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2024-04-29 11:28:59

Gene list

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COG category: Replication, recombination and repair
Organism: Thermobifida fusca YX, YX

Number of genes found: 157

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thermobifida fusca YX, YX
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tfu_1593 cRISPR-associated helicase Cas3, corechromosome CDS1835906 2835 - 0.6194
NA Tfu_0926 conserved hypothetical proteinchromosome CDS1089500 942 + 0.68259
NA Tfu_2878 DNA and RNA helicasechromosome CDS3390040 3153 + 0.687916
NA Tfu_1799 hypothetical proteinchromosome CDS2101318 621 - 0.674718
NA Tfu_0115 conserved hypothetical proteinchromosome CDS138774 933 + 0.681672
NA Tfu_2329 similar to Superfamily I DNA and RNA helicaseschromosome CDS2741187 2040 + 0.695588
NA Tfu_0522 conserved hypothetical proteinchromosome CDS588524 327 + 0.715596
NA Tfu_0163 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS187692 1710 - 0.716374
NA Tfu_1096 DNA-directed DNA polymerasechromosome CDS1276310 1275 + 0.702745
NA Tfu_0468 exonuclease VII, large subunitchromosome CDS529261 1221 - 0.70516
NA Tfu_0852 Recombination protein O, RecOchromosome CDS1007016 732 + 0.691257
NA Tfu_0047 DNA polymerase III, alpha subunitchromosome CDS49207 3567 - 0.635828
NA Tfu_2072 hypothetical proteinchromosome CDS2428172 261 - 0.643678
NA Tfu_2580 ATP-dependent DNA helicase PcrAchromosome CDS3045031 2265 - 0.671082
NA Tfu_2069 Holliday junction resolvase YqgFchromosome CDS2423019 480 - 0.689583
NA Tfu_1816 conserved hypothetical proteinchromosome CDS2116249 843 + 0.688019
NA Tfu_2074 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS2429251 1854 + 0.700647
NA Tfu_2668 conserved hypothetical proteinchromosome CDS3135895 2088 - 0.718391
NA Tfu_1342 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS1555535 1587 - 0.695022
NA Tfu_1341 uracil-DNA glycosylasechromosome CDS1554798 687 - 0.691412
NA Tfu_2948 putative phage integrasechromosome CDS3457944 333 + 0.660661
NA Tfu_1553 putative integrase/recombinasechromosome CDS1790694 1032 - 0.648256
NA Tfu_2145 ribonuclease Hchromosome CDS2513701 696 - 0.715517
NA Tfu_0725 helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS850533 2850 - 0.68386
NA Tfu_1823 putative membrane proteinchromosome CDS2125767 462 - 0.69697
NA Tfu_0004 RecF proteinchromosome CDS4988 1134 + 0.693122
NA Tfu_0694 putative DNA repair hydrolasechromosome CDS802717 879 + 0.734926
NA Tfu_0628 Histone-like bacterial DNA-binding proteinchromosome CDS731179 282 + 0.613475
NA Tfu_0535 conserved hypothetical proteinchromosome CDS607424 558 - 0.725806
NA Tfu_1587 Protein of unknown function DUF48chromosome CDS1829376 999 - 0.612613
NA Tfu_2229 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS2625937 1935 - 0.69509
NA Tfu_2699 excisionase/Xis, DNA-bindingchromosome CDS3174748 204 + 0.671569
NA Tfu_2824 hypothetical proteinchromosome CDS3319266 1050 - 0.659048
NA Tfu_1332 conserved hypothetical proteinchromosome CDS1542342 756 + 0.674603
NA Tfu_0097 hypothetical proteinchromosome CDS118103 900 - 0.695556
NA Tfu_3094 Single-strand binding proteinchromosome CDS3614691 549 - 0.675774
NA Tfu_0002 DNA polymerase III, beta chainchromosome CDS2824 1119 + 0.663986
