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2024-05-04 08:12:37

Gene list

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COG category: Replication, recombination and repair
Organism: Dechloromonas aromatica RCB, RCB

Number of genes found: 191

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Dechloromonas aromatica RCB, RCB
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Daro_2223 Transposase, IS4chromosome CDS2406023 1170 - 0.559829
NA Daro_1653 Integrase, catalytic regionchromosome CDS1778145 828 - 0.582126
NA Daro_3653 ATPaschromosome CDS3925937 1464 - 0.422814
NA Daro_3525 C-5 cytosine-specific DNA methylasechromosome CDS3774763 1716 - 0.498834
NA Daro_2671 Integration host factor, alpha subunitchromosome CDS2867663 303 - 0.49505
NA Daro_0463 probable site-specific recombinasechromosome CDS514819 2061 - 0.646288
NA Daro_0808 RecR proteinchromosome CDS877924 600 + 0.555
NA Daro_1887 DNA-3-methyladenine glycosylase Ichromosome CDS2027454 591 + 0.610829
NA Daro_1779 Helicase c2:DEAD/DEAH box helicase, N-terminalchromosome CDS1918614 1926 + 0.629283
NA Daro_1306 Transposase IS3/IS911chromosome CDS1417994 303 - 0.587459
NA Daro_2559 conserved hypothetical proteinchromosome CDS2756365 1938 + 0.579463
NA Daro_3959 Integrase, catalytic regionchromosome CDS4255760 1161 + 0.562446
NA Daro_1711 Integrase, catalytic regionchromosome CDS1839162 828 - 0.582126
NA Daro_1381 DNA polymerase III, epsilon subunitchromosome CDS1513632 615 + 0.57561
NA Daro_2499 Resolvase, N-terminalchromosome CDS2699585 690 + 0.569565
NA Daro_2031 Recombination protein O, RecOchromosome CDS2182939 729 + 0.539095
NA Daro_2498 Phage integrasechromosome CDS2698059 1269 + 0.542159
NA Daro_0932 DNA repair protein RecNchromosome CDS1010656 1674 + 0.610514
NA Daro_3822 RNA-directed DNA polymerase (Reverse transcriptase)chromosome CDS4107965 1290 - 0.568217
NA Daro_2742 DNA alkylation repair enzymechromosome CDS2935139 654 + 0.565749
NA Daro_1854 Protein kinase:Leucine-rich repeatchromosome CDS1993479 1323 + 0.621315
NA Daro_2560 UvrD/REP helicasechromosome CDS2758299 1662 + 0.584236
NA Daro_2231 DNA repair protein RadCchromosome CDS2411796 582 + 0.639175
NA Daro_1305 Integrase, catalytic regionchromosome CDS1417170 828 - 0.582126
NA Daro_2695 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminalchromosome CDS2890657 1515 - 0.547855
NA Daro_2194 TatD-related deoxyribonucleasechromosome CDS2370608 774 - 0.550388
NA Daro_0559 DNA polymerase III, alpha subunitchromosome CDS619858 3471 + 0.617689
NA Daro_1372 Transposase, IS111A/IS1328/IS1533:Transposase IS116/IS110/IS902chromosome CDS1497350 1026 + 0.622807
NA Daro_3211 Exonuclease VII, large subunitchromosome CDS3461459 1353 + 0.622321
NA Daro_2108 Transposase, IS4chromosome CDS2276887 1482 - 0.573549
NA Daro_3142 DNA repair protein RadCchromosome CDS3383580 681 + 0.602056
NA Daro_3427 Integron integrasechromosome CDS3680916 984 - 0.583333
NA Daro_1983 Phage SPO1 DNA polymerase-related proteinchromosome CDS2132046 783 + 0.62069
NA Daro_2208 TatD-related deoxyribonucleasechromosome CDS2384185 804 - 0.59204
