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# Acinetobacter sp. ADP1, ADP1

>ACIAD3091 conserved hypothetical protein; putative enzyme
MLRLFDTHTHFDVPDFDADRILLAQQAKNAGVDALVLIGFVASRFDDLIA
TQNQLMNLDNAPMSYLAPGLHPFYIEQHLPVHLEQLEQILRQKTCVAIGE
IGLDTFLPQHKQPDIYQKQQQYFSAQLDLAVQYDKPVLLHIRKSHGDVIR
LIKQHHFKLGGIAHAFSGGIEEAKALIKLGFKLGVTGQITNPNAKKLYQV
IQTVGAEHLVIETDCPDMTPLCCQTSTEHRTRNTPVNLPYVLAGLAQVLA
MDSIQLAQKLWENSLSALRLNP
>ACIAD0957 transposase for IS1236, orf2
MDVNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDLKAVYWQHHARL
GAPSLVHDMHDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPT
APNLLDRQFTVNEPNKIWTTDITYIRTKQGWLYLCVMLDLFSRRIVGWQT
SHRIDRQLVCDAFHYAMARQGYPMGVMVHSDQGSQYCSRDFRALLLTNNC
VQSMSRRGNCWDNAVTESFFHTLKGHMVHGSVFATRKEANAVLFDYIEIY
YNRIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV
>ACIAD0674 putative MutT/nudix family protein
MKGMIKQGLTQQLQQRLRFAKRTQPAEAAVLIAITDEHDPKVLLTRRSTQ
LTNHAGEVSFPGGKRDIGDTSNIVVALREAQEETALNPFDVELIGDLPMQ
RARNGMRVKPIVGLIPPHVDLKPQPTEIDRIFFASLTELIDAPPTPYKVQ
YIKQTLYFPSLQVEDEVVWGLTARMLISLFNYGLGYQKEWPFLLNPPSFY
QRKF
>ACIAD2864 putative methyltransferase
MRFKFLRGKLNHPIKCVCDNLSMDNQIMSTELYSQILEVIALVPFGKVAT
YGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVSTYHLNQI
GENIQLNKLRDEGIVVLNGKINLKKYQWLVSQS
>ACIAD0352 conserved hypothetical protein
MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQL
LKIVKEWQPTLFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVD
ERLTTREARDELESYQEQGRAKKIAADSIAASLLIQSWYRAPQGVQP
>ACIAD0209 putative Rossmann-fold nucleotide-binding protein involved in DNA uptake (Smf)
MITILSSHHYHTIKVWYVLQHSLSGFKKLIHYFGDCETALQPQRLSDWQK
LGLHANHLKRLEEVHTLQGQQQFEKMLAQLQTHTDFIVTPDDPAYPSQLI
PYQDRPPILFGQGSIQSLIQPQIAVVGSRKPSPHGRQVAYDFSYFLSEKG
FYITSGLAHGIDEAAHQGSLVHHRAIAVVGTGLDLCYPSGNKALKQHIRD
QGGAIVSEFLPGTPPLQAHFPRRNRIVSGLSLGVLVVEATLKSGSLITAN
KAAEQGKVVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTH
WHSQSTASGEANADDSGKTDDADLPDDLLPLYQLLDWQGQDLDQLAQHYQ
GSTAELTAQLMELELLGVCIQQSGRYLRCRSPY
>ACIAD1135 putative NADH pyrophosphatase (NUDIX hydrolase family)(NudC)
MSELSLAYIFHNQQLLVNEKLELPKVETLASDLQFGSGDNVIARDLGADE
TIPEGWHLVSIRQLISSWSTEEFMRASRAVQLLEWRRNHKFCSHCGHETE
IHPTEYAMVCPACQYRQYPRVQPCVITVITRGDNEILLAKNANNKSNMYG
LIAGFVEVAETLEEAVQRETLEEVGLKLKNIRYLASQPWPFPSNLMLAFH
AEYESGDIKLQEEEISDAQFFKFDQLPEIPFKGSIAHAMIMHVIQKQPI
>ACIAD0495 putative ATP-dependent DNA helicase (PcrA)
MLHWRLSLLDDCRYLLMSFEQLMGELNPQQHRAATTQAQHCLVLAGAGCG
KTKTIIARAAHLIHRGTPADQIQILTFTRRAASEIVTRVEQHLGAPAKGL
RASTFHTFCMYLLRRNPQAFGLGQFTIIDRDDQMLMFRLLRGKDKNNVLP
KAAQLCDVYSYARNTQSKLSDALIKQLPEALEHKVQIAELMQSYEQRKQE
RHFLDYDDILAIVAVNLQNSPELVQWVTRFCKVMLVDEMQDTNPLQWGIL
QPLIEHVGLFCVGDDAQSIYGFRGADFENIHHFKERIPNAEVLTLEENYR
STQEILDISNWLLAHSPIEYHKQLKAHRGQGLKPQLNIFQNEFEEANWIA
QDLLARHQQGAHWHEHMILVRSGFSARYLEGALISCNIPYRFIGGVKLLE
SAHVKDVLSMLRVVINPQDDIAWMRFLTLWNGVGDVGASKLAHELIQLPD
IDARCERLERHDKVDPKAILILKQLDVLQQHVEASIGLALDALAEQLEQN
YKTQDWSRRVKDFDLVKQLGRKHVALSEFLEEYVLEPVSISEIERSGDQD
LVTIITIHSAKGAEQKVCYVPHVSPNAYPHARAQGDFDEVEEERRVLYVA
LTRAENELIITKQNYNTWAQDQYDEQGRKIESYFLNDLPQHLVDAHIHQT
VPRFPQKTQVRQKRFSFGIDLE
>ACIAD2799 hypothetical protein; putative conserved domain
MSMLELWMIKTGRMQQSIEDKSTSYAPLYWGKQLEPLIAEYYSLHTNSKV
RRVNAVLQHPDPDNHFMLANLDYAVVGSDEVQILECKSVGEHGARRWRDG
IPLYVLCQVQQDFIRRLWIMWHVKVMPMADLRWMVKRVWILLRSFIRMNQ
>ACIAD3414 hypothetical protein
MLVSNRKIKISAHFSFLLEKVPTTEVITMAKESNKLDAKTIKNLTADPEQ
DKKYSDGGGLYLLVKKNGSKYWRMNYRHPISKKQNTLTDVLTRLPAHKMK
EIEELLPHR
>ACIAD0850 hypothetical protein; putative signal peptide
MSKMNKKFRLIFQNLITAFILVSVTNSSFANIYIPISFFKKPDHSKTVKA
KVFKTEDFDATTLQLLNEGFVPIQSKKFDGHDSAKGYEYIVSNMEKRADT
LGASMVVFSDQPSANMYGYYTFLNPAPQNPQNQRSNDHFFGSNTSNGLTE
SAPVYNPQKKYQVSYFYKFDSITGIYPVDLSDADQSKTGYT
>ACIAD3064 putative DNA uptake protein and/or related DNA-binding protein
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSA
SHHSLSKPTQQSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYG
KFASVDDLQKVKGIGPKFIEKNRDRLAI
>ACIAD2941 conserved hypothetical protein; putative membrane protein
MPMHIHLSDLYANMQEQLEHAPTALDGQLAIELVDRLRPSDTKNTDEIYK
KFDVFVQSLLITPNAALTLQAYILRLINQYKQSGLYSDSGILSQDGFWNQ
LSKRMGAYVLPSIIDHKDLRSLIGQVFHQKSDKYWLDAIDDHRWEQLFQI
IGQSNGNIEYKRAIYAEMIKAITVLSYRISGIGLYPEFINAQPELTEYES
PFLVQNREIVDFIEKYKQQHYTGHEVAVIEPPDASQALVMFDQCRDVVLK
IRRATKRIGVSLSLTYLLSLLEQCLDRIELLLNIVVADQNLRHRALGELL
KDITEANYSEKSVRALLSTNSELVALQVTENASKTGEHYVSTDKKGFLGM
YKAAAGAGAIIAIMATLKTLAARFTLAPLMQAFVYSMNYSLGFVLIHILH
FTVATKQPAMTAAALAATVQQRRGSKNAQLAELAALIINIVRTQFIAILG
NISIAIPVAAFIAFLWQMNLHEPLMTNAKAAKTLHDLNPFTSLAVPHAAI
AGVCLFLSGLIAGYFDNMAVYRKVGPRLKMDSRLLKLMGQERLNKFADYI
ERNLGALAGNFLFGIMLGSMGTIGFILGLPLDIRHIAFASANFIQGLMTI
NGSPDIGLIIVSFMGVLLIGLTNLFVSFTLTIIVALRARRVRFEQWKPLA
KLVMTHFLTRPSDFFWPPKRPLEIDDQHPSIEKTKN
>ACIAD1791 transposase for IS1236, orf2
MDVNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDLKAVYWQHHARL
GAPSLVHDMHDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPT
APNLLDRQFTVNEPNKIWTTDITYIRTKQGWLYLCVMLDLFSRRIVGWQT
SHRIDRQLVCDAFHYAMARQGYPMGVMVHSDQGSQYCSRDFRALLLTNNC
VQSMSRRGNCWDNAVTESFFHTLKGHMVHGSVFATRKEANAVLFDYIEIY
YNRIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV
>ACIAD2185 putative replicative DNA helicase
MVMPESHIHNIPMEQCVLVALMTFALSYELIAQDLDEGCFYPERHKQIYN
AIVELANENQPYDVVMVEQRLKSKNLLHVLGGEQYLKIMLAEAPSSFHSM
EPYITQLKKLKAHRQVEWLGQRISSMAQDTTQPDVFAEAENILGQVDNQE
QSDQGMSFEAALDMALTEMIEKAEAKDKQQFTGVKFNLKHLDELLGTVQK
GHFCVVGGRPGSGKSTLAQMLALDTASSFGKGVLFISAEMDQSTLANRMI
SALGLIPYHNIHNAELYNGLMKDYADAKAAYQRLPIWIQPKQKPSLSEVR
SYARRAKRRYKELGCIIVDYLQLLRDPSKKDRFQEVSSISRELKSMAKEF
ECPVIALVQLNREAEKGKRPKASDIKESGQIEQDADQIILVNPLTDPEDS
TKPMGITELIVVKNRHGKRGAVRVLDYLETCRFRSVEEQAEP
>ACIAD3245 putative ATP-dependent RNA helicase
MKLSMSKNFADFSLHESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVS
SQTGSGKTAAFLLPTLHSLAGQDTFLPFKERMRAVTQPNILVISPTRELA
QQVSQDAIALVRHMKGVRIAAIMGGMPFAKQIQQLKGAQVVVATPGRLLD
LVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISELAANRKQTLMFSA
TFADRIIRLAECMMQDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLT
HWLSDESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRR
LRSIREGKAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTG
RAGRTGQAITLATYRERGKIRALEDYLEARLSVSEIEGLEPSPPPARSGR
DGGGRGRGGNGGGRRDGGRGGFGGGRRFEGESNFKRRDGGRDDRPKRSFD
DKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPKRSFGGEDRPRREFN
SDRPRREGGFEDHPKRDFGDRPARREGGFNDKPRFDSNDDNRGNRVDYKP
RREGSFGDRPKRDFGDRPAPRREGSFGDRPKRDFGDRPARREGGFGDRPQ
RSFGDDRPKRSFGGEDRPRRATQEEFFNRESGDRRRKNDR
>ACIAD2378 hypothetical protein
MRKTEVYQVRLDSQEKKQAFAVFKQLGITPAQAVRLFFKQVVLTKSIPFA
IENQNIDMEQLLKLRKIRAQTPVNTQHEALIEDTEFNMDDHEALFDELNA
LLGESDKAQ
>ACIAD2779 fragment of transposase's ORF2
MTENFFHTLKGHVVHGSVFTTRKEANAILFEYIEVYYNRIRRHSANDWLS
PEAFELKYFYNLEGSVVLDTV
>ACIAD1858 putative phage replication initiation factor
MLMDKYKKQPNPTVLSGGLKNKAVSTPINKMGVTKFDTQPQDADLPIFQH
SLYTIPRTHMILTNDGVKHVEYRMPAENEIAVIDWVNFTFGIETMGDKYW
QEDEYILDTHRYTAAIDSLEADLEHIFGFTTSSCRNSGLNFYQQSYVLGE
DFGFICIGGQRNTVLIMINGRGCNFAKSGWELRLYNFLVTKAKRPKLTRV
DIAHDDFEGKHISVDWGNMQDGLGGFQLGNRAPNIEHKGNWRRPNGKGRT
LCIGSRDSGKYLRLYEKGRAEGDPNDNWQRAEVEFKSIDRVLPFDMLLAP
SEFFIAAYPCFRDLAQHLQPERIETISKTAQINFQTAIENLKHQYGKYIN
IFKEVFEPEELINLISCSDPLAYPKRLDHVLITARRM
>ACIAD3237 conserved hypothetical protein; putative MutT/nudix family protein
MILNTITVAAAIILNEDRQVLVVRKHNTQAFMQVGGKLEADERAEQAMCR
EIQEEIGCSCEILSFVGRFETQAANEPDHQLIAYVYHVAIREIPHISAEI
AEMKWIQFDDEDTHLAPLTREIVLPWCKSLACTE
>ACIAD1100 putative methyltransferase