NA Tfu_0498 DNA-3-methyladenine glycosylase Ichromosome CDS564934 657 + 0.70624
NA Tfu_1196 excinuclease ABC, B subunitchromosome CDS1397067 2106 + 0.674739
NA Tfu_0051 ATPasechromosome CDS55183 2079 - 0.690717
NA Tfu_0366 methylated-DNA (protein)-cysteine S-methyltransferasechromosome CDS411172 696 - 0.691092
NA Tfu_2326 putative DNA helicasechromosome CDS2736299 2136 + 0.691479
NA Tfu_0669 conserved hypothetical proteinchromosome CDS773890 375 + 0.704
NA Tfu_2024 excinuclease ABC, A subunitchromosome CDS2365792 2838 - 0.671952
NA Tfu_2093 Holliday junction DNA helicase RuvBchromosome CDS2455584 1056 - 0.698864
NA Tfu_3065 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS3581019 1500 + 0.682
NA Tfu_1756 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS2049658 1827 - 0.701149
NA Tfu_1141 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS1332165 915 + 0.714754
NA Tfu_1840 conserved hypothetical proteinchromosome CDS2146128 1746 + 0.74055
NA Tfu_1765 helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS2062463 2844 - 0.687412
NA Tfu_0603 NAD-dependent DNA ligasechromosome CDS692635 2238 + 0.668007
NA Tfu_0258 AP endonuclease, family 1:Exodeoxyribonuclease III xthchromosome CDS289275 795 + 0.667925
NA Tfu_1541 AP endonuclease, family 1:Exodeoxyribonuclease III xthchromosome CDS1776405 804 - 0.662935
NA Tfu_2080 hypothetical proteinchromosome CDS2438955 1083 - 0.66759
NA Tfu_0714 exonucleasechromosome CDS832638 1551 + 0.679562
NA Tfu_2784 bacterial DNA topoisomerase Ichromosome CDS3266636 2721 - 0.667769
NA Tfu_0500 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS566517 1473 + 0.720299
NA Tfu_0826 helix-hairpin-helix DNA-binding, class 1chromosome CDS978482 1068 - 0.754682
NA Tfu_1323 transposase-related proteinchromosome CDS1533952 399 + 0.641604
NA Tfu_1559 putative uvrA-like proteinchromosome CDS1796553 762 - 0.637795
NA Tfu_1560 putative excision nuclease ABC subunitchromosome CDS1797322 1209 - 0.626137
NA Tfu_2450 DEAD/DEAH box helicase, N-terminalchromosome CDS2877461 2859 + 0.699545
NA Tfu_2081 ATPase related to the helicase subunit of the Holliday junction resolvasechromosome CDS2440583 1326 - 0.696833
NA Tfu_1133 transposase, IS605 OrfBchromosome CDS1324563 1194 - 0.674204
NA Tfu_2507 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS2954172 1266 - 0.672196
NA Tfu_0229 putative MutT family proteinchromosome CDS258636 426 - 0.690141
NA Tfu_0183 exonucleasechromosome CDS206397 753 + 0.682603
NA Tfu_1324 transposase, IS605 OrfBchromosome CDS1534351 1194 + 0.674204
NA Tfu_2875 HhH-GPD:Iron-sulfur cluster loopchromosome CDS3384693 876 + 0.711187
NA Tfu_2317 ATP-dependent helicase HrpAchromosome CDS2723860 3975 - 0.669434
NA Tfu_0703 transposase, IS605 OrfBchromosome CDS815282 1107 + 0.660343
NA Tfu_0527 conserved hypothetical proteinchromosome CDS598738 981 + 0.717635
NA Tfu_0086 DNA polymerase III, beta chainchromosome CDS108704 1140 + 0.671053
NA Tfu_0006 DNA gyrase, B subunitchromosome CDS6950 1986 + 0.64149
NA Tfu_2041 hypothetical proteinchromosome CDS2385006 489 - 0.678937
NA Tfu_0118 endonuclease III/Nthchromosome CDS141677 777 + 0.651223
NA Tfu_0720 similar to Superfamily I DNA and RNA helicases and helicase subunitschromosome CDS839538 4473 + 0.658395
NA Tfu_1073 primosomal protein N' (replication factor Y) (superfamily II helicase)chromosome CDS1252643 2034 - 0.761554
