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2024-05-21 00:19:03

Gene list

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COG category: Replication, recombination and repair
Organism: Candidatus Pelagibacter ubique HTCC1062, HTCC1062

Number of genes found: 61

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Candidatus Pelagibacter ubique HTCC1062, HTCC1062
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SAR11_1002 TatD related DNaseSubName: Full=TatD related DNase; EC=3.1.21.-; chromosome CDS982348 765 + 0.260131
NA SAR11_1079 Putative Holliday junction resolvaseRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1045593 456 + 0.309211
NA SAR11_0298 DNA photolyase-like proteinSubName: Full=DNA photolyase-like protein; chromosome CDS296040 1143 + 0.258968
NA SAR11_0721 probable ATPase involved in DNA replication initiationSubName: Full=Probable ATPase involved in DNA replication initiation; chromosome CDS704468 663 + 0.224736
NA SAR11_0154 N6-adenine-specific methylaseSubName: Full=N6-adenine-specific methylase; chromosome CDS157024 567 + 0.238095
NA SAR11_1330 putative lipoproteinSubName: Full=Putative lipoprotein; chromosome CDS1265702 738 + 0.230352
NA SAR11_1072 Staphylococcal nuclease-like proteinSubName: Full=Staphylococcal nuclease-like protein; chromosome CDS1038898 486 - 0.283951
NA SAR11_0455 hypothetical transmembrane proteinSubName: Full=Hypothetical transmembrane protein; chromosome CDS450066 1656 + 0.25785
NA SAR11_1269 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1204894 1653 - 0.284936
NA SAR11_0107 probable DNA-directed DNA polymeraseSubName: Full=Probable DNA-directed DNA polymerase; EC=2.7.7.7; chromosome CDS118803 732 + 0.26776
NA SAR11_1169 possible multi-domain proteinSubName: Full=Possible multi-domain protein; chromosome CDS1122717 900 - 0.316667
NA SAR11_1207 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1155958 390 + 0.235897
NA SAR11_0926 hypothetical SurA-like proteinSubName: Full=Hypothetical SurA-like protein; chromosome CDS890930 1422 - 0.227145
NA SAR11_1011 Excinuclease ABCSubName: Full=Excinuclease ABC; chromosome CDS990347 252 + 0.230159
NA SAR11_0720 possible membrane proteinSubName: Full=Possible membrane protein; chromosome CDS703605 867 + 0.206459
ada SAR11_1021 6-O-methylguanine DNA methyltransferaseSubName: Full=6-O-methylguanine DNA methyltransferase; EC=2.1.1.63; chromosome CDS999542 288 + 0.368056
babIM SAR11_0109 site-specific DNA methyltransferaseSubName: Full=Site-specific DNA methyltransferase; EC=2.1.1.72; chromosome CDS120216 1071 + 0.304388
dnaA SAR11_0410 Chromosomal replication initiator proteinRecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS398915 1335 + 0.265918
dnaB SAR11_0702 replicative DNA helicase (dnaB)SubName: Full=Replicative DNA helicase (DnaB); chromosome CDS687312 1419 - 0.3284
dnaE SAR11_0906 DNA polymerase III alpha subunitSubName: Full=DNA polymerase III alpha subunit; chromosome CDS869738 3417 + 0.288557
dnaG SAR11_0038 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS43790 1776 - 0.275338
dnaN SAR11_0411 DNA polymerase IIISubName: Full=DNA polymerase III; EC=2.7.7.7; chromosome CDS400461 891 + 0.25477
dnaQ SAR11_0339 DNA polymerase IIISubName: Full=DNA polymerase III; EC=2.7.7.7; chromosome CDS332015 672 - 0.28869
dnaX SAR11_0507 DNA-directed DNA polymerase gamma/tau subunitSubName: Full=DNA-directed DNA polymerase gamma/tau subunit; EC=2.7.7.7; chromosome CDS493665 1674 + 0.269415
gyrA SAR11_0985 DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS966406 2550 + 0.312157
gyrB SAR11_0446 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)SubName: Full=DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B); EC=5.99.1.3; chromosome CDS441234 2058 + 0.29932
himA SAR11_1035 Bacterial DNA-binding proteinSubName: Full=Bacterial DNA-binding protein; chromosome CDS1009118 309 - 0.220065
himD SAR11_0491 Integration host factor beta-subunit (IHF-beta)SubName: Full=Integration host factor beta-subunit (IHF-beta); chromosome CDS479666 291 - 0.28866