MKNQLRIIGGEWKRRILPFASIDGLRPTPDRVRETLFNWLMWDIQNSSVL
DVCTGSGALGFEALSRGAASVVMIEPDATQAKILKQNIQLLNAQNCELKV
ATAQQILPKLKQQFDVVFLDPPYSLDLWQTLSVLIDPLLKDRAFIYVEAD
RGLAQLQLPSSWQLLKSTQAGTVQAGLFQKS
>ACIAD1222 putative Nudix hydrolase
MVLFMTAWTPHVTVATVVQQNGRFLFVEEHSEGFVHTVFNQPAGHVEADE
TLVAAAIRETLEETGHHVEIDHLLGIYSYTPPMFPDRTYYRFCFLAQVIS
VEENAQLDSGIVDAVWMTMDELQESARARSPLVLKAVQDALSGKKYPLSL
IYEHPFSPSITSQLDA
>ACIAD2187 hypothetical protein
MCTPIKKPPLAVTRSGVLTTLSEVNMNTHNLTEFDEQYNFQDHEYERTAE
ERAEDRYGDAIDHYRETRNALEQALGVQKDFEQTSWSAAEAVEDLQRNHD
QYRLIQRFEDAVIKKMKAKGEL
>ACIAD2254 putative tellurium resistant protein (KlaA/kilA)
MARFNSLIPLDQIETDPKIVLSIKRNDLVPLLDDQYRLNHFADQLIQAQS
VLLNSIDAELNYQLSHVIGLLIEKLSQSDRQLKKRKFNRLQKWLGIDLEY
DQNQLHYFNALQSLIDEANTLSQRLQVEIQKSQARVQQLLGLREQMATYI
VAAKEFLNEYPEFVNHRHPLDNFQERLSKKINTLHTLQVSNDIAITQMQL
AQQLSFTLLDRFKEAQQVLIPAWQYHLKQSMQTASVSELQKLDRSRDNLL
NTLKQSLDQNKVS
>ACIAD3070 conserved hypothetical protein
MMRFPTLVFDIETLTDLKAGAHLYHLDLPEADLEQALIKLRRQESGMDFQ
RLALHEIVCISGLWIDEQGFKLFSFSQENLSEKEILTKFLSIFDKRHPTL
VSWNGSQFDLPVILFRAMYHGLSAPSLFDQGELDQQKRYNNYQNRYHHRH
IDLMDVMAMFNGRNFQKLDDVACVLGLPGKRGESGYHVPEYVRQAEWLKL
TSYCEGDVLNTWLIYLRWLLLKGQMSLDDHYHWIQTTIGYLHQQPQQNEF
LSVWQKTAQHTTFTSQYFPCTSQEEGSS
>ACIAD1336 hypothetical protein; putative protein kinase
MFVLQNLTLTTKARRYALGRRLYTFERQNQLYWLKLQCSRGESSTQRSFY
NELSFYQWAEQYLTHILPVQIIDKTQIEHSEPIEPYAIVLPHAEPVFHLP
ASELSLKEIYTTIDKMLGALAEFEGINCIHGDLKAEHFVKFNGSVCLIDF
EQAIYPSCHIALQEMTATPRLMAPELFHGSYKTIQSDLYAFGIILYEWLS
ETRLYAKGYRDWAYLHCQKFYPVLPERYQHLLPLFKILLAKQKEQRCATV
KQAKISFEQLKLSI
>ACIAD3596 putative ATPase
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGP
PGVGKTTIALLLAQAVDRPFVSLSALNTGVKELREIIAESGDLLTPVVFI
DEIHRFNKSQQDALLNAVEKGKITLIGATTENPSFEVNSALLSRCQVYTL
NVLDSAAIQNLIDRAIDSDSFLKQRHIHIEEYEALIQFAAGDARKALNLI
DLIASTFEPDQENIVTNAVTVKVAQQNIARYDKSGEQHYDIISAFIKSIR
GSDPDAALYWMARMIKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGEC
FRSVQAVGMPEARIILGQCAVYLATSPKSNSTYLAIDRALALAEKTANLP
VPLHLRNAPTKLMKQQGYGADYLYPHHYPEHFVLQEYLPPELKGTKLYEF
SRNKREVEGERLQQRRWQQDQQQ
>ACIAD0579 conserved hypothetical protein
MAWMRLLLMTSLAFGISACQSIIPKASGLSQSNWSAWSHSDYQRQDQVDV
QWRKQSFSFLLYQQQQGQVLELVALSLTGQQLFQVDYDGQQVLVKQRIEQ
MRLLPFEFVVRDILLATYPNFAEQQHTAIYTQPTVNGQNIYIKQQLALKI
SALEQHIELDNVQVPYQMTFSPIENTLQPN
>ACIAD3108 putative DNA polymerase III, delta subunit (probably ATP hydrolase) (HolA)
MKLDYLQALKRVDAARGAWIIHGQEPLLEQNLLDAFRKSWQTQEIERQRY
DIGSVSDWKNVFNGLNSLSLFSQQLAIEVHGNIKPDASGIKQLKSYLQHN
EHNLLLVVLPKQDASSLKSSFFQTVEANGVIAHLSAQYPQDRQRILAQEA
EKIGIQLDQDAWTWLMQHHEHNLLAAKNSLMRVSDTFPEHQLIQIEQLYA
CLQDQSRYTTYDLSDAMLRGNLAQSVKIFQYLIGAGEPHSLILWTLSKEM
RLLMQLFEQPQNALQLGIWKTKVSDYQQALRRLNPHHFLSWPTLLLRIDS
AIKGMSDENPEHLILQALAELCGTSLFAQTS
>ACIAD0212 hypothetical protein
MIGLCYTITLKLLRTSHLFKIGLLLGFTAVLLQIAVFLQPLLPKQYQIAP
VCETIAQTFDLSALQHHKAMSHADSHMQHMPNMLEKAKSASSHDHHDLNH
QCQYCTVYGHLILPPELDVQEILVRIQVRLLAFQQAFRHVYYALQRLFLL
PQGRAPPVFT
>ACIAD2359 conserved hypothetical protein; putative deoxyribonuclease
MFVDTHCHLTMLDLTPYQGNLDQALVEAREAGVSKFMSISVNLDDHIALA
EISARHDDVGYSVGVHPCEDAATMARATTEFLVELAQSDKVWALGETGLD
YYHSDEYVDEQKACFARHIAASKIVKKPVVVHTRSAKRDTIDIIRAEAST
HGILHCFTEDWETAKAALDCGYYISFSGIISFKNAQDLRDVAKQVPLERV
LIETDSPYLAPVPYRGKSNEPKYVPYVAQALSDLYGKPLEEIALITRQNF
DNLLAAK
>ACIAD1882 putative G:T/U mismatch-specific DNA glycosylase
MIDIESHPLEPFLPSNARLLMLGSFPPPKERWKMQFYYPNYQNDMWRIFG
YLFFDDKNYFLDLSNKNFNEALIHEFLLEKGIAIFDTAVQVKRLKGNASD
KFLEIVTATDLKQLLCKIPQCHTIMTTGDKATDTLMLSFSPETQKPQIGQ
IAHTNFAGRALDLYRMPSSSRAYPLALEKKAEAYAVLFKNLGFL
>ACIAD0379 putative DNA helicase
MSSIEKPKATYEQATAIDNARLGESFKVIAYAGTGKTTTLQMISDAMPER
RGMYLAFNKAIASEAQQKFHRHVDCRTFHSLAFRSVPRGVTDKLRLPRLS
PSFMAKDYRLEPITLRRLMGGRYEKYVLMPSRLASLVANTVSYFCSTNSQ
YPAPRHIQAPSWLHPDDLTQLQQHLYPAIERRWLESIDPQHQAGIGHDIY
LKLWALSEPNIPADYVLFDEAQDADPLMLGILLKQRNTQVIYVGDAHQQI
YAWRGAVNAMQQLPLPESRLTTSFRFGESIANVANYLLNGLDETIPLLGN
PDLNSKVVNKPHTKQRDAILCRTNARAMELLLAGLVHGDKVSLQADHNKL
NRFVDAASLLKQGKRVTDVPELAWFNSWHDVHEYCETNDGSDIKPLVKLV
DDHGTAPLKHALSKITPIEQADYVISTAHKAKGLEWNRVHLEDDYQFKIN
QLEHKISDEELRLLYVACTRAKVSLNIHHIYDLVQQLKLRAPQSLRTSVV
>ACIAD2632 putative chromosomal replication initiator, DnaA-type
MRQLQLDIEPQLDARISDFSGPGWGHVVDAVRQLHAGLMNRFYIYGGAGS
GKSHLLSAICDSYLEIGKSAIKVSLLELLDAPIEAITSLERYDLVALDDI
EAISGVPHWQKAVFHLINYNNEVGGQLVFSSRVAPIELRLELPDLQSRLT
QAVSVKLPNGSLFADRQALILSTMSRRGLQFDPQILDYLLLHGPHQASLL
LKTIAQLEKLLKGEKTKLSNATLRQIYALIDEYRQ
>ACIAD0820 hypothetical protein
MQPKFLMSPEVESIGVLGGEVRYKSKLLNMPFPPKKIQFAEFKIPAERFI
ALSAYKSYHTGTELRGCSVEAVYKFGSNKNYELLDHKGGNECSLEVQEVL
STGERVELKPLKYLRNINEWAGCEAQLQGL
>ACIAD2782 fragment of transposase's ORF1
MGYSTLDKSIREANPTGSSKRQLSPEQQRILDLEKEVKQLREANDILKKA
HVYFLTDHAKKSTR
>ACIAD0720 putative MutT/nudix family protein
MAFLDRYRVGAHAVIINPQGQILLLKATYGHLAWGLLGGAIDPQETIFEG
LQRECLEELGVDIENAILTGIYLHSDIDAHVSIFRCKLPREHKIQLSHEH
SEYAYFNLSDLAAIQRQRVEDSLGFNGNVIFRKF
>ACIAD2200 putative integrase/recombinase protein
MQKPVKRGNAWRIQVRYKNLRDTATRDTARECEQWAAIRLLEMKAEYDPQ
KSIERKAYFSFHALFQKYYDEVGCKKRGKSYIQQQLKIKTFKKYFGDLAE
KSIYDIEAIDVRNWRDKRLQEVAAGTVHRQMCLYTSVFNYAKNELFMLKE
NPFAQVIKPAKPPARNRLISQSEIETILEALNYKAGTTPKTPRQYVAWAF
LFAIETAMRKGEIIGITCNNIYPDYIHLPMTKNGDSRNVPLSTEARALLD
LLPHADRVKLIPHTSNSFRLCWQRAVGKTELHNLVHFHDTRHEAITRLVN
KRKLPVEILAKVTGHRDIRTLINTYYNPTASDIARMMNAS
>ACIAD1792 transposase for IS1236, orf1
MEIQEMAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIRE
ANPVGSSKRQLSPEQQRILELEKEVKQLREANDILKKAHVYFLTDHAKKS
TR
>ACIAD0958 transposase for IS1236, orf1
MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVG
SSKRQLSPEQQRILELEKEVKQLREANDILKKAHVYFLTDHAKKSTR
>ACIAD0134 fragment of transposase for insertion sequence
MFQMEKRFGAVSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGLLICTTPSP
LEYRT
>ACIAD2484 conserved hypothetical protein
MSQLRQERSRPVMLSKRACVFYLEKVRVVLKDDRIVYLTDNSQPVEYFYN
IPEKNTAFLLLGKGSSLTDAAARRLAESNVMVGFCGSGGSPLFSSLDLTF
LAPQSEYRPTEYMQIWMKAWLDDDARLLMAKILLLERIVLVSQSWKKNLD
LIQHGIYIDENALNTFKQDIDRSENQQELLAAEGRWAKALYKELAKGFNI
DFKRDEGKNSHDSLTDIANNYLDHGNYIAYGYAAVALNGMGISFALPILH
GKTRRGGLVFDLADLVKDAFVMPTAFICASKGLNQKEFRMQLIEICQDQD
LLDYMFSFITDICSKIK
>ACIAD2014 putative helicase
MKQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTAST
GIAATHMNGMTIHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLII
DEISMLHAKQLNLVNQVLKYFKESDEAFGGIQVIVAGDFFQLPPVGKNDE
RNRDKFCFMSDAWVEAKFRVCYLTEQHRQDDEILNQILNAIRAQNIQNEH
KHALLTSRQHNIGETFTRLYTHNMDVDNINFQHLNEIENESHQFNAVLDG
NDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLGEVIGFEE
DDEHGILPKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAIT
IHKSQGMTLEAAEINLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALEL
DALALKADKRFQELSQEAEDHFAEIDLADQHKAFIRHCGGTLNETEISRN
EKKLLKGAKQNYGSATLDETRALFEEGYEIQDIAVERGLTPATIINHLAR
LQKEQGLDISVAHPGEEVVEQIRKLYKRVQKSKRPENFNDDGSIKLKPIV
ELTSPRMGYDQVRLALLFIE
>ACIAD1249 transposase for IS1236, orf2
MNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDLKAVYWQHHARLGA
PSLVHDMHDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPTAP
NLLDRQFTVNEPNKIWTTDITYIRTKQGWLYLCVMLDLFSRRIVGWQTSH
RIDRQLVCDAFHYAMARQGYPMGVMVHSDQGSQYCSRDFRALLLTNNCVQ
SMSRRGNCWDNAVTESFFHTLKGHMVHGSVFATRKEANAVLFDYIEIYYN
RIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV
>ACIAD0248 putative DNA modification methylase (Adenine-specific methyltransferase)
MNSEASVYHKRRHAARTTDEYLFHQLVPYLGNKRRLLHLILEALEITGTL
NSKKKNPPIFADFFAGSGVVSRLARQNGYRVIANDWEPYSHALNHAILAC
VDDAPAFKELGGYQKAIDYLNRLPEVKGWVTHNLCPRNDDIYDPSRDRLF