NA Daro_0001 chromosomal replication initiator protein, DnaAchromosome CDS151 1398 + 0.54578
NA Daro_3867 conserved hypothetical proteinchromosome CDS4158140 531 - 0.589454
NA Daro_1675 Phage integrasechromosome CDS1800686 1260 - 0.54127
NA Daro_3648 AP endonuclease, family 1:Exodeoxyribonuclease III xthchromosome CDS3921795 765 + 0.622222
NA Daro_3325 Radical SAMchromosome CDS3575387 1107 + 0.623306
NA Daro_3879 UvrD/REP helicasechromosome CDS4172324 1992 - 0.581325
NA Daro_0546 UvrD/REP helicasechromosome CDS604793 2142 + 0.609244
NA Daro_2694 conserved hypothetical proteinchromosome CDS2889738 930 - 0.569892
NA Daro_0690 RNA-directed DNA polymerase (Reverse transcriptase)chromosome CDS760413 1290 + 0.568217
NA Daro_0438 Protein kinasechromosome CDS480379 1374 + 0.59607
NA Daro_0064 A/G-specific adenine glycosylase MutYchromosome CDS74598 1038 - 0.602119
NA Daro_3523 Resolvase, N-terminal:Resolvase helix-turn-helix regionchromosome CDS3773077 555 - 0.585586
NA Daro_1118 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS1220106 1821 - 0.632619
NA Daro_3841 TatD-related deoxyribonucleasechromosome CDS4132692 762 - 0.616798
NA Daro_0018 DNA topoisomerase IIIchromosome CDS22231 2547 - 0.606989
NA Daro_1867 Gram negative topoisomerase IV, subunit Bchromosome CDS2005726 1989 - 0.613374
NA Daro_3059 Exonuclease VII, small subunitchromosome CDS3302530 240 + 0.604167
NA Daro_1384 Ribonuclease Hchromosome CDS1515702 651 + 0.537634
NA Daro_0801 hypothetical proteinchromosome CDS866183 702 - 0.52849
NA Daro_1820 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminalchromosome CDS1956783 1344 - 0.65625
NA Daro_0002 DNA polymerase III, beta chainchromosome CDS1758 1107 + 0.568202
NA Daro_0826 Protein kinase:Protein phosphatase 2C-likechromosome CDS897130 1689 + 0.640024
NA Daro_0503 Protein of unknown function UPF0102chromosome CDS563505 363 - 0.647383
NA Daro_3824 Transposase, IS4chromosome CDS4110880 1482 - 0.574899
NA Daro_1312 Resolvase, N-terminal:Resolvase helix-turn-helix regionchromosome CDS1426631 564 - 0.572695
NA Daro_1850 Gram negative topoisomerase IV, subunit Achromosome CDS1985806 2418 - 0.644334
NA Daro_0468 UvrD/REP helicasechromosome CDS523503 3405 + 0.656975
NA Daro_0003 DNA gyrase, B subunitchromosome CDS2938 2505 + 0.59481
NA Daro_2425 Integrase, catalytic regionchromosome CDS2619121 831 + 0.578821
NA Daro_2237 putative ATPase involved in DNA repairchromosome CDS2417940 2463 - 0.671133
NA Daro_2250 RNA-directed DNA polymerase (Reverse transcriptase)chromosome CDS2433628 1290 - 0.568217
NA Daro_1602 Protein kinase:GAFchromosome CDS1718068 2373 + 0.567636
NA Daro_1633 DNA polymerase III, epsilon subunitchromosome CDS1754660 2166 + 0.584488
NA Daro_1756 Ribonuclease HII/HIIIchromosome CDS1887042 591 + 0.614213
NA Daro_2531 Phage integrase, N-terminal SAM-likechromosome CDS2728302 1200 + 0.625
NA Daro_4060 Holliday junction DNA helicase RuvBchromosome CDS4357856 1077 - 0.627669
NA Daro_1302 Phage integrasechromosome CDS1413492 1698 + 0.530035
NA Daro_3293 NUDIX hydrolasechromosome CDS3543748 456 - 0.614035
