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2024-05-02 08:28:31

Gene list

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COG category: Replication, recombination and repair
Organism: Acinetobacter sp. ADP1, ADP1

Number of genes found: 123

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Acinetobacter sp. ADP1, ADP1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ACIAD2864 putative methyltransferasechromosome CDS2799971 402 - 0.348259
NA ACIAD2359 conserved hypothetical protein; putative deoxyribonucleasechromosome CDS2318379 774 - 0.419897
NA ACIAD0953 transposase for IS1236, orf1chromosome CDS942177 294 - 0.408163
NA ACIAD3070 conserved hypothetical proteinchromosome CDS2996521 837 - 0.419355
NA ACIAD3064 putative DNA uptake protein and/or related DNA-binding proteinchromosome CDS2990694 387 - 0.397933
NA ACIAD2941 conserved hypothetical protein; putative membrane proteinchromosome CDS2869298 2061 + 0.414362
NA ACIAD0958 transposase for IS1236, orf1chromosome CDS944492 294 - 0.408163
NA ACIAD2254 putative tellurium resistant protein (KlaA/kilA)chromosome CDS2225150 792 - 0.376263
NA ACIAD2257 putative DNA exonuclease Xchromosome CDS2229020 699 + 0.393419
NA ACIAD1882 putative G:T/U mismatch-specific DNA glycosylasechromosome CDS1875207 585 - 0.37094
NA ACIAD1336 hypothetical protein; putative protein kinasechromosome CDS1333684 795 + 0.373585
NA ACIAD2378 hypothetical proteinchromosome CDS2337708 330 + 0.381818
NA ACIAD0134 fragment of transposase for insertion sequencechromosome CDS138808 168 + 0.422619
NA ACIAD0321 transposase for IS1236, orf2chromosome CDS321947 858 + 0.432401
NA ACIAD1222 putative Nudix hydrolasechromosome CDS1225332 501 - 0.431138
NA ACIAD1791 transposase for IS1236, orf2chromosome CDS1799607 858 - 0.432401
NA ACIAD2484 conserved hypothetical proteinchromosome CDS2447064 954 + 0.377358
NA ACIAD2728 fragment of umuCchromosome CDS2673741 195 - 0.4
NA ACIAD1135 putative NADH pyrophosphatase (NUDIX hydrolase family)(NudC)chromosome CDS1121639 750 - 0.402667
NA ACIAD0495 putative ATP-dependent DNA helicase (PcrA)chromosome CDS488419 2019 + 0.435364
NA ACIAD0850 hypothetical protein; putative signal peptidechromosome CDS839089 576 + 0.326389
NA ACIAD0212 hypothetical proteinchromosome CDS207853 483 + 0.449275
NA ACIAD1100 putative methyltransferasechromosome CDS1090168 546 - 0.397436
NA ACIAD0952 transposase for IS1236, orf2chromosome CDS941311 858 - 0.432401
NA ACIAD1249 transposase for IS1236, orf2chromosome CDS1248198 852 - 0.431925
NA ACIAD2200 putative integrase/recombinase proteinchromosome CDS2168414 1023 - 0.437928
NA ACIAD3414 hypothetical proteinchromosome CDS3327660 330 + 0.333333
NA ACIAD0320 transposase for IS1236, orf1chromosome CDS321630 309 + 0.407767
NA ACIAD2632 putative chromosomal replication initiator, DnaA-typechromosome CDS2585389 708 - 0.413842
NA ACIAD1792 transposase for IS1236, orf1chromosome CDS1800473 309 - 0.407767
NA ACIAD1250 transposase for IS1236, orf1chromosome CDS1249064 294 - 0.408163
NA ACIAD2187 hypothetical proteinchromosome CDS2161436 369 - 0.425474
NA ACIAD1964 conserved hypothetical protein; putative protein kinasechromosome CDS1950963 1530 - 0.41634
NA ACIAD2780 fragment of transposase's ORF2chromosome CDS2726672 255 - 0.439216
NA ACIAD3091 conserved hypothetical protein; putative enzymechromosome CDS3017386 819 - 0.42735
NA ACIAD0248 putative DNA modification methylase (Adenine-specific methyltransferase)chromosome CDS247744 1296 + 0.447531
NA ACIAD2185 putative replicative DNA helicasechromosome CDS2159134 1329 - 0.472536
NA ACIAD0674 putative MutT/nudix family proteinchromosome CDS668987 615 + 0.42439
NA ACIAD0352 conserved hypothetical proteinchromosome CDS345524 444 - 0.477477
NA ACIAD2779 fragment of transposase's ORF2chromosome CDS2726460 216 - 0.361111
NA ACIAD0209 putative Rossmann-fold nucleotide-binding protein involved in DNA uptake (Smf)chromosome CDS204848 1152 - 0.450521