NA Tfu_0715 similar to Rossmann fold nucleotide-binding protein involved in DNA uptakechromosome CDS834415 969 + 0.642931
NA Tfu_2782 DNA polymerase III delta prime subunitchromosome CDS3263171 1173 - 0.706735
NA Tfu_0044 RecR proteinchromosome CDS45983 600 - 0.661667
NA Tfu_2758 putative mut-like proteinchromosome CDS3235770 492 + 0.703252
NA Tfu_0424 transcription-repair coupling factorchromosome CDS475896 3633 - 0.698321
NA Tfu_0803 DNA recombination protein RecA precursorchromosome CDS946506 3534 + 0.683928
NA Tfu_0467 exonuclease VII, small subunitchromosome CDS529019 246 - 0.678862
NA Tfu_0001 bacterial chromosomal replication initiator protein, DnaAchromosome CDS195 1848 + 0.681277
NA Tfu_0726 hypothetical proteinchromosome CDS853952 711 + 0.627286
NA Tfu_2401 conserved hypothetical proteinchromosome CDS2823000 753 + 0.658699
NA Tfu_2347 exonucleasechromosome CDS2762205 942 - 0.729299
NA Tfu_2381 ATPaseDEAD/DEAH box helicase, N-terminalchromosome CDS2804434 1710 - 0.693567
NA Tfu_1027 DNA polymerase III, epsilon subunitchromosome CDS1201754 1773 - 0.739425
NA Tfu_2167 helicase c2:DEAD/DEAH box helicase, N-terminalchromosome CDS2540053 2121 - 0.712871
NA Tfu_0524 putative DNA helicasechromosome CDS592553 3327 + 0.71055
NA Tfu_0019 DnaB helicasechromosome CDS25692 1350 + 0.654815
NA Tfu_2131 DNA gyrase/topoisomerase IV, subunit Achromosome CDS2494333 2496 + 0.682292
NA Tfu_0701 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS810381 4266 + 0.676746
NA Tfu_0592 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS679872 1812 + 0.673289
NA Tfu_0064 putative DNA helicasechromosome CDS80214 2091 + 0.665232
NA Tfu_1918 putative DNA glycosylasechromosome CDS2244116 639 - 0.72144
NA Tfu_1189 DNA polymerase Achromosome CDS1385427 2790 + 0.684946
NA Tfu_0601 serine/threonine protein kinasechromosome CDS690111 1083 + 0.518929
NA Tfu_2095 crossover junction endodeoxyribonuclease RuvCchromosome CDS2457289 549 - 0.712204
NA Tfu_1658 Tyrosine protein kinase:Serine/threonine protein kinase:Sel1-like repeatchromosome CDS1927572 1800 - 0.671667
NA Tfu_2140 PAS/Protein phosphatase 2C-likechromosome CDS2505566 2067 - 0.654572
NA Tfu_2021 excinuclease ABC, C subunitchromosome CDS2361510 1971 - 0.680873
NA Tfu_2075 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS2431210 1647 + 0.700668
NA Tfu_0693 similar to Superfamily I DNA and RNA helicases and helicase subunitschromosome CDS799802 2805 + 0.73369
NA Tfu_2751 excisionase/Xis, DNA-bindingchromosome CDS3231362 204 + 0.686275
NA Tfu_1034 conserved hypothetical proteinchromosome CDS1211686 699 + 0.736767
NA Tfu_1427 putative DNA repair proteinchromosome CDS1652855 693 - 0.708514
NA Tfu_3105 conserved hypothetical proteinchromosome CDS3631413 1518 + 0.668643
NA Tfu_1579 similar to Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)chromosome CDS1821348 1149 + 0.652741
NA Tfu_1514 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS1745730 1518 + 0.648221
NA Tfu_2457 putative mutT-like proteinchromosome CDS2888253 444 - 0.68018
NA Tfu_0902 DNA polymerase III, epsilon subunitchromosome CDS1064369 633 + 0.723539
NA Tfu_2094 DNA recombination protein, RuvAchromosome CDS2456652 609 - 0.70936
NA Tfu_2947 DNA integration/recombination/invertion proteinchromosome CDS3457408 534 + 0.61236