NA Daro_0033 Primosomal protein nchromosome CDS38532 2001 + 0.632184
NA Daro_3726 Formamidopyrimidine-DNA glycolasechromosome CDS4004645 834 - 0.621103
NA Daro_3870 SNF2-related:Helicase, C-terminal:SWIM Zn-fingerchromosome CDS4161946 3276 + 0.635531
NA Daro_2546 Helicase, C-terminalchromosome CDS2740380 5010 + 0.639321
NA Daro_1288 propable PolBchromosome CDS1398686 786 + 0.590331
NA Daro_2123 UMUC-like DNA-repair proteinchromosome CDS2293819 1164 + 0.574742
NA Daro_1235 ATP dependent DNA ligase, centralchromosome CDS1341669 840 + 0.602381
NA Daro_3849 Protein kinasechromosome CDS4142869 945 + 0.589418
NA Daro_1395 Nitrogen fixation protein NifWchromosome CDS1524303 342 - 0.593567
NA Daro_2564 Protein of unknown function DUF1173chromosome CDS2763112 1209 - 0.631927
NA Daro_1433 Integrase, catalytic regionchromosome CDS1558453 1161 + 0.562446
NA Daro_3858 Putative exonuclease, RdgCchromosome CDS4150720 915 - 0.608743
NA Daro_2285 Integrase, catalytic regionchromosome CDS2468527 828 + 0.582126
NA Daro_0925 Cyclic nucleotide-binding:Protein kinasechromosome CDS1002879 1365 + 0.578755
NA Daro_2290 ATP-binding region, ATPase-likechromosome CDS2472242 1641 + 0.631932
NA Daro_3164 DNA mismatch repair proteinchromosome CDS3400423 1848 + 0.655303
NA Daro_3666 Helix-turn-helix, Fis-typechromosome CDS3940789 234 + 0.564103
NA Daro_1940 conserved hypothetical proteinchromosome CDS2088768 723 + 0.666667
NA Daro_1500 hypothetical proteinchromosome CDS1615953 1113 + 0.609164
NA Daro_3888 Competence protein ComEA helix-hairpin-helix regionchromosome CDS4180148 318 - 0.528302
NA Daro_3654 Phage integrasechromosome CDS3927660 1023 - 0.588465
NA Daro_1108 conserved hypothetical proteinchromosome CDS1210765 1782 - 0.621773
NA Daro_2971 conserved hypothetical proteinchromosome CDS3207981 867 + 0.619377
NA Daro_1217 primosomal replication protein Nchromosome CDS1322134 285 + 0.561404
NA Daro_2472 Excinuclease ABC, C subunit, N-terminalchromosome CDS2671550 261 + 0.613027
NA Daro_3310 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS3560036 1524 + 0.633202
NA Daro_0466 Competence protein ComEA helix-hairpin-helix regionchromosome CDS519936 798 + 0.655388
NA Daro_1907 DNA polymerase III, epsilon subunitchromosome CDS2049139 1362 - 0.617474
NA Daro_1297 conserved hypothetical proteinchromosome CDS1407666 579 - 0.654577
NA Daro_3180 conserved hypothetical proteinchromosome CDS3419484 693 + 0.637807
NA Daro_1659 Histone-like bacterial DNA-binding proteinchromosome CDS1783339 285 + 0.607018
NA Daro_2489 hypothetical proteinchromosome CDS2686838 405 + 0.548148
NA Daro_1281 Integration host factor, beta subunitchromosome CDS1392710 285 + 0.561404
NA Daro_1648 Histone-like bacterial DNA-binding proteinchromosome CDS1775166 222 - 0.585586
NA Daro_3024 NUDIX hydrolasechromosome CDS3270210 597 - 0.58124
NA Daro_2500 hypothetical proteinchromosome CDS2700350 957 - 0.507837
NA Daro_2003 Excinuclease ABC, B subunitchromosome CDS2157469 2073 + 0.553787
NA Daro_1636 hypothetical proteinchromosome CDS1759881 666 + 0.593093