FKRRNGMRIDAIRQQIATWQAQGAINDVEMSALLAPLLYSASFVSNTSGV
FKSFHQGWGGRTQTALERIESLLWLTPSRFCDVGDSKRPAAEMWCVDAQH
LATQMSSFEVDVAYLDPPYNQHAYSSNYHVLNALTLWDQVDLPSPDTKGY
KSGIDRAWRKERPSPYNSSKYAKDAYEKLLETINARYILTSYSTDGNIEP
KDLLTANLKRGKVTLLTQDVPRYRVSKQRQSERARVLEFIVITDTHAKSG
PPLRQLLGQLYHFAELGGVDTSGNSTQLALW
>ACIAD0320 transposase for IS1236, orf1
MEIQEMAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIRE
ANPVGSSKRQLSPEQQRILELEKEVKQLREANDILKKAHVYFLTDHAKKS
TR
>ACIAD1964 conserved hypothetical protein; putative protein kinase
MTKIIQCQTLDGRPVAFVDEVIGSGAMKDVYFSPDKSYVVCFFSKEKNHF
YQSHAELERQKDRLKEIVGNKWQGIFNSAGGDYWKNVFCWPDGLIEYNGL
LGITAPTYQKQFFFEHGSKNNDFLGIKGKEKEGKWFASANNQNRFLDEKE
KGNFANYLKICILIARAVRRMHAAGLAHSDLSYKNILIDPVTGSACVIDV
DGLVVPGKYPPDVVGTPDFIAPEVVKTNHLKKDDPQRNLPNIMTDRHALA
VLIYMYLLYRHPLRGGKVHDVNDPQRDENLAMGENALFIEHPTDTSNRVK
VSQVRPSALPWADPEKIPFTVTGPYLKELFLQSFVAGLHQPQQRPSANDW
ETALVKTVDLIQPCLNSDCGQKWYVFDNTIKPVCPFCGTAFKGKLPVLNL
YSARREGSFRPDNHRLMVWTGQSLYPWHVNNLIAPNERLTAEQTKRVGYF
VFHQNQWWLVNENLPDLMDVATKTTIPIGEKIELLDGKQILLSRQDGGRL
VVVQIVECI
>ACIAD0332 hypothetical protein
MPMRRVSIMIVSLIVVASLVFFSYQYIQKRKSQDSSQMFDLVMSEKMGQL
YDQAQDWSTPVQLNIHDKRLAGNYKKMSEFLLNYWIENINARNAYLRTLK
AAKWDTFLNVDRLELDKKQKYAETENMLAAVSEASEQYQVQYEKIHQAFL
TQAQSLSVEPEMRVLLEQKLGSNEKVGQDHAIFMIELKILDKAKQMFALL
KQYPWEKKDGMILFHENAQVRKFNGLYQDVLKLNAKIESIKKKNVAALED
DLKE
>ACIAD1132 conserved hypothetical protein
MPDMKPVQDIHAHHLGKWAENQALNILQANGFKLVIRNFHSRVGEIDLIV
AKADELIFVEVKARTLGSYAAANEVLLVSQQRKIIKTAQYFLNRYPDYQQ
FYCRFDVICFDFPHKIAKTVQQDFSKLRYDQQWIENAFTL
>ACIAD2781 fragment of transposase's ORF2
MGVPSLVHDMRDLGYRMSERTVGRKLKKLGLRSKIARKYKYTTDSNHRLP
TAPNLLDRQFTVTRPNKVWTTDITYIRTKEDWL
>ACIAD2257 putative DNA exonuclease X
MNVMNAIILDTETHTLNGKPIEIAYAPIEIHNGKMTLDKSQLFDQLYSVE
EPISYAAMAVHHILESDLQNQPLYTSFELPTSTQYIIGHNIDYDINAIAR
CGVDVRHIKAICTLALARKVWPESEAHNISALIYQISKGSPKARELLKGA
HRADADIILTANILMHIVHHLDISTIEELYNASEEARIPKIINFGKHKGT
AISDLPRDYIQWLLRQDDLDNYLKKALETSLV
>ACIAD2780 fragment of transposase's ORF2
MMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGRE
YCSRDFRVLLLTNNCLPSMSRRGLAQYTAHGIMR
>ACIAD0953 transposase for IS1236, orf1
MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVG
SSKRQLSPEQQRILELEKEVKQLREANDILKKAHVYFLTDHAKKSTR
>ACIAD0952 transposase for IS1236, orf2
MDVNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDLKAVYWQHHARL
GAPSLVHDMHDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPT
APNLLDRQFTVNEPNKIWTTDITYIRTKQGWLYLCVMLDLFSRRIVGWQT
SHRIDRQLVCDAFHYAMARQGYPMGVMVHSDQGSQYCSRDFRALLLTNNC
VQSMSRRGNCWDNAVTESFFHTLKGHMVHGSVFATRKEANAVLFDYIEIY
YNRIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV
>ACIAD1847 putative phage replication initiation factor
MLMDKYKKQPNPTVLSGGLKNKAVSTPINKMGVTKFDTQPQDADLPIFQH
SLYTIPRTHMILTNDGVKHVEYRMPAENEIAVIDWVNFTFGIETMGDKYW
QEDEYILDTHRYTAAIDSLEADLEHIFGFTTSSCRNSGLNFYQQSYVLGE
DFGFICIGGQRNTVLIMINGRGCNFAKSGWELRLYNFLVTKAKRPKLTRV
DIAHDDFEGKHISVDWGNMQDGLGGFQLGNRAPNIEHKGNWRRPNGKGRT
LCIGSRDSGKYLRLYEKGRAEGDPNDNWQRAEVEFKSIDRVLPFDMLLAP
SEFFIAAYPCFRDLAQHLQPERIETISKTAQINFQTAIENLKHQYGKYIN
IFKEVFEPEELINLISCSDPLAYPKRLDHVLITARRM
>ACIAD2728 fragment of umuC
MGCSNLQSETYALVMSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSS
NDGQRSPLDYEKTH
>ACIAD0321 transposase for IS1236, orf2
MDVNEVTVSSACKCLGVSTSGYYAWRKRQTNLAQKYNDLKAVYWQHHARL
GAPSLVHDMHDLGYSMSERTVGRMLKKLGLRSKIARKYKHTTDSNHRLPT
APNLLDRQFTVNEPNKIWTTDITYIRTKQGWLYLCVMLDLFSRRIVGWQT
SHRIDRQLVCDAFHYAMARQGYPMGVMVHSDQGSQYCSRDFRALLLTNNC
VQSMSRRGNCWDNAVTESFFHTLKGHMVHGSVFATRKEANAVLFDYIEIY
YNRIRRHSTNGWLSPEAFEQKYFKNLEGFVVHDTV
>ACIAD1250 transposase for IS1236, orf1
MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVG
SSKRQLSPEQQRILELEKEVKQLREANDILKKAHVYFLTDHAKKSTR
>ACIAD0344 ada, bifunctional protein [Includes: transcriptional regulator of DNA repair (AraC/Xyl family); O6-methylguanine-DNA methyltransferase]
MKNLSTTQFMTMAAVIDYLYQHQDKQPTLEQIAASVGLSSGYVQRQFQEW
VGISPKKFVQYLSLQHAKSLLQQQSSILDTALDSGLSGTGRLHDLFIQFE
GMTPGAYKQRGVSVCLNYSYETTPFGEIFVASTPKGICSIQFIQTTSEYE
QPLNELRQKFVAADFCHRSAPLHQQVSAWISGDLTQCLQQKLPLCLQGTP
FQLKVWEALLCIPAGQLRSYQQIAEQIGQPQAVRAVASAVAKNPIAYLIP
CHRVIRSTGAIGEYHWHRSRKLALLSCEMAKYGNQG
>ACIAD0345 alkB, DNA repair system specific for alkylated DNA
MTLDLFAPQPKTNLLPYDGDVEDYGCFISTAEAEQYFQYFLKHLAWRHDE
ARLYGKHFITPRQVAWYGDDHYRYAYSGIMRDSLPWDPQLLILKQQIEQT
LAERFNSCLANLYQEGTQGMAWHSDGDMSLAKQTTIASLSLGATRKFCFR
HLRTKEKIEMQLQSGQLIVMRGETQQHWQHAIMKSQKVIHPRINLTFRQF
LL
>ACIAD0275 aspP, adenosine diphosphate sugar pyrophosphatase (ADP-ribose pyrophosphatase)
MTILEQASYSHHDVEIEKRESLYQGFTRLEKVSFRHRLFNQQEYTPVIQR
ELITRKQAAGVLLYSHPQRKFALIEQFRIGAIEDTSSPWQLEIIAGVLDG
DESPETCIRRECLEESGCEIQAAQHLFSFYPSAGACSELFHLYTAQTTLP
EYGGVFGLAEEGENIKLHLFDYDQLTTLLSQGRLRNAPVIMALQWLAQQI
RQQDAT
>ACIAD3526 crc, catabolite repression control protein
MLQIHQLRSNLRMIPKDSYPSDVKILRVVSINVNGLRSSVTKGLLEWLEK
SEADVICMQESRITHAQWTDKFKPEGWYTHLFPAERAGYAGTAIYSRIPF
KSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGSSGDEAQAR
KDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCL
PHERAWLDHIYDELGYVDTFREVRPEAELYSWWSNRGQARAKNVGWRIDY
HACSPDWKTRTVNAWVYRDEWYSDHAPVIIDYKIS
>ACIAD0225 dinP, DNA polymerase IV, devoid of proofreading, damage-inducible protein P
MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVY
GLRSAMPMGQARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLS
LDEAYLDVTENLNNLPSATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKI
ASDWNKPNGLCVIKPHQVMQFIQNLPLKKIPGVGRVTQDKLQQLKLETLG
DLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQQISKETTFDQ
DLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF
KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASESQLTL
W
>ACIAD0001 dnaA, DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes
MLWTDCLTRLRQELSDNVFAMWIRPLVAEETTDSLRLYAPNPYWTRYIQE
HHLELISILVEQLSEGRIRQVEILVDSRPGAILSPAEQPATTTAALSSTP
VVPQRVKKEVVEPAATQSNKILNSKKRLLNPLFTFSLFVEGRSNQMAAET
CRKVLTQLGASQHNPLFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMT
AESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEASLVEFFY
TFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETR
IEILLKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAIARFKGS
QIDLDVVRESLKDVLAIRARTISVENIQRVVSEYFRIPLKELIGPKRTRI
YARPRQLAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVQSLKQEDP
IFNEDYKNLLRLLQS
>ACIAD2433 dnaB, replicative DNA helicase;chromosome replication, chain elongation
MSQANANFLDNSKVSANKTAESGQLKEFRTPPHNLAIEQAVLAALMTVAE
SFEQVNDLLKENDFYATRHKYIFRAIEKLAQENSPYDAVLVNDWLLKQNL
LDAIGGEEYLMQLMADSPSSFYNLETYASKIKEFSTLRSMIKVSSDILQN
AYDTKGRPVSEILDLAETSIFSLAEQHNNNKKDAGPKSISSVTADVISKL
DELSKLDGNITGLTTGFLELDNKTYGMQSGDMIIVAARPSMGKTTFAMNL
VESVLFNCNLPALVFSMEMPADSIAMRLISSYGKVHQGHLRSGKLDGDEW
SKVTGTILQLQEKHLYIDDSSALPPTELRARARRIAKQHGGKLGCIMIDY
LQLMKVPGMGDNRVGEIGEISRSLKALAKEMDCPVIALSQLNRSLENRPN
KRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESKEAGTAEIIIGKQRNG
PIGTVRLAFEGQYTRFSNLSPEYYSQYDDEE
>ACIAD2089 dnaE, DNA polymerase III, alpha chain
MQFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKF
YTSCLKKGIKPILGSVVRLNDPEHRITLLAMTNDGWKGLTEIVSRGHIEG
QQLSIPCVQKEWILEQHQDIIVLLGQHSDVGKMLCSSNPQKAEPLLQAWQ
EKFGNRVYIALTRTQRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDD
FDAHEARVCIADGYVLADHRRPRIYSSEQYFKTASEMEELFSDIPSAIEN
TYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEERLNHLY
PIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNG
VPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVD
FCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGL
ADRISKMVPTKPLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWEMAL
KLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADGTNRVAQYDKDDVEAA
GLVKFDFLGLRNLTVIEDAVQNINKRIQSEIPLDIANVPLDDKDAYLVFA
DANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIH
RMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR
RAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKS
HAAAYALVAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNAL
EVLPPSVNMSLYHFHASDERTIVYGLGAIKGVGEQAMQSVIDSRIKNGPY
TDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIERSSLMAQLPEAVQAA
EQARQNRETGIMDLFGEVEEVQRKPAKPVKPWSDEVRLKGEKDTLGLYLT
GHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVLDVANFPNRMVIT
LDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLS
KAFSLNEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIP
VMLTLEQPYATAEVHLGQNWKVAPLDELLIKLRDYFGKDAIYIEYQVKSK
AAKAAEPVRSAPLSPPPQDISMDEAMDLYQAEVSQYS
>ACIAD2899 dnaG, DNA primase
MAIPQHTIDQILDRTDLVELIGQRVKLKKTGRTYSGCCPFHQEKSPSFHV
YRDKGYYHCFGCQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNF
EQKKLSYKRNTQKPEPKPVVNTEKSAPSHHAAISESSEQIDGLQAPSYFD
DPFAQFDQSYMGFEDAPQEGNLYDLLENVAQFYEKQLPNSNKAQQYFKQR
GLSAETIQFWRLGYAPEDWQHLEKAFPYDIEGLKQVGLIRSSDSGRDFDL
LRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQLLYGL
YEGRKLKAKDWLMVEGYMDVIALQQYGVYGAVATLGTASNADHLNTLFKQ
NSRITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLI
RREGLEHFQRLLEQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTE
LLPKQGSFRYLLTQSFREKLGLGRKWTPQISHDASLSFNIQTKDEDFAVA
LLMQHPYLYIHFEALRAFIDPQQLLAQILAIIDRVFDELPDDQELATYYV
LGACNQFSHEIADIIERTDIQTLMNAPETADKHAKEYALGLKEKYLRQKL
KAPISLIESRNLRQQLNELSKQINLRLLS
>ACIAD0002 dnaN, DNA polymerase III, beta chain
MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLE
VELVASTTLAEGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRC
ILKSGNSRFVLGTLPAEDYPLLTTESSQGTQVQVTQRELKRLFEKTSFAM
AVQDVRFYLTGTLLEIDQNQLRAVTTDGHRLALCEVQASSTAMQAVQAIV
PRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKEQHPITVRFTT
KLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN
FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGD
DVSMSMTEANQSVLVQDAAHPDQTYVVMPMRV
>ACIAD1970 dnaX, DNA polymerase III, tau and gamma subunits (DNA elongation factor III)
MYQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGK
TTIARILAKCLNCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKV
EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK
FLFATTDPQKLPITVISRCLQFTLRPLAVDEITSHLTTILAKEQIEADKD
AIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYD
LILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPEL
SLKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEM
CVLRLLAFRPLSIDEVTVHASSQPSELQINQLPPAADSETDSSSRSELQH
TNNRIEPDLEGSVVISVISQEAESFEAEQVVNHTTDDCQTAKTRQNKDVS
SAVVEAEQENILVFNANSDDIVGIEQNKTAVVLAAQDMPFFPVEEERQIA
NHQHIALPAERVEQADTYQPEPHQVTQPISDSSSEESSLDALADDESTPL
IDLSIDTNEHKVQVTSAANDLEVMPQDILKLAEQELEGEWTLEKWEYWFR
TSQLSPAVQELAQYGLMSGNIDGICTFNIPQQYEGMLSQLQHALESEVKS
RWPNTQFTVKYGKVNEITPYIKQIERKEKAFQRAIDLLQQNPVVKDLLNT
FDGQLQNIQLK
>ACIAD2446 fis, DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replication
MIFGLTRMNSKSPIFTAQSDVALRIHVDRAVRHYFAQLQGEQPSQVYDMV
LAEMEKPLLSVVLEYTRGNQTRAAEILGLNRGTLRKKLKAHGLMSE
>ACIAD2652 gyrA, DNA gyrase, subunit A, type II topoisomerase
MSVSEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAM
HELGNDYNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLL
VDGQGNFGSVDGDSAAAMRYTEVRMTKLTHELLADLEKDTVDWVDNYDGS
ERIPDVLPTRIPNLLINGAAGIAVGMATNMAPHHLNEVIHACLAYADNPN
ISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDE
KTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMR
IAIDLKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIA
AFIRHRQEVVTRRTMFELRKARERGHILEGLTVALANIDDIIETIKTSAN
PAEARERLQAGEWAGGGVIALLEKAGSVSVRPDEIEGEDPARPFGLSEQV
YRLSPTQVAAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNL
LMGVIREELSLILQQYGDERRTQIVESRIDFCREDLIPEEQVVLTVSQTG
YAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVG
KVYRLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFLENHYVF
MATASGTVKRVELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLF
SNEGKAIRFAETDVRAMGRTAKGVRGMRVTLAAAVDSEDTELDHDELDDS
EESTDSSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKG
VIAIKTSERNGELVGAVSIDGTKELMLISDGGTLVRTRAAEVAMTGRNAQ
GVRLIRLSDAETLVGVVSIEAVEDDEFIEVVEEIATESEITEVDQPEIDS
ESSDSAATE
>ACIAD0004 gyrB, DNA gyrase, subunit B (type II topoisomerase)
MSSESQSASPTEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGL
HHMVFEVVDNAIDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHPEE
GVSAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIHR
AGQIHEQEYQHGDPQYPLKVVGETSTTGTTVRFWPSGDTFSQTIFNVDIL
ARRLRELSFLNAGVKIVLRDERVNFEHIYAYEGGLSEFVKYINEGKNHLN
DIFHFTADSDNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRA
ALTRGLNSYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTK
EKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARK
AREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRN
RKMQAILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDK
LRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPLYKL
KKGKQEQYIKDNDALETFLISNAIDDLALHISAEAPAITGEALAKVIDDY
KISQKSLQRLTQRYPATLLDGLLEVEPFKADLSHDRPYVEQWAEQLGQVI
AKLQPSLRPEVSLESFERESPTGETSIHCWPRITVYVHNLPHHYLLDAGL
LNSAEYARLLKNSKSWFKLLEEGAYLQKGERRIQVSNFHQVWQQILQDSR
RGMMIQRYKGLGEMNAEQLWETTMDPDNRHMLQVTIDDAIEADRMFSCLM
GDDVEPRRAFIEENALNADIDA
>ACIAD1204 hepA, RNA helicase
MWSSFEIKVEKLQQFAIGQRWLSDTETELGLGVLIDVDERSISILFPKSD
ETRVYARNNAPLSRIVFNVNDEVQDQEGHKWLVESIEDRHGVLRYNVLRT
SSDGETERKALNETRIGAHIQLSKPLDRLLASQVDYKEWYDLRIEALQMQ
AQMHRSPLRGLIGARVGLIPHQLYIAHEVGQRFAPRVLLADEVGLGKTIE
AGLIIHQQLKTGRAERILILVPDSLQYQWMIEMRRRFNLQFSLFDLTRTA
SIKEHDPDLNPFLTEQCIIASVDLMVDHDDLREQALEAGFDLLVVDEAHH
LMWNEEEGGNDRYDLVEELAQQTPGVLLLTATPEQLGVESHFARLRLLDP
QRFSSLERFLDEEEQYLQTAKIAEVLMSDEPLAAEHLTALQTLLGHSIED
VPEQRYRAIHELLDRHGTGRILFRNTREAIQGFPGRDCQPAALIAPENWS
MDGKLREQMWPEEGQLDGSWMENDPRVPWLMEILRKELKHNKVLLIARSG
PVVEALENVLRLHAGIRTAMFHEGMSLLERDQAAAYFAEESYGAQILLCS
EIGSEGRNFQFASDLILFDLPANPDVLEQRIGRLDRIGQENRIQIHVPYL
IGTAQERMFRWYNEALNIFSSISPTAQTLQENFIVDLKDCLLADLGQKFE
DLLEEVNVQRQALEAELQAGRDRLLEYNSCRPVVAQKIVQALEDYDDNTM
LPMFMKRFMSSTNIDFDEQSNGTVIIKPTDQMQVQGLTLDEDGMTATFYR
DQAQIREDAQYLTLEHPFIESVMEMINTQSFGSTNVALLKSNALKQGSIL
IEVWFKVDVVGPRSLNLPSSLPRQLVRVLLSETGQDLSEKIDPVILRPYL
HHLDGNSCRQVVKARRDVIEQRYSQALESAKEGLPVLKEQAKKYYSQKWQ
YEIDRLSYLKQFNPSIRQDEIDRLTKLQKEGVDLLEDISLTPSAIQVMVV
VKP
>ACIAD3040 himA, integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication
MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGF
GNFELRDKRERPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
>ACIAD2346 himD, integration host factor (IHF),beta subunit, site specific recombination
MTTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEI
RGFGSFALHHRDPRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNEAIN
D
>ACIAD2361 holB, DNA polymerase III, delta prime subunit
MVSLNKQENLVYPWQENVWTTLTRRFPQVGHGLLFYGKKGCGKDAFTQHF
LAWVLCTHKKPEGACGECVSCQWLKSDTHPNYVHITTDEDNKKQNAKIKI
EKIRELLPFVQQTVDGWRVIVIEPAEALNIASSNALLKTLEEPGERILIV
LLADHYLKLPATIRSRLQHFSLDRVSTVQAHDYLQQHLDNLPSEQAQLLL
NLTNNMPLEAIEVAKSDWFAKREAFLMDWIKLVHQKNMPLFYSSKWQKEL
VFSEWLTLFEYLLCDLICVKLDQVCKNTDLDLKDLASNYTLEVLFDFYAD
LQHAKQLIEQNVQSNLVMDQLFIKLMNVDGG
>ACIAD0252 holC, DNA polymerase III, chi subunit
MTKISFYLFETSQERQVESACRLCRKLVKQQQKLWWFCPDLELQKQLDER