NA ACIAD3596 putative ATPasechromosome CDS3513635 1272 - 0.441038
NA ACIAD0820 hypothetical proteinchromosome CDS810384 393 + 0.346056
NA ACIAD3245 putative ATP-dependent RNA helicasechromosome CDS3159264 1923 - 0.469059
NA ACIAD1132 conserved hypothetical proteinchromosome CDS1119550 423 + 0.361702
NA ACIAD2781 fragment of transposase's ORF2chromosome CDS2726933 252 - 0.424603
NA ACIAD0957 transposase for IS1236, orf2chromosome CDS943626 858 - 0.432401
NA ACIAD3108 putative DNA polymerase III, delta subunit (probably ATP hydrolase) (HolA)chromosome CDS3032008 996 + 0.450803
NA ACIAD2799 hypothetical protein; putative conserved domainchromosome CDS2745769 453 - 0.448124
NA ACIAD1847 putative phage replication initiation factorchromosome CDS1849100 1164 - 0.406357
NA ACIAD0720 putative MutT/nudix family proteinchromosome CDS704853 405 + 0.414815
NA ACIAD0379 putative DNA helicasechromosome CDS371980 1503 - 0.448436
NA ACIAD2014 putative helicasechromosome CDS2005012 1713 - 0.394046
NA ACIAD0579 conserved hypothetical proteinchromosome CDS570239 543 + 0.381215
NA ACIAD0332 hypothetical proteinchromosome CDS327653 765 + 0.354248
NA ACIAD1858 putative phage replication initiation factorchromosome CDS1856146 1164 - 0.406357
NA ACIAD3237 conserved hypothetical protein; putative MutT/nudix family proteinchromosome CDS3153439 405 - 0.419753
NA ACIAD2782 fragment of transposase's ORF1chromosome CDS2727343 195 - 0.410256
ada ACIAD0344 bifunctional protein [Includes: transcriptional regulator of DNA repair (AraC/Xyl family); O6-methylguanine-DNA methyltransferase]chromosome CDS339360 861 + 0.450639
alkB ACIAD0345 DNA repair system specific for alkylated DNAchromosome CDS340217 609 + 0.433498
aspP ACIAD0275 adenosine diphosphate sugar pyrophosphatase (ADP-ribose pyrophosphatase)chromosome CDS275197 621 - 0.439614
crc ACIAD3526 catabolite repression control proteinchromosome CDS3453721 858 + 0.444056
dinP ACIAD0225 DNA polymerase IV, devoid of proofreading, damage-inducible protein Pchromosome CDS224762 1056 - 0.410985
dnaA ACIAD0001 DNA replication initiator protein, transcriptional regulator of replication and housekeeping geneschromosome CDS201 1398 + 0.438484
dnaB ACIAD2433 replicative DNA helicase;chromosome replication, chain elongationchromosome CDS2397789 1446 + 0.397649
dnaE ACIAD2089 DNA polymerase III, alpha chainchromosome CDS2072315 3564 + 0.428171
dnaG ACIAD2899 DNA primasechromosome CDS2837360 1890 + 0.418519
dnaN ACIAD0002 DNA polymerase III, beta chainchromosome CDS1834 1149 + 0.441253
dnaX ACIAD1970 DNA polymerase III, tau and gamma subunits (DNA elongation factor III)chromosome CDS1957924 2136 - 0.402154
fis ACIAD2446 DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replicationchromosome CDS2410329 291 + 0.426117
gyrA ACIAD2652 DNA gyrase, subunit A, type II topoisomerasechromosome CDS2605946 2730 - 0.445421
gyrB ACIAD0004 DNA gyrase, subunit B (type II topoisomerase)chromosome CDS4127 2469 + 0.44674
hepA ACIAD1204 RNA helicasechromosome CDS1204255 2862 + 0.424878
himA ACIAD3040 integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replicationchromosome CDS2970092 294 - 0.44898
himD ACIAD2346 integration host factor (IHF),beta subunit, site specific recombinationchromosome CDS2308539 306 - 0.385621
holB ACIAD2361 DNA polymerase III, delta prime subunitchromosome CDS2319517 996 - 0.400602
holC ACIAD0252 DNA polymerase III, chi subunitchromosome CDS250800 408 - 0.357843
hrpA ACIAD2102 ATP-dependent helicasechromosome CDS2088950 3855 - 0.410117
hupB ACIAD1408 DNA-binding protein HU-betachromosome CDS1401297 273 + 0.388278
ligA ACIAD0848 DNA ligasechromosome CDS835730 2031 + 0.454948
mfd ACIAD1395 transcription-repair coupling proteinchromosome CDS1388642 3516 + 0.410978
mutL ACIAD2375 enzyme in methyl-directed mismatch repair, stimulates binding of Vsr and MutS to heteroduplex DNAchromosome CDS2334119 1962 - 0.422018
mutM ACIAD0707 formamidopyrimidine-DNA glycosylasechromosome CDS693723 819 - 0.422466