NA Daro_0123 AP endonuclease, family 1:Exodeoxyribonuclease III xthchromosome CDS139128 780 + 0.551282
NA Daro_1942 DNA polymerase III, alpha subunitchromosome CDS2090875 3084 + 0.613165
NA Daro_1592 DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunitchromosome CDS1708387 717 - 0.60251
NA Daro_1327 Integration host factor, alpha subunitchromosome CDS1443950 342 - 0.535088
NA Daro_2038 Excinuclease ABC, C subunitchromosome CDS2188218 1812 + 0.566777
NA Daro_3526 Phage integrasechromosome CDS3776475 1680 - 0.534524
NA Daro_0356 ATP-dependent DNA helicase RecGchromosome CDS387480 2052 + 0.627193
NA Daro_1155 Endonuclease III/Nthchromosome CDS1259690 633 - 0.598736
NA Daro_0802 Resolvase, N-terminalchromosome CDS867012 690 - 0.575362
NA Daro_3512 Histone-like bacterial DNA-binding proteinchromosome CDS3762365 300 - 0.536667
NA Daro_0163 DNA polymerase Achromosome CDS178647 2721 - 0.636898
NA Daro_3434 Transposase IS116/IS110/IS902chromosome CDS3686041 1026 - 0.619883
NA Daro_2347 MutS 1 proteinchromosome CDS2527689 2583 + 0.635308
NA Daro_2555 DNA repair protein RadCchromosome CDS2752047 582 + 0.608247
NA Daro_0194 Tyrosine recombinase XerCchromosome CDS211440 888 + 0.627252
NA Daro_1230 DNA gyrase, subunit Achromosome CDS1334876 2640 + 0.600379
NA Daro_1657 conserved hypothetical proteinchromosome CDS1781164 1029 + 0.596696
NA Daro_1074 NUDIX hydrolasechromosome CDS1177982 786 - 0.629771
NA Daro_3722 Conserved hypothetical protein 95chromosome CDS4001245 555 + 0.589189
NA Daro_0483 Single-strand binding proteinchromosome CDS545859 471 + 0.613588
NA Daro_0913 ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQchromosome CDS988567 1854 - 0.639159
NA Daro_2663 TraHchromosome CDS2856967 1449 + 0.599034
NA Daro_1920 Exonuclease SbcDchromosome CDS2063927 1245 - 0.66506
NA Daro_0878 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS950826 1278 + 0.624413
NA Daro_1965 Transcription-repair coupling factorchromosome CDS2111293 3444 - 0.646922
NA Daro_2330 TraHchromosome CDS2509645 1449 + 0.596963
NA Daro_3892 Holliday junction resolvase YqgFchromosome CDS4183231 441 - 0.582766
NA Daro_2336 Phage integrasechromosome CDS2517136 1281 - 0.569087
NA Daro_1298 AAA ATPase, central regionchromosome CDS1408462 1314 + 0.621005
NA Daro_0631 NUDIX hydrolasechromosome CDS695011 453 - 0.584989
NA Daro_0963 NUDIX hydrolasechromosome CDS1043993 543 + 0.53407
NA Daro_2526 Phage integrasechromosome CDS2722914 1446 + 0.547026
NA Daro_0645 NUDIX hydrolasechromosome CDS708869 549 + 0.544627
NA Daro_1324 Phage integrasechromosome CDS1441002 1236 + 0.542071
NA Daro_1872 hypothetical proteinchromosome CDS2012355 573 - 0.619546
NA Daro_3894 DNA photolyase, FAD-binding:DNA photolyase, N-terminalchromosome CDS4184272 1413 + 0.595895
NA Daro_0467 conserved hypothetical proteinchromosome CDS520761 2739 + 0.654984
NA Daro_2284 Transposase IS3/IS911chromosome CDS2468228 303 + 0.587459
NA Daro_2558 putative ATPase involved in DNA repairchromosome CDS2753754 2457 - 0.619048
NA Daro_1037 Phage integrasechromosome CDS1137870 1017 - 0.564405
NA Daro_2163 hypothetical proteinchromosome CDS2335809 633 - 0.480253