LWTFDRESFITHGIDQPHAFVCISSHLPTSKEWIVFNFNNQALEQMSEFS
HIIEIIENTESAKQIGREKFKLYRRLGVEPRTFKL
>ACIAD2102 hrpA, ATP-dependent helicase
MHSGLDVDQLVMVRDRHRLNRLGKGKDKNPEQYQALFEKSNAQVKNRLAR
FPKIKLNQDLPVTQYADRLIEAIQKHQVIIVAGETGSGKTTQLPQIAMLA
GRGLTGMIGHTQPRRLAARSVSQRIAEEVGEKLGESISFKVRFNEQGSSD
SIVRLMTDGILLAELGHDRYLNKYDTIIIDEAHERSLNIDFIMGYLKQIL
IKRPDLKVIVTSATLDVNRFSAYFNDAPIFEVEGRSFPVEVRYRPISEMT
IGGSDDDEFDDFEENLPRAVVQAVEECFLDAEEKGHPEHADILIFSSTEQ
EIRELQETLQKYGPKHTEILPLYARLGLGEQQRIFSPSGKGRRIIISTNV
AETALTVPNIRYVIDSGFARISRYNYRSRVQRLPIEAISQAAANQRKGRC
GRIAPGVCIRLYSEEDFLSRPEFTEPEIKRTNLASVILQMQSLGLGSVEQ
FDFIEPPDHRLVNDGRKLLIELGALSEQKADLTKVGQMMSRMPIDPRLAR
MIVGGSHFGVLNEILIVVSALAIQDPRERPADKQMQADQKHALFKEADSD
FLFYLKLWDTLQHNPDVATENKRRQFARQHFLSWLRLREWKQTHSQLLDL
AKSLNLSFNEKKASYENLHRALLTGLLSFIANKTDERNIYMAVRQQKAKV
FPASTLHKSNTPWVMAFEMVETSQVYLRTLAKIDPEWILLAARDLLKYHY
YEPHWSKKSGIVNAYAQISLFGLIIEPKRLINFEKVDHPAAREIFLRDAL
TTGHLGTMPPFLKHNLLKLEEVERVEDKLRRRDLVVDEETIYQFYAQRVP
TEIASRSSFEDWRATIEPKHPRYLFVEDDALWQSDRPTTQQFPDYLQNGQ
LRLATTYRFDPSHDQDGATVKIPVQALAQVDENLWSWGIPGWRLDLIEAL
LKSLPKDKRRNLVPIPDTARKLMQSVDASHLREHIFKFLAFALRGEQISE
KDFAFNRIDAYLVPFIWVTNEKGQVIEKGRDLDELKARCRTETHRPVKQM
KGEFKTFPDHFVFEASQKVTGVVVKQYQALVPSKNFADLEQKDESGVVIQ
TFNDQDEAIRQHREGVIRLIHLQLGDLSRQLKKQISKPLFLAYSPLGDKS
KLEQMLIYATLQLSVNTLPVNEQEFKQLLQHVKQEFLTHGQQALQIISDI
FIQWQDIRRQLLMLDADIFARSIDDIEDQLDLMNLSDFVYTRGSEVWLEF
PRYLKALLMRLERLPNNLPRDEAAILEVDPWMDKLFKFKNKTELKSLYFM
VEELRISLFSQPMKTKMPVSAARLQKLWQGLGIH
>ACIAD1408 hupB, DNA-binding protein HU-beta
MNKSELIDAIAEKGGLSKTDAGKALDATIASVTEALKKGDTVTLVGFGTF
SVKDRAARTGRNPKTGEELQIKATKVPSFKAGKGLKDSVA
>ACIAD0848 ligA, DNA ligase
MMQPADIVAQMRQLIQLIAKHNHAYYVMDQPSITDNEYDQLFHQLKALEA
EYPELTQADTPTNRVGGQALSKFETVTHAVPMLSLGNVFNQEDLFAFARR
IEERLPNQQIQYDVELKLDGLAISLWYENGVLVRGVTRGDGETGEDITQN
VKTIRNLPKHLQHHSVETPRFLEVRGEVLMPKQGFERLNAANEAKGEKTF
ANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCEPHHGLGSMHESLQWL
TQLGFEIAERQFLCSSIQEVQQCYEQIQQERPDLAVEIDGMVIKVDDLKQ
QQQLGFLSREPRWATAYKFPAEVAMTTVENIDWQVGRTGTLTPVARLQPV
FVGGVTVSNVTLHNIGEIHRLDVRVGDRVSVYRSGDVIPKVEKVWPEFRP
ELAEIVQLPEQCPVCSSPVVMPEGEALARCSGGLYCAAQRIEAIRHFVSR
KALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHREQLLTIEKMGEKSVQ
NLMDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLDALKQADIE
ALKKTPDVGDITAEWIYDFFLAEHNIEVLDRLLAAGIHWDAPLAPTRQPL
NGESWVVTGTLETMGRDEATQRLQALGARVSGSVSSKTKCVVAGEKAGSK
LDKAEKLQIRVMNEQEFLAFLAQYSA
>ACIAD1395 mfd, transcription-repair coupling protein
MHVKIIDMSFIFYTSSMFQQQISELKLKQLKAGEKRWIGSLFGSSGALLF
KEIVQQHTTLLVIVTQNSQHLAQLESELEFYGVKPTIFPDWEILPYDRLS
PHQDIVSERLAILSNMPQTGVLLISASTLAQRVAPIGWVLGEHFDIQVGQ
KLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDL
FDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPLKEGRSIFRERYAEAF
PTANPKKNPIYQDVLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNC
IVITNDALDESLTSCWKDVVQRYESRRHNIDQPILSPEHLFLMPNMVLEQ
LKQFPRIHVSSEIIAERVGGINLPVSQPVKLAVDPKKEHPFEVVTKYINE
VNHPVLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQYAIAITNA
PLDRGLVLSSQLAVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSI
GAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLI
SRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKP
GFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGD
VGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIR
IEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVD
EEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATP
PARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENI
RNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPN
ANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKR
LDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEML
EKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQRLLFYKR
ISNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKID
LNSQGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQEYD
KRIQFAHALLSKLIQELHSYS
>ACIAD2375 mutL, enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNA
MHNDAVQIHRIHTLDPALANQIAAGEVIERPASVVKELLENAIDAGATEL
IIRVAQGGSTLIEIIDNGLGIHPDDLPLAVMRHATSKIKTPEDLHAIVSL
GFRGEALASIAAVSRLSLMSSQTDDGVGYQVEVNGTAFDHQEIQAIALRK
GTHIRVQDLFFNVPARRKFLKKPSTEFGHIEEIVRRLALTHFEIRFVLEH
NDQIKLNLPIADSGVLRFQRVQQLLGQQFTQNAYWLDTESISMRLSGWLG
HPSDARSQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQYSAYLLFL
EVDPDQVDVNVHPTKHEIRFLNQREVHEFVRHHAKETLAQFQTASADLAQ
AMKSNEPKDILRDQPKHQEQFSLHRTDATENPVVNRAEDTQIEYRKELST
DLLTEFNASRPKTVEYSTRMPVRDPVQLNNALKTYLAPLREESGSAITAS
SDVVSGVDEFPLGVAIAQLHGIYILAQNTEGLIIVDMHAAHERILLQQMK
AAWDKPEFWISQQLLIPKIISITRMQASRIEDLKSQLLRLGLDIDQYGDE
QAIVRGVPAILQKANFEKLIPELLHDLDPNDEAQALLQKRDTILAGMACH
GAVRAHRMLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLHQLDKLFA
RGE
>ACIAD0707 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETTKTSLLPLLNQRVKSVQVRDSRLRWPIPEDISRLAGQRLTS
LKRRSKYILAEFETDQMLWHLGMSGSFRVATAADELRKHDHLILTFDDGT
ELRYHDPRRFGCILWLNEESQSKLLNPLGPEPLSEDFNADYLYQKLKSKQ
VGIKIALMDNHVVVGVGNIYATESLFNLGIHPAQPASSLSKPQILALVQE
IKRILKFAIELGGSTLRDYTNAMGENGYFQQTLLAYGRAGEMCVNCETPL
ENLKLGQRASVFCPQCQPLKRK
>ACIAD1500 mutS, methyl-directed mismatch repair, recognize exocyclic adducts of guanosine
MNSTETMADLSSYTPMMQQYFKVKLEHQHALLFYRMGDFYELFFDDARKA
AKLLGITLTHRGKANGEPIPMAGVPYHAAEGYLARLVRAGQTVAICEQVG
EGENAGSRCKAPMERKVVRIITPGTITDDALLGSYQSSNLVALCIQQNKI
GIALLDLSASIFKVQQHEFKTEQLYIELARLMPSEIVVDEDLVDQNILEQ
IKKQIECSITKRPNVDFNLNNAQKTLCDQFGVTTLSGFGIDHLPLAKAAA
AALIHYAKETQKTALPHIRSIQLEQSTDFIALDPITRRNLEIIDPLFEHG
TSLFNLINDCQTAMGGRLLSRILMQPIRDTAILDARLDATEQLLIGYHES
PVRLVLKEIGDIERVLSRVALGTARPRDLVQLRQACAQIPFLRHALLPAI
QTKSSKLLNELDHELGDFKDLHQLLLSAIVENPPVLLRDGNVIAEGYDAE
LDELRKIRDHAGQFLVDLEIKERESSGIPTLKIGYNRVSGYYIELTRAQA
EQAPAYYIRRQTLKNAERYITPELKSFEDKVLSSESRALAREKLLFESLL
ETLKKNIANLQMMSSAIAQIDVLANFAHQARLQNWNRPDFSPEIGIKIHD
GRHPVVEALSKTPYTPNDTFLDSQHRMAIITGPNMGGKSTFMRQTALISL
LAYCGSYVPAKSAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILH
HATHQSLVLMDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFEL
TELGSESAIDNYHVTAKEMNGNLILLHKVQHGPASQSHGLQVAKLAGIPA
SVIKEAQKRLKILEKQQQQYFQTAVQNDLFAIPELPQIDETKIEIKKTSP
VLDHLKQLDVDSLTPRQALEALYQLKDQLEH
>ACIAD3606 mutY, A/G specific adenine glycosylase
MSEFSFSDALLDWFDQHGRHDLPWQVADDPYKVWVSEIMLQQTQVKTVLQ
YFDRFMARFPTVADLGTATWEDVAPYWAGLGYYARARNLHKAAAIVKQNG
QFPETLEQWIALPGIGRSTAGALMSLGLRQYGVIMDGNVKRVLSRFFAIE
DDLSKPIHERELWALAENLCPVERNHDYTQAIMDLGATICTPKKPLCLYC
PMQQHCKAHQQGIENELPFKKAKKPVPVRTADVILIRSNAQWLWQQRDSQ
GLWGGLWCLPILDNSAAIQAMIQQFDLKQIAETLQISHSFTHFTWLLNVQ
TFHVEQDQMEYIMTELRGQWLTPLEATERGIPTAMKKLIAAVDS
>ACIAD1108 nth, endonuclease III DNA glycosylase/apyrimidinic (AP) lyase
MTKKQIRTFFERLRAQRPYPQTELKYSSPFELLIAVMLSAQATDVSVNKA
TDKLYPVANTAAQIYALGVEGLKQYIKTIGLYNAKAENVIKTCQILLEKH
QGEVPQTRAELEALPGVGRKTANVVLNTAFGQPTMAVDTHIFRVGNRTGL
AIGKNVLEVEHRLIKVIPKEFIIDAHHWLILHGRYCCIARKPKCAECVVS
DVCNWPDRFEYGATRKMAVKE
>ACIAD0455 nudH, (di)nucleoside polyphosphate hydrolase (Ap5A pyrophosphatase)
MIDSEGFRPNVGIILANDNGQVLWAKRIGHNAWQFPQGGIHFGETPEQAL
YRELREEVGLLPEHVQIIAQTKGWLRYRLPHRYIRPDSDPVCIGQKQKWF
LLKLTASTRHIQLNLSDPPEFDEWQWVSYWYPLGQVVNFKRDVYRKAMME
LCMLLPQQQTFEKSSL
>ACIAD0692 ogt, methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase)
MWNIMEQLFYRYIDSPVGKLKLVASDTALVAILWENENPKRIQLANLTQA
FQHPVLLQTKLQLEEYFLGKRQYFEISLDLQGTPFQRQVWTALQTIPYGK
TCSYKQIAQMVGREKAMRAVGAANGKNPISIIVPCHRVIGAAGTLVGFAG
GIDKKQKLLALESSFTI
>ACIAD0234 parC, DNA topoisomerase IV, subunit A
MTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIV
YAMSELGLKSTGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYR
YPLVEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTVDWQDN
FDGSLKEPINLPARVPNILLNGTMGIAVGMATDIPPHNLREVVKGTIALI
RNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRGSYRARAVYH
IDKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHRNPTR
LVIVLRSNRVDAAAVMSHLFATTDLETSYRVNLNMIGSDGRPQVKSIRRI
LLEWIEIRKTTVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIKIIREE
DQPKPVLMQHFNIDEIQAEAILELKLRHLAKLEEMEIRREQEELEARAAV
IREQLGNPESLKNLIINELKEDAKKFGDDRRSPIVQREEAVQIREQDLLP
AETVTVVLSEAGWIRSAKGEVDAENLNYRAGDQYQSHAIGKSNQRVYVLD
ETGRSYALSIGNLPSARGLGEPLSSKLSPANGVSFIQVYINDEESELIAV
SDAGYGFKTQTKQLDTNAKAGKAFLSVPEGAKALPLLTIRDATHLAMLSS
SGRLLIVDLSELPILNKGKGNKLIQLDDKDQILSMTLLSLNEIIQVVAGQ
QHLKIKGDDLQKYMGKRATKGQLLPRGYQKANRLLIQR
>ACIAD3544 parE, topoisomerase IV subunit B
MSQYTAQSLEVLSGLDPVRRRPGMYTDTTRPNHLAQEVIDNAVDEALAGH
ANKIRVTVYQDGSLAVEDNGRGMPVDIHPEYGQSGIEIILTKLHAGGKFS
TDNYQFSGGLHGVGISVVNALSSRVEVEVQRQGNLYKMAFEHGEPVAPLE
VLAGKAPKRASGTTVHFWPEAKYFDSPKFALKALKHNLKAKAVLAAGLQI
IYVDEINNETIEWQFENGLVDYLMDELEDRDILPNPAFLSSGQVERASCE
FAICWNVEGGEQIQESYVNLIPTAQGGTHVNGLRSGVTEALREFCELRNL
LPRNLKLSAEDVWDGVNFILSLKFQEPQFSGQTKERLSSREASGVVLNIA
KDAFALWLNQNSEIAMQLAEMAISKAGRRLKAAKKVERKKIVSGPALPGK
LADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILNTWEV
SSDEVLASQEVHDIAIAIGVDPGSDDLSELRYGKICILADADSDGLHIAT
LLCALFVKHFPALVEEGHLYVAMPPLFRIDAGKDVFYALDDEELDAILSK
LKTKNPQITRFKGLGEMNASQLRETTMDPDTRRLVQLDLDDAHMTAGLLD
KLLAKKRSADRKHWLEQKGNLADISV
>ACIAD1182 phrB, deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
MNQLIWFRNDLRLNDHAALWHATQAGSTIAFVALSPLQWQQHDDAIIKID
FYMRQLTQLKQELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYAN
IETGINEIERDHAVQEALSKIGKNLILFHDKTLFPLGSIRNKSQAPYQVF
TPFKKTCYERLNIDIPKCFPYPHKQKQQPEIAKKEAAIPSLKQLGYSQID
QHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQDGTSHISAYLTI
GILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPKL
SRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHN
RVRMICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTD
ASPYFRIFNPVTQSQKFDPEGVFLKKWIPELKHLDSKHIHDPYAYQHKTE
LNYPKPIIDLKATRKNAIEVFKKSSSL
>ACIAD3030 polA, DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease
MPPFVLVDGSYFLFRAFHALPPLTTSTGLQTNAIRGAISAIQKLMRRTQP
THMAVIFDTPEPTFRHELSPIYKGDRPSMPDELAQQIPYLHALIKALGIP
LYMLPGAEADDVIGTLAKRAEKEGHQVLISTGDKDMAQLVTEKVTLEDSF
KDKPMDIQGVFDKFGVWPNQIIDYLTLMGDASDGIMGVPGIGAKTAAKLL
TEYGSIGGILENVDQIKGKVGQNIKDNADGIVIDHQLASIVCDLDLALTW
DDLQLRDPHVETLRNLYTELEFRNQLQSLDHPHNPVSQTYKQTAQQMDKV
EVAPQIETEDQASLTSEDDQLGTANYHTVLTQEAWDALLKRFQSEKRFAI
DTETTSLDYRVAEMVGFSVAFDAQDAYYVPLTHDYDNAPEQLNREQILAQ
LKPILEDETVHKIGHHLKYDAHIFANHSVELKGWYFDTMLASYVINSVAT
RHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV
TYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQ
LSVEFTETILGLENQAIELAGESFNVSSPKQVGEILFDKMGLKGGKKTAT
GQHSTSESILEKVEHPIAEVILEHRTLSKLKNTYTDRLVEQSHNETHRVH
TSYHQALTATGRLSSSDPNLQNIPIRGEIGRQIRKAFIAPEGRILLAADY
SQIELRLMAHFSQDEALLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQ
AKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFHRYPGIYEYMQRTR
QVALEQGFVETILGRRLYTPDIDARNMMVRKGAERAAINAPLQGSAADII
KLAMIEVDKMLPKDQAKLLLQVHDELVFEVDADLADELAPKLAETMQSVV
NISVPLLVEVGQGLNWEEAH
>ACIAD0409 priA, primosomal protein N' (= factor Y) directs replication fork assembly at D-loops, ATP-dependent.
MPLTPPQPSTEIYRVRVAVPVHLYDTFDYSVSQQQYEQAQAGARVLVSFG
RQSLIGVITEKLAPDLPIDPRFQLKTIRELIDQAPILDTKVLTLLTWSAH
YYQFPIGEVIQTALPSLLRQGKSQDVLTYIWKITAHPEAESKLKRSQKQY
DAYQILKLHPTGTTETILNLSGVETATLRALAKKELVACTQEIQDFTPMP
VQLAQMPLTPNPDQHNAIQRVLKSLHHYQAFLLDGLTGSGKTEVYLQIMH
EVLKQGKQVLVLVPEIGLTPQTISRFKSRFHCDVALLHSGLNDSKRLQAW
QQAKMGKASIILGTRSAIYTPLPRLGLIILDEEHDLSYKQQEGFRYHARD
VALYRGYLEQCPVILGSATPSIDSYHLVEQNKLELLQLNQRAGVALLPKM
HLIDLKVAKKNEGLSQILIDQIQHTLDRQEQVLIFLNRRGYAPVLVCESC
GWQANCPNCDAHFTLHTQPYGYLHCHHCGTIHRLPETCPECHHHTLKTLG
MGTAKVEEHLKTLFPEHDVIRVDRDSTSRVGSWQKIYDRIQHNKPMILLG
TQMLAKGHHFPYVTLVAILDIDAGLLSVDVRAPERTAQLIVQVAGRAGRG
EHKGHVYMQTLRPDHPMLTTLIEKDYRAVAKDMLEERKAARLPPYRYSVL
IRCESRDRDYSQAFLQEIAQMLQHQAGDSIEIWGPIPAPMERKAGRYRAH
MVILAQDRARLHFFLRPWWAEVIQLPRQHQLRLSIDVDPQEFN
>ACIAD3126 radC, DNA repair protein, associated with replication forks
MSFSNQNYNVHTFIIMNQSIKFWPEQERPRERLLHSGPESLSDAELLAIF
LRTGSKQHSAVELARLMIQHFGGLNPVFDASLQELSHFHGIGTTKYAHLM
AVKELGRRYLNHYFHQDALNLNSSRLVLDYLRYELLGEKQEVFAVLCLDS
ELRKLNFKKLFYGSLNACNISINHTLRYALQQHACHIVIAHNHPFGKAEP
SAADLDLTHQLYQACQLVEIKLLDHFIIAKDGTFSFAERALLSQKKCMHT
DIDKPDLTGEDHHKKSCDRSP
>ACIAD1385 recA, DNA strand exchange and recombination protein with protease and nuclease activity.
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIAL
GIGGLPKGRIVEIYGPESSGKTTMTLQAIAQCQKAGGTCAFIDAEHALDP
QYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTP
KAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGV
MFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSETKVKVVKNKM
APPFREAIFQILYGKGVNQLGELVDLAVQQNIVQKAGAWYSYQGNKIGQG
KNNVIRYLEENPQISTEIEAVIREQLLTKASDQTAAHDETEEEPDLLES
>ACIAD0398 recB, exonuclease V, beta chain
MTKSKVSYQPITEIEFSGLHLIEASAGTGKTYTLSSLMVRIFLEKYLPQQ
VIATTFTRAAAAELKARIRSRLHQTLTYLQECRGLTESEILQKAQQETDP
LLEYLLQQFSLRIGYACERLKLVLDQLDELFVGTLDSFSQKLLREFAFES
GKIERADITDDAKAYTRQLIHDVLRAWIQAQPQALIDGLYNMGALKSVDA
FVGLVESSLNFSSAKFQQQQSPEIDLYALEQVAALACQIDVTPLSSYYQL
DGEYYSFIHGSSFRNHGFHALFVQHIPCLLKALQQDSVLSIFDPAFKASR
EAADKFIEKLEQEKIFKKCPADVSDGFYQHAVVAQLKQVIQTLQHYQAQF
EQLDHALKAYLCIEVKQRLPQVLQEKGETTFSQQISTLAEALKGEQGQRF
AIFVQARYPLILVDEFQDTNQDQDDMLASIWRHPQRYQKGCMIMVGDRKQ
AIYGFRGGDMLTFLNAYQDILHKQGREYKLSQNHRSVKPLVEVVDALFQR
QPNFGEQVIYDPIQAGSRAHPALMDRAQVNTAPLRWIMLQDKASEAEQVA
WKIRALLNQASSGELYLKDGSVHHSIIADDIAVLSKNHKGLDDVQAALEY
LNIKVNRPSRRSVFDHVVAHDVGAFLTAILFPYDEAKVKRALLSRLMGFD
LERLYQLEQSPVGLSDYMNQLDGLREIWLHQGFLPAWQRGLNIFQVWQNL
GAKHSRENERAVVNLRHLSELLSKHSEQYQGAQNLYHWYLKQLRSPSERE
WELERKLSSDAGVQLMTIHQSKGLEFKIVFLLGADKPLRDQNKDLNFSRA
EILDESTGQMQTKRVIAIADKTQLTPEAIIQHTERATAEQNRIWYVALTR
ASHRVYAMLHDPQQKSKDALAFWKNQDSPFLHEYSIEEALLMQCPEPLTV
HETPQKILIYAAPLPQQRFYPRGKTSFSYLAQHLKPRVSYADTLVSMQTR
PEQAEDERDTTTSIQYSQAAIQPIAWIKQNFPKGTLAGNFLHEIFEHINF
NQTEEWITEIRRRFKNDYGSLWEMLYPVYIDAFPELNGDENRLYQWLADW
LDDVLKTPLHQDFQLKQLQSGQFLSECPFYLALSDRVLAMRRIQQLFIEY
HIEMPEFLDAYSARYLNGSIDLMYFDGQRFHIADYKSNFLGTDQTHYDGL
AIRENMTHSSYWLQAALYLVALHRYLKVKLEHYEIAEHLGGATYLYLRGM
NGHTGQGYYYWKPEDEFILRLDAILGYATEDKIG
>ACIAD0397 recC, exonuclease V, gamma chain
MAIHVIQSQRIDVLLQGVWQSVHQPTRQPFDVLATQHFIVPSPAVEQWLT
EKLSELQGITANYLFHQRIRGFQWYAYQQVLSEHKDDVRKANIPRLILKW
RVYQALYDFIQPDQILITQDHPAYSIIARIYDSADRLENGFEKQLKKQKM
LYWVAEQVSQLFSNYMIYRGHCQKNCAGNCGCASNWLSAWGENRELDIEQ
LIVQGNKEISAFQLQQAQELEAWQRWLWHRYFHQDFLDIQNIDDLFWQVL
EQPQTRDIALKRLPKQIVMFTLLDLPPSQLQFLRRLGQYLDVLILHYNPS
QEYWADSVDPLWKQRYDVRVKQRFIEKNPAATDVDIAQFFEQFTLHFNAE
ARESRHPLLTRLGKQARDHFSLLANLSTGEEGRWVDAFVDDFPDTLLGQV
QSDILNLAEPQAGRYTLEPSDESIRFHVCHSSLRQLEVLRDQLIHWLSQN
DDASVRRPNDILVVVPNIKEIEPLIRSVFPATPSDDGVFLPIKISGVVQL
DVMNAWRAVLGRMTLLQGRLSYDDFADWLSLPATQVCYDLEDSQIKRMLA
LLAGAGFKRGFDIHHLQQSLSAEDHDDRYSFKFALDRLALGIAIPEHTLF
QGVLSYSGVTPDDFELIGKLIQIYQDIDARRNWVLAHEQGTQHSVEDWLK
ILMQDVIEFEQAGVVALKTAREIIKKQERMVTLASFYADKDAHTLRQIAL
PLPYILDEIQRTLEHQSAQAEPTGQITFSQIGQIRPLPYRLVVMLNLDTG
RFPNRDSHIPFDLMDALRQQLGDRSRLEDDQGAFLDAVLLAQQALWLFYN
GFDLNDGEVREPSSILQEFRDHLALIVAPAEQIAKHEDSNLTIQMQQQQF
KLLDIPNQLWPLYCVHPLQPFDPLGFGNLPVAKRYQDQWYQVAQSIQEAS
AILQPWVNMVYTQPQQELRVLDSQQWMADVTFPARLYLKNLGVENLAMTT
LLDQNEPLFLDGLGRYAIRNFLQKQEQTTTPDTLLDQLPVGKIKHSAWQQ
SLAEQERLLERLHHYTTQPTATTHHVWRVSKTLHLNIIMPEHDVQDWVSL
EASSARAKRIAKVWLEYLLWLSYLNEGDAGQRRRRIVVFSDQTVICEGVS