mutS ACIAD1500 methyl-directed mismatch repair, recognize exocyclic adducts of guanosinechromosome CDS1495787 2646 - 0.400605
mutY ACIAD3606 A/G specific adenine glycosylasechromosome CDS3520893 1035 + 0.45314
nth ACIAD1108 endonuclease III DNA glycosylase/apyrimidinic (AP) lyasechromosome CDS1095871 666 - 0.403904
nudH ACIAD0455 (di)nucleoside polyphosphate hydrolase (Ap5A pyrophosphatase)chromosome CDS453598 501 - 0.457086
ogt ACIAD0692 methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase)chromosome CDS681122 504 + 0.400794
parC ACIAD0234 DNA topoisomerase IV, subunit Achromosome CDS233653 2217 + 0.425801
parE ACIAD3544 topoisomerase IV subunit Bchromosome CDS3468943 1881 - 0.45933
phrB ACIAD1182 deoxyribodipyrimidine photolyase (photoreactivation), FAD-bindingchromosome CDS1178836 1434 - 0.366109
polA ACIAD3030 DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonucleasechromosome CDS2959118 2763 + 0.435758
priA ACIAD0409 primosomal protein N' (= factor Y) directs replication fork assembly at D-loops, ATP-dependent.chromosome CDS410989 2232 - 0.448477
radC ACIAD3126 DNA repair protein, associated with replication forkschromosome CDS3053102 816 + 0.383578
recA ACIAD1385 DNA strand exchange and recombination protein with protease and nuclease activity.chromosome CDS1380692 1050 - 0.405714
recB ACIAD0398 exonuclease V, beta chainchromosome CDS394104 3705 + 0.435088
recC ACIAD0397 exonuclease V, gamma chainchromosome CDS390432 3666 + 0.443808
recD ACIAD0399 exonuclease V, alpha subunitchromosome CDS397904 1779 + 0.437886
recF ACIAD0003 DNA replication, recombinaison and repair proteinchromosome CDS2998 1077 + 0.420613
recG ACIAD3235 ATP-dependent DNA helicasechromosome CDS3150747 2061 + 0.447356
recJ ACIAD3500 ssDNA exonuclease, 5'--> 3' specific , Mg dependentchromosome CDS3424072 1707 - 0.440539
recN ACIAD0354 protein used in recombination and DNA repairchromosome CDS346630 1662 - 0.441637
recO ACIAD2578 DNA repair proteinchromosome CDS2537001 711 - 0.372714
recR ACIAD2312 recombination protein, gap repairchromosome CDS2278015 597 - 0.428811
rep ACIAD0900 ATP-dependent DNA helicasechromosome CDS882754 2040 + 0.410784
rhlB ACIAD1314 ATP-dependent RNA helicase (DEAD box)chromosome CDS1313277 1152 + 0.404514
rnhA-dnaQ ACIAD1137 bifunctional protein [Includes: ribonuclease HI; DNA polymerase III ,epsilon subunit, 3-5 exonucleolytic proofreading function]chromosome CDS1124144 1353 - 0.427938
rnhB ACIAD1248 RNAse HIIchromosome CDS1247459 570 + 0.422807
rnt ACIAD1149 ribonuclease T (degrades tRNA , has exonuclease and ssDNAse activity)chromosome CDS1140263 666 - 0.412913
ruvA ACIAD2614 holliday junction helicase subunit Achromosome CDS2569766 615 + 0.40813
ruvB ACIAD2615 holliday junction helicase, subunit Bchromosome CDS2570388 1005 + 0.483582
ruvC ACIAD2041 holliday junction nucleasechromosome CDS2029228 576 + 0.428819
sbcC ACIAD0916 ATP-dependent dsDNA exonuclease (Suppression of recBC)chromosome CDS897336 3597 - 0.392549
sbcD ACIAD0917 ATP-dependent dsDNA exonuclease (Suppression of recBC)chromosome CDS900942 1251 - 0.421263
ssb ACIAD3449 ssDNA-binding protein controls activity of RecBCD nucleasechromosome CDS3371292 579 - 0.447323
tag ACIAD3611 3-methyl-adenine DNA glycosylase I, constitutivechromosome CDS3523373 558 + 0.422939
topA ACIAD0493 DNA topoisomerase type I, omega proteinchromosome CDS484929 2646 + 0.449358
ung ACIAD2352 uracil-DNA glycosylasechromosome CDS2313666 714 - 0.40056
uvrA ACIAD3455 excinuclease ABC subunit Achromosome CDS3376566 2898 + 0.451001
uvrB ACIAD2569 excinuclease ABC subunit B (ATP-dependent DNA excision repair enzyme UvrAC)chromosome CDS2527299 2028 - 0.430966
uvrC ACIAD0340 excinuclease ABC subunit C; UvrC with UvrAB is a DNA excision repair enzymechromosome CDS335860 1800 + 0.439444
xerC ACIAD2657 site-specific tyrosine recombinasechromosome CDS2611761 918 - 0.408497
xerD ACIAD0266 site-specific tyrosine recombinasechromosome CDS266488 918 - 0.431373