NA Daro_2385 Rhomboid-like proteinchromosome CDS2570383 1077 - 0.570102
NA Daro_4063 Crossover junction endodeoxyribonuclease RuvCchromosome CDS4360615 540 - 0.637037
NA Daro_2240 hypothetical proteinchromosome CDS2423317 561 - 0.56328
NA Daro_0537 Tyrosine recombinase XerDchromosome CDS595374 909 - 0.652365
NA Daro_3426 ATP-dependent helicase HrpAchromosome CDS3676949 3990 - 0.62807
NA Daro_2041 Transposase IS116/IS110/IS902chromosome CDS2192900 1026 - 0.621832
NA Daro_1593 Ribonuclease Hchromosome CDS1709113 447 - 0.568233
NA Daro_1712 Transposase IS3/IS911chromosome CDS1839986 303 - 0.587459
NA Daro_0542 DNA polymerase III, delta subunitchromosome CDS599624 1008 - 0.627976
NA Daro_2563 Histone-like bacterial DNA-binding proteinchromosome CDS2762774 381 + 0.569554
NA Daro_2037 Uracil-DNA glycosylase superfamilychromosome CDS2187567 648 + 0.587963
NA Daro_2221 Helicase, C-terminalchromosome CDS2399873 5010 + 0.659281
NA Daro_1941 conserved hypothetical proteinchromosome CDS2089423 1440 + 0.626389
NA Daro_4152 RecA bacterial DNA recombination proteinchromosome CDS4450786 1032 - 0.594961
NA Daro_1715 Histone-like bacterial DNA-binding proteinchromosome CDS1842240 273 - 0.619048
NA Daro_2218 hypothetical proteinchromosome CDS2395071 1212 + 0.668317
NA Daro_0820 Protein kinase:Protein phosphatase 2C-likechromosome CDS890816 1725 + 0.575652
NA Daro_1129 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS1235629 1401 + 0.610992
NA Daro_1734 NAD-dependent DNA ligasechromosome CDS1864080 2052 + 0.623294
NA Daro_0788 Phage integrasechromosome CDS856014 1380 + 0.536232
NA Daro_0538 Methylated-DNA-(protein)-cysteineS-methyltransfe rasechromosome CDS596260 489 - 0.635992
NA Daro_2573 conserved hypothetical proteinchromosome CDS2771125 1011 + 0.623145
NA Daro_3652 Resolvase, N-terminalchromosome CDS3925341 579 + 0.604491
NA Daro_2196 DNA polymerase III delta prime subunitchromosome CDS2371760 1020 - 0.543137
NA Daro_2838 RecJ exonucleasechromosome CDS3048867 1701 + 0.63786
NA Daro_0282 Putative RNA methylase:THUMPchromosome CDS325585 1143 + 0.607174
NA Daro_3449 N6 adenine-specific DNA methyltransferase, N12 classchromosome CDS3699180 1170 + 0.582906
NA Daro_2704 Phage integrasechromosome CDS2896523 1215 - 0.548148
NA Daro_1919 SMC protein, N-terminalchromosome CDS2060463 3468 - 0.638697
NA Daro_3083 DNA polymerase III chi subunit, HolCchromosome CDS3323300 423 + 0.576832
NA Daro_0806 AAA ATPase, central regionchromosome CDS875969 1614 + 0.551425
NA Daro_2424 Transposase IS3/IS911chromosome CDS2618825 270 + 0.533333
NA Daro_0473 Excinuclease ABC, A subunitchromosome CDS531202 2826 - 0.624204
NA Daro_1220 DnaB helicasechromosome CDS1323197 1410 + 0.58156
NA Daro_4062 DNA recombination protein, RuvAchromosome CDS4359987 579 - 0.613126
NA Daro_0843 HhH-GPDchromosome CDS917009 618 + 0.587379
NA Daro_0527 DNA primasechromosome CDS588141 1737 - 0.63673
NA Daro_0019 SMF proteinchromosome CDS24827 1077 - 0.61467
NA Daro_3677 Ribonuclease Hchromosome CDS3953143 492 + 0.609756
NA Daro_1654 Transposase IS3/IS911chromosome CDS1778969 303 - 0.587459