NA Tfu_0007 DNA gyrase, subunit Achromosome CDS8992 2547 + 0.669808
NA Tfu_1583 CRISPR-associated protein TM1795 family, N-terminalchromosome CDS1825225 1236 + 0.591424
NA Tfu_1956 AP endonuclease, family 2chromosome CDS2287417 882 + 0.70068
NA Tfu_0823 DNA polymerase III, delta subunitchromosome CDS974194 1041 - 0.711816
NA Tfu_1134 transposase-related proteinchromosome CDS1325757 399 - 0.641604
NA Tfu_0671 SMF proteinchromosome CDS775808 1185 + 0.725738
NA Tfu_1000 probable phosphoesterase YhaO-putative DNA repair exonucleasechromosome CDS1175505 1251 - 0.68745
NA Tfu_0674 integrase/recombinase XerCchromosome CDS778537 912 + 0.73136
NA Tfu_0530 superfamily I DNA and RNA helicaseschromosome CDS600855 2139 + 0.695652
NA Tfu_0534 deoxyribodipyrimidine photolyasechromosome CDS606046 1260 - 0.714286
NA Tfu_0514 helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS581156 1512 - 0.68254
NA Tfu_2361 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS2777090 1260 - 0.673016
NA Tfu_0119 conserved hypothetical proteinchromosome CDS142450 666 + 0.684685
NA Tfu_1753 helicase RecD/TraAchromosome CDS2045167 2211 - 0.654455
NA Tfu_0398 TatD-related deoxyribonucleasechromosome CDS443951 921 + 0.693811
NA Tfu_1507 Methylated-DNA-(protein)-cysteineS-methyltransfe rasechromosome CDS1739217 783 + 0.692209
NA Tfu_2845 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS3348599 1689 - 0.671995
NA Tfu_1580 Protein of unknown function DUF324chromosome CDS1822493 903 + 0.632337
NA Tfu_0056 Tyrosine protein kinase:WD-40 repeat:Serine/threonine protein kinasechromosome CDS63613 2229 - 0.686855
NA Tfu_0214 similar to Site-specific recombinase XerDchromosome CDS243597 834 + 0.682254
NA Tfu_0866 DNA primasechromosome CDS1021393 1971 + 0.670218
NA Tfu_0523 putative ATP-dependent DNA helicasechromosome CDS589304 3135 + 0.706539
NA Tfu_0646 ATP-dependent DNA helicase RecGchromosome CDS748983 2202 + 0.715713
NA Tfu_1200 conserved hypothetical proteinchromosome CDS1402894 624 + 0.701923
NA Tfu_0652 formamidopyrimidine-DNA glycolasechromosome CDS754525 891 + 0.69697
NA Tfu_1440 helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS1666098 1689 + 0.680876
NA Tfu_2134 DNA topoisomerase (ATP-hydrolyzing)chromosome CDS2497930 2109 - 0.66477
NA Tfu_1201 tyrosine recombinase XerDchromosome CDS1403584 966 + 0.716356
NA Tfu_0406 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS456285 1875 - 0.692267
NA Tfu_2039 hypothetical proteinchromosome CDS2383208 429 - 0.664336
NA Tfu_2032 DNA repair protein RecNchromosome CDS2376310 1704 - 0.696596
NA Tfu_1561 uvrA-like proteinchromosome CDS1798652 294 - 0.612245
NA Tfu_0608 Surface protein from Gram-positive cocci, anchor regionchromosome CDS701101 1167 - 0.694087
NA Tfu_0647 Conserved hypothetical protein 95chromosome CDS751291 582 + 0.690722
NA Tfu_1400 putative endonucleasechromosome CDS1624280 696 - 0.708333
NA Tfu_1084 serine/threonine protein kinasechromosome CDS1265267 2502 - 0.733014
NA Tfu_1537 conserved hypothetical proteinchromosome CDS1773947 489 - 0.697342
NA Tfu_2375 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS2795985 1956 - 0.689162
NA Tfu_1582 CRISPR-associated protein, TM1791chromosome CDS1823864 1002 + 0.617764
NA Tfu_0454 Tyrosine protein kinase:Serine/threonine protein kinasechromosome CDS513283 1395 - 0.686738