putative non-specific DNA binding proteinchromosome CDS918036 480 + 0.508333
NA BF3568 putative exported phosphatasechromosome CDS4200590 939 - 0.400426
NA BF2924 hypothetical proteinchromosome CDS3394853 1176 - 0.464286
NA BF1569 putative A/G-specific adenine glycosylasechromosome CDS1824820 1047 + 0.458453
NA BF0704 conserved hypothetical proteinchromosome CDS860985 1851 - 0.386818
NA BF1630 conserved hypothetical proteinchromosome CDS1904081 207 - 0.415459
NA BF3754 conserved hypothetical exported proteinchromosome CDS4434148 873 + 0.429553
NA BF3972 putative transmembrane DNA mismatch repair-like proteinchromosome CDS4689470 1815 + 0.448485
NA BF2917 putative methylcytosine-specific restriction related proteinchromosome CDS3384516 1227 + 0.327628
NA BF1945 putative AAA family ATPase proteinchromosome CDS2268836 1272 - 0.482704
NA BF4041 putative transposasechromosome CDS4749746 999 - 0.453453
NA BF0679 putative ATP-dependent exodeoxyribonucleasechromosome CDS825016 1419 + 0.432699
NA BF2780 putative recombinase/integrasechromosome CDS3238557 1140 + 0.455263
NA BF0013 conserved hypothetical exported proteinchromosome CDS14771 2028 + 0.394477
NA BF3773 putative exodeoxyribonuclease VII small subunitchromosome CDS4456606 213 - 0.394366
NA BF3679 putative non-specific DNA-binding proteinchromosome CDS4344883 447 - 0.498881
NA BF2857 putative DNA polymerase III beta chainchromosome CDS3320373 1125 - 0.450667
NA BF2150 putative IS elementchromosome CDS2500319 948 - 0.433544
NA BF2751 hypothetical proteinchromosome CDS3207636 477 + 0.444444
NA BF3749 putative exported proteinchromosome CDS4424709 2037 + 0.468336
NA BF2982 putative exonucleasechromosome CDS3466286 1233 - 0.51176
NA BF4071 putative IstB IS21 family transposase proteinchromosome CDS4792853 756 - 0.429894
NA BF0246 DNA gyrase subunit Bchromosome CDS273876 1959 - 0.456355
NA BF4235 putative bacteriophage integrasechromosome CDS5012284 1242 - 0.435588
NA BF4111 putative methylated-DNA--protein-cysteine methyltransferasechromosome CDS4840241 519 - 0.423892
NA BF4080 putative bacteriophage integrasechromosome CDS4802485 1359 - 0.447388
NA BF1102 conserved hypothetical protein with RecF/RecN/SMC N-terminal domainchromosome CDS1352577 2076 + 0.281792
NA BF1795 putative bacteriophage integrasechromosome CDS2077209 1296 - 0.574074
NA BF3173 conserved DNA methyltransferase proteinchromosome CDS3718150 345 - 0.498551
NA BF0625 conserved hypothetical proteinchromosome CDS763205 1161 + 0.372954
NA BF3734 putative ATP-dependent DNA helicasechromosome CDS4402835 2097 - 0.443491
NA BF1218 putative DNA mismatch repair MutS proteinchromosome CDS1480010 2499 - 0.460184
NA BF3386 conserved hypothetical proteinchromosome CDS3998758 591 + 0.473773
NA BF2236 putative helicasechromosome CDS2610372 2535 + 0.437475
NA BF0541 conserved hypthetical proteinchromosome CDS642139 657 - 0.385084
NA BF0183 conserved hypothetical proteinchromosome CDS199179 714 + 0.407563
NA BF4223 conserved hypothetical proteinchromosome CDS4992713 1098 + 0.482696
NA BF1058 putative modification enzyme of type III restriction-modification systemchromosome CDS1314900 1995 - 0.437093
NA BF1685 putative bacteriophage integrasechromosome CDS1962055 1221 + 0.353808
NA BF3332 putative integrasechromosome CDS3930840 1212 - 0.396865
NA BF0877 putative DNA replication and repair proteinchromosome CDS1098268 1113 + 0.432165
NA BF1180 recombinase A (recA)chromosome CDS1434974 957 - 0.447231
NA BF0643 conserved hypothetical proteinchromosome CDS778820 336 + 0.428571
NA BF1124 putative ATP/GTP-binding proteinchromosome CDS1385269 2712 + 0.414086
NA BF3544 putative DNA-binding proteinchromosome CDS4170082 1905 + 0.494488
NA BF2316 hypothetical proteinchromosome CDS2710936 957 - 0.476489
NA BF2981 putative exonucleasechromosome CDS3463154 2964 - 0.503036
NA BF1843 putative phage integrase/recombinasechromosome CDS2151160 918 + 0.360566
NA BF4349 putative DNA processing Smf-like proteinchromosome CDS5174406 1122 - 0.498217
NA BF3071 putative DNA polymerase IIIchromosome CDS3573852 1845 - 0.472629