SIQARDYLTQWLKMWQVASTQPVVLPAALILQPLEKAKQYHWVQQSDQFQ
LVEKDLLNILKEWQDPKAYMQIDTSQLESSQYHLDWSFILQQQDATALLK
DALQRYSYDLYAPIFQYLRLE
>ACIAD0399 recD, exonuclease V, alpha subunit
MDKQNISKDTDLAWLETWSKYLVQTPFNLGERNSAQITAMLQALIEASVQ
GDSGLVVSSSIVAELGNYVLDEAQAQTQVAPMIYDGELLALYRYWMLEQR
LAIQVVRLSQQVIPPVEVMPHLDLLTDPHQQAAMSMVATQAFSLITGGPG
TGKTYTLARIIAVLNQAIPNIRIAMAAPTGKAAQRMQEALQASFNDEKLT
ASGLLSHELKQQTTQTLHRLLGLGHQQLPRFHAKQPLPYDVIVVDEASML
DLKLATLLFEAVPAGCRLILLGDANQLASVDVGSVLADLQQVEALEQNRV
NLVTSRRFREGAKIGEFAQFIQCLDVTWDPQQILHEFEHQIAVPQALQPV
SLLHDRDDMVQLEYLPPKVNLEHLTPYYQKLMQGFETFAQQLKHYRLHDY
AESEVAAVIQAFDDYRILVAIRFGDFGLEHINKMVEQWLTQYLGILPVGG
WYIGRPVMMTYNDYQLGLSNGDIGICFRHRTQYDQFEVYFPSLDKWIAAN
RLPKNIQTAFALTIHKSQGSEFRHTAIVFDHMAQKVLSQELIYTAITRAK
QAVSLLVDQDALLQSLIIRTTRKSGLIKKINKDIILVSLPKE
>ACIAD0003 recF, DNA replication, recombinaison and repair protein
MQITRLNIERVRNLKAVALSGLQPFNIFYGANGSGKTSILEAVHLLATGR
SFRTHMPKHYIQQNAQDAIIFAQSLSEKIGMQKLLSGEQLIKVNGDTVAT
QGQLAKLLPLQHLDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYY
SRALKQRNMLLKTKRQLSLAELEPWNKMLSEYGEMLHSQRLVTVERWKDF
FQQDLAQLLPDLQIELEYSPGFHSEVGLWQDLLNYHNKDVERRYTEYGPH
RADLRLKTALGDADDVLSRGQKKLLMMALKLSQIAMLHASNKETVVLLDD
LTAELDSNAQRRLIERLSQLGSQVFITTLDHQAVTQHLDGLSISYQLYNV
DHGQVHAV
>ACIAD3235 recG, ATP-dependent DNA helicase
MIWGDMTSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIA
MNQLMVGRSYLLEGEIKSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKG
LTDKLKSGQRLRVFGEVRVGARGLEMYHPEIQVIHDYTPLPKTQLTAIYP
STEGLTQPKLREYIKQALKQYSDNLPELLPKQFTNGYVLKEALHYIHEPP
LNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPKFEPSQ
TLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLV
AAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQ
KGKARTQAEELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVD
QRLALRNKGVDHFTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRT
PIQTVTIPLDRREEVINRIASNCLEGKQAYWVCTLVEQSETLDAQAAEAT
YQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQLLIATTVIEVGV
DVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNGQ
ERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHL
LVQAHYVAEQVLKDHAQQAEALLNRWLPDAPRYAYV
>ACIAD3500 recJ, ssDNA exonuclease, 5'--> 3' specific , Mg dependent
MRTIQIKQRPLLTHPDQFQDVPEFIAHILARRGVDSIQQLDLKLKYLLKP
TLKGLDTAIALIDQAIDQQQQIIIVGDYDADGATSTALMCLALKEMGARV
DYIVPDRFKYGYGLTPAIADLAHQQCQPELLITVDNGISSHAGVEQAQQL
GMKVIITDHHLTTKSAPDAEAVVNPNQLNCPFPSKALAGVGVAFYLLAHL
SSLRQAHHKPSCKITQYLDLVALGTYADVASLDYNNRILVDAGLKRIQQQ
QCRAGILALLDIAKRDPSTLKAQDLGFVLGPRINAAGRMDSMNIGIECLL
ASDLETAYPIAEQLNRLNLERRQVETEMKQQALGYLEDIQLQHENIPPAL
VMFAENWHQGVIGIVAGRLKEQFHRPSIVFAPDTDGEHIKGSARSIEGIH
IRDTIEQVAEQHPHLVSHFGGHAAAAGLTLKKSHFEEFKNVFTACIAQMD
ETLLQAVLWTDGSLPAQAIDLETVDWIERLGPWGQKFPLPQFEGRFEVLD
YRWLKDIHLKLKLGLGEYGSVDAIAFNAAQKFDFDPMKKHVNLVYELDRN
EFNGSVNLQLRILHLDQT
>ACIAD0354 recN, protein used in recombination and DNA repair
MLTHLTLINFALADHLALDIEQGFNVLTGETGAGKSLLLDALSASLGERT
DTNYVRYGAEKADISATFSYKNYSPEAEWLKEHELDDESEEIHLRRVIFA
TGRSKAWINGRPSSLSELKELGRLLVQLYSQHSQQQLLEPPYPKHWLDRY
SNFYAPAQEVKTAYSVWQSTIRQHQAALDAQATRQQRIAALELQLEELED
IVQIDYKDIEQEFDRLSHHEHIMQDCAYSLNLLDEAEPNITQELSSLLRR
IESHAGRSEQLSEIYNSLVNAQSEIEDATSNLRQFMDRQSFDPARMEELN
STLESFHRLARKYRTQPEQLKQDYAEWQAELDQLHQLEDPETLAEQVDLA
HQQFLEKAKYLDQIRREAALPLAKQLTEQVKPLALPEAHFEFKFEPLEQP
NAEGLSFIQLLFTANKGIPPQPLARVASGGELSRIALVMQVMNAEKTESE
VLVFDEIDVGISGGTAEVVGRLLADLAQHVQLLCITHQAQVAAQSDQHLL
VKKQQTDPASSTIVKLDEEQRIFELARMSGGVEINETTLQHAKQLRRLKF
QHS
>ACIAD2578 recO, DNA repair protein
MRNEVLHGYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQYQPITL
QATGKGELKNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQ
TFQQYQIILQQLQLLNQHQQPAIFLKQILRQFEHVLLQELGYAIDFEIDC
NQNQINPLASYQFQPTEGFLPVSQQSHLTVSGQLICCMQNYQAGQEFSTE
QLQLLGKLYRQMITSLLGDRPLKSRQLWIQNTQSHS
>ACIAD2312 recR, recombination protein, gap repair
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFGLAHALHEAS
SHIHECKICHSLTENEICDICLSNDRDQHLLCVVESPADVMAIEQSGSFR
GKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSSGEIEEVILATNATVEGQA
TAHYLLEATKHLPVHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMKMK
>ACIAD0900 rep, ATP-dependent DNA helicase
MSAASHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIP
AHRITAMTFTNKAAREMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLEL
KHTPLKNNFSILDSDDCKRILMDLMQRDNLSGAESKELIAKAMKKISDWK
NDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYNAVDFDDLIVLPTRL
LQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAVGDD
DQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIEN
NPHIFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWK
DYAVLYRGNFQARVLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLI
INPEDDSAFLRIINTPKRAIGPVTLEKLGLFSQENHLSLLAAAADQRLSM
VIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQMMNEAGYIDYIREQ
AATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLLDMLE
QQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAADTIEE
ERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEWL
GRKKKLAGNVDPKEQAQQYLANLKALLKK
>ACIAD1314 rhlB, ATP-dependent RNA helicase (DEAD box)
MASGFGTLNLHPQLKQAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTG
TGKTAAFLISVINDLLNNPIQEQRYRGEVRALILAPTRELALQIESDARE
LTRFTDLNVLTLVGGVDFDKQKKPLNEKFIDILVATPGRLIDFVEQKEVW
LDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQTLMFSATFSYDV
LNLARQWLFEPVTVEIEPEQKTNNDVEQRVYMVAKQDKYRLLQDILRDEP
IDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQG
KNNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTQGV
SISFLSEDDAFYLPEIEKAIGKKLPLTRLEGYC
>ACIAD1137 rnhA-dnaQ, bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function]
MSQTITLYVDGACKGNPGLGGWGAYVITEQGEHKLCGGEAETTNNRMELT
AAIEGIRFCPQDASLIIWTDSNYVKQGITEWIHGWKKKNWKDVKNPDLWQ
ILDQLCQGRQIEWNWIKGHAGHAGNEMADELANLGASQTAAQLKSGSVAA
IDKKKPQNDWLLDDPFGFDMMTNDMDTDDTLQETELQKHVDPRLENEIPE
TSTESLHPQIVMTPAKIQAQGPRQLILDTETTGFYFQDGDRIIEVGAIEM
INRKLTGSSIHIYINPEKPVGDSVDVHGITDEFLLDKPKYAEIAEPLFEY
LKGAEIIAHNASFDMNFLDMEFKRAGLPTLSEVCEVTDTLALAKNKHPGQ
KNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS
QREQNQRKGQRARIEADLPVIRPSANELEKHNEWVKSYQEKNGEPCLFAK
>ACIAD1248 rnhB, RNAse HII
MIAGVDEAGRGPLVGSVVAAAVILDPHNPIDGLNDSKKLTEKKREKLFVE
IQEKALAWSIAEANHIEIDELNILQATFLAMRRAVDGLQIQPDKVLVDGN
QIPKGISIHCEAIVGGDASHAEISAASILAKVYRDQQMKLLDEKYPLFGF
AKHKGYPTKAHFQAIAIHGVVDEHRRSYAPVRRALNIDC
>ACIAD1149 rnt, ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity)
MEKSVTQENATPPVIGQRFRGFLPVVVDVETAGFNAQTDALLEIACIPIV
YNEQGLFVPGESYHAHINPFEGANLDRRSLDFIGIDPFNPMRIAMAEDER
SALKRIFKSIHEVRKQQQCTHAVLVGHNAHFDLGFLQAAIARTSTKNQNP
FHSFSVFDTVTLSAVMFGQTVLAKACIQAGIDFDGKEAHSALYDTQKTAE
LFCYILNKLSPHLLDTFLADQ
>ACIAD2614 ruvA, holliday junction helicase subunit A
MNRMIGCLIGEVFALEAPTVLLNVNGVGYEIDTPLSTFCQLQKGQHVTLW
THLVVREDAQQLYGFIDAQEKLIFRTLLKVNGVGPKMALGILSTLSIELF
IHTIEHDDINTLIKVPGVGRKTAERLMIELRDRFKALSVQATTGSTVTSA
QIQFSSNSPIAEAEAALQSLGYKPIEAQKAIAAVKADYTEAADLIRAALK
SMMK
>ACIAD2615 ruvB, holliday junction helicase, subunit B
MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGE
ALDHTLIFGPPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTN
LEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLP
PFTLVAATTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVTRSANLMNVP
MTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHDMAQRALDM
LNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP
YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN
>ACIAD2041 ruvC, holliday junction nuclease