holA SAR11_0355 DNA-directed DNA polymerase IIISubName: Full=DNA-directed DNA polymerase III; EC=2.7.7.7; chromosome CDS347236 996 - 0.226908
holB SAR11_1000 probable DNA polymerase IIISubName: Full=Probable DNA polymerase III; EC=2.7.7.7; chromosome CDS979881 933 + 0.209003
hupA SAR11_0817 non-specific DNA-binding protein HBsuSubName: Full=Non-specific DNA-binding protein HBsu; chromosome CDS791591 276 + 0.32971
ligA SAR11_0016 DNA ligaseRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS17539 2031 - 0.269325
mutM SAR11_0408 Formamidopyrimidine-DNA glycosylaseSubName: Full=Formamidopyrimidine-DNA glycosylase; EC=3.2.2.23; chromosome CDS397259 864 + 0.232639
mutY SAR11_0111 A/G-specific adenine glycosylaseSubName: Full=A/G-specific adenine glycosylase; EC=3.2.2.-; chromosome CDS122434 981 - 0.251784
nth SAR11_0365 probable endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS356265 654 - 0.30581
nudH SAR11_0228 probable (di)nucleoside polyphosphate hydrolaseRecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS226898 477 + 0.297694
phrB SAR11_1318 Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme)SubName: Full=Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme); EC=4.1.99.3; chromosome CDS1253122 1422 + 0.294655
pilO SAR11_0062 type 4 fimbrial biogenesis protein PilOSubName: Full=Type 4 fimbrial biogenesis protein PilO; chromosome CDS72547 678 - 0.283186
polA SAR11_0200 DNA polymerase ISubName: Full=DNA polymerase I; EC=2.7.7.7; chromosome CDS200829 2775 - 0.294775
priA SAR11_0234 probable primosomal protein NSubName: Full=Probable primosomal protein N; chromosome CDS232263 1956 - 0.281697
recA SAR11_0641 recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS625897 1077 + 0.358403
recG SAR11_0993 ATP-dependent DNA helicase recGSubName: Full=ATP-dependent DNA helicase recG; EC=3.6.1.-; chromosome CDS972986 2052 - 0.263158
recJ SAR11_1010 single-stranded-DNA-specific exonuclease RecJSubName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS988522 1695 + 0.236578
recO SAR11_1052 Recombination protein OSubName: Full=Recombination protein O; chromosome CDS1022169 681 - 0.256975
recR SAR11_0509 recR-like proteinRecName: Full=Recombination protein RecR; chromosome CDS495664 612 + 0.300654
rlhE SAR11_0164 probable ATP-dependent RNA helicaseSubName: Full=Probable ATP-dependent RNA helicase; chromosome CDS166432 1749 - 0.331046
rnhA SAR11_0126 Ribonuclease H (RNase H)RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; chromosome CDS135675 426 + 0.312207
rnhB SAR11_0108 Ribonuclease HII (RNase HII)RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS119534 561 + 0.28164
sbcB SAR11_0483 Exodeoxyribonuclease ISubName: Full=Exodeoxyribonuclease I; EC=3.1.11.1; chromosome CDS472372 1428 + 0.316527
ssb SAR11_0984 single-strand binding protein (ssb)RecName: Full=Single-stranded DNA-binding protein; chromosome CDS965942 459 + 0.342048
suv3 SAR11_0426 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS412276 2481 - 0.278517
tag SAR11_0186 DNA-3-methyladenine glycosylase ISubName: Full=DNA-3-methyladenine glycosylase I; EC=3.2.2.20; chromosome CDS186570 573 - 0.287958
topA SAR11_1083 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1048935 2592 + 0.310571
umuC SAR11_0634 umuCSubName: Full=UmuC; chromosome CDS620734 1281 - 0.293521
ung SAR11_0873 uracil-DNA glycosylaseSubName: Full=Uracil-DNA glycosylase; EC=3.2.2.-; chromosome CDS841141 675 - 0.245926
uvrA SAR11_0983 excinuclease ABC chain ARecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS962973 2880 - 0.320833
uvrB SAR11_0081 excinuclease ABC chain BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS95195 2172 + 0.333333
uvrC SAR11_0084 excinuclease ABC chain CRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS98509 1836 + 0.300109
uvrD SAR11_0014 DNA helicase IISubName: Full=DNA helicase II; EC=3.6.1.-; chromosome CDS13829 2037 + 0.292587
xerD SAR11_1019 Integrase/recombinase xerD-like proteinSubName: Full=Integrase/recombinase xerD-like protein; chromosome CDS997872 957 - 0.296761
xthA SAR11_0967 exodeoxyribonuclease IIISubName: Full=Exodeoxyribonuclease III; EC=3.1.11.2; chromosome CDS950443 777 - 0.272844