NA BF4099 putative NUDIX/MutT-family proteinchromosome CDS4829609 558 + 0.473118
NA BF2114 possible DNA-binding proteinchromosome CDS2469501 294 - 0.401361
NA BF3909 putative DNA polymerase III delta prime subunitchromosome CDS4605061 1110 + 0.443243
NA BF4157 conserved hypothetical proteinchromosome CDS4897673 462 - 0.419913
NA BF3296 hypothetical proteinchromosome CDS3880815 3003 + 0.271062
NA BF2555 putative helicasechromosome CDS2979834 2361 - 0.541296
NA BF2444 putative integrasechromosome CDS2836070 1245 - 0.359839
NA BF0098 putative methylasechromosome CDS102391 1341 - 0.462342
NA BF2273 hypothetical proteinchromosome CDS2660356 1302 - 0.392473
NA BF1422 putative NADH pyrophosphatasechromosome CDS1688530 783 - 0.500639
NA BF2422 hypothetical proteinchromosome CDS2813057 936 + 0.541667
NA BF0676 putative methyltransferasechromosome CDS822910 534 - 0.406367
NA BF1141 putative exonucleasechromosome CDS1401319 528 - 0.464015
NA BF0353 putative topoisomerasechromosome CDS427131 2556 - 0.489437
NA BF1219 putative transposasechromosome CDS1483022 1239 + 0.403551
NA BF2119 conserved hypothetical proteinchromosome CDS2471763 324 - 0.398148
NA BF3705 putative single-stranded-DNA-specific exonucleasechromosome CDS4364645 1719 + 0.474113
NA BF2786 conserved hypothetical proteinchromosome CDS3245780 453 - 0.587196
NA BF2609 putative DNA helicasechromosome CDS3036608 1503 - 0.457751
NA BF1292 hypothetical proteinchromosome CDS1549565 729 + 0.379973
NA BF2575 hypothetical proteinchromosome CDS2999649 672 - 0.342262
NA BF3879 putative transposasechromosome CDS4568136 843 - 0.450771
NA BF0126 conserved hypothetical proteinchromosome CDS131215 699 + 0.467811
NA BF0496 putative mismatch repair-like proteinchromosome CDS572997 1290 + 0.444961
NA BF3372 conserved hypothetical proteinchromosome CDS3979546 5874 - 0.426626
NA BF3407 conserved hypothetical proteinchromosome CDS4017111 294 - 0.414966
NA BF0812 conserved hypothetical proteinchromosome CDS1002004 3447 - 0.480418
NA BF1103 putative ATP-dependent DNA helicasechromosome CDS1354655 1779 + 0.288926
NA BF1208 putative endonuclease/exonuclease/phosphatase family proteinchromosome CDS1470967 1026 + 0.435673
NA BF2191 conserved hypothetical proteinchromosome CDS2546763 2874 - 0.417884
NA BF3653 conserved hypothetical proteinchromosome CDS4309194 1050 - 0.440952
NA BF2308 putative membrane proteinchromosome CDS2704909 459 - 0.400871
NA BF2856 putative DNA polymerase III epsilon chainchromosome CDS3319469 774 - 0.427649
NA BF4024 putative site-specific recombinasechromosome CDS4727566 882 - 0.427438
NA BF3473 conserved hypothetical proteinchromosome CDS4097977 471 + 0.447983
NA BF4168 putative outer membrane proteinchromosome CDS4909780 1521 - 0.539776
NA BF0345 conserved hypothetical proteinchromosome CDS417101 717 + 0.384937
NA BF1160 conserved hypothetical exported proteinchromosome CDS1418224 1614 + 0.373606
NA BF1250 putative transmembrane mobilisation proteinchromosome CDS1504355 2001 + 0.417791
NA BF3287 conserved hypothetical proteinchromosome CDS3873588 354 - 0.378531
NA BF2516 conserved hypothetical proteinchromosome CDS2928140 735 - 0.431293
NA BF3312 putative uracil-DNA glycosylasechromosome CDS3907571 663 + 0.405732
NA BF2878 hypothetical proteinchromosome CDS3343297 375 + 0.482667
NA BF0634 conserved hypothetical proteinchromosome CDS771509 366 - 0.434426
NA BF3283 putative transposon-related/mobilisation proteinchromosome CDS3870353 1035 + 0.439614
NA BF4052 putative transposasechromosome CDS4763923 1632 + 0.419118
NA BF1117 conserved hypothetical proteinchromosome CDS1371299 3273 + 0.454018
NA BF0388 conserved hypothetical proteinchromosome CDS475646 903 - 0.428571
NA BF3955 hypothetical proteinchromosome CDS4670007 285 - 0.410526
NA BF1533 putative integrasechromosome CDS1794681 723 - 0.405256
NA BF2111 putative bacteriophage integrasechromosome CDS2466550 1251 + 0.393285
NA BF2192 putative helicasechromosome CDS2549633 3174 - 0.423125
dbpA BF2071 putative ATP-independent RNA helicasechromosome CDS2423047 1332 + 0.498498