MGNILFLKSFMPLIIGIDPGSRLTGYGIIEKNGNELRFIDAGTIRTESQD
MPERLKRIFAGVERIVKFHGPTQAAVEQVFMAQNPDSALKLGQARGAAIA
ALVNLDLEVAEYTARQIKQSVVGYGAADKEQVQMMVMRILNLTIKPQSDA
ADALAAAICHAHASGSMSKMAVLNALGGMARGRSRSSTRRR
>ACIAD0916 sbcC, ATP-dependent dsDNA exonuclease (Suppression of recBC)
MKILSIRLKNLASLAGEHFIDFESEPLASAGLIAIIGKTGAGKSTILDAM
CLALFNKIPRLKDSDGKLTDVDGSELLTNSPLTVLRRGTAHGFAELCFVA
QDQKHYLVRWEIKRARENANGKLQSVQRYLKCLTDGVVVADKSKAVETYI
QQITQLSFEQFTRAVLLAQSEVTAFLKARDNERGELLEYLTNSAIFAKIG
QLAFEKTKEVRLQREKLESVLGHLEIRSDEEIAELHTQFQNIQQQVQQLE
NEKNQFKQQQQWFEQRDKIRNEIDLKQQQYDLQLKAQQAIAQDRVLLSQL
EIFSEIRPIVFQQQQIQKTLQQLAPHIQQKHNEFHALTTQFQQEKTRYSQ
AEQSLHQFQGFEQKHQKELADLRNHLQKREHIKEDYNKTKSRLTQIESQR
HPLLAQQQQLEQTIHQLDIQHTDDLERLKNSAQYSPLDQGLKAHIQQLNQ
FNLHYQKIEHSLGSIQDAQARLEQDQNRFNTLIMQFGTTQHIEERIEQQQ
KLKQAQQIRLNQLDTTQQKIQRYFELKNEMFTLQSQFETVNQQYQEFEQS
TQKTEQDYQSAKNEREKLQQMLQQQRLLHAENIEHLRAELKHGEACLVCG
SIEHPYRDDESQISKALYELQQQQEQQAIQQEQQCFKLWQNMQQQFTQSQ
TQHKQLQHDLQQLREKLNGHDQQLQQHLLQSNIQLNFNLNEQDITAQLQA
LTLDSFQAHQQLENELQLLNQANKDHYQLTQRIQNTRHQLETVDQLQQQV
QHIVDCLSAEDKISWTKQGLLFTQHILQALQHRSQQLEHAEHLLKQKDQH
DQQLKLLLSNVAGLTTQQAECAQQLKEIEANGKQNTDAANQLIFTMTGST
ELKANEWLQQHDQQRHQLQQRYQQLKFNFEQARENFEQQKSALEHLEAKQ
QQNQDSLAQCKTEISTWLVQHQDFVEDQLNDLLAIASTQEQQIRNTIQQA
DRALSEVNSVLKTLQQQLNVHLELQPAIQAEQLSELMITNQNILMHTTDQ
RDQLKIQLELHQQNLSKQQQFANQIQIIQQQEHRWSKISSLIGDAKGKEF
RDLAQQYNLDILLEYANQQLAMLSQRYTLKRLDNSLSLAIIDHDMDGETR
SVASLSGGESFLTALAISLAIANMASGSMKIESLFIDEGFGTLDASSLHM
VMNALDQLQSQGRKVVLISHIQEMHERIPVQIQVQPIGSGSSRIEVVG
>ACIAD0917 sbcD, ATP-dependent dsDNA exonuclease (Suppression of recBC)
MAVRFFHTSDWHLGQFFYNHSRHYEHEQFLAWLLKQIKAKQPHALLIAGD
IFDVINPSSQAQKQLYQFLADAHALAPHMQTLMIAGNHDSGYRIEQVEPL
LEKYNARTVGVIRWNEDKTLNLERLILPVYDENKNVVAWCIALPFLRSAE
ITGFNEHTNNSQSAIAYLHEQLISEAKRRKTDDQAIILMSHAHMQGGETS
DSERPIIIGNEEALSTALFDDAIDYVALGHLHKPQKVQHPHIRYSGSPIP
LSFSEINYKHQVVDVNIDPTQSTDKFQFEAIEIPRSIKLHKIRGELNEVI
QQLKSLAQGEIESIDLREYIDIEYHTLTPPLPNLRQQFEDALPPKRYRLV
RISRQYLSQDNNAAQASKINLEPPTPEKLFEQIWDKKGYHADDDVKKDFM
SLVAQAQQQLEDQHKY
>ACIAD3449 ssb, ssDNA-binding protein controls activity of RecBCD nuclease
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKSTGERKEQ
TEWHRIVLHNRLGEIAQQYLRKGSKVYIEGSLRTRQWTDQNGQERYTTEI
RGDQMQMLDTRSQGDQPMSGGNDFNQPRFNNNAPQQNTGYNQGGGYNNSG
NNNFNQGSGYGNGGSNNSNQGGYVPKAPQQPAPADLDDDLPF
>ACIAD3611 tag, 3-methyl-adenine DNA glycosylase I, constitutive
MTTIKRCGWCSDDPLYIAYHDEEWGKPEYDEAKLFEMLCLEGQQAGLSWI
TVLKKREAYQQHFFQYCIDDIAKLTDDQLELKLEDKGLIRHIGKLKAIRD
NAIAWQSLKQQVEDVSTWLWERVQHQPVINDVPDYRQAPTQTEPSVELSK
QLKKLGFKFVGPTTCYAFMQAVGMVNDHENDCSFR
>ACIAD0493 topA, DNA topoisomerase type I, omega protein
MANAPRSTTKKSTTASSEPAGNKRALVIVESPAKAKTINKYLGSQYIVKS
SVGHVRDLPTGGSAKSGEKKPATRAKLTAEEKEQKAQNALINRMGVDPEH
DWKAHYEVLPGKEHVVAELKKLASQVDEVYLATDLDREGEAIAWHLKEVI
GGDDSRYQRVVFNEITKNAIQEAFKHPARLDTNKVNAQQARRFLDRVVGF
MISPLLWEKIARGLSAGRVQSVAVKLVVERERDIRAFIPEEYWQIFADTL
SKKDQIRLEAVKQAGKTLKLRNKADTDAVLNLLKDAEYKVAQREDKPTKV
NPSAPYITSTLQQAASTRLGFSVKKTMMLAQRLYEGGFITYMRTDSTFLS
DDAVNMVRDHIQQQFGDKYVPAKPNRYGNKAGAQEAHEAIRPSNVALTGD
QLAGMERDAQRLYDLIWRQFVACQMTPAEYLSSTLIVDANNVELRAKGRT
LVFDGFTRVRGANKSDDDVLLPAVKVGETLKLEKLDPSQHFTKPPARFTE
ASLVKELEKRGIGRPSTYAAIISTIQDRGYVKLENRRLFAEKMGEIVTDR
LDESFNNLMNYAFTADLEGQLDKVATGERNWKELLDSFYGDFKNRLNMAA
STEGMRRNQPVEVPDVACQLCSRPMQIRTGTTGVFLGCSGYNLPPKERCK
GTLNLTPVESLAAFSDDDSAETADLMAKHRCAKCGTAMDSYVIDGGRKLH
VCGNNPDCDGYEVEEGEFKIKGYDGPTIPCDKCDGEMQLKTGRFGPYFAC
TSCDNTRKVLKSGQPAPPRVDPIKMEHLRSVKHDDYFVLRDGAAGLFLAA
SKFPKIRETRAPKVAELRTVAEQLDPKYQYLLQAPDADPEGNPALIKFSR
KNQAQYVGSETPEGKQTKWSLVYQDGKWTEA
>ACIAD2352 ung, uracil-DNA glycosylase
MQLTEQQHDKLSKVQLDESWKHSLAEFLVSSRMDELRQFLIEQKNQDKVI
YPPSKQIFNALNTTPLSAVKVVILGQDPYHGPNQANGLSFSVQKGIVLPP
SLRNIFHELNTDLGIPVPKHGDLTKWADQGVLLLNSVLTVEAGQPTSHQK
RGWEQFTDSIIDVLNEQREHVVFILWGAYAQRKGQRIDREKHLVLKAAHP
SPLAANRGGFFGCKVFSKTNNYLKQHGIEPIDWQLDA
>ACIAD3455 uvrA, excinuclease ABC subunit A
MCLNIFHALSYISFSNSFQDHFMSQSHIRIRGARTHNLKNVSLDIPRDKF
VVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSQMEKPDVDAI
EGLSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEHDLP
MVAQTVSEMVDAVKVLDEGTALMLLAPVVRERKGEYSQLFEQLQGQGFVR
ARVDGEIIDIDSPPELDKKKKHTIEVVVDRFKVRDDLGNRIAESFETALR
LGSDLAILTWMNAEQPDRVFSAKHSCPECDRAVAELEPRMFSFNNPFGAC
PVCDGLGTRSHFSAEKLIPTSDLSISQGAIRGWDRQRPYYYSMLQKVAEH
FGYSLDEPWNKLDKDTQKKFLYGTGKEKIDLSYIDERGRRHNRVIPFEGV
ITHLERRYRETESNYVRDDLSQYLSNAACDACGGSRLNEISRHVKVKDKT
IADITSMSIGDAESYYQDINLEGAKGEIADKIFKEIRERLHFLVSVGLNY
LSLARSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRL
LQTLIRLRDLGNTVLVVEHDEDAIRAADHIIDIGPGAGIHGGEIIAEGTY
EELANHADSLTGQYLSGALKIEIPKQRLSSPTPDQKIKLSGAAGHNLKNV
DLTIPLGIMTCVTGVSGSGKSTLINRTLLPLAATQLNGATTLTAEKFDSI
DGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAQTPEAKARGY
AAGRFSFNVKGGRCEVCEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETL
EVSYKGKNISDVLEMTVEDGVEFFSAIPVIHRRLETLTQVGLGYIRLGQA
ATTLSGGEAQRVKLARELAKRDTGKTLYVLDEPTTGLHFHDIAKLLDILH
ELRNKGNTIVVIEHNLDVIKTADWVIDLGPEGGAGGGQIIAEGTPEQVAE
VEISHTGRFLKPMLS
>ACIAD2569 uvrB, excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC)
MRVNDNQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKT
YTMANVIAQTQRPTIVMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYY
QPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIY
GLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQYTRNELEFLRGTYRIR
GEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRVTIYPK
SHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEM
MQQLGYTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQ
IGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATP
AKYELEKSDQIVEQVVRPTGLIDPEIEIRPVLTQVDDVLSEINIRKEMDE
RVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDIDTVERVKIIHELRTGVY
DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIK
GKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEI
DTGEVFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKA
SKELQFEQAARLRDEILRLKAQMLH
>ACIAD0340 uvrC, excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision repair enzyme
MNPNARPHIEKILANMTQLPGVYRMLGKDGELLYVGKAKNLKNRVSSYFV
KTIEHPKTQALVARIHDIETLVTRSETEALLLEQNLIKQHRPPYNIMLRD
DKSYVYIFVSSDKPYPRIASGRGKGKHQIGKFFGPYPSAYSARDTLLVLQ
KLFNVRQCENSYFAQRKRPCLQYQIKRCSAPCVGLISPEDYKQDVDNSIR
FLQGDTKELNQELIAKMEEAAEQLAFEKAMFYRDRLGLLREVQAQQAVFK
IKGEADILAIAFQAGVTCVQIMYVRNGRMLGGKSYFPDMLSDDLGQMLSD
FIANFYFQVADEVPSELIVNVELPDRKELEQALQTQFDKKIQIKHKVRET
RAEWQELAIMNVQHAIKGQLSNHLELNERFHQLEQVVGRPVDRIECFDIS
HTMGEATIASCVVFDQGGARKRDYRQFGIEDITAGDDYAAMRQALTRRYK
KHIVPDLLLIDGGKGQLHMAMEVMQTLGLDAFMVGVSKGEGRKPGLETLH
FTDGSKIQLPEDHKALHLIQQVRDEAHRFAITKHRAKRDKRRAGSVLEVI
PGLGPKRRRDLLTHFGGIQGVLKASEKELMLVSGLGPSMARTIYKILHE
>ACIAD2657 xerC, site-specific tyrosine recombinase
MYNNQQLLAMWLKERMIQNQSEHTLNAYQRDLTDFFDFCEKRKLELMQVE
ASDLREYLAYRVEQSNLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDF
KLKRKSRPLPGMIDIETVHQILDQTAPEDELGTQLWLRDKAILELLYSSG
LRLAELQGLKLIDLDFNRQLLRVTGKGNKTRVIPFGKKAKQSLIDWLNVY
RLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALRAGVNVDLHPHLLR
HCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHPR
AQKIK
>ACIAD0266 xerD, site-specific tyrosine recombinase
MVSKKPRIPAPVTIPEQFSFLQGFRDYLVAQSVSPHTRNAYLSDLIQCAQ
LVVVPLPQWSSETISDVLIELTKTGKSPRSIARSLSALRQFFKFLREQKI
RDDNPVALHKSPKLGRTLPKDLSEQDVEALIHAPDTNTALGLRDRAMLEV
LYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQMATDWIER
YLVESRPQLYKSHTDYLFLTQHGGIMSRQNFWYAIKRYALQANILPEMSP
HTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQIRMQQLHEK
YHPRG