dinB BF1043 putative DNA polymerase IVchromosome CDS1294191 1065 + 0.462911
dnaA BF3617 putative chromosomal replication initiator proteinchromosome CDS4268926 1431 + 0.421384
dnaE BF0641 putative DNA polymerase III alpha subunitchromosome CDS774624 3795 + 0.44664
exc BF1254 putative transposon excision proteinchromosome CDS1512040 2082 + 0.480788
exoA BF2585 exodeoxyribonucleasechromosome CDS3010079 762 - 0.469816
gyrA BF2493 DNA gyrase A subunitchromosome CDS2899322 2538 + 0.444444
hup1 BF1568 putative histone-like DNA-binding protein HU1chromosome CDS1824339 276 - 0.387681
hup2 BF2506 putative histone-like DNA-binding protein HU2chromosome CDS2915346 291 - 0.357388
hup3 BF4220 putative histone-like DNA-binding protein HU3chromosome CDS4990635 273 - 0.399267
hup4 BF4226 putative histone-like DNA-binding protein HU4chromosome CDS4997946 291 - 0.43299
int BF1136 putative bacteriophage integrasechromosome CDS1394799 1116 - 0.441756
ligA BF2485 putative DNA ligasechromosome CDS2885879 1998 + 0.42993
mpi BF2779 multiple promoter invertasechromosome CDS3237948 594 - 0.441077
mutL BF3885 putative DNA mismatch repair proteinchromosome CDS4572019 1878 - 0.485091
mutS BF4369 putative DNA mismatch repair protein MutSchromosome CDS5194080 2640 - 0.429167
nfo BF1191 putative endonuclease IVchromosome CDS1449631 837 - 0.448029
parE BF4333 putative topoisomerase IV subunit Bchromosome CDS5154924 1872 + 0.463675
polA BF0104 putative DNA polymerase Ichromosome CDS108674 2826 - 0.429229
radC1 BF0428 putative DNA repair proteinchromosome CDS511327 693 - 0.480519
radC2 BF1221 putative DNA repair proteinchromosome CDS1485136 453 + 0.417219
radC3 BF1780 putative DNA repair proteinchromosome CDS2065534 444 - 0.567568
recN BF2854 DNA repair proteinchromosome CDS3316584 1686 - 0.46382
recQ1 BF3892 putative ATP-dependent DNA helicasechromosome CDS4581487 2181 - 0.455296
recQ2 BF3249 putative ATP-dependent DNA helicasechromosome CDS3823486 1824 + 0.482456
recR BF2106 putative RecR-family recombination proteinchromosome CDS2462460 618 + 0.466019
rhlE BF2388 putative ATP-dependent RNA helicasechromosome CDS2787273 1257 - 0.417661
rnhB BF0239 putative ribonuclease HIIchromosome CDS263354 606 + 0.478548
ruvA BF3480 putative holliday junction DNA helicasechromosome CDS4102982 606 - 0.475248
ruvB BF0128 putative holliday junction DNA helicasechromosome CDS132242 1029 + 0.500486
ruvC BF3101 putative crossover junction endodeoxyribonucleasechromosome CDS3620343 567 - 0.479718
ruvX BF1690 putative Holliday junction resolvasechromosome CDS1968448 417 + 0.410072
ssb BF1571 putative single-strand binding proteinchromosome CDS1827568 459 + 0.472767
tag BF3704 putative DNA-3-methyladenine glycosylase Ichromosome CDS4363874 573 - 0.4363
tnpA BF1534 putative transposase for insertion sequence element IS21-likechromosome CDS1795457 1647 + 0.490589
tnpB BF4049 putative IstB/TnpB insertion sequence IS21-like proteinchromosome CDS4759556 792 - 0.444444
tnpB BF1535 insertion sequence IS21-like putative ATP-binding proteinchromosome CDS1797072 792 + 0.501263
top1 BF1736 putative DNA topoisomerase Ichromosome CDS2027384 2103 - 0.621018
topA BF4217 putative DNA topoisomerase Ichromosome CDS4985068 2346 + 0.465899
tsr15 BF3806 tyrosine site-specific recombinasechromosome CDS4493192 945 - 0.426455
tsr25 BF2877 tyrosine site-specific recombinasechromosome CDS3342142 915 - 0.546448
tsr26 BF4088 tyrosine site-specific recombinasechromosome CDS4811372 933 - 0.446945
ung BF3608 putative uracil-DNA glycosylasechromosome CDS4257634 663 + 0.457014
uvrA1 BF2634 UvrABC SOS-repair system protein excinuclease Achromosome CDS3064516 2829 - 0.44468
uvrA2 BF3159 UvrABC SOS-repair system protein excinuclease Achromosome CDS3697582 2778 + 0.518359
uvrB BF2642 UvrABC SOS-repair system protein Bchromosome CDS3073845 2034 + 0.443953
uvrC BF0111 putative excinuclease UvrC proteinchromosome CDS115384 1827 - 0.431308
xerC BF1738 putative tyrosine recombinasechromosome CDS2031620 885 + 0.540113
xerD BF4279 putative tyrosine recombinasechromosome CDS5077429 954 + 